Multiple sequence alignment - TraesCS5D01G460900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G460900 chr5D 100.000 3661 0 0 1 3661 505213857 505217517 0.000000e+00 6761.0
1 TraesCS5D01G460900 chr5D 80.759 764 109 19 2917 3661 358591559 358590815 2.470000e-156 562.0
2 TraesCS5D01G460900 chr5D 94.684 301 15 1 1 300 451628742 451628442 1.990000e-127 466.0
3 TraesCS5D01G460900 chr5D 93.603 297 19 0 4 300 518285712 518286008 9.330000e-121 444.0
4 TraesCS5D01G460900 chr5B 91.502 2283 101 45 461 2706 635193276 635195502 0.000000e+00 3055.0
5 TraesCS5D01G460900 chr5B 77.339 684 107 36 3004 3661 596452560 596453221 9.660000e-96 361.0
6 TraesCS5D01G460900 chr5B 88.372 215 14 6 2722 2935 635196309 635196513 7.850000e-62 248.0
7 TraesCS5D01G460900 chr5B 85.027 187 15 8 2702 2884 635195728 635195905 1.040000e-40 178.0
8 TraesCS5D01G460900 chr5A 93.571 1882 72 17 931 2787 632835635 632837492 0.000000e+00 2760.0
9 TraesCS5D01G460900 chr5A 91.355 428 17 7 455 864 632835207 632835632 5.310000e-158 568.0
10 TraesCS5D01G460900 chr5A 78.312 770 117 34 2915 3661 459422047 459421305 5.570000e-123 451.0
11 TraesCS5D01G460900 chr3B 82.443 655 87 13 3033 3661 228100244 228099592 6.910000e-152 547.0
12 TraesCS5D01G460900 chr3B 81.379 435 72 8 3234 3661 29631942 29631510 2.710000e-91 346.0
13 TraesCS5D01G460900 chr3B 84.393 173 24 2 1787 1956 137750705 137750877 2.260000e-37 167.0
14 TraesCS5D01G460900 chr2D 94.020 301 17 1 1 300 76870144 76870444 4.310000e-124 455.0
15 TraesCS5D01G460900 chr2D 94.020 301 17 1 1 300 632074935 632075235 4.310000e-124 455.0
16 TraesCS5D01G460900 chr2D 93.023 301 19 2 1 300 598002191 598002490 4.340000e-119 438.0
17 TraesCS5D01G460900 chr2A 93.377 302 18 2 1 301 20795934 20795634 2.590000e-121 446.0
18 TraesCS5D01G460900 chr2A 88.732 71 6 2 387 456 10920205 10920136 6.510000e-13 86.1
19 TraesCS5D01G460900 chr7B 93.603 297 19 0 4 300 150467026 150466730 9.330000e-121 444.0
20 TraesCS5D01G460900 chr6D 93.355 301 19 1 1 300 31823510 31823810 9.330000e-121 444.0
21 TraesCS5D01G460900 chr6D 87.465 359 39 6 2132 2487 317006482 317006837 3.400000e-110 409.0
22 TraesCS5D01G460900 chr6D 88.732 142 16 0 1784 1925 317006125 317006266 1.350000e-39 174.0
23 TraesCS5D01G460900 chr6A 93.023 301 19 2 1 300 153385791 153386090 4.340000e-119 438.0
24 TraesCS5D01G460900 chr6A 85.794 359 45 6 2132 2487 454648752 454649107 3.450000e-100 375.0
25 TraesCS5D01G460900 chr6A 87.324 142 18 0 1784 1925 454648395 454648536 2.930000e-36 163.0
26 TraesCS5D01G460900 chr6A 100.000 28 0 0 400 427 330058364 330058391 7.000000e-03 52.8
27 TraesCS5D01G460900 chr1D 85.784 408 47 7 1282 1688 127503754 127504151 4.370000e-114 422.0
28 TraesCS5D01G460900 chr1D 84.101 434 63 5 3234 3661 403691379 403691812 7.310000e-112 414.0
29 TraesCS5D01G460900 chr1D 82.051 429 61 15 3234 3652 32522227 32522649 5.820000e-93 351.0
30 TraesCS5D01G460900 chr1D 83.721 387 46 10 2125 2495 127504598 127504983 2.090000e-92 350.0
31 TraesCS5D01G460900 chr1D 85.030 167 25 0 1787 1953 127504233 127504399 1.750000e-38 171.0
32 TraesCS5D01G460900 chr1B 85.539 408 48 7 1282 1688 246453885 246454282 2.030000e-112 416.0
33 TraesCS5D01G460900 chr1B 83.721 387 46 10 2125 2495 246454725 246455110 2.090000e-92 350.0
34 TraesCS5D01G460900 chr1A 85.539 408 48 7 1282 1688 186212225 186212622 2.030000e-112 416.0
35 TraesCS5D01G460900 chr1A 83.979 387 45 11 2125 2495 186213065 186213450 4.500000e-94 355.0
36 TraesCS5D01G460900 chr6B 87.324 355 39 4 2157 2508 507593083 507592732 5.690000e-108 401.0
37 TraesCS5D01G460900 chr6B 89.928 139 14 0 1787 1925 507593470 507593332 2.900000e-41 180.0
38 TraesCS5D01G460900 chr7D 78.184 683 110 24 3016 3661 566566073 566565393 2.050000e-107 399.0
39 TraesCS5D01G460900 chr7D 81.609 435 68 8 3234 3661 174989444 174989015 2.090000e-92 350.0
40 TraesCS5D01G460900 chr7A 86.464 362 45 4 3303 3661 97024328 97024688 9.530000e-106 394.0
41 TraesCS5D01G460900 chr3D 84.393 173 24 2 1787 1956 88352214 88352386 2.260000e-37 167.0
42 TraesCS5D01G460900 chr3A 84.393 173 24 2 1787 1956 105112953 105112781 2.260000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G460900 chr5D 505213857 505217517 3660 False 6761.000000 6761 100.000000 1 3661 1 chr5D.!!$F1 3660
1 TraesCS5D01G460900 chr5D 358590815 358591559 744 True 562.000000 562 80.759000 2917 3661 1 chr5D.!!$R1 744
2 TraesCS5D01G460900 chr5B 635193276 635196513 3237 False 1160.333333 3055 88.300333 461 2935 3 chr5B.!!$F2 2474
3 TraesCS5D01G460900 chr5B 596452560 596453221 661 False 361.000000 361 77.339000 3004 3661 1 chr5B.!!$F1 657
4 TraesCS5D01G460900 chr5A 632835207 632837492 2285 False 1664.000000 2760 92.463000 455 2787 2 chr5A.!!$F1 2332
5 TraesCS5D01G460900 chr5A 459421305 459422047 742 True 451.000000 451 78.312000 2915 3661 1 chr5A.!!$R1 746
6 TraesCS5D01G460900 chr3B 228099592 228100244 652 True 547.000000 547 82.443000 3033 3661 1 chr3B.!!$R2 628
7 TraesCS5D01G460900 chr6D 317006125 317006837 712 False 291.500000 409 88.098500 1784 2487 2 chr6D.!!$F2 703
8 TraesCS5D01G460900 chr6A 454648395 454649107 712 False 269.000000 375 86.559000 1784 2487 2 chr6A.!!$F3 703
9 TraesCS5D01G460900 chr1D 127503754 127504983 1229 False 314.333333 422 84.845000 1282 2495 3 chr1D.!!$F3 1213
10 TraesCS5D01G460900 chr1B 246453885 246455110 1225 False 383.000000 416 84.630000 1282 2495 2 chr1B.!!$F1 1213
11 TraesCS5D01G460900 chr1A 186212225 186213450 1225 False 385.500000 416 84.759000 1282 2495 2 chr1A.!!$F1 1213
12 TraesCS5D01G460900 chr6B 507592732 507593470 738 True 290.500000 401 88.626000 1787 2508 2 chr6B.!!$R1 721
13 TraesCS5D01G460900 chr7D 566565393 566566073 680 True 399.000000 399 78.184000 3016 3661 1 chr7D.!!$R2 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.03659 ACCAAAATGCAACATGGGGC 59.963 50.0 16.49 0.07 37.26 5.80 F
1701 1754 0.03601 CCAGGTGACCAGACATGACC 60.036 60.0 3.63 0.00 28.87 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1839 0.515564 GACGCGTAAAACCTGCACAT 59.484 50.0 13.97 0.0 0.00 3.21 R
2791 3756 0.527565 GCCCTACAGTGCAACAATGG 59.472 55.0 0.00 0.0 41.43 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.504916 CTCTGCCCGGCTCGTCAG 62.505 72.222 11.61 0.00 0.00 3.51
47 48 4.452733 CGAAGGTGGAGTCCGGCC 62.453 72.222 13.16 13.16 0.00 6.13
48 49 3.003763 GAAGGTGGAGTCCGGCCT 61.004 66.667 16.81 16.81 34.00 5.19
49 50 3.003763 AAGGTGGAGTCCGGCCTC 61.004 66.667 21.18 3.23 31.99 4.70
97 98 4.516195 GGCTTCTCCGACGAGGCC 62.516 72.222 10.36 10.36 46.77 5.19
98 99 4.856607 GCTTCTCCGACGAGGCCG 62.857 72.222 0.00 0.00 40.77 6.13
99 100 4.856607 CTTCTCCGACGAGGCCGC 62.857 72.222 0.00 0.00 40.77 6.53
105 106 4.137872 CGACGAGGCCGCCCTAAA 62.138 66.667 5.55 0.00 43.12 1.85
106 107 2.202892 GACGAGGCCGCCCTAAAG 60.203 66.667 5.55 0.00 43.12 1.85
107 108 3.001406 ACGAGGCCGCCCTAAAGT 61.001 61.111 5.55 0.00 43.12 2.66
108 109 2.511600 CGAGGCCGCCCTAAAGTG 60.512 66.667 5.55 0.00 43.12 3.16
109 110 2.124695 GAGGCCGCCCTAAAGTGG 60.125 66.667 5.55 0.00 43.12 4.00
110 111 2.609610 AGGCCGCCCTAAAGTGGA 60.610 61.111 5.55 0.00 40.58 4.02
111 112 2.437895 GGCCGCCCTAAAGTGGAC 60.438 66.667 0.00 0.00 39.99 4.02
112 113 2.818274 GCCGCCCTAAAGTGGACG 60.818 66.667 0.00 0.00 39.99 4.79
113 114 2.818274 CCGCCCTAAAGTGGACGC 60.818 66.667 0.00 0.00 39.99 5.19
114 115 2.047655 CGCCCTAAAGTGGACGCA 60.048 61.111 0.00 0.00 0.00 5.24
115 116 2.100631 CGCCCTAAAGTGGACGCAG 61.101 63.158 0.00 0.00 0.00 5.18
116 117 1.745489 GCCCTAAAGTGGACGCAGG 60.745 63.158 0.00 0.00 0.00 4.85
117 118 1.980052 CCCTAAAGTGGACGCAGGA 59.020 57.895 0.00 0.00 0.00 3.86
118 119 0.391263 CCCTAAAGTGGACGCAGGAC 60.391 60.000 0.00 0.00 0.00 3.85
129 130 4.787999 GCAGGACGACTACCTTCG 57.212 61.111 0.00 0.00 44.87 3.79
130 131 1.516603 GCAGGACGACTACCTTCGC 60.517 63.158 0.00 0.00 43.06 4.70
131 132 1.226323 CAGGACGACTACCTTCGCG 60.226 63.158 0.00 0.00 43.06 5.87
132 133 1.376424 AGGACGACTACCTTCGCGA 60.376 57.895 3.71 3.71 43.06 5.87
133 134 0.747283 AGGACGACTACCTTCGCGAT 60.747 55.000 10.88 0.00 43.06 4.58
134 135 0.591741 GGACGACTACCTTCGCGATG 60.592 60.000 10.88 13.11 43.06 3.84
135 136 0.376152 GACGACTACCTTCGCGATGA 59.624 55.000 22.25 1.48 43.06 2.92
136 137 0.377554 ACGACTACCTTCGCGATGAG 59.622 55.000 22.25 14.80 43.06 2.90
137 138 0.656259 CGACTACCTTCGCGATGAGA 59.344 55.000 22.25 9.16 31.03 3.27
138 139 1.264557 CGACTACCTTCGCGATGAGAT 59.735 52.381 22.25 1.26 31.03 2.75
139 140 2.656085 GACTACCTTCGCGATGAGATG 58.344 52.381 22.25 8.72 0.00 2.90
140 141 1.338337 ACTACCTTCGCGATGAGATGG 59.662 52.381 22.25 13.68 38.46 3.51
141 142 1.338337 CTACCTTCGCGATGAGATGGT 59.662 52.381 22.25 17.94 44.81 3.55
142 143 0.103208 ACCTTCGCGATGAGATGGTC 59.897 55.000 22.25 0.00 40.70 4.02
143 144 0.598680 CCTTCGCGATGAGATGGTCC 60.599 60.000 22.25 0.00 0.00 4.46
144 145 0.936764 CTTCGCGATGAGATGGTCCG 60.937 60.000 16.38 0.00 0.00 4.79
145 146 2.349969 TTCGCGATGAGATGGTCCGG 62.350 60.000 10.88 0.00 0.00 5.14
146 147 2.663188 GCGATGAGATGGTCCGGC 60.663 66.667 0.00 0.00 0.00 6.13
147 148 2.814604 CGATGAGATGGTCCGGCA 59.185 61.111 0.00 0.00 0.00 5.69
148 149 1.300465 CGATGAGATGGTCCGGCAG 60.300 63.158 0.00 0.00 0.00 4.85
149 150 1.596477 GATGAGATGGTCCGGCAGC 60.596 63.158 0.00 0.00 0.00 5.25
150 151 3.451556 ATGAGATGGTCCGGCAGCG 62.452 63.158 0.00 0.00 0.00 5.18
168 169 3.160047 CCGAGCCCTGCAGGAGAT 61.160 66.667 34.91 22.30 38.24 2.75
169 170 1.834378 CCGAGCCCTGCAGGAGATA 60.834 63.158 34.91 0.00 38.24 1.98
170 171 1.664873 CGAGCCCTGCAGGAGATAG 59.335 63.158 34.91 18.32 38.24 2.08
171 172 1.370810 GAGCCCTGCAGGAGATAGC 59.629 63.158 34.91 26.47 38.24 2.97
172 173 2.110757 GAGCCCTGCAGGAGATAGCC 62.111 65.000 34.91 16.88 38.24 3.93
173 174 2.739784 CCCTGCAGGAGATAGCCG 59.260 66.667 34.91 10.80 38.24 5.52
174 175 2.030262 CCTGCAGGAGATAGCCGC 59.970 66.667 29.88 0.00 37.39 6.53
175 176 2.030262 CTGCAGGAGATAGCCGCC 59.970 66.667 5.57 0.00 34.63 6.13
176 177 3.527775 CTGCAGGAGATAGCCGCCC 62.528 68.421 5.57 0.00 35.03 6.13
177 178 4.671569 GCAGGAGATAGCCGCCCG 62.672 72.222 0.00 0.00 35.03 6.13
178 179 4.671569 CAGGAGATAGCCGCCCGC 62.672 72.222 0.00 0.00 35.03 6.13
181 182 4.671569 GAGATAGCCGCCCGCCAG 62.672 72.222 0.00 0.00 38.78 4.85
212 213 3.056458 ACGAGAACGGCATGGTGA 58.944 55.556 0.00 0.00 44.46 4.02
213 214 1.596934 ACGAGAACGGCATGGTGAT 59.403 52.632 0.00 0.00 44.46 3.06
214 215 0.460284 ACGAGAACGGCATGGTGATC 60.460 55.000 0.00 0.00 44.46 2.92
215 216 1.154205 CGAGAACGGCATGGTGATCC 61.154 60.000 0.00 0.00 35.72 3.36
216 217 0.179000 GAGAACGGCATGGTGATCCT 59.821 55.000 0.00 0.00 34.23 3.24
217 218 0.179000 AGAACGGCATGGTGATCCTC 59.821 55.000 0.00 0.00 34.23 3.71
218 219 1.153369 AACGGCATGGTGATCCTCG 60.153 57.895 0.00 0.00 34.23 4.63
219 220 1.613317 AACGGCATGGTGATCCTCGA 61.613 55.000 0.00 0.00 34.23 4.04
220 221 1.592669 CGGCATGGTGATCCTCGAC 60.593 63.158 0.00 0.00 34.23 4.20
221 222 1.522092 GGCATGGTGATCCTCGACA 59.478 57.895 0.00 0.00 34.23 4.35
222 223 0.531532 GGCATGGTGATCCTCGACAG 60.532 60.000 0.00 0.00 34.23 3.51
223 224 1.156645 GCATGGTGATCCTCGACAGC 61.157 60.000 0.00 0.00 35.47 4.40
224 225 0.873312 CATGGTGATCCTCGACAGCG 60.873 60.000 0.00 0.00 37.33 5.18
225 226 1.037579 ATGGTGATCCTCGACAGCGA 61.038 55.000 0.00 0.00 45.71 4.93
226 227 1.226717 GGTGATCCTCGACAGCGAC 60.227 63.158 0.00 0.00 42.51 5.19
227 228 1.583967 GTGATCCTCGACAGCGACG 60.584 63.158 0.00 0.00 42.51 5.12
228 229 1.743995 TGATCCTCGACAGCGACGA 60.744 57.895 0.00 0.00 42.51 4.20
233 234 3.785499 TCGACAGCGACGAGGACG 61.785 66.667 0.00 1.71 42.51 4.79
234 235 3.785499 CGACAGCGACGAGGACGA 61.785 66.667 0.00 0.00 43.06 4.20
235 236 2.098680 GACAGCGACGAGGACGAG 59.901 66.667 0.00 0.00 42.66 4.18
236 237 3.384014 GACAGCGACGAGGACGAGG 62.384 68.421 0.00 0.00 42.66 4.63
237 238 3.125573 CAGCGACGAGGACGAGGA 61.126 66.667 0.00 0.00 42.66 3.71
238 239 3.126225 AGCGACGAGGACGAGGAC 61.126 66.667 0.00 0.00 42.66 3.85
239 240 4.517703 GCGACGAGGACGAGGACG 62.518 72.222 0.00 0.00 42.66 4.79
240 241 4.517703 CGACGAGGACGAGGACGC 62.518 72.222 0.00 0.00 43.96 5.19
241 242 4.176851 GACGAGGACGAGGACGCC 62.177 72.222 0.00 0.00 43.96 5.68
250 251 4.452733 GAGGACGCCCCCGAACTG 62.453 72.222 0.00 0.00 38.29 3.16
252 253 4.754667 GGACGCCCCCGAACTGTC 62.755 72.222 0.00 0.00 38.29 3.51
253 254 4.754667 GACGCCCCCGAACTGTCC 62.755 72.222 0.00 0.00 38.29 4.02
255 256 4.323477 CGCCCCCGAACTGTCCAA 62.323 66.667 0.00 0.00 36.29 3.53
256 257 2.671963 GCCCCCGAACTGTCCAAC 60.672 66.667 0.00 0.00 0.00 3.77
257 258 2.033602 CCCCCGAACTGTCCAACC 59.966 66.667 0.00 0.00 0.00 3.77
258 259 2.033602 CCCCGAACTGTCCAACCC 59.966 66.667 0.00 0.00 0.00 4.11
259 260 2.358247 CCCGAACTGTCCAACCCG 60.358 66.667 0.00 0.00 0.00 5.28
260 261 3.047877 CCGAACTGTCCAACCCGC 61.048 66.667 0.00 0.00 0.00 6.13
261 262 3.047877 CGAACTGTCCAACCCGCC 61.048 66.667 0.00 0.00 0.00 6.13
262 263 3.047877 GAACTGTCCAACCCGCCG 61.048 66.667 0.00 0.00 0.00 6.46
293 294 4.355720 CTGGGCAAGGGAGCAGCA 62.356 66.667 0.00 0.00 35.83 4.41
294 295 4.355720 TGGGCAAGGGAGCAGCAG 62.356 66.667 0.00 0.00 35.83 4.24
296 297 4.357279 GGCAAGGGAGCAGCAGGT 62.357 66.667 0.00 0.00 35.83 4.00
297 298 2.671070 GCAAGGGAGCAGCAGGTA 59.329 61.111 0.00 0.00 0.00 3.08
298 299 1.746991 GCAAGGGAGCAGCAGGTAC 60.747 63.158 0.00 0.00 0.00 3.34
299 300 1.448540 CAAGGGAGCAGCAGGTACG 60.449 63.158 0.00 0.00 0.00 3.67
300 301 1.609501 AAGGGAGCAGCAGGTACGA 60.610 57.895 0.00 0.00 0.00 3.43
301 302 1.192146 AAGGGAGCAGCAGGTACGAA 61.192 55.000 0.00 0.00 0.00 3.85
302 303 1.448013 GGGAGCAGCAGGTACGAAC 60.448 63.158 0.00 0.00 0.00 3.95
303 304 1.805945 GGAGCAGCAGGTACGAACG 60.806 63.158 0.00 0.00 0.00 3.95
304 305 1.080705 GAGCAGCAGGTACGAACGT 60.081 57.895 5.03 5.03 0.00 3.99
305 306 1.344942 GAGCAGCAGGTACGAACGTG 61.345 60.000 10.14 0.00 42.96 4.49
306 307 2.380410 GCAGCAGGTACGAACGTGG 61.380 63.158 10.14 0.00 40.93 4.94
307 308 1.736645 CAGCAGGTACGAACGTGGG 60.737 63.158 10.14 0.00 40.93 4.61
308 309 2.433664 GCAGGTACGAACGTGGGG 60.434 66.667 10.14 0.00 40.93 4.96
309 310 2.433664 CAGGTACGAACGTGGGGC 60.434 66.667 10.14 0.00 37.75 5.80
310 311 3.698820 AGGTACGAACGTGGGGCC 61.699 66.667 10.14 0.00 0.00 5.80
315 316 4.770874 CGAACGTGGGGCCGGATT 62.771 66.667 5.05 0.00 0.00 3.01
316 317 2.360726 GAACGTGGGGCCGGATTT 60.361 61.111 5.05 0.00 0.00 2.17
317 318 1.974875 GAACGTGGGGCCGGATTTT 60.975 57.895 5.05 0.00 0.00 1.82
318 319 2.207788 GAACGTGGGGCCGGATTTTG 62.208 60.000 5.05 0.00 0.00 2.44
319 320 2.675075 CGTGGGGCCGGATTTTGT 60.675 61.111 5.05 0.00 0.00 2.83
320 321 2.272447 CGTGGGGCCGGATTTTGTT 61.272 57.895 5.05 0.00 0.00 2.83
321 322 1.811645 CGTGGGGCCGGATTTTGTTT 61.812 55.000 5.05 0.00 0.00 2.83
322 323 0.394938 GTGGGGCCGGATTTTGTTTT 59.605 50.000 5.05 0.00 0.00 2.43
323 324 1.132500 TGGGGCCGGATTTTGTTTTT 58.868 45.000 5.05 0.00 0.00 1.94
347 348 9.565213 TTTTAAAGAAAACCAAAATGCAACATG 57.435 25.926 0.00 0.00 29.38 3.21
348 349 5.754543 AAGAAAACCAAAATGCAACATGG 57.245 34.783 12.07 12.07 38.91 3.66
349 350 4.136051 AGAAAACCAAAATGCAACATGGG 58.864 39.130 16.49 6.60 37.26 4.00
350 351 2.565046 AACCAAAATGCAACATGGGG 57.435 45.000 16.49 5.67 37.26 4.96
351 352 0.036590 ACCAAAATGCAACATGGGGC 59.963 50.000 16.49 0.07 37.26 5.80
352 353 1.020333 CCAAAATGCAACATGGGGCG 61.020 55.000 0.00 0.00 0.00 6.13
353 354 1.020333 CAAAATGCAACATGGGGCGG 61.020 55.000 0.00 0.00 0.00 6.13
354 355 2.801483 AAAATGCAACATGGGGCGGC 62.801 55.000 0.00 0.00 0.00 6.53
359 360 3.395702 AACATGGGGCGGCGACTA 61.396 61.111 14.66 1.87 0.00 2.59
360 361 3.385749 AACATGGGGCGGCGACTAG 62.386 63.158 14.66 2.35 0.00 2.57
361 362 4.609018 CATGGGGCGGCGACTAGG 62.609 72.222 14.66 0.00 0.00 3.02
362 363 4.853142 ATGGGGCGGCGACTAGGA 62.853 66.667 14.66 0.00 0.00 2.94
364 365 4.222847 GGGGCGGCGACTAGGAAG 62.223 72.222 14.66 0.00 0.00 3.46
365 366 4.893601 GGGCGGCGACTAGGAAGC 62.894 72.222 14.66 0.00 0.00 3.86
366 367 4.143333 GGCGGCGACTAGGAAGCA 62.143 66.667 12.98 0.00 0.00 3.91
367 368 2.107141 GCGGCGACTAGGAAGCAT 59.893 61.111 12.98 0.00 0.00 3.79
368 369 1.951631 GCGGCGACTAGGAAGCATC 60.952 63.158 12.98 0.00 0.00 3.91
369 370 1.437573 CGGCGACTAGGAAGCATCA 59.562 57.895 0.00 0.00 0.00 3.07
370 371 0.872021 CGGCGACTAGGAAGCATCAC 60.872 60.000 0.00 0.00 0.00 3.06
371 372 0.872021 GGCGACTAGGAAGCATCACG 60.872 60.000 8.27 0.00 0.00 4.35
372 373 0.179134 GCGACTAGGAAGCATCACGT 60.179 55.000 0.00 0.00 0.00 4.49
373 374 1.828832 CGACTAGGAAGCATCACGTC 58.171 55.000 0.00 0.00 0.00 4.34
374 375 1.534175 CGACTAGGAAGCATCACGTCC 60.534 57.143 0.00 0.00 46.45 4.79
379 380 1.653151 GGAAGCATCACGTCCCTAAC 58.347 55.000 0.00 0.00 40.76 2.34
380 381 1.066430 GGAAGCATCACGTCCCTAACA 60.066 52.381 0.00 0.00 40.76 2.41
381 382 2.000447 GAAGCATCACGTCCCTAACAC 59.000 52.381 0.00 0.00 0.00 3.32
382 383 0.108804 AGCATCACGTCCCTAACACG 60.109 55.000 0.00 0.00 43.13 4.49
383 384 1.693083 GCATCACGTCCCTAACACGC 61.693 60.000 0.00 0.00 41.10 5.34
384 385 1.153901 ATCACGTCCCTAACACGCG 60.154 57.895 3.53 3.53 41.10 6.01
385 386 2.552585 ATCACGTCCCTAACACGCGG 62.553 60.000 12.47 1.27 41.10 6.46
386 387 3.297620 ACGTCCCTAACACGCGGT 61.298 61.111 12.47 2.05 41.10 5.68
387 388 2.048877 CGTCCCTAACACGCGGTT 60.049 61.111 12.47 14.39 43.62 4.44
388 389 1.665599 CGTCCCTAACACGCGGTTT 60.666 57.895 12.47 5.24 40.96 3.27
389 390 0.388391 CGTCCCTAACACGCGGTTTA 60.388 55.000 12.47 6.27 40.96 2.01
390 391 1.353076 GTCCCTAACACGCGGTTTAG 58.647 55.000 12.47 15.78 40.96 1.85
391 392 0.390209 TCCCTAACACGCGGTTTAGC 60.390 55.000 12.47 0.00 40.96 3.09
400 401 3.845472 CGGTTTAGCGCCGGTTCG 61.845 66.667 2.29 0.00 44.98 3.95
401 402 2.739671 GGTTTAGCGCCGGTTCGT 60.740 61.111 2.29 0.00 0.00 3.85
402 403 2.733671 GGTTTAGCGCCGGTTCGTC 61.734 63.158 2.29 0.00 0.00 4.20
403 404 2.432972 TTTAGCGCCGGTTCGTCC 60.433 61.111 2.29 0.00 0.00 4.79
404 405 3.938019 TTTAGCGCCGGTTCGTCCC 62.938 63.158 2.29 0.00 0.00 4.46
417 418 2.750237 GTCCCAGGCGGCGATTTT 60.750 61.111 12.98 0.00 0.00 1.82
418 419 1.450669 GTCCCAGGCGGCGATTTTA 60.451 57.895 12.98 0.00 0.00 1.52
419 420 1.450669 TCCCAGGCGGCGATTTTAC 60.451 57.895 12.98 0.00 0.00 2.01
420 421 2.707039 CCAGGCGGCGATTTTACG 59.293 61.111 12.98 0.00 0.00 3.18
428 429 3.493213 CGATTTTACGCGCCCCTT 58.507 55.556 5.73 0.00 0.00 3.95
429 430 1.798087 CGATTTTACGCGCCCCTTT 59.202 52.632 5.73 0.00 0.00 3.11
430 431 0.169451 CGATTTTACGCGCCCCTTTT 59.831 50.000 5.73 0.00 0.00 2.27
431 432 1.624487 GATTTTACGCGCCCCTTTTG 58.376 50.000 5.73 0.00 0.00 2.44
432 433 0.245266 ATTTTACGCGCCCCTTTTGG 59.755 50.000 5.73 0.00 39.97 3.28
442 443 3.310307 CCTTTTGGGGCCAACGGG 61.310 66.667 4.39 0.00 35.46 5.28
452 453 2.825836 CCAACGGGCTGGAGATGC 60.826 66.667 0.00 0.00 38.96 3.91
453 454 2.270205 CAACGGGCTGGAGATGCT 59.730 61.111 0.00 0.00 0.00 3.79
488 489 2.288458 ACACAATTACACGAACAACCGG 59.712 45.455 0.00 0.00 0.00 5.28
526 528 2.996621 GTTGACATCCTCTCTTCCGTTG 59.003 50.000 0.00 0.00 0.00 4.10
557 559 1.226311 GACCAGAATCCCATTCCCCT 58.774 55.000 0.00 0.00 40.13 4.79
623 626 2.278245 ACCTTTCCTCCACATCCATCA 58.722 47.619 0.00 0.00 0.00 3.07
637 644 4.141228 ACATCCATCAATCAATCTCCTGCT 60.141 41.667 0.00 0.00 0.00 4.24
791 808 2.391389 GCCAACTGGTACGCTGCTC 61.391 63.158 0.00 0.00 37.57 4.26
793 810 1.016130 CCAACTGGTACGCTGCTCTG 61.016 60.000 0.00 0.00 0.00 3.35
797 822 1.134965 ACTGGTACGCTGCTCTGATTC 60.135 52.381 0.00 0.00 0.00 2.52
801 826 0.530744 TACGCTGCTCTGATTCCGTT 59.469 50.000 0.00 0.00 0.00 4.44
827 852 4.141733 CCTTTTCCATTCCACTGTTTGGTT 60.142 41.667 0.00 0.00 46.97 3.67
874 924 1.126846 GTGACCAATTTGAGCGACTCG 59.873 52.381 0.00 0.00 32.35 4.18
885 935 2.916423 CGACTCGCATCGCATGAC 59.084 61.111 0.00 0.00 34.90 3.06
886 936 2.909986 CGACTCGCATCGCATGACG 61.910 63.158 0.00 0.00 45.62 4.35
911 961 0.801067 AGTGTTACGGAAGCGCGATC 60.801 55.000 12.10 7.11 0.00 3.69
915 965 0.659417 TTACGGAAGCGCGATCGATC 60.659 55.000 21.57 15.68 38.10 3.69
1131 1181 3.007398 GGAAGAGCATGAACCCGATCTAT 59.993 47.826 0.00 0.00 0.00 1.98
1220 1273 2.526120 GCTCCATACGAAGCCACGC 61.526 63.158 0.00 0.00 36.70 5.34
1221 1274 1.883084 CTCCATACGAAGCCACGCC 60.883 63.158 0.00 0.00 36.70 5.68
1222 1275 3.261951 CCATACGAAGCCACGCCG 61.262 66.667 0.00 0.00 36.70 6.46
1223 1276 2.202690 CATACGAAGCCACGCCGA 60.203 61.111 0.00 0.00 36.70 5.54
1698 1751 1.742880 CGCCAGGTGACCAGACATG 60.743 63.158 3.63 0.00 0.00 3.21
1699 1752 1.679311 GCCAGGTGACCAGACATGA 59.321 57.895 3.63 0.00 28.87 3.07
1701 1754 0.036010 CCAGGTGACCAGACATGACC 60.036 60.000 3.63 0.00 28.87 4.02
1702 1755 0.979665 CAGGTGACCAGACATGACCT 59.020 55.000 3.63 0.00 37.53 3.85
1706 1759 0.976641 TGACCAGACATGACCTGACC 59.023 55.000 17.24 10.71 33.65 4.02
1707 1760 1.270907 GACCAGACATGACCTGACCT 58.729 55.000 17.24 4.01 33.65 3.85
1708 1761 2.225267 TGACCAGACATGACCTGACCTA 60.225 50.000 17.24 3.27 33.65 3.08
1709 1762 2.428890 GACCAGACATGACCTGACCTAG 59.571 54.545 17.24 6.52 33.65 3.02
1710 1763 2.225394 ACCAGACATGACCTGACCTAGT 60.225 50.000 17.24 7.00 33.65 2.57
1711 1764 2.167281 CCAGACATGACCTGACCTAGTG 59.833 54.545 17.24 0.00 33.65 2.74
1712 1765 2.828520 CAGACATGACCTGACCTAGTGT 59.171 50.000 0.00 0.00 33.65 3.55
1781 1838 3.853355 AGAAAGAATCTCCGCCATGAT 57.147 42.857 0.00 0.00 30.46 2.45
1782 1839 4.963318 AGAAAGAATCTCCGCCATGATA 57.037 40.909 0.00 0.00 30.46 2.15
2631 2807 0.463204 CTCACCTCATGCTGATCCGT 59.537 55.000 0.00 0.00 0.00 4.69
2742 3153 5.068198 CCCCATCTCTGTCCATGTTATTTTG 59.932 44.000 0.00 0.00 0.00 2.44
2783 3748 2.015736 AGCCTTCGTATGTTGCAGAG 57.984 50.000 0.00 0.00 0.00 3.35
2808 3773 3.376234 CAGATCCATTGTTGCACTGTAGG 59.624 47.826 0.00 0.00 0.00 3.18
2810 3775 0.527565 CCATTGTTGCACTGTAGGGC 59.472 55.000 0.00 0.00 0.00 5.19
2825 3790 5.048846 TGTAGGGCTGAAGTTTCTTTTCT 57.951 39.130 0.00 0.00 0.00 2.52
2826 3791 5.445964 TGTAGGGCTGAAGTTTCTTTTCTT 58.554 37.500 0.00 0.00 0.00 2.52
2863 3828 6.929338 TCACCGGGGAAGATCCATATATATA 58.071 40.000 2.24 0.00 38.64 0.86
2864 3829 7.544650 TCACCGGGGAAGATCCATATATATAT 58.455 38.462 2.24 0.00 38.64 0.86
2865 3830 8.684378 TCACCGGGGAAGATCCATATATATATA 58.316 37.037 2.24 4.92 38.64 0.86
2913 3878 2.356844 GGGGCTAGAAAATTTCGGACCT 60.357 50.000 19.76 0.00 36.29 3.85
2940 3910 4.159108 CCCCGTCCTAGCCTCCCT 62.159 72.222 0.00 0.00 0.00 4.20
2980 3950 3.148279 CGACCTCCCTCCCTTCGG 61.148 72.222 0.00 0.00 0.00 4.30
2993 3963 4.348495 TTCGGCCCCCTTCCTCCT 62.348 66.667 0.00 0.00 0.00 3.69
2997 3967 4.760220 GCCCCCTTCCTCCTCCCA 62.760 72.222 0.00 0.00 0.00 4.37
2998 3968 2.127297 CCCCCTTCCTCCTCCCAA 59.873 66.667 0.00 0.00 0.00 4.12
2999 3969 1.309102 CCCCCTTCCTCCTCCCAAT 60.309 63.158 0.00 0.00 0.00 3.16
3000 3970 0.926220 CCCCCTTCCTCCTCCCAATT 60.926 60.000 0.00 0.00 0.00 2.32
3001 3971 1.010795 CCCCTTCCTCCTCCCAATTT 58.989 55.000 0.00 0.00 0.00 1.82
3005 3977 1.925959 CTTCCTCCTCCCAATTTCCCT 59.074 52.381 0.00 0.00 0.00 4.20
3056 4028 2.037049 TACGGCGGTGGGACCTTA 59.963 61.111 13.24 0.00 35.66 2.69
3297 4337 4.069232 CGCGGTGAGGAGGAGCAA 62.069 66.667 0.00 0.00 0.00 3.91
3299 4339 2.948720 GCGGTGAGGAGGAGCAAGT 61.949 63.158 0.00 0.00 0.00 3.16
3300 4340 1.216710 CGGTGAGGAGGAGCAAGTC 59.783 63.158 0.00 0.00 0.00 3.01
3301 4341 1.216710 GGTGAGGAGGAGCAAGTCG 59.783 63.158 0.00 0.00 0.00 4.18
3302 4342 1.216710 GTGAGGAGGAGCAAGTCGG 59.783 63.158 0.00 0.00 0.00 4.79
3303 4343 1.076727 TGAGGAGGAGCAAGTCGGA 59.923 57.895 0.00 0.00 0.00 4.55
3310 4354 3.316573 GAGCAAGTCGGACAGGGGG 62.317 68.421 11.27 0.00 0.00 5.40
3370 4416 1.568504 ACTTTACGGGCATCTCAGGA 58.431 50.000 0.00 0.00 0.00 3.86
3375 4421 2.764128 GGGCATCTCAGGACCCGA 60.764 66.667 0.00 0.00 31.32 5.14
3483 4545 2.355986 ATGCCAATGGTGCTGCTGG 61.356 57.895 0.00 0.30 0.00 4.85
3525 4587 2.985847 GTTGTGCAGGCCCCACTC 60.986 66.667 20.89 12.44 34.38 3.51
3563 4625 1.285950 GGCGTGGGAAGCTTCAAAC 59.714 57.895 27.02 21.28 34.52 2.93
3567 4629 1.901464 TGGGAAGCTTCAAACCCGC 60.901 57.895 27.02 9.49 44.70 6.13
3605 4668 1.626356 ATGGTATGGTGGCGTGCTCT 61.626 55.000 0.00 0.00 0.00 4.09
3644 4707 2.511637 GGTTGGGATCAGGAGAAATCCT 59.488 50.000 0.00 0.00 41.10 3.24
3652 4715 0.984230 AGGAGAAATCCTTGTCGGCA 59.016 50.000 0.00 0.00 36.56 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.504916 CTGACGAGCCGGGCAGAG 62.505 72.222 23.09 13.93 36.19 3.35
19 20 4.070552 ACCTTCGGCCTGACGAGC 62.071 66.667 0.00 0.00 44.47 5.03
20 21 2.125912 CACCTTCGGCCTGACGAG 60.126 66.667 0.00 0.00 44.47 4.18
21 22 3.691342 CCACCTTCGGCCTGACGA 61.691 66.667 0.00 0.00 41.76 4.20
22 23 3.649277 CTCCACCTTCGGCCTGACG 62.649 68.421 0.00 0.00 0.00 4.35
23 24 2.266055 CTCCACCTTCGGCCTGAC 59.734 66.667 0.00 0.00 0.00 3.51
24 25 2.203788 ACTCCACCTTCGGCCTGA 60.204 61.111 0.00 0.00 0.00 3.86
25 26 2.266055 GACTCCACCTTCGGCCTG 59.734 66.667 0.00 0.00 0.00 4.85
26 27 3.003763 GGACTCCACCTTCGGCCT 61.004 66.667 0.00 0.00 0.00 5.19
27 28 4.452733 CGGACTCCACCTTCGGCC 62.453 72.222 0.00 0.00 0.00 6.13
28 29 4.452733 CCGGACTCCACCTTCGGC 62.453 72.222 0.00 0.00 34.17 5.54
29 30 4.452733 GCCGGACTCCACCTTCGG 62.453 72.222 5.05 0.00 43.13 4.30
30 31 4.452733 GGCCGGACTCCACCTTCG 62.453 72.222 5.05 0.00 0.00 3.79
31 32 3.003763 AGGCCGGACTCCACCTTC 61.004 66.667 2.12 0.00 0.00 3.46
32 33 3.003763 GAGGCCGGACTCCACCTT 61.004 66.667 28.29 0.00 30.95 3.50
51 52 1.452953 TATGGCCTCGTACTCCGCAG 61.453 60.000 3.32 0.00 36.19 5.18
52 53 1.452953 CTATGGCCTCGTACTCCGCA 61.453 60.000 3.32 0.00 36.19 5.69
53 54 1.286260 CTATGGCCTCGTACTCCGC 59.714 63.158 3.32 0.00 36.19 5.54
54 55 1.286260 GCTATGGCCTCGTACTCCG 59.714 63.158 3.32 0.00 38.13 4.63
80 81 4.516195 GGCCTCGTCGGAGAAGCC 62.516 72.222 0.00 5.22 43.27 4.35
81 82 4.856607 CGGCCTCGTCGGAGAAGC 62.857 72.222 0.00 0.00 43.27 3.86
82 83 4.856607 GCGGCCTCGTCGGAGAAG 62.857 72.222 0.00 0.00 43.27 2.85
88 89 4.137872 TTTAGGGCGGCCTCGTCG 62.138 66.667 36.44 0.00 42.74 5.12
89 90 2.202892 CTTTAGGGCGGCCTCGTC 60.203 66.667 36.44 3.39 40.80 4.20
90 91 3.001406 ACTTTAGGGCGGCCTCGT 61.001 61.111 36.44 25.50 38.89 4.18
91 92 2.511600 CACTTTAGGGCGGCCTCG 60.512 66.667 36.44 24.83 39.81 4.63
92 93 2.124695 CCACTTTAGGGCGGCCTC 60.125 66.667 36.44 5.22 0.00 4.70
93 94 2.609610 TCCACTTTAGGGCGGCCT 60.610 61.111 34.70 34.70 0.00 5.19
94 95 2.437895 GTCCACTTTAGGGCGGCC 60.438 66.667 22.67 22.67 0.00 6.13
98 99 1.745489 CCTGCGTCCACTTTAGGGC 60.745 63.158 0.00 0.00 0.00 5.19
99 100 0.391263 GTCCTGCGTCCACTTTAGGG 60.391 60.000 0.00 0.00 0.00 3.53
100 101 0.736325 CGTCCTGCGTCCACTTTAGG 60.736 60.000 0.00 0.00 35.54 2.69
101 102 0.242825 TCGTCCTGCGTCCACTTTAG 59.757 55.000 0.00 0.00 42.13 1.85
102 103 0.038892 GTCGTCCTGCGTCCACTTTA 60.039 55.000 0.00 0.00 42.13 1.85
103 104 1.300697 GTCGTCCTGCGTCCACTTT 60.301 57.895 0.00 0.00 42.13 2.66
104 105 0.892358 TAGTCGTCCTGCGTCCACTT 60.892 55.000 0.00 0.00 42.13 3.16
105 106 1.303074 TAGTCGTCCTGCGTCCACT 60.303 57.895 0.00 0.00 42.13 4.00
106 107 1.154073 GTAGTCGTCCTGCGTCCAC 60.154 63.158 0.00 0.00 42.13 4.02
107 108 2.338015 GGTAGTCGTCCTGCGTCCA 61.338 63.158 0.00 0.00 42.13 4.02
108 109 1.593296 AAGGTAGTCGTCCTGCGTCC 61.593 60.000 0.00 0.00 42.13 4.79
109 110 0.179169 GAAGGTAGTCGTCCTGCGTC 60.179 60.000 0.00 0.00 42.13 5.19
110 111 1.881602 GAAGGTAGTCGTCCTGCGT 59.118 57.895 0.00 0.00 42.13 5.24
111 112 1.226323 CGAAGGTAGTCGTCCTGCG 60.226 63.158 0.00 0.00 45.84 5.18
112 113 1.516603 GCGAAGGTAGTCGTCCTGC 60.517 63.158 0.00 0.00 43.06 4.85
113 114 1.226323 CGCGAAGGTAGTCGTCCTG 60.226 63.158 0.00 0.00 43.06 3.86
114 115 0.747283 ATCGCGAAGGTAGTCGTCCT 60.747 55.000 15.24 0.00 43.06 3.85
115 116 0.591741 CATCGCGAAGGTAGTCGTCC 60.592 60.000 15.24 0.00 43.06 4.79
116 117 0.376152 TCATCGCGAAGGTAGTCGTC 59.624 55.000 15.24 0.00 43.06 4.20
117 118 0.377554 CTCATCGCGAAGGTAGTCGT 59.622 55.000 15.24 0.00 43.06 4.34
118 119 0.656259 TCTCATCGCGAAGGTAGTCG 59.344 55.000 15.24 0.00 43.98 4.18
119 120 2.605823 CCATCTCATCGCGAAGGTAGTC 60.606 54.545 15.24 0.00 0.00 2.59
120 121 1.338337 CCATCTCATCGCGAAGGTAGT 59.662 52.381 15.24 0.00 0.00 2.73
121 122 1.338337 ACCATCTCATCGCGAAGGTAG 59.662 52.381 15.24 8.48 0.00 3.18
122 123 1.337071 GACCATCTCATCGCGAAGGTA 59.663 52.381 15.24 0.20 0.00 3.08
123 124 0.103208 GACCATCTCATCGCGAAGGT 59.897 55.000 15.24 14.29 0.00 3.50
124 125 0.598680 GGACCATCTCATCGCGAAGG 60.599 60.000 15.24 9.12 0.00 3.46
125 126 0.936764 CGGACCATCTCATCGCGAAG 60.937 60.000 15.24 9.61 0.00 3.79
126 127 1.065764 CGGACCATCTCATCGCGAA 59.934 57.895 15.24 0.00 0.00 4.70
127 128 2.721859 CGGACCATCTCATCGCGA 59.278 61.111 13.09 13.09 0.00 5.87
128 129 2.355126 CCGGACCATCTCATCGCG 60.355 66.667 0.00 0.00 0.00 5.87
129 130 2.663188 GCCGGACCATCTCATCGC 60.663 66.667 5.05 0.00 0.00 4.58
130 131 1.300465 CTGCCGGACCATCTCATCG 60.300 63.158 5.05 0.00 0.00 3.84
131 132 1.596477 GCTGCCGGACCATCTCATC 60.596 63.158 5.05 0.00 0.00 2.92
132 133 2.507944 GCTGCCGGACCATCTCAT 59.492 61.111 5.05 0.00 0.00 2.90
133 134 4.147449 CGCTGCCGGACCATCTCA 62.147 66.667 5.05 0.00 0.00 3.27
151 152 1.814772 CTATCTCCTGCAGGGCTCGG 61.815 65.000 32.23 15.85 35.41 4.63
152 153 1.664873 CTATCTCCTGCAGGGCTCG 59.335 63.158 32.23 17.64 35.41 5.03
153 154 1.370810 GCTATCTCCTGCAGGGCTC 59.629 63.158 32.23 12.00 35.41 4.70
154 155 2.146061 GGCTATCTCCTGCAGGGCT 61.146 63.158 32.23 18.65 35.41 5.19
155 156 2.429494 GGCTATCTCCTGCAGGGC 59.571 66.667 32.23 25.18 35.41 5.19
156 157 2.739784 CGGCTATCTCCTGCAGGG 59.260 66.667 32.23 22.04 35.41 4.45
157 158 2.030262 GCGGCTATCTCCTGCAGG 59.970 66.667 27.87 27.87 0.00 4.85
158 159 2.030262 GGCGGCTATCTCCTGCAG 59.970 66.667 6.78 6.78 0.00 4.41
159 160 3.550431 GGGCGGCTATCTCCTGCA 61.550 66.667 9.56 0.00 0.00 4.41
160 161 4.671569 CGGGCGGCTATCTCCTGC 62.672 72.222 9.56 0.00 0.00 4.85
161 162 4.671569 GCGGGCGGCTATCTCCTG 62.672 72.222 9.56 0.00 39.11 3.86
164 165 4.671569 CTGGCGGGCGGCTATCTC 62.672 72.222 16.89 0.19 42.94 2.75
189 190 3.701604 ATGCCGTTCTCGTCCTCGC 62.702 63.158 0.00 0.00 36.96 5.03
190 191 1.874019 CATGCCGTTCTCGTCCTCG 60.874 63.158 0.00 0.00 38.55 4.63
191 192 1.519455 CCATGCCGTTCTCGTCCTC 60.519 63.158 0.00 0.00 35.01 3.71
192 193 2.283529 ACCATGCCGTTCTCGTCCT 61.284 57.895 0.00 0.00 35.01 3.85
193 194 2.100631 CACCATGCCGTTCTCGTCC 61.101 63.158 0.00 0.00 35.01 4.79
194 195 0.460284 ATCACCATGCCGTTCTCGTC 60.460 55.000 0.00 0.00 35.01 4.20
195 196 0.460284 GATCACCATGCCGTTCTCGT 60.460 55.000 0.00 0.00 35.01 4.18
196 197 1.154205 GGATCACCATGCCGTTCTCG 61.154 60.000 0.00 0.00 35.97 4.04
197 198 0.179000 AGGATCACCATGCCGTTCTC 59.821 55.000 0.00 0.00 38.94 2.87
198 199 0.179000 GAGGATCACCATGCCGTTCT 59.821 55.000 0.00 0.00 38.94 3.01
199 200 1.154205 CGAGGATCACCATGCCGTTC 61.154 60.000 0.00 0.00 38.94 3.95
200 201 1.153369 CGAGGATCACCATGCCGTT 60.153 57.895 0.00 0.00 38.94 4.44
201 202 2.058001 TCGAGGATCACCATGCCGT 61.058 57.895 0.00 0.00 38.94 5.68
202 203 1.592669 GTCGAGGATCACCATGCCG 60.593 63.158 0.00 0.00 38.94 5.69
203 204 0.531532 CTGTCGAGGATCACCATGCC 60.532 60.000 0.00 0.00 38.94 4.40
204 205 1.156645 GCTGTCGAGGATCACCATGC 61.157 60.000 0.00 0.00 38.94 4.06
205 206 0.873312 CGCTGTCGAGGATCACCATG 60.873 60.000 0.00 0.00 38.94 3.66
206 207 1.037579 TCGCTGTCGAGGATCACCAT 61.038 55.000 0.00 0.00 40.21 3.55
207 208 1.677633 TCGCTGTCGAGGATCACCA 60.678 57.895 0.00 0.00 40.21 4.17
208 209 1.226717 GTCGCTGTCGAGGATCACC 60.227 63.158 0.00 0.00 46.46 4.02
209 210 4.386245 GTCGCTGTCGAGGATCAC 57.614 61.111 0.00 0.00 46.46 3.06
216 217 3.785499 CGTCCTCGTCGCTGTCGA 61.785 66.667 0.00 0.00 43.28 4.20
217 218 3.703939 CTCGTCCTCGTCGCTGTCG 62.704 68.421 0.00 0.00 38.33 4.35
218 219 2.098680 CTCGTCCTCGTCGCTGTC 59.901 66.667 0.00 0.00 38.33 3.51
219 220 3.432588 CCTCGTCCTCGTCGCTGT 61.433 66.667 0.00 0.00 38.33 4.40
220 221 3.125573 TCCTCGTCCTCGTCGCTG 61.126 66.667 0.00 0.00 38.33 5.18
221 222 3.126225 GTCCTCGTCCTCGTCGCT 61.126 66.667 0.00 0.00 38.33 4.93
222 223 4.517703 CGTCCTCGTCCTCGTCGC 62.518 72.222 0.00 0.00 38.33 5.19
223 224 4.517703 GCGTCCTCGTCCTCGTCG 62.518 72.222 0.00 0.00 39.49 5.12
224 225 4.176851 GGCGTCCTCGTCCTCGTC 62.177 72.222 0.00 0.00 39.49 4.20
233 234 4.452733 CAGTTCGGGGGCGTCCTC 62.453 72.222 5.77 0.00 35.33 3.71
235 236 4.754667 GACAGTTCGGGGGCGTCC 62.755 72.222 0.00 0.00 0.00 4.79
236 237 4.754667 GGACAGTTCGGGGGCGTC 62.755 72.222 0.00 0.00 0.00 5.19
238 239 4.323477 TTGGACAGTTCGGGGGCG 62.323 66.667 0.00 0.00 0.00 6.13
239 240 2.671963 GTTGGACAGTTCGGGGGC 60.672 66.667 0.00 0.00 0.00 5.80
240 241 2.033602 GGTTGGACAGTTCGGGGG 59.966 66.667 0.00 0.00 0.00 5.40
241 242 2.033602 GGGTTGGACAGTTCGGGG 59.966 66.667 0.00 0.00 0.00 5.73
242 243 2.358247 CGGGTTGGACAGTTCGGG 60.358 66.667 0.00 0.00 0.00 5.14
243 244 3.047877 GCGGGTTGGACAGTTCGG 61.048 66.667 0.00 0.00 0.00 4.30
244 245 3.047877 GGCGGGTTGGACAGTTCG 61.048 66.667 0.00 0.00 0.00 3.95
245 246 3.047877 CGGCGGGTTGGACAGTTC 61.048 66.667 0.00 0.00 0.00 3.01
276 277 4.355720 TGCTGCTCCCTTGCCCAG 62.356 66.667 0.00 0.00 0.00 4.45
277 278 4.355720 CTGCTGCTCCCTTGCCCA 62.356 66.667 0.00 0.00 0.00 5.36
279 280 2.971598 TACCTGCTGCTCCCTTGCC 61.972 63.158 0.00 0.00 0.00 4.52
280 281 1.746991 GTACCTGCTGCTCCCTTGC 60.747 63.158 0.00 0.00 0.00 4.01
281 282 1.448540 CGTACCTGCTGCTCCCTTG 60.449 63.158 0.00 0.00 0.00 3.61
282 283 1.192146 TTCGTACCTGCTGCTCCCTT 61.192 55.000 0.00 0.00 0.00 3.95
283 284 1.609501 TTCGTACCTGCTGCTCCCT 60.610 57.895 0.00 0.00 0.00 4.20
284 285 1.448013 GTTCGTACCTGCTGCTCCC 60.448 63.158 0.00 0.00 0.00 4.30
285 286 1.805945 CGTTCGTACCTGCTGCTCC 60.806 63.158 0.00 0.00 0.00 4.70
286 287 1.080705 ACGTTCGTACCTGCTGCTC 60.081 57.895 0.00 0.00 0.00 4.26
287 288 1.372997 CACGTTCGTACCTGCTGCT 60.373 57.895 0.00 0.00 0.00 4.24
288 289 2.380410 CCACGTTCGTACCTGCTGC 61.380 63.158 0.00 0.00 0.00 5.25
289 290 1.736645 CCCACGTTCGTACCTGCTG 60.737 63.158 0.00 0.00 0.00 4.41
290 291 2.654877 CCCACGTTCGTACCTGCT 59.345 61.111 0.00 0.00 0.00 4.24
291 292 2.433664 CCCCACGTTCGTACCTGC 60.434 66.667 0.00 0.00 0.00 4.85
292 293 2.433664 GCCCCACGTTCGTACCTG 60.434 66.667 0.00 0.00 0.00 4.00
293 294 3.698820 GGCCCCACGTTCGTACCT 61.699 66.667 0.00 0.00 0.00 3.08
298 299 4.770874 AATCCGGCCCCACGTTCG 62.771 66.667 0.00 0.00 0.00 3.95
299 300 1.974875 AAAATCCGGCCCCACGTTC 60.975 57.895 0.00 0.00 0.00 3.95
300 301 2.116556 AAAATCCGGCCCCACGTT 59.883 55.556 0.00 0.00 0.00 3.99
301 302 2.675075 CAAAATCCGGCCCCACGT 60.675 61.111 0.00 0.00 0.00 4.49
302 303 1.811645 AAACAAAATCCGGCCCCACG 61.812 55.000 0.00 0.00 0.00 4.94
303 304 0.394938 AAAACAAAATCCGGCCCCAC 59.605 50.000 0.00 0.00 0.00 4.61
304 305 1.132500 AAAAACAAAATCCGGCCCCA 58.868 45.000 0.00 0.00 0.00 4.96
321 322 9.565213 CATGTTGCATTTTGGTTTTCTTTAAAA 57.435 25.926 0.00 0.00 32.15 1.52
322 323 8.186821 CCATGTTGCATTTTGGTTTTCTTTAAA 58.813 29.630 0.00 0.00 0.00 1.52
323 324 7.201767 CCCATGTTGCATTTTGGTTTTCTTTAA 60.202 33.333 8.11 0.00 0.00 1.52
324 325 6.261826 CCCATGTTGCATTTTGGTTTTCTTTA 59.738 34.615 8.11 0.00 0.00 1.85
325 326 5.067544 CCCATGTTGCATTTTGGTTTTCTTT 59.932 36.000 8.11 0.00 0.00 2.52
326 327 4.579753 CCCATGTTGCATTTTGGTTTTCTT 59.420 37.500 8.11 0.00 0.00 2.52
327 328 4.136051 CCCATGTTGCATTTTGGTTTTCT 58.864 39.130 8.11 0.00 0.00 2.52
328 329 3.252944 CCCCATGTTGCATTTTGGTTTTC 59.747 43.478 8.11 0.00 0.00 2.29
329 330 3.220940 CCCCATGTTGCATTTTGGTTTT 58.779 40.909 8.11 0.00 0.00 2.43
330 331 2.861274 CCCCATGTTGCATTTTGGTTT 58.139 42.857 8.11 0.00 0.00 3.27
331 332 1.545204 GCCCCATGTTGCATTTTGGTT 60.545 47.619 8.11 0.00 0.00 3.67
332 333 0.036590 GCCCCATGTTGCATTTTGGT 59.963 50.000 8.11 0.00 0.00 3.67
333 334 1.020333 CGCCCCATGTTGCATTTTGG 61.020 55.000 4.79 0.00 0.00 3.28
334 335 1.020333 CCGCCCCATGTTGCATTTTG 61.020 55.000 4.79 0.00 0.00 2.44
335 336 1.296068 CCGCCCCATGTTGCATTTT 59.704 52.632 4.79 0.00 0.00 1.82
336 337 2.980475 CCGCCCCATGTTGCATTT 59.020 55.556 4.79 0.00 0.00 2.32
337 338 3.773404 GCCGCCCCATGTTGCATT 61.773 61.111 4.79 0.00 0.00 3.56
341 342 3.673956 TAGTCGCCGCCCCATGTTG 62.674 63.158 0.00 0.00 0.00 3.33
342 343 3.385749 CTAGTCGCCGCCCCATGTT 62.386 63.158 0.00 0.00 0.00 2.71
343 344 3.849951 CTAGTCGCCGCCCCATGT 61.850 66.667 0.00 0.00 0.00 3.21
344 345 4.609018 CCTAGTCGCCGCCCCATG 62.609 72.222 0.00 0.00 0.00 3.66
345 346 4.853142 TCCTAGTCGCCGCCCCAT 62.853 66.667 0.00 0.00 0.00 4.00
347 348 4.222847 CTTCCTAGTCGCCGCCCC 62.223 72.222 0.00 0.00 0.00 5.80
348 349 4.893601 GCTTCCTAGTCGCCGCCC 62.894 72.222 0.00 0.00 0.00 6.13
349 350 3.447025 ATGCTTCCTAGTCGCCGCC 62.447 63.158 0.00 0.00 0.00 6.13
350 351 1.951631 GATGCTTCCTAGTCGCCGC 60.952 63.158 0.00 0.00 0.00 6.53
351 352 0.872021 GTGATGCTTCCTAGTCGCCG 60.872 60.000 0.00 0.00 0.00 6.46
352 353 0.872021 CGTGATGCTTCCTAGTCGCC 60.872 60.000 0.00 0.00 0.00 5.54
353 354 0.179134 ACGTGATGCTTCCTAGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
354 355 1.534175 GGACGTGATGCTTCCTAGTCG 60.534 57.143 0.00 0.00 33.16 4.18
355 356 1.202428 GGGACGTGATGCTTCCTAGTC 60.202 57.143 0.00 4.35 35.95 2.59
356 357 0.824759 GGGACGTGATGCTTCCTAGT 59.175 55.000 0.00 0.00 35.95 2.57
357 358 1.115467 AGGGACGTGATGCTTCCTAG 58.885 55.000 0.00 0.00 35.95 3.02
358 359 2.429610 GTTAGGGACGTGATGCTTCCTA 59.570 50.000 0.00 0.00 35.95 2.94
359 360 1.207329 GTTAGGGACGTGATGCTTCCT 59.793 52.381 0.00 0.00 35.95 3.36
360 361 1.066430 TGTTAGGGACGTGATGCTTCC 60.066 52.381 0.00 0.00 35.00 3.46
361 362 2.000447 GTGTTAGGGACGTGATGCTTC 59.000 52.381 0.00 0.00 0.00 3.86
362 363 1.671850 CGTGTTAGGGACGTGATGCTT 60.672 52.381 0.00 0.00 32.06 3.91
363 364 0.108804 CGTGTTAGGGACGTGATGCT 60.109 55.000 0.00 0.00 32.06 3.79
364 365 1.693083 GCGTGTTAGGGACGTGATGC 61.693 60.000 0.00 0.00 39.08 3.91
365 366 2.369870 GCGTGTTAGGGACGTGATG 58.630 57.895 0.00 0.00 39.08 3.07
366 367 4.904466 GCGTGTTAGGGACGTGAT 57.096 55.556 0.00 0.00 39.08 3.06
368 369 2.807895 CCGCGTGTTAGGGACGTG 60.808 66.667 4.92 0.00 44.86 4.49
369 370 2.367868 AAACCGCGTGTTAGGGACGT 62.368 55.000 4.92 0.00 39.08 4.34
370 371 0.388391 TAAACCGCGTGTTAGGGACG 60.388 55.000 4.92 0.00 35.67 4.79
371 372 1.353076 CTAAACCGCGTGTTAGGGAC 58.647 55.000 14.94 0.00 35.67 4.46
372 373 0.390209 GCTAAACCGCGTGTTAGGGA 60.390 55.000 20.95 6.30 35.67 4.20
373 374 2.084013 GCTAAACCGCGTGTTAGGG 58.916 57.895 20.95 12.27 35.67 3.53
384 385 2.733671 GACGAACCGGCGCTAAACC 61.734 63.158 7.64 0.00 33.86 3.27
385 386 2.733671 GGACGAACCGGCGCTAAAC 61.734 63.158 7.64 0.00 34.63 2.01
386 387 2.432972 GGACGAACCGGCGCTAAA 60.433 61.111 7.64 0.00 34.63 1.85
387 388 4.440127 GGGACGAACCGGCGCTAA 62.440 66.667 7.64 0.00 44.47 3.09
400 401 1.450669 TAAAATCGCCGCCTGGGAC 60.451 57.895 0.00 0.00 38.94 4.46
401 402 1.450669 GTAAAATCGCCGCCTGGGA 60.451 57.895 0.00 0.00 40.60 4.37
402 403 2.819552 CGTAAAATCGCCGCCTGGG 61.820 63.158 0.00 0.00 39.58 4.45
403 404 2.707039 CGTAAAATCGCCGCCTGG 59.293 61.111 0.00 0.00 38.77 4.45
411 412 0.169451 AAAAGGGGCGCGTAAAATCG 59.831 50.000 8.43 0.00 0.00 3.34
412 413 1.624487 CAAAAGGGGCGCGTAAAATC 58.376 50.000 8.43 0.00 0.00 2.17
413 414 0.245266 CCAAAAGGGGCGCGTAAAAT 59.755 50.000 8.43 0.00 0.00 1.82
414 415 1.660917 CCAAAAGGGGCGCGTAAAA 59.339 52.632 8.43 0.00 0.00 1.52
415 416 3.356837 CCAAAAGGGGCGCGTAAA 58.643 55.556 8.43 0.00 0.00 2.01
425 426 3.310307 CCCGTTGGCCCCAAAAGG 61.310 66.667 0.00 13.04 37.70 3.11
435 436 2.825836 GCATCTCCAGCCCGTTGG 60.826 66.667 0.00 0.00 39.70 3.77
436 437 1.817099 GAGCATCTCCAGCCCGTTG 60.817 63.158 0.00 0.00 0.00 4.10
437 438 2.586792 GAGCATCTCCAGCCCGTT 59.413 61.111 0.00 0.00 0.00 4.44
448 449 3.430218 GTGTCTGTGTGTGTTAGAGCATC 59.570 47.826 0.00 0.00 0.00 3.91
449 450 3.181466 TGTGTCTGTGTGTGTTAGAGCAT 60.181 43.478 0.00 0.00 0.00 3.79
450 451 2.167487 TGTGTCTGTGTGTGTTAGAGCA 59.833 45.455 0.00 0.00 0.00 4.26
451 452 2.821546 TGTGTCTGTGTGTGTTAGAGC 58.178 47.619 0.00 0.00 0.00 4.09
452 453 5.991328 AATTGTGTCTGTGTGTGTTAGAG 57.009 39.130 0.00 0.00 0.00 2.43
453 454 6.256975 GTGTAATTGTGTCTGTGTGTGTTAGA 59.743 38.462 0.00 0.00 0.00 2.10
623 626 2.579860 ACCAGGAAGCAGGAGATTGATT 59.420 45.455 0.00 0.00 0.00 2.57
637 644 2.197324 GGTTGCCACCACCAGGAA 59.803 61.111 1.17 0.00 43.61 3.36
791 808 3.153919 TGGAAAAGGGAAACGGAATCAG 58.846 45.455 0.00 0.00 0.00 2.90
793 810 4.381612 GGAATGGAAAAGGGAAACGGAATC 60.382 45.833 0.00 0.00 0.00 2.52
797 822 2.029380 GTGGAATGGAAAAGGGAAACGG 60.029 50.000 0.00 0.00 0.00 4.44
801 826 3.611025 ACAGTGGAATGGAAAAGGGAA 57.389 42.857 0.00 0.00 0.00 3.97
827 852 6.472887 ACAAAGAGAATTTCCTAACCGATGA 58.527 36.000 0.00 0.00 0.00 2.92
874 924 2.051614 CATGCCGTCATGCGATGC 60.052 61.111 10.48 7.27 43.00 3.91
881 931 1.640428 CGTAACACTCATGCCGTCAT 58.360 50.000 0.00 0.00 0.00 3.06
882 932 0.389296 CCGTAACACTCATGCCGTCA 60.389 55.000 0.00 0.00 0.00 4.35
883 933 0.108992 TCCGTAACACTCATGCCGTC 60.109 55.000 0.00 0.00 0.00 4.79
884 934 0.319083 TTCCGTAACACTCATGCCGT 59.681 50.000 0.00 0.00 0.00 5.68
885 935 0.999406 CTTCCGTAACACTCATGCCG 59.001 55.000 0.00 0.00 0.00 5.69
886 936 0.727398 GCTTCCGTAACACTCATGCC 59.273 55.000 0.00 0.00 0.00 4.40
911 961 7.408815 CGCTCTAAACTTCTAATCAATCGATCG 60.409 40.741 9.36 9.36 0.00 3.69
915 965 5.608418 CGCGCTCTAAACTTCTAATCAATCG 60.608 44.000 5.56 0.00 0.00 3.34
994 1044 3.589881 GATGCGCTCCATGCCACC 61.590 66.667 9.73 0.00 38.78 4.61
996 1046 2.515290 CTGATGCGCTCCATGCCA 60.515 61.111 9.73 0.00 38.78 4.92
1208 1261 4.764336 CGTCGGCGTGGCTTCGTA 62.764 66.667 6.85 0.00 0.00 3.43
1241 1294 1.896660 TTGTTGCTGTTCCCGCTCC 60.897 57.895 0.00 0.00 0.00 4.70
1407 1460 1.192146 GGAGCTCCACCAGGTACACA 61.192 60.000 28.43 0.00 33.01 3.72
1688 1741 1.270907 AGGTCAGGTCATGTCTGGTC 58.729 55.000 15.15 10.38 33.36 4.02
1692 1745 3.093057 GACACTAGGTCAGGTCATGTCT 58.907 50.000 0.00 0.00 46.19 3.41
1693 1746 3.512033 GACACTAGGTCAGGTCATGTC 57.488 52.381 0.00 0.00 46.19 3.06
1706 1759 4.187694 GGATGGCTTTGAAGAGACACTAG 58.812 47.826 0.00 0.00 37.53 2.57
1707 1760 3.582647 TGGATGGCTTTGAAGAGACACTA 59.417 43.478 0.00 0.00 37.53 2.74
1708 1761 2.373169 TGGATGGCTTTGAAGAGACACT 59.627 45.455 0.00 0.00 37.53 3.55
1709 1762 2.783135 TGGATGGCTTTGAAGAGACAC 58.217 47.619 0.00 0.00 37.53 3.67
1710 1763 3.726557 ATGGATGGCTTTGAAGAGACA 57.273 42.857 0.00 0.00 39.44 3.41
1711 1764 5.166398 CAAAATGGATGGCTTTGAAGAGAC 58.834 41.667 0.00 0.00 32.87 3.36
1712 1765 4.834496 ACAAAATGGATGGCTTTGAAGAGA 59.166 37.500 2.18 0.00 34.76 3.10
1765 1822 3.867600 GCACATATCATGGCGGAGATTCT 60.868 47.826 0.00 0.00 33.60 2.40
1766 1823 2.417933 GCACATATCATGGCGGAGATTC 59.582 50.000 0.00 0.00 33.60 2.52
1767 1824 2.224597 TGCACATATCATGGCGGAGATT 60.225 45.455 0.00 0.00 31.73 2.40
1781 1838 1.727880 GACGCGTAAAACCTGCACATA 59.272 47.619 13.97 0.00 0.00 2.29
1782 1839 0.515564 GACGCGTAAAACCTGCACAT 59.484 50.000 13.97 0.00 0.00 3.21
2742 3153 8.193438 AGGCTTTGCTAGAAATATTTGATGAAC 58.807 33.333 5.17 0.00 0.00 3.18
2787 3752 3.614092 CCTACAGTGCAACAATGGATCT 58.386 45.455 0.00 0.00 41.43 2.75
2791 3756 0.527565 GCCCTACAGTGCAACAATGG 59.472 55.000 0.00 0.00 41.43 3.16
2808 3773 6.384258 AGAAGAAGAAAAGAAACTTCAGCC 57.616 37.500 0.00 0.00 43.13 4.85
2825 3790 4.287585 TCCCCGGTGATTTAGAAAGAAGAA 59.712 41.667 0.00 0.00 0.00 2.52
2826 3791 3.841845 TCCCCGGTGATTTAGAAAGAAGA 59.158 43.478 0.00 0.00 0.00 2.87
2863 3828 9.920946 ATACTCCATAACACTTTTGACCAATAT 57.079 29.630 0.00 0.00 0.00 1.28
2864 3829 9.173021 CATACTCCATAACACTTTTGACCAATA 57.827 33.333 0.00 0.00 0.00 1.90
2865 3830 7.888021 TCATACTCCATAACACTTTTGACCAAT 59.112 33.333 0.00 0.00 0.00 3.16
2867 3832 6.774673 TCATACTCCATAACACTTTTGACCA 58.225 36.000 0.00 0.00 0.00 4.02
2868 3833 6.316390 CCTCATACTCCATAACACTTTTGACC 59.684 42.308 0.00 0.00 0.00 4.02
2869 3834 6.316390 CCCTCATACTCCATAACACTTTTGAC 59.684 42.308 0.00 0.00 0.00 3.18
2871 3836 5.590259 CCCCTCATACTCCATAACACTTTTG 59.410 44.000 0.00 0.00 0.00 2.44
2875 3840 2.706190 GCCCCTCATACTCCATAACACT 59.294 50.000 0.00 0.00 0.00 3.55
2888 3853 3.202151 TCCGAAATTTTCTAGCCCCTCAT 59.798 43.478 7.50 0.00 0.00 2.90
2980 3950 4.760220 TGGGAGGAGGAAGGGGGC 62.760 72.222 0.00 0.00 0.00 5.80
2986 3956 1.640670 CAGGGAAATTGGGAGGAGGAA 59.359 52.381 0.00 0.00 0.00 3.36
2990 3960 1.302949 CGCAGGGAAATTGGGAGGA 59.697 57.895 0.00 0.00 0.00 3.71
3027 3999 2.927580 CGCCGTAGACACCACCTGT 61.928 63.158 0.00 0.00 34.96 4.00
3029 4001 3.379445 CCGCCGTAGACACCACCT 61.379 66.667 0.00 0.00 0.00 4.00
3101 4075 4.020617 CCAAGCCGAGCCTCACCA 62.021 66.667 0.00 0.00 0.00 4.17
3171 4184 4.431131 CCCACCGCCAAGGAGCAT 62.431 66.667 0.00 0.00 45.00 3.79
3189 4202 4.776322 CCCGCGCCACCAATCTGA 62.776 66.667 0.00 0.00 0.00 3.27
3225 4238 2.657143 CTAGGGCCTAGATCCGGATAC 58.343 57.143 32.78 11.23 36.26 2.24
3226 4239 1.063867 GCTAGGGCCTAGATCCGGATA 60.064 57.143 38.58 0.94 36.26 2.59
3228 4241 1.076906 GCTAGGGCCTAGATCCGGA 59.923 63.158 38.58 6.61 36.26 5.14
3231 4244 3.701454 CCGCTAGGGCCTAGATCC 58.299 66.667 38.58 22.34 36.26 3.36
3277 4312 4.803426 CTCCTCCTCACCGCGCAC 62.803 72.222 8.75 0.00 0.00 5.34
3351 4397 1.207329 GTCCTGAGATGCCCGTAAAGT 59.793 52.381 0.00 0.00 0.00 2.66
3459 4521 3.069946 CACCATTGGCATGCGGGT 61.070 61.111 12.44 13.38 0.00 5.28
3465 4527 2.355986 CCAGCAGCACCATTGGCAT 61.356 57.895 1.54 0.00 0.00 4.40
3613 4676 1.540367 ATCCCAACCTTCACCCCGA 60.540 57.895 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.