Multiple sequence alignment - TraesCS5D01G460200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G460200 chr5D 100.000 3296 0 0 1 3296 504440233 504443528 0.000000e+00 6087.0
1 TraesCS5D01G460200 chr5D 81.376 1090 132 39 700 1759 504232710 504233758 0.000000e+00 822.0
2 TraesCS5D01G460200 chr5D 82.787 244 37 3 1946 2188 504233885 504234124 2.580000e-51 213.0
3 TraesCS5D01G460200 chr5D 85.000 140 12 3 1907 2037 504442004 504442143 2.060000e-27 134.0
4 TraesCS5D01G460200 chr5D 85.000 140 12 3 1772 1911 504442139 504442269 2.060000e-27 134.0
5 TraesCS5D01G460200 chr5D 92.308 65 5 0 1694 1758 504441872 504441936 3.500000e-15 93.5
6 TraesCS5D01G460200 chr5D 92.308 65 5 0 1640 1704 504441926 504441990 3.500000e-15 93.5
7 TraesCS5D01G460200 chr5A 94.152 2736 117 18 593 3294 632268975 632271701 0.000000e+00 4126.0
8 TraesCS5D01G460200 chr5A 81.135 1198 142 46 753 1908 632198338 632199493 0.000000e+00 883.0
9 TraesCS5D01G460200 chr5A 80.631 222 19 7 1772 1993 632270286 632270483 2.050000e-32 150.0
10 TraesCS5D01G460200 chr5A 87.597 129 10 3 1907 2029 632270154 632270282 9.530000e-31 145.0
11 TraesCS5D01G460200 chr5A 89.011 91 7 3 1617 1704 632270050 632270140 3.480000e-20 110.0
12 TraesCS5D01G460200 chr5B 91.772 2759 125 42 466 3171 633658493 633661202 0.000000e+00 3744.0
13 TraesCS5D01G460200 chr5B 83.918 883 91 26 703 1552 633505660 633506524 0.000000e+00 797.0
14 TraesCS5D01G460200 chr5B 89.286 140 15 0 3155 3294 633661854 633661993 3.380000e-40 176.0
15 TraesCS5D01G460200 chr5B 77.740 292 34 19 1 270 633635761 633636043 2.050000e-32 150.0
16 TraesCS5D01G460200 chr5B 77.740 292 34 19 1 270 633645644 633645926 2.050000e-32 150.0
17 TraesCS5D01G460200 chr5B 92.647 68 5 0 1694 1761 633659651 633659718 7.530000e-17 99.0
18 TraesCS5D01G460200 chr5B 89.231 65 7 0 1617 1681 633659706 633659770 7.580000e-12 82.4
19 TraesCS5D01G460200 chr2A 78.782 476 96 5 2820 3293 755666880 755666408 6.870000e-82 315.0
20 TraesCS5D01G460200 chrUn 77.740 292 34 19 1 270 298409501 298409783 2.050000e-32 150.0
21 TraesCS5D01G460200 chrUn 77.740 292 34 19 1 270 353697240 353696958 2.050000e-32 150.0
22 TraesCS5D01G460200 chrUn 77.740 292 34 19 1 270 353699451 353699169 2.050000e-32 150.0
23 TraesCS5D01G460200 chr2B 89.583 96 9 1 3200 3294 766140257 766140162 1.610000e-23 121.0
24 TraesCS5D01G460200 chr2D 82.653 98 15 2 2937 3033 76760184 76760280 5.860000e-13 86.1
25 TraesCS5D01G460200 chr6D 85.938 64 7 1 2415 2478 325387436 325387375 2.120000e-07 67.6
26 TraesCS5D01G460200 chr6B 89.796 49 3 1 2415 2463 497891013 497891059 9.880000e-06 62.1
27 TraesCS5D01G460200 chr6A 92.857 42 1 1 2415 2456 463525301 463525262 3.550000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G460200 chr5D 504440233 504443528 3295 False 1308.40 6087 90.92320 1 3296 5 chr5D.!!$F2 3295
1 TraesCS5D01G460200 chr5D 504232710 504234124 1414 False 517.50 822 82.08150 700 2188 2 chr5D.!!$F1 1488
2 TraesCS5D01G460200 chr5A 632268975 632271701 2726 False 1132.75 4126 87.84775 593 3294 4 chr5A.!!$F2 2701
3 TraesCS5D01G460200 chr5A 632198338 632199493 1155 False 883.00 883 81.13500 753 1908 1 chr5A.!!$F1 1155
4 TraesCS5D01G460200 chr5B 633658493 633661993 3500 False 1025.35 3744 90.73400 466 3294 4 chr5B.!!$F4 2828
5 TraesCS5D01G460200 chr5B 633505660 633506524 864 False 797.00 797 83.91800 703 1552 1 chr5B.!!$F1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 554 0.393820 ACTTTTCAAGGCGGTACCGA 59.606 50.0 37.62 13.94 46.52 4.69 F
959 1009 0.900647 ACACTCCCGACAGGAAGAGG 60.901 60.0 0.00 0.00 46.94 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1511 0.101399 CGATGCTCTTGGCTACGACT 59.899 55.0 0.0 0.0 42.39 4.18 R
2854 3022 0.978146 CACCCGTCATCCTTCTCCCT 60.978 60.0 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 9.977762 GAATGAAAAACTCAAAAATGATATGGC 57.022 29.630 0.00 0.00 37.67 4.40
97 98 9.504708 AATGAAAAACTCAAAAATGATATGGCA 57.495 25.926 0.00 0.00 37.67 4.92
98 99 8.899427 TGAAAAACTCAAAAATGATATGGCAA 57.101 26.923 0.00 0.00 0.00 4.52
99 100 8.991026 TGAAAAACTCAAAAATGATATGGCAAG 58.009 29.630 0.00 0.00 0.00 4.01
100 101 9.206870 GAAAAACTCAAAAATGATATGGCAAGA 57.793 29.630 0.00 0.00 0.00 3.02
101 102 9.558396 AAAAACTCAAAAATGATATGGCAAGAA 57.442 25.926 0.00 0.00 0.00 2.52
102 103 9.558396 AAAACTCAAAAATGATATGGCAAGAAA 57.442 25.926 0.00 0.00 0.00 2.52
103 104 9.558396 AAACTCAAAAATGATATGGCAAGAAAA 57.442 25.926 0.00 0.00 0.00 2.29
104 105 9.558396 AACTCAAAAATGATATGGCAAGAAAAA 57.442 25.926 0.00 0.00 0.00 1.94
130 131 5.986004 AATCATTGGTAGCGTACTAAAGC 57.014 39.130 0.00 0.00 32.81 3.51
131 132 4.730949 TCATTGGTAGCGTACTAAAGCT 57.269 40.909 0.00 0.00 46.53 3.74
132 133 5.840243 TCATTGGTAGCGTACTAAAGCTA 57.160 39.130 0.00 0.00 44.15 3.32
133 134 5.828747 TCATTGGTAGCGTACTAAAGCTAG 58.171 41.667 1.01 0.00 45.32 3.42
136 137 3.599046 GTAGCGTACTAAAGCTAGCGA 57.401 47.619 9.55 0.00 45.32 4.93
137 138 4.144534 GTAGCGTACTAAAGCTAGCGAT 57.855 45.455 9.55 4.73 45.32 4.58
138 139 5.274881 GTAGCGTACTAAAGCTAGCGATA 57.725 43.478 9.55 5.73 45.32 2.92
139 140 4.825546 AGCGTACTAAAGCTAGCGATAA 57.174 40.909 9.55 0.00 42.60 1.75
140 141 5.179045 AGCGTACTAAAGCTAGCGATAAA 57.821 39.130 9.55 0.00 42.60 1.40
141 142 5.585390 AGCGTACTAAAGCTAGCGATAAAA 58.415 37.500 9.55 0.00 42.60 1.52
142 143 5.686397 AGCGTACTAAAGCTAGCGATAAAAG 59.314 40.000 9.55 5.17 42.60 2.27
143 144 5.458126 GCGTACTAAAGCTAGCGATAAAAGT 59.542 40.000 9.55 10.57 0.00 2.66
144 145 6.634436 GCGTACTAAAGCTAGCGATAAAAGTA 59.366 38.462 9.55 9.65 0.00 2.24
145 146 7.325579 GCGTACTAAAGCTAGCGATAAAAGTAT 59.674 37.037 9.55 0.00 0.00 2.12
146 147 8.628279 CGTACTAAAGCTAGCGATAAAAGTATG 58.372 37.037 9.55 12.93 0.00 2.39
147 148 7.409465 ACTAAAGCTAGCGATAAAAGTATGC 57.591 36.000 9.55 0.00 0.00 3.14
148 149 7.210873 ACTAAAGCTAGCGATAAAAGTATGCT 58.789 34.615 9.55 0.00 39.59 3.79
149 150 8.358148 ACTAAAGCTAGCGATAAAAGTATGCTA 58.642 33.333 9.55 0.00 37.12 3.49
150 151 9.360093 CTAAAGCTAGCGATAAAAGTATGCTAT 57.640 33.333 9.55 0.00 37.50 2.97
151 152 7.820044 AAGCTAGCGATAAAAGTATGCTATC 57.180 36.000 9.55 0.00 37.50 2.08
152 153 6.925211 AGCTAGCGATAAAAGTATGCTATCA 58.075 36.000 9.55 0.00 37.50 2.15
153 154 7.551585 AGCTAGCGATAAAAGTATGCTATCAT 58.448 34.615 9.55 0.00 37.50 2.45
154 155 7.704472 AGCTAGCGATAAAAGTATGCTATCATC 59.296 37.037 9.55 0.00 37.50 2.92
155 156 7.489435 GCTAGCGATAAAAGTATGCTATCATCA 59.511 37.037 0.00 0.00 37.50 3.07
156 157 7.588143 AGCGATAAAAGTATGCTATCATCAC 57.412 36.000 0.00 0.00 33.37 3.06
157 158 7.154656 AGCGATAAAAGTATGCTATCATCACA 58.845 34.615 0.00 0.00 33.37 3.58
158 159 7.116948 AGCGATAAAAGTATGCTATCATCACAC 59.883 37.037 0.00 0.00 33.37 3.82
159 160 7.440281 CGATAAAAGTATGCTATCATCACACG 58.560 38.462 0.00 0.00 34.22 4.49
160 161 5.409643 AAAAGTATGCTATCATCACACGC 57.590 39.130 0.00 0.00 34.22 5.34
161 162 3.733443 AGTATGCTATCATCACACGCA 57.267 42.857 0.00 0.00 34.22 5.24
162 163 4.058721 AGTATGCTATCATCACACGCAA 57.941 40.909 0.00 0.00 33.94 4.85
163 164 4.441792 AGTATGCTATCATCACACGCAAA 58.558 39.130 0.00 0.00 33.94 3.68
164 165 4.875536 AGTATGCTATCATCACACGCAAAA 59.124 37.500 0.00 0.00 33.94 2.44
165 166 3.745332 TGCTATCATCACACGCAAAAG 57.255 42.857 0.00 0.00 0.00 2.27
166 167 2.159531 TGCTATCATCACACGCAAAAGC 60.160 45.455 0.00 0.00 0.00 3.51
167 168 2.096496 GCTATCATCACACGCAAAAGCT 59.904 45.455 0.00 0.00 0.00 3.74
168 169 3.309682 GCTATCATCACACGCAAAAGCTA 59.690 43.478 0.00 0.00 0.00 3.32
169 170 4.201812 GCTATCATCACACGCAAAAGCTAA 60.202 41.667 0.00 0.00 0.00 3.09
170 171 3.536158 TCATCACACGCAAAAGCTAAC 57.464 42.857 0.00 0.00 0.00 2.34
171 172 2.875317 TCATCACACGCAAAAGCTAACA 59.125 40.909 0.00 0.00 0.00 2.41
172 173 3.313803 TCATCACACGCAAAAGCTAACAA 59.686 39.130 0.00 0.00 0.00 2.83
173 174 3.766676 TCACACGCAAAAGCTAACAAA 57.233 38.095 0.00 0.00 0.00 2.83
174 175 4.300189 TCACACGCAAAAGCTAACAAAT 57.700 36.364 0.00 0.00 0.00 2.32
175 176 4.286910 TCACACGCAAAAGCTAACAAATC 58.713 39.130 0.00 0.00 0.00 2.17
176 177 3.117832 CACACGCAAAAGCTAACAAATCG 59.882 43.478 0.00 0.00 0.00 3.34
177 178 3.002862 ACACGCAAAAGCTAACAAATCGA 59.997 39.130 0.00 0.00 0.00 3.59
178 179 4.158384 CACGCAAAAGCTAACAAATCGAT 58.842 39.130 0.00 0.00 0.00 3.59
179 180 4.260656 CACGCAAAAGCTAACAAATCGATC 59.739 41.667 0.00 0.00 0.00 3.69
180 181 4.154195 ACGCAAAAGCTAACAAATCGATCT 59.846 37.500 0.00 0.00 0.00 2.75
181 182 4.493350 CGCAAAAGCTAACAAATCGATCTG 59.507 41.667 0.00 0.00 0.00 2.90
182 183 4.795278 GCAAAAGCTAACAAATCGATCTGG 59.205 41.667 3.36 0.00 0.00 3.86
183 184 4.622701 AAAGCTAACAAATCGATCTGGC 57.377 40.909 3.36 0.00 0.00 4.85
184 185 3.266510 AGCTAACAAATCGATCTGGCA 57.733 42.857 3.36 0.00 0.00 4.92
185 186 3.609853 AGCTAACAAATCGATCTGGCAA 58.390 40.909 3.36 0.00 0.00 4.52
186 187 4.009675 AGCTAACAAATCGATCTGGCAAA 58.990 39.130 3.36 0.00 0.00 3.68
187 188 4.458989 AGCTAACAAATCGATCTGGCAAAA 59.541 37.500 3.36 0.00 0.00 2.44
188 189 5.048083 AGCTAACAAATCGATCTGGCAAAAA 60.048 36.000 3.36 0.00 0.00 1.94
216 217 8.888579 AATAATTCGCTGTTAGCACTAATACT 57.111 30.769 1.45 0.00 42.58 2.12
217 218 8.888579 ATAATTCGCTGTTAGCACTAATACTT 57.111 30.769 1.45 0.00 42.58 2.24
218 219 6.589830 ATTCGCTGTTAGCACTAATACTTG 57.410 37.500 1.45 0.00 42.58 3.16
219 220 4.430007 TCGCTGTTAGCACTAATACTTGG 58.570 43.478 1.45 0.00 42.58 3.61
220 221 4.158949 TCGCTGTTAGCACTAATACTTGGA 59.841 41.667 1.45 0.00 42.58 3.53
221 222 4.504461 CGCTGTTAGCACTAATACTTGGAG 59.496 45.833 1.45 0.00 42.58 3.86
222 223 4.271291 GCTGTTAGCACTAATACTTGGAGC 59.729 45.833 0.00 0.00 41.89 4.70
223 224 5.665459 CTGTTAGCACTAATACTTGGAGCT 58.335 41.667 0.00 0.00 40.69 4.09
224 225 6.683110 GCTGTTAGCACTAATACTTGGAGCTA 60.683 42.308 0.00 0.00 41.89 3.32
225 226 6.806751 TGTTAGCACTAATACTTGGAGCTAG 58.193 40.000 0.00 0.00 40.22 3.42
226 227 4.329462 AGCACTAATACTTGGAGCTAGC 57.671 45.455 6.62 6.62 36.42 3.42
227 228 3.053455 GCACTAATACTTGGAGCTAGCG 58.947 50.000 9.55 0.00 0.00 4.26
228 229 3.243434 GCACTAATACTTGGAGCTAGCGA 60.243 47.826 9.55 0.00 0.00 4.93
229 230 4.559704 GCACTAATACTTGGAGCTAGCGAT 60.560 45.833 9.55 0.00 0.00 4.58
230 231 5.157781 CACTAATACTTGGAGCTAGCGATC 58.842 45.833 9.55 1.82 0.00 3.69
231 232 4.827835 ACTAATACTTGGAGCTAGCGATCA 59.172 41.667 9.55 6.34 0.00 2.92
232 233 3.932545 ATACTTGGAGCTAGCGATCAG 57.067 47.619 9.55 7.24 0.00 2.90
233 234 1.769026 ACTTGGAGCTAGCGATCAGA 58.231 50.000 9.55 0.00 0.00 3.27
234 235 2.315176 ACTTGGAGCTAGCGATCAGAT 58.685 47.619 9.55 0.00 0.00 2.90
235 236 2.697751 ACTTGGAGCTAGCGATCAGATT 59.302 45.455 9.55 0.00 0.00 2.40
236 237 3.133721 ACTTGGAGCTAGCGATCAGATTT 59.866 43.478 9.55 0.00 0.00 2.17
237 238 3.827008 TGGAGCTAGCGATCAGATTTT 57.173 42.857 9.55 0.00 0.00 1.82
238 239 4.142609 TGGAGCTAGCGATCAGATTTTT 57.857 40.909 9.55 0.00 0.00 1.94
239 240 4.122776 TGGAGCTAGCGATCAGATTTTTC 58.877 43.478 9.55 0.00 0.00 2.29
240 241 4.141846 TGGAGCTAGCGATCAGATTTTTCT 60.142 41.667 9.55 0.00 0.00 2.52
241 242 4.813697 GGAGCTAGCGATCAGATTTTTCTT 59.186 41.667 9.55 0.00 0.00 2.52
242 243 5.050431 GGAGCTAGCGATCAGATTTTTCTTC 60.050 44.000 9.55 0.00 0.00 2.87
243 244 4.813697 AGCTAGCGATCAGATTTTTCTTCC 59.186 41.667 9.55 0.00 0.00 3.46
244 245 4.572389 GCTAGCGATCAGATTTTTCTTCCA 59.428 41.667 0.00 0.00 0.00 3.53
245 246 5.277250 GCTAGCGATCAGATTTTTCTTCCAG 60.277 44.000 0.00 0.00 0.00 3.86
246 247 3.944015 AGCGATCAGATTTTTCTTCCAGG 59.056 43.478 0.00 0.00 0.00 4.45
247 248 3.941483 GCGATCAGATTTTTCTTCCAGGA 59.059 43.478 0.00 0.00 0.00 3.86
248 249 4.396166 GCGATCAGATTTTTCTTCCAGGAA 59.604 41.667 0.71 0.71 0.00 3.36
249 250 5.106157 GCGATCAGATTTTTCTTCCAGGAAA 60.106 40.000 2.72 0.00 33.98 3.13
250 251 6.570378 GCGATCAGATTTTTCTTCCAGGAAAA 60.570 38.462 2.72 0.00 41.54 2.29
251 252 7.025963 CGATCAGATTTTTCTTCCAGGAAAAG 58.974 38.462 2.72 0.00 43.22 2.27
252 253 6.089249 TCAGATTTTTCTTCCAGGAAAAGC 57.911 37.500 2.72 0.00 43.22 3.51
253 254 5.835280 TCAGATTTTTCTTCCAGGAAAAGCT 59.165 36.000 2.72 2.74 43.22 3.74
254 255 7.004086 TCAGATTTTTCTTCCAGGAAAAGCTA 58.996 34.615 7.54 0.00 43.22 3.32
255 256 7.175641 TCAGATTTTTCTTCCAGGAAAAGCTAG 59.824 37.037 7.54 4.13 43.22 3.42
256 257 6.435591 AGATTTTTCTTCCAGGAAAAGCTAGG 59.564 38.462 6.29 0.00 43.22 3.02
257 258 3.721087 TTCTTCCAGGAAAAGCTAGGG 57.279 47.619 2.72 0.00 0.00 3.53
258 259 2.915869 TCTTCCAGGAAAAGCTAGGGA 58.084 47.619 2.72 0.00 0.00 4.20
259 260 3.464828 TCTTCCAGGAAAAGCTAGGGAT 58.535 45.455 2.72 0.00 0.00 3.85
260 261 3.456277 TCTTCCAGGAAAAGCTAGGGATC 59.544 47.826 2.72 0.00 0.00 3.36
261 262 2.845659 TCCAGGAAAAGCTAGGGATCA 58.154 47.619 0.00 0.00 0.00 2.92
262 263 2.774234 TCCAGGAAAAGCTAGGGATCAG 59.226 50.000 0.00 0.00 0.00 2.90
263 264 2.774234 CCAGGAAAAGCTAGGGATCAGA 59.226 50.000 0.00 0.00 0.00 3.27
264 265 3.393941 CCAGGAAAAGCTAGGGATCAGAT 59.606 47.826 0.00 0.00 0.00 2.90
265 266 4.141298 CCAGGAAAAGCTAGGGATCAGATT 60.141 45.833 0.00 0.00 0.00 2.40
266 267 5.444176 CAGGAAAAGCTAGGGATCAGATTT 58.556 41.667 0.00 0.00 33.26 2.17
267 268 5.890419 CAGGAAAAGCTAGGGATCAGATTTT 59.110 40.000 7.10 7.10 42.53 1.82
268 269 6.379417 CAGGAAAAGCTAGGGATCAGATTTTT 59.621 38.462 8.40 2.91 40.59 1.94
289 290 1.497161 TTTCTGGAGGGGTAGCTAGC 58.503 55.000 14.67 14.67 0.00 3.42
290 291 0.755698 TTCTGGAGGGGTAGCTAGCG 60.756 60.000 16.33 2.16 0.00 4.26
291 292 1.152735 CTGGAGGGGTAGCTAGCGA 60.153 63.158 16.33 0.00 0.00 4.93
292 293 0.540830 CTGGAGGGGTAGCTAGCGAT 60.541 60.000 16.33 7.49 0.00 4.58
293 294 0.539901 TGGAGGGGTAGCTAGCGATC 60.540 60.000 16.33 15.23 0.00 3.69
294 295 0.539901 GGAGGGGTAGCTAGCGATCA 60.540 60.000 20.79 0.00 0.00 2.92
295 296 0.885196 GAGGGGTAGCTAGCGATCAG 59.115 60.000 16.33 0.00 0.00 2.90
296 297 0.478942 AGGGGTAGCTAGCGATCAGA 59.521 55.000 16.33 0.00 0.00 3.27
297 298 1.076350 AGGGGTAGCTAGCGATCAGAT 59.924 52.381 16.33 0.00 0.00 2.90
298 299 2.309162 AGGGGTAGCTAGCGATCAGATA 59.691 50.000 16.33 0.00 0.00 1.98
299 300 3.053245 AGGGGTAGCTAGCGATCAGATAT 60.053 47.826 16.33 0.00 0.00 1.63
300 301 4.166337 AGGGGTAGCTAGCGATCAGATATA 59.834 45.833 16.33 0.00 0.00 0.86
301 302 4.276431 GGGGTAGCTAGCGATCAGATATAC 59.724 50.000 16.33 3.72 0.00 1.47
302 303 4.882427 GGGTAGCTAGCGATCAGATATACA 59.118 45.833 16.33 0.00 0.00 2.29
303 304 5.533154 GGGTAGCTAGCGATCAGATATACAT 59.467 44.000 16.33 0.00 0.00 2.29
304 305 6.711194 GGGTAGCTAGCGATCAGATATACATA 59.289 42.308 16.33 0.00 0.00 2.29
305 306 7.392113 GGGTAGCTAGCGATCAGATATACATAT 59.608 40.741 16.33 0.00 0.00 1.78
306 307 9.438228 GGTAGCTAGCGATCAGATATACATATA 57.562 37.037 9.55 0.00 0.00 0.86
308 309 8.560355 AGCTAGCGATCAGATATACATATAGG 57.440 38.462 9.55 0.00 0.00 2.57
309 310 7.120579 AGCTAGCGATCAGATATACATATAGGC 59.879 40.741 9.55 0.00 0.00 3.93
310 311 6.247727 AGCGATCAGATATACATATAGGCG 57.752 41.667 0.00 0.00 0.00 5.52
311 312 5.182190 AGCGATCAGATATACATATAGGCGG 59.818 44.000 0.00 0.00 0.00 6.13
312 313 5.620205 GCGATCAGATATACATATAGGCGGG 60.620 48.000 0.00 0.00 0.00 6.13
313 314 5.620205 CGATCAGATATACATATAGGCGGGC 60.620 48.000 0.00 0.00 0.00 6.13
314 315 3.895656 TCAGATATACATATAGGCGGGCC 59.104 47.826 0.18 0.18 0.00 5.80
315 316 3.641436 CAGATATACATATAGGCGGGCCA 59.359 47.826 12.97 0.00 38.92 5.36
316 317 3.641906 AGATATACATATAGGCGGGCCAC 59.358 47.826 12.97 0.00 38.92 5.01
317 318 0.909623 ATACATATAGGCGGGCCACC 59.090 55.000 12.97 1.13 38.92 4.61
318 319 1.196104 TACATATAGGCGGGCCACCC 61.196 60.000 12.97 4.32 41.09 4.61
319 320 2.122144 ATATAGGCGGGCCACCCA 60.122 61.111 12.97 0.00 45.83 4.51
320 321 2.224159 ATATAGGCGGGCCACCCAG 61.224 63.158 12.97 0.00 45.83 4.45
347 348 2.983592 CGGGGCGAGCTGGTTTTT 60.984 61.111 0.00 0.00 0.00 1.94
376 377 7.889873 TTTTGGGAATCAAACAAACTAGAGA 57.110 32.000 0.00 0.00 44.20 3.10
377 378 7.889873 TTTGGGAATCAAACAAACTAGAGAA 57.110 32.000 0.00 0.00 40.14 2.87
378 379 7.889873 TTGGGAATCAAACAAACTAGAGAAA 57.110 32.000 0.00 0.00 31.46 2.52
379 380 8.477419 TTGGGAATCAAACAAACTAGAGAAAT 57.523 30.769 0.00 0.00 31.46 2.17
380 381 8.477419 TGGGAATCAAACAAACTAGAGAAATT 57.523 30.769 0.00 0.00 0.00 1.82
381 382 8.923270 TGGGAATCAAACAAACTAGAGAAATTT 58.077 29.630 0.00 0.00 0.00 1.82
382 383 9.196552 GGGAATCAAACAAACTAGAGAAATTTG 57.803 33.333 0.00 0.00 38.89 2.32
383 384 9.965824 GGAATCAAACAAACTAGAGAAATTTGA 57.034 29.630 9.13 11.13 38.52 2.69
386 387 9.918630 ATCAAACAAACTAGAGAAATTTGATGG 57.081 29.630 17.63 4.51 41.40 3.51
387 388 8.912988 TCAAACAAACTAGAGAAATTTGATGGT 58.087 29.630 9.13 0.00 36.91 3.55
388 389 8.971321 CAAACAAACTAGAGAAATTTGATGGTG 58.029 33.333 9.13 0.37 36.91 4.17
389 390 8.463930 AACAAACTAGAGAAATTTGATGGTGA 57.536 30.769 9.13 0.00 36.91 4.02
390 391 8.463930 ACAAACTAGAGAAATTTGATGGTGAA 57.536 30.769 9.13 0.00 36.91 3.18
391 392 9.082313 ACAAACTAGAGAAATTTGATGGTGAAT 57.918 29.630 9.13 0.00 36.91 2.57
392 393 9.350357 CAAACTAGAGAAATTTGATGGTGAATG 57.650 33.333 0.00 0.00 35.73 2.67
393 394 8.868522 AACTAGAGAAATTTGATGGTGAATGA 57.131 30.769 0.00 0.00 0.00 2.57
394 395 8.868522 ACTAGAGAAATTTGATGGTGAATGAA 57.131 30.769 0.00 0.00 0.00 2.57
395 396 9.300681 ACTAGAGAAATTTGATGGTGAATGAAA 57.699 29.630 0.00 0.00 0.00 2.69
396 397 9.565213 CTAGAGAAATTTGATGGTGAATGAAAC 57.435 33.333 0.00 0.00 0.00 2.78
397 398 7.954835 AGAGAAATTTGATGGTGAATGAAACA 58.045 30.769 0.00 0.00 0.00 2.83
398 399 8.423349 AGAGAAATTTGATGGTGAATGAAACAA 58.577 29.630 0.00 0.00 0.00 2.83
399 400 8.961294 AGAAATTTGATGGTGAATGAAACAAA 57.039 26.923 0.00 0.00 0.00 2.83
400 401 8.829612 AGAAATTTGATGGTGAATGAAACAAAC 58.170 29.630 0.00 0.00 0.00 2.93
401 402 8.735692 AAATTTGATGGTGAATGAAACAAACT 57.264 26.923 0.00 0.00 0.00 2.66
402 403 9.829507 AAATTTGATGGTGAATGAAACAAACTA 57.170 25.926 0.00 0.00 0.00 2.24
403 404 9.480053 AATTTGATGGTGAATGAAACAAACTAG 57.520 29.630 0.00 0.00 0.00 2.57
404 405 7.815840 TTGATGGTGAATGAAACAAACTAGA 57.184 32.000 0.00 0.00 0.00 2.43
405 406 7.202016 TGATGGTGAATGAAACAAACTAGAC 57.798 36.000 0.00 0.00 0.00 2.59
406 407 6.770303 TGATGGTGAATGAAACAAACTAGACA 59.230 34.615 0.00 0.00 0.00 3.41
407 408 7.284261 TGATGGTGAATGAAACAAACTAGACAA 59.716 33.333 0.00 0.00 0.00 3.18
408 409 7.397892 TGGTGAATGAAACAAACTAGACAAA 57.602 32.000 0.00 0.00 0.00 2.83
409 410 8.006298 TGGTGAATGAAACAAACTAGACAAAT 57.994 30.769 0.00 0.00 0.00 2.32
410 411 9.126151 TGGTGAATGAAACAAACTAGACAAATA 57.874 29.630 0.00 0.00 0.00 1.40
411 412 9.959749 GGTGAATGAAACAAACTAGACAAATAA 57.040 29.630 0.00 0.00 0.00 1.40
428 429 9.471702 AGACAAATAATGAGAAAATGAGATGGT 57.528 29.630 0.00 0.00 0.00 3.55
429 430 9.512435 GACAAATAATGAGAAAATGAGATGGTG 57.488 33.333 0.00 0.00 0.00 4.17
430 431 7.977853 ACAAATAATGAGAAAATGAGATGGTGC 59.022 33.333 0.00 0.00 0.00 5.01
431 432 7.893124 AATAATGAGAAAATGAGATGGTGCT 57.107 32.000 0.00 0.00 0.00 4.40
432 433 8.985315 AATAATGAGAAAATGAGATGGTGCTA 57.015 30.769 0.00 0.00 0.00 3.49
433 434 8.985315 ATAATGAGAAAATGAGATGGTGCTAA 57.015 30.769 0.00 0.00 0.00 3.09
434 435 7.893124 AATGAGAAAATGAGATGGTGCTAAT 57.107 32.000 0.00 0.00 0.00 1.73
435 436 8.985315 AATGAGAAAATGAGATGGTGCTAATA 57.015 30.769 0.00 0.00 0.00 0.98
436 437 9.584008 AATGAGAAAATGAGATGGTGCTAATAT 57.416 29.630 0.00 0.00 0.00 1.28
477 478 5.550232 TGTTATGTCACATGTTGATGAGC 57.450 39.130 0.00 0.00 36.32 4.26
483 484 1.596260 CACATGTTGATGAGCGCTAGG 59.404 52.381 11.50 0.00 33.36 3.02
494 495 1.135333 GAGCGCTAGGCATACCCTATC 59.865 57.143 11.50 0.00 45.11 2.08
496 497 1.550976 GCGCTAGGCATACCCTATCTT 59.449 52.381 0.00 0.00 45.11 2.40
531 536 6.259829 ACCAACCTGCATCAAAATTTGTAAAC 59.740 34.615 5.56 0.00 0.00 2.01
537 542 8.610896 CCTGCATCAAAATTTGTAAACTTTTCA 58.389 29.630 5.56 0.00 0.00 2.69
541 546 9.437045 CATCAAAATTTGTAAACTTTTCAAGGC 57.563 29.630 5.56 0.00 0.00 4.35
542 547 7.680062 TCAAAATTTGTAAACTTTTCAAGGCG 58.320 30.769 5.56 0.00 0.00 5.52
544 549 4.722361 TTTGTAAACTTTTCAAGGCGGT 57.278 36.364 0.00 0.00 0.00 5.68
546 551 4.816786 TGTAAACTTTTCAAGGCGGTAC 57.183 40.909 0.00 0.00 0.00 3.34
547 552 3.565063 TGTAAACTTTTCAAGGCGGTACC 59.435 43.478 0.16 0.16 39.61 3.34
548 553 1.232119 AACTTTTCAAGGCGGTACCG 58.768 50.000 30.06 30.06 46.52 4.02
549 554 0.393820 ACTTTTCAAGGCGGTACCGA 59.606 50.000 37.62 13.94 46.52 4.69
550 555 1.202675 ACTTTTCAAGGCGGTACCGAA 60.203 47.619 37.62 19.39 46.52 4.30
551 556 1.463444 CTTTTCAAGGCGGTACCGAAG 59.537 52.381 37.62 24.01 46.52 3.79
552 557 0.952010 TTTCAAGGCGGTACCGAAGC 60.952 55.000 37.62 19.69 46.52 3.86
685 690 1.810151 GATACTGCCTCCTAGAGAGCG 59.190 57.143 0.00 0.00 41.74 5.03
818 844 1.098712 GGTCCAACACTTGTCGCCAA 61.099 55.000 0.00 0.00 0.00 4.52
917 967 5.571285 TGGCAAACAACCAGTATATAACCA 58.429 37.500 0.00 0.00 32.06 3.67
940 990 1.019278 GCATTCTCGCCTTTCGTCCA 61.019 55.000 0.00 0.00 39.67 4.02
959 1009 0.900647 ACACTCCCGACAGGAAGAGG 60.901 60.000 0.00 0.00 46.94 3.69
986 1036 3.370840 TGCACCAGGAATCAATTAGCT 57.629 42.857 0.00 0.00 0.00 3.32
1266 1316 1.671054 CAACGGTGTCAAGGCGGAT 60.671 57.895 0.00 0.00 0.00 4.18
1461 1511 1.943968 GCCAGTGATGCCAAGACGTTA 60.944 52.381 0.00 0.00 0.00 3.18
1671 1772 2.626780 CGAGTCGTCCCAGAGTGCA 61.627 63.158 3.82 0.00 0.00 4.57
1858 1989 2.448542 GCCCCTCCTATGGCTCCA 60.449 66.667 0.00 0.00 44.46 3.86
1859 1990 2.524204 GCCCCTCCTATGGCTCCAG 61.524 68.421 0.00 0.00 44.46 3.86
1860 1991 2.524204 CCCCTCCTATGGCTCCAGC 61.524 68.421 0.00 0.00 41.14 4.85
1861 1992 1.461075 CCCTCCTATGGCTCCAGCT 60.461 63.158 0.00 0.00 41.70 4.24
1862 1993 1.479368 CCCTCCTATGGCTCCAGCTC 61.479 65.000 0.00 0.00 41.70 4.09
1863 1994 1.479368 CCTCCTATGGCTCCAGCTCC 61.479 65.000 0.00 0.00 41.70 4.70
1924 2061 3.945434 CGCCATCCAGTGATGCGC 61.945 66.667 0.00 0.00 45.86 6.09
1997 2137 3.141488 CTCCTACGGCTCCAGCGT 61.141 66.667 0.00 0.00 43.26 5.07
2485 2640 0.509929 GTGTAACGGGTCGACTTTGC 59.490 55.000 16.46 10.29 0.00 3.68
2487 2642 0.788391 GTAACGGGTCGACTTTGCTG 59.212 55.000 16.46 6.17 0.00 4.41
2488 2643 0.390124 TAACGGGTCGACTTTGCTGT 59.610 50.000 16.46 6.85 0.00 4.40
2489 2644 0.390124 AACGGGTCGACTTTGCTGTA 59.610 50.000 16.46 0.00 0.00 2.74
2576 2741 3.366052 ACTGTTCCACCTCACTGTTTT 57.634 42.857 0.00 0.00 0.00 2.43
2591 2758 6.353323 TCACTGTTTTGTTGGAGTCTGAATA 58.647 36.000 0.00 0.00 0.00 1.75
2610 2777 9.734620 TCTGAATACAAGAAATTTGTTTGAGTG 57.265 29.630 15.34 1.81 34.11 3.51
2665 2832 8.482943 ACGCAGATAGTATATGGCCAAAATATA 58.517 33.333 10.96 4.81 0.00 0.86
2713 2881 4.384056 AGCACACAGATCAAGCATATACC 58.616 43.478 0.00 0.00 0.00 2.73
2749 2917 2.622064 AGTCCACCGGATAATTCAGC 57.378 50.000 9.46 0.00 32.73 4.26
2824 2992 5.581126 TGATCATTTCCCAAGTGCATAAC 57.419 39.130 0.00 0.00 0.00 1.89
2838 3006 1.065126 GCATAACCTCTGCTTGGGACT 60.065 52.381 0.00 0.00 36.68 3.85
2844 3012 4.020617 CTGCTTGGGACTCCGGCA 62.021 66.667 0.00 8.19 40.29 5.69
2872 3040 0.635009 TAGGGAGAAGGATGACGGGT 59.365 55.000 0.00 0.00 0.00 5.28
2946 3115 2.435938 CACGCGGGCATAGGTTGT 60.436 61.111 12.47 0.00 0.00 3.32
2991 3160 0.609131 GGTGAGCAAAGCTAAGGGCA 60.609 55.000 0.00 0.00 44.79 5.36
3012 3182 5.091431 GCACTCAGCAAACTATGAAATCAC 58.909 41.667 0.00 0.00 44.79 3.06
3084 3254 0.676466 CACTTTGGCGGGCATCACTA 60.676 55.000 4.64 0.00 0.00 2.74
3194 4032 0.984230 TGGATGGTTTCTCTTCCGCT 59.016 50.000 0.00 0.00 34.72 5.52
3227 4073 0.682532 TTGGTTGCACTTGAGCCACA 60.683 50.000 0.00 0.00 32.26 4.17
3261 4107 3.449227 CTGGCGCTCCGGTGTCTA 61.449 66.667 7.64 0.00 33.91 2.59
3266 4112 2.409651 GCTCCGGTGTCTAGCTCG 59.590 66.667 0.00 0.00 33.40 5.03
3294 4140 2.486203 GTCCCGTGATGTTGCATTTGTA 59.514 45.455 0.00 0.00 0.00 2.41
3295 4141 3.128589 GTCCCGTGATGTTGCATTTGTAT 59.871 43.478 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.977762 GCCATATCATTTTTGAGTTTTTCATTC 57.022 29.630 0.00 0.00 35.27 2.67
71 72 9.504708 TGCCATATCATTTTTGAGTTTTTCATT 57.495 25.926 0.00 0.00 35.27 2.57
72 73 9.504708 TTGCCATATCATTTTTGAGTTTTTCAT 57.495 25.926 0.00 0.00 35.27 2.57
73 74 8.899427 TTGCCATATCATTTTTGAGTTTTTCA 57.101 26.923 0.00 0.00 0.00 2.69
74 75 9.206870 TCTTGCCATATCATTTTTGAGTTTTTC 57.793 29.630 0.00 0.00 0.00 2.29
75 76 9.558396 TTCTTGCCATATCATTTTTGAGTTTTT 57.442 25.926 0.00 0.00 0.00 1.94
76 77 9.558396 TTTCTTGCCATATCATTTTTGAGTTTT 57.442 25.926 0.00 0.00 0.00 2.43
77 78 9.558396 TTTTCTTGCCATATCATTTTTGAGTTT 57.442 25.926 0.00 0.00 0.00 2.66
78 79 9.558396 TTTTTCTTGCCATATCATTTTTGAGTT 57.442 25.926 0.00 0.00 0.00 3.01
105 106 7.120726 AGCTTTAGTACGCTACCAATGATTTTT 59.879 33.333 0.00 0.00 34.11 1.94
106 107 6.598064 AGCTTTAGTACGCTACCAATGATTTT 59.402 34.615 0.00 0.00 34.11 1.82
107 108 6.113411 AGCTTTAGTACGCTACCAATGATTT 58.887 36.000 0.00 0.00 34.11 2.17
108 109 5.671493 AGCTTTAGTACGCTACCAATGATT 58.329 37.500 0.00 0.00 34.11 2.57
109 110 5.277857 AGCTTTAGTACGCTACCAATGAT 57.722 39.130 0.00 0.00 34.11 2.45
110 111 4.730949 AGCTTTAGTACGCTACCAATGA 57.269 40.909 0.00 0.00 34.11 2.57
111 112 4.444720 GCTAGCTTTAGTACGCTACCAATG 59.555 45.833 7.70 0.00 37.68 2.82
112 113 4.618965 GCTAGCTTTAGTACGCTACCAAT 58.381 43.478 7.70 0.00 37.68 3.16
113 114 3.488047 CGCTAGCTTTAGTACGCTACCAA 60.488 47.826 13.93 0.00 37.68 3.67
114 115 2.032550 CGCTAGCTTTAGTACGCTACCA 59.967 50.000 13.93 0.00 37.68 3.25
115 116 2.289002 TCGCTAGCTTTAGTACGCTACC 59.711 50.000 13.93 0.00 37.68 3.18
116 117 3.599046 TCGCTAGCTTTAGTACGCTAC 57.401 47.619 13.93 0.00 37.68 3.58
117 118 5.929697 TTATCGCTAGCTTTAGTACGCTA 57.070 39.130 13.93 1.09 37.68 4.26
118 119 4.825546 TTATCGCTAGCTTTAGTACGCT 57.174 40.909 13.93 0.00 40.15 5.07
119 120 5.458126 ACTTTTATCGCTAGCTTTAGTACGC 59.542 40.000 13.93 0.00 0.00 4.42
120 121 8.628279 CATACTTTTATCGCTAGCTTTAGTACG 58.372 37.037 13.93 1.37 0.00 3.67
121 122 8.426251 GCATACTTTTATCGCTAGCTTTAGTAC 58.574 37.037 13.93 0.00 0.00 2.73
122 123 8.358148 AGCATACTTTTATCGCTAGCTTTAGTA 58.642 33.333 13.93 11.24 0.00 1.82
123 124 7.210873 AGCATACTTTTATCGCTAGCTTTAGT 58.789 34.615 13.93 9.53 0.00 2.24
124 125 7.644986 AGCATACTTTTATCGCTAGCTTTAG 57.355 36.000 13.93 4.15 0.00 1.85
125 126 9.355215 GATAGCATACTTTTATCGCTAGCTTTA 57.645 33.333 13.93 1.10 38.28 1.85
126 127 7.872993 TGATAGCATACTTTTATCGCTAGCTTT 59.127 33.333 13.93 2.16 41.06 3.51
127 128 7.378966 TGATAGCATACTTTTATCGCTAGCTT 58.621 34.615 13.93 2.55 41.06 3.74
128 129 6.925211 TGATAGCATACTTTTATCGCTAGCT 58.075 36.000 13.93 0.00 41.06 3.32
129 130 7.489435 TGATGATAGCATACTTTTATCGCTAGC 59.511 37.037 4.06 4.06 40.91 3.42
130 131 8.802856 GTGATGATAGCATACTTTTATCGCTAG 58.197 37.037 0.00 0.00 38.48 3.42
131 132 8.303876 TGTGATGATAGCATACTTTTATCGCTA 58.696 33.333 0.00 0.00 39.35 4.26
132 133 7.116948 GTGTGATGATAGCATACTTTTATCGCT 59.883 37.037 0.00 0.00 34.02 4.93
133 134 7.230222 GTGTGATGATAGCATACTTTTATCGC 58.770 38.462 0.00 0.00 33.71 4.58
134 135 7.440281 CGTGTGATGATAGCATACTTTTATCG 58.560 38.462 0.00 0.00 34.11 2.92
135 136 7.095649 TGCGTGTGATGATAGCATACTTTTATC 60.096 37.037 0.00 0.00 34.11 1.75
136 137 6.705825 TGCGTGTGATGATAGCATACTTTTAT 59.294 34.615 0.00 0.00 34.11 1.40
137 138 6.045955 TGCGTGTGATGATAGCATACTTTTA 58.954 36.000 0.00 0.00 34.11 1.52
138 139 4.875536 TGCGTGTGATGATAGCATACTTTT 59.124 37.500 0.00 0.00 34.11 2.27
139 140 4.441792 TGCGTGTGATGATAGCATACTTT 58.558 39.130 0.00 0.00 34.11 2.66
140 141 4.058721 TGCGTGTGATGATAGCATACTT 57.941 40.909 0.00 0.00 34.11 2.24
141 142 3.733443 TGCGTGTGATGATAGCATACT 57.267 42.857 0.00 0.00 34.11 2.12
142 143 4.794248 TTTGCGTGTGATGATAGCATAC 57.206 40.909 0.00 0.00 37.68 2.39
143 144 4.260743 GCTTTTGCGTGTGATGATAGCATA 60.261 41.667 0.00 0.00 37.68 3.14
144 145 3.488047 GCTTTTGCGTGTGATGATAGCAT 60.488 43.478 0.00 0.00 37.68 3.79
145 146 2.159531 GCTTTTGCGTGTGATGATAGCA 60.160 45.455 0.00 0.00 35.90 3.49
146 147 2.444351 GCTTTTGCGTGTGATGATAGC 58.556 47.619 0.00 0.00 34.86 2.97
160 161 4.795278 GCCAGATCGATTTGTTAGCTTTTG 59.205 41.667 14.23 0.00 0.00 2.44
161 162 4.458989 TGCCAGATCGATTTGTTAGCTTTT 59.541 37.500 14.23 0.00 0.00 2.27
162 163 4.009675 TGCCAGATCGATTTGTTAGCTTT 58.990 39.130 14.23 0.00 0.00 3.51
163 164 3.609853 TGCCAGATCGATTTGTTAGCTT 58.390 40.909 14.23 0.00 0.00 3.74
164 165 3.266510 TGCCAGATCGATTTGTTAGCT 57.733 42.857 14.23 0.00 0.00 3.32
165 166 4.355543 TTTGCCAGATCGATTTGTTAGC 57.644 40.909 14.23 10.96 0.00 3.09
190 191 9.976511 AGTATTAGTGCTAACAGCGAATTATTA 57.023 29.630 0.00 0.00 46.26 0.98
191 192 8.888579 AGTATTAGTGCTAACAGCGAATTATT 57.111 30.769 0.00 0.00 46.26 1.40
192 193 8.765219 CAAGTATTAGTGCTAACAGCGAATTAT 58.235 33.333 0.00 0.00 46.26 1.28
193 194 7.223971 CCAAGTATTAGTGCTAACAGCGAATTA 59.776 37.037 0.00 0.00 46.26 1.40
194 195 6.037172 CCAAGTATTAGTGCTAACAGCGAATT 59.963 38.462 0.00 0.00 46.26 2.17
195 196 5.523916 CCAAGTATTAGTGCTAACAGCGAAT 59.476 40.000 0.00 0.00 46.26 3.34
196 197 4.868171 CCAAGTATTAGTGCTAACAGCGAA 59.132 41.667 0.00 0.00 46.26 4.70
197 198 4.158949 TCCAAGTATTAGTGCTAACAGCGA 59.841 41.667 0.00 0.00 46.26 4.93
198 199 4.430007 TCCAAGTATTAGTGCTAACAGCG 58.570 43.478 0.00 0.00 46.26 5.18
199 200 4.271291 GCTCCAAGTATTAGTGCTAACAGC 59.729 45.833 0.00 0.00 42.82 4.40
200 201 5.665459 AGCTCCAAGTATTAGTGCTAACAG 58.335 41.667 0.00 0.00 0.00 3.16
201 202 5.677319 AGCTCCAAGTATTAGTGCTAACA 57.323 39.130 0.00 0.00 0.00 2.41
202 203 5.692654 GCTAGCTCCAAGTATTAGTGCTAAC 59.307 44.000 7.70 0.00 31.39 2.34
203 204 5.507482 CGCTAGCTCCAAGTATTAGTGCTAA 60.507 44.000 13.93 0.00 31.39 3.09
204 205 4.023107 CGCTAGCTCCAAGTATTAGTGCTA 60.023 45.833 13.93 0.00 30.72 3.49
205 206 3.243569 CGCTAGCTCCAAGTATTAGTGCT 60.244 47.826 13.93 0.00 32.35 4.40
206 207 3.053455 CGCTAGCTCCAAGTATTAGTGC 58.947 50.000 13.93 0.00 0.00 4.40
207 208 4.569761 TCGCTAGCTCCAAGTATTAGTG 57.430 45.455 13.93 0.00 0.00 2.74
208 209 4.827835 TGATCGCTAGCTCCAAGTATTAGT 59.172 41.667 13.93 0.00 0.00 2.24
209 210 5.182190 TCTGATCGCTAGCTCCAAGTATTAG 59.818 44.000 13.93 1.89 0.00 1.73
210 211 5.070685 TCTGATCGCTAGCTCCAAGTATTA 58.929 41.667 13.93 0.00 0.00 0.98
211 212 3.891977 TCTGATCGCTAGCTCCAAGTATT 59.108 43.478 13.93 0.00 0.00 1.89
212 213 3.491342 TCTGATCGCTAGCTCCAAGTAT 58.509 45.455 13.93 0.00 0.00 2.12
213 214 2.932261 TCTGATCGCTAGCTCCAAGTA 58.068 47.619 13.93 0.00 0.00 2.24
214 215 1.769026 TCTGATCGCTAGCTCCAAGT 58.231 50.000 13.93 0.00 0.00 3.16
215 216 3.383620 AATCTGATCGCTAGCTCCAAG 57.616 47.619 13.93 5.64 0.00 3.61
216 217 3.827008 AAATCTGATCGCTAGCTCCAA 57.173 42.857 13.93 0.00 0.00 3.53
217 218 3.827008 AAAATCTGATCGCTAGCTCCA 57.173 42.857 13.93 6.76 0.00 3.86
218 219 4.376146 AGAAAAATCTGATCGCTAGCTCC 58.624 43.478 13.93 2.06 0.00 4.70
219 220 5.050431 GGAAGAAAAATCTGATCGCTAGCTC 60.050 44.000 13.93 5.01 0.00 4.09
220 221 4.813697 GGAAGAAAAATCTGATCGCTAGCT 59.186 41.667 13.93 0.00 0.00 3.32
221 222 4.572389 TGGAAGAAAAATCTGATCGCTAGC 59.428 41.667 4.06 4.06 0.00 3.42
222 223 5.236047 CCTGGAAGAAAAATCTGATCGCTAG 59.764 44.000 0.00 0.00 34.07 3.42
223 224 5.104941 TCCTGGAAGAAAAATCTGATCGCTA 60.105 40.000 0.00 0.00 34.07 4.26
224 225 3.944015 CCTGGAAGAAAAATCTGATCGCT 59.056 43.478 0.00 0.00 34.07 4.93
225 226 3.941483 TCCTGGAAGAAAAATCTGATCGC 59.059 43.478 0.00 0.00 34.07 4.58
226 227 6.500684 TTTCCTGGAAGAAAAATCTGATCG 57.499 37.500 9.42 0.00 34.07 3.69
227 228 6.810676 GCTTTTCCTGGAAGAAAAATCTGATC 59.189 38.462 9.42 0.00 43.27 2.92
228 229 6.496218 AGCTTTTCCTGGAAGAAAAATCTGAT 59.504 34.615 9.42 0.00 43.27 2.90
229 230 5.835280 AGCTTTTCCTGGAAGAAAAATCTGA 59.165 36.000 9.42 0.00 43.27 3.27
230 231 6.094193 AGCTTTTCCTGGAAGAAAAATCTG 57.906 37.500 9.42 0.00 43.27 2.90
231 232 6.435591 CCTAGCTTTTCCTGGAAGAAAAATCT 59.564 38.462 9.42 4.94 43.27 2.40
232 233 6.350528 CCCTAGCTTTTCCTGGAAGAAAAATC 60.351 42.308 9.42 0.00 43.27 2.17
233 234 5.481824 CCCTAGCTTTTCCTGGAAGAAAAAT 59.518 40.000 9.42 0.00 43.27 1.82
234 235 4.832823 CCCTAGCTTTTCCTGGAAGAAAAA 59.167 41.667 9.42 0.26 43.27 1.94
235 236 4.105697 TCCCTAGCTTTTCCTGGAAGAAAA 59.894 41.667 9.42 0.63 42.07 2.29
236 237 3.655777 TCCCTAGCTTTTCCTGGAAGAAA 59.344 43.478 9.42 1.36 34.07 2.52
237 238 3.256704 TCCCTAGCTTTTCCTGGAAGAA 58.743 45.455 9.42 6.56 34.07 2.52
238 239 2.915869 TCCCTAGCTTTTCCTGGAAGA 58.084 47.619 9.42 4.25 34.07 2.87
239 240 3.200825 TGATCCCTAGCTTTTCCTGGAAG 59.799 47.826 9.42 0.00 0.00 3.46
240 241 3.189606 TGATCCCTAGCTTTTCCTGGAA 58.810 45.455 4.68 4.68 0.00 3.53
241 242 2.774234 CTGATCCCTAGCTTTTCCTGGA 59.226 50.000 0.00 0.00 0.00 3.86
242 243 2.774234 TCTGATCCCTAGCTTTTCCTGG 59.226 50.000 0.00 0.00 0.00 4.45
243 244 4.703379 ATCTGATCCCTAGCTTTTCCTG 57.297 45.455 0.00 0.00 0.00 3.86
244 245 5.723860 AAATCTGATCCCTAGCTTTTCCT 57.276 39.130 0.00 0.00 0.00 3.36
245 246 6.782082 AAAAATCTGATCCCTAGCTTTTCC 57.218 37.500 0.00 0.00 0.00 3.13
268 269 2.238898 GCTAGCTACCCCTCCAGAAAAA 59.761 50.000 7.70 0.00 0.00 1.94
269 270 1.838077 GCTAGCTACCCCTCCAGAAAA 59.162 52.381 7.70 0.00 0.00 2.29
270 271 1.497161 GCTAGCTACCCCTCCAGAAA 58.503 55.000 7.70 0.00 0.00 2.52
271 272 0.755698 CGCTAGCTACCCCTCCAGAA 60.756 60.000 13.93 0.00 0.00 3.02
272 273 1.152735 CGCTAGCTACCCCTCCAGA 60.153 63.158 13.93 0.00 0.00 3.86
273 274 0.540830 ATCGCTAGCTACCCCTCCAG 60.541 60.000 13.93 0.00 0.00 3.86
274 275 0.539901 GATCGCTAGCTACCCCTCCA 60.540 60.000 13.93 0.00 0.00 3.86
275 276 0.539901 TGATCGCTAGCTACCCCTCC 60.540 60.000 13.93 0.00 0.00 4.30
276 277 0.885196 CTGATCGCTAGCTACCCCTC 59.115 60.000 13.93 0.00 0.00 4.30
277 278 0.478942 TCTGATCGCTAGCTACCCCT 59.521 55.000 13.93 0.00 0.00 4.79
278 279 1.551452 ATCTGATCGCTAGCTACCCC 58.449 55.000 13.93 0.00 0.00 4.95
279 280 4.882427 TGTATATCTGATCGCTAGCTACCC 59.118 45.833 13.93 0.00 0.00 3.69
280 281 6.627395 ATGTATATCTGATCGCTAGCTACC 57.373 41.667 13.93 0.00 0.00 3.18
282 283 9.660180 CCTATATGTATATCTGATCGCTAGCTA 57.340 37.037 13.93 1.26 0.00 3.32
283 284 7.120579 GCCTATATGTATATCTGATCGCTAGCT 59.879 40.741 13.93 0.00 0.00 3.32
284 285 7.247728 GCCTATATGTATATCTGATCGCTAGC 58.752 42.308 4.06 4.06 0.00 3.42
285 286 7.413548 CCGCCTATATGTATATCTGATCGCTAG 60.414 44.444 0.00 0.00 0.00 3.42
286 287 6.371825 CCGCCTATATGTATATCTGATCGCTA 59.628 42.308 0.00 0.00 0.00 4.26
287 288 5.182190 CCGCCTATATGTATATCTGATCGCT 59.818 44.000 0.00 0.00 0.00 4.93
288 289 5.394802 CCGCCTATATGTATATCTGATCGC 58.605 45.833 0.00 0.00 0.00 4.58
289 290 5.620205 GCCCGCCTATATGTATATCTGATCG 60.620 48.000 0.00 0.00 0.00 3.69
290 291 5.336849 GGCCCGCCTATATGTATATCTGATC 60.337 48.000 0.00 0.00 0.00 2.92
291 292 4.528596 GGCCCGCCTATATGTATATCTGAT 59.471 45.833 0.00 0.00 0.00 2.90
292 293 3.895656 GGCCCGCCTATATGTATATCTGA 59.104 47.826 0.00 0.00 0.00 3.27
293 294 3.641436 TGGCCCGCCTATATGTATATCTG 59.359 47.826 7.35 0.00 36.94 2.90
294 295 3.641906 GTGGCCCGCCTATATGTATATCT 59.358 47.826 7.35 0.00 36.94 1.98
295 296 3.244112 GGTGGCCCGCCTATATGTATATC 60.244 52.174 5.94 0.00 36.94 1.63
296 297 2.704065 GGTGGCCCGCCTATATGTATAT 59.296 50.000 5.94 0.00 36.94 0.86
297 298 2.112998 GGTGGCCCGCCTATATGTATA 58.887 52.381 5.94 0.00 36.94 1.47
298 299 0.909623 GGTGGCCCGCCTATATGTAT 59.090 55.000 5.94 0.00 36.94 2.29
299 300 1.196104 GGGTGGCCCGCCTATATGTA 61.196 60.000 14.18 0.00 32.13 2.29
300 301 2.526046 GGGTGGCCCGCCTATATGT 61.526 63.158 14.18 0.00 32.13 2.29
301 302 2.351276 GGGTGGCCCGCCTATATG 59.649 66.667 14.18 0.00 32.13 1.78
330 331 2.983592 AAAAACCAGCTCGCCCCG 60.984 61.111 0.00 0.00 0.00 5.73
350 351 9.581289 TCTCTAGTTTGTTTGATTCCCAAAATA 57.419 29.630 0.00 0.00 45.40 1.40
351 352 8.477419 TCTCTAGTTTGTTTGATTCCCAAAAT 57.523 30.769 0.00 0.00 45.40 1.82
352 353 7.889873 TCTCTAGTTTGTTTGATTCCCAAAA 57.110 32.000 0.00 0.00 45.40 2.44
353 354 7.889873 TTCTCTAGTTTGTTTGATTCCCAAA 57.110 32.000 0.00 0.00 42.07 3.28
354 355 7.889873 TTTCTCTAGTTTGTTTGATTCCCAA 57.110 32.000 0.00 0.00 0.00 4.12
355 356 8.477419 AATTTCTCTAGTTTGTTTGATTCCCA 57.523 30.769 0.00 0.00 0.00 4.37
356 357 9.196552 CAAATTTCTCTAGTTTGTTTGATTCCC 57.803 33.333 0.00 0.00 0.00 3.97
357 358 9.965824 TCAAATTTCTCTAGTTTGTTTGATTCC 57.034 29.630 0.00 0.00 35.09 3.01
360 361 9.918630 CCATCAAATTTCTCTAGTTTGTTTGAT 57.081 29.630 14.24 14.24 42.32 2.57
361 362 8.912988 ACCATCAAATTTCTCTAGTTTGTTTGA 58.087 29.630 12.03 12.03 38.14 2.69
362 363 8.971321 CACCATCAAATTTCTCTAGTTTGTTTG 58.029 33.333 0.00 0.00 35.09 2.93
363 364 8.912988 TCACCATCAAATTTCTCTAGTTTGTTT 58.087 29.630 0.00 0.00 35.09 2.83
364 365 8.463930 TCACCATCAAATTTCTCTAGTTTGTT 57.536 30.769 0.00 0.00 35.09 2.83
365 366 8.463930 TTCACCATCAAATTTCTCTAGTTTGT 57.536 30.769 0.00 0.00 35.09 2.83
366 367 9.350357 CATTCACCATCAAATTTCTCTAGTTTG 57.650 33.333 0.00 0.00 34.90 2.93
367 368 9.300681 TCATTCACCATCAAATTTCTCTAGTTT 57.699 29.630 0.00 0.00 0.00 2.66
368 369 8.868522 TCATTCACCATCAAATTTCTCTAGTT 57.131 30.769 0.00 0.00 0.00 2.24
369 370 8.868522 TTCATTCACCATCAAATTTCTCTAGT 57.131 30.769 0.00 0.00 0.00 2.57
370 371 9.565213 GTTTCATTCACCATCAAATTTCTCTAG 57.435 33.333 0.00 0.00 0.00 2.43
371 372 9.076781 TGTTTCATTCACCATCAAATTTCTCTA 57.923 29.630 0.00 0.00 0.00 2.43
372 373 7.954835 TGTTTCATTCACCATCAAATTTCTCT 58.045 30.769 0.00 0.00 0.00 3.10
373 374 8.592105 TTGTTTCATTCACCATCAAATTTCTC 57.408 30.769 0.00 0.00 0.00 2.87
374 375 8.829612 GTTTGTTTCATTCACCATCAAATTTCT 58.170 29.630 0.00 0.00 0.00 2.52
375 376 8.829612 AGTTTGTTTCATTCACCATCAAATTTC 58.170 29.630 0.00 0.00 0.00 2.17
376 377 8.735692 AGTTTGTTTCATTCACCATCAAATTT 57.264 26.923 0.00 0.00 0.00 1.82
377 378 9.480053 CTAGTTTGTTTCATTCACCATCAAATT 57.520 29.630 0.00 0.00 0.00 1.82
378 379 8.859090 TCTAGTTTGTTTCATTCACCATCAAAT 58.141 29.630 0.00 0.00 0.00 2.32
379 380 8.134895 GTCTAGTTTGTTTCATTCACCATCAAA 58.865 33.333 0.00 0.00 0.00 2.69
380 381 7.284261 TGTCTAGTTTGTTTCATTCACCATCAA 59.716 33.333 0.00 0.00 0.00 2.57
381 382 6.770303 TGTCTAGTTTGTTTCATTCACCATCA 59.230 34.615 0.00 0.00 0.00 3.07
382 383 7.202016 TGTCTAGTTTGTTTCATTCACCATC 57.798 36.000 0.00 0.00 0.00 3.51
383 384 7.581213 TTGTCTAGTTTGTTTCATTCACCAT 57.419 32.000 0.00 0.00 0.00 3.55
384 385 7.397892 TTTGTCTAGTTTGTTTCATTCACCA 57.602 32.000 0.00 0.00 0.00 4.17
385 386 9.959749 TTATTTGTCTAGTTTGTTTCATTCACC 57.040 29.630 0.00 0.00 0.00 4.02
402 403 9.471702 ACCATCTCATTTTCTCATTATTTGTCT 57.528 29.630 0.00 0.00 0.00 3.41
403 404 9.512435 CACCATCTCATTTTCTCATTATTTGTC 57.488 33.333 0.00 0.00 0.00 3.18
404 405 7.977853 GCACCATCTCATTTTCTCATTATTTGT 59.022 33.333 0.00 0.00 0.00 2.83
405 406 8.195436 AGCACCATCTCATTTTCTCATTATTTG 58.805 33.333 0.00 0.00 0.00 2.32
406 407 8.302515 AGCACCATCTCATTTTCTCATTATTT 57.697 30.769 0.00 0.00 0.00 1.40
407 408 7.893124 AGCACCATCTCATTTTCTCATTATT 57.107 32.000 0.00 0.00 0.00 1.40
408 409 8.985315 TTAGCACCATCTCATTTTCTCATTAT 57.015 30.769 0.00 0.00 0.00 1.28
409 410 8.985315 ATTAGCACCATCTCATTTTCTCATTA 57.015 30.769 0.00 0.00 0.00 1.90
410 411 7.893124 ATTAGCACCATCTCATTTTCTCATT 57.107 32.000 0.00 0.00 0.00 2.57
448 449 9.361315 CATCAACATGTGACATAACAATTTCAT 57.639 29.630 0.00 0.00 39.72 2.57
449 450 8.574737 TCATCAACATGTGACATAACAATTTCA 58.425 29.630 0.00 0.00 39.72 2.69
450 451 8.969121 TCATCAACATGTGACATAACAATTTC 57.031 30.769 0.00 0.00 39.72 2.17
451 452 7.543172 GCTCATCAACATGTGACATAACAATTT 59.457 33.333 0.00 0.00 39.72 1.82
452 453 7.031372 GCTCATCAACATGTGACATAACAATT 58.969 34.615 0.00 0.00 39.72 2.32
453 454 6.558009 GCTCATCAACATGTGACATAACAAT 58.442 36.000 0.00 0.00 39.72 2.71
454 455 5.390779 CGCTCATCAACATGTGACATAACAA 60.391 40.000 0.00 0.00 39.72 2.83
455 456 4.093261 CGCTCATCAACATGTGACATAACA 59.907 41.667 0.00 0.00 39.72 2.41
456 457 4.581493 CGCTCATCAACATGTGACATAAC 58.419 43.478 0.00 0.00 39.72 1.89
457 458 3.063861 GCGCTCATCAACATGTGACATAA 59.936 43.478 0.00 0.00 39.72 1.90
458 459 2.609002 GCGCTCATCAACATGTGACATA 59.391 45.455 0.00 0.00 39.72 2.29
459 460 1.399440 GCGCTCATCAACATGTGACAT 59.601 47.619 0.00 0.00 39.72 3.06
460 461 0.798159 GCGCTCATCAACATGTGACA 59.202 50.000 0.00 0.00 39.72 3.58
461 462 1.081892 AGCGCTCATCAACATGTGAC 58.918 50.000 2.64 0.00 39.72 3.67
462 463 2.543641 CTAGCGCTCATCAACATGTGA 58.456 47.619 16.34 0.00 41.67 3.58
463 464 1.596260 CCTAGCGCTCATCAACATGTG 59.404 52.381 16.34 0.00 0.00 3.21
464 465 1.945387 CCTAGCGCTCATCAACATGT 58.055 50.000 16.34 0.00 0.00 3.21
465 466 0.585357 GCCTAGCGCTCATCAACATG 59.415 55.000 16.34 0.00 0.00 3.21
466 467 0.178767 TGCCTAGCGCTCATCAACAT 59.821 50.000 16.34 0.00 38.78 2.71
467 468 0.178767 ATGCCTAGCGCTCATCAACA 59.821 50.000 16.34 5.48 38.78 3.33
468 469 1.795286 GTATGCCTAGCGCTCATCAAC 59.205 52.381 16.34 3.88 38.78 3.18
477 478 3.093057 AGAAGATAGGGTATGCCTAGCG 58.907 50.000 0.00 0.00 32.26 4.26
483 484 6.351456 GGTGGAGATTAGAAGATAGGGTATGC 60.351 46.154 0.00 0.00 0.00 3.14
494 495 3.274288 GCAGGTTGGTGGAGATTAGAAG 58.726 50.000 0.00 0.00 0.00 2.85
496 497 2.265367 TGCAGGTTGGTGGAGATTAGA 58.735 47.619 0.00 0.00 0.00 2.10
531 536 1.463444 CTTCGGTACCGCCTTGAAAAG 59.537 52.381 29.64 20.34 40.17 2.27
537 542 1.071814 TTTGCTTCGGTACCGCCTT 59.928 52.632 29.64 0.00 39.59 4.35
541 546 1.349259 CCGAGTTTGCTTCGGTACCG 61.349 60.000 28.66 28.66 41.62 4.02
542 547 2.452767 CCGAGTTTGCTTCGGTACC 58.547 57.895 0.16 0.16 41.62 3.34
546 551 3.454941 CAAACCGAGTTTGCTTCGG 57.545 52.632 11.74 11.74 44.59 4.30
560 565 4.048504 CGGAAGAAAATCACAACCCAAAC 58.951 43.478 0.00 0.00 0.00 2.93
561 566 3.954904 TCGGAAGAAAATCACAACCCAAA 59.045 39.130 0.00 0.00 37.03 3.28
592 597 2.708386 CCACGGCGAAATGGTAAAAA 57.292 45.000 16.62 0.00 0.00 1.94
599 604 2.911819 ATTTGTACCACGGCGAAATG 57.088 45.000 16.62 0.23 0.00 2.32
600 605 2.669950 GCAATTTGTACCACGGCGAAAT 60.670 45.455 16.62 4.88 0.00 2.17
601 606 1.335142 GCAATTTGTACCACGGCGAAA 60.335 47.619 16.62 2.13 0.00 3.46
602 607 0.238817 GCAATTTGTACCACGGCGAA 59.761 50.000 16.62 0.00 0.00 4.70
604 609 0.039978 TTGCAATTTGTACCACGGCG 60.040 50.000 4.80 4.80 0.00 6.46
605 610 1.790043 GTTTGCAATTTGTACCACGGC 59.210 47.619 0.00 0.00 0.00 5.68
685 690 1.135199 CACCATGCATGTCCAAGAAGC 60.135 52.381 24.58 0.00 0.00 3.86
717 736 3.855950 GGAGAACGTATTCCACTACAACG 59.144 47.826 12.12 0.00 39.37 4.10
818 844 0.545646 GGGAAGAGAAGCATGCCTCT 59.454 55.000 18.75 18.75 41.17 3.69
917 967 1.209128 CGAAAGGCGAGAATGCGTAT 58.791 50.000 0.00 0.00 44.57 3.06
940 990 0.900647 CCTCTTCCTGTCGGGAGTGT 60.901 60.000 0.00 0.00 46.01 3.55
959 1009 1.098050 GATTCCTGGTGCATGTGTCC 58.902 55.000 0.00 0.00 0.00 4.02
986 1036 1.375908 GCCATGGTTGACGCTGAGA 60.376 57.895 14.67 0.00 0.00 3.27
1266 1316 0.531974 GGCACTTGAACAGGACGTCA 60.532 55.000 18.91 0.00 0.00 4.35
1410 1460 1.123861 TGCAGCTCTCCTCACAGGTT 61.124 55.000 0.00 0.00 36.53 3.50
1461 1511 0.101399 CGATGCTCTTGGCTACGACT 59.899 55.000 0.00 0.00 42.39 4.18
1671 1772 4.719369 GACGACTCGGGTGCGCTT 62.719 66.667 9.73 0.00 0.00 4.68
2175 2321 1.918253 GGCAGACCCTGATGATGGT 59.082 57.895 0.00 0.00 37.64 3.55
2495 2653 4.038042 TGCACCCACGATGAACAAATAAAA 59.962 37.500 0.00 0.00 0.00 1.52
2557 2719 3.016736 ACAAAACAGTGAGGTGGAACAG 58.983 45.455 0.00 0.00 41.80 3.16
2576 2741 8.352201 CAAATTTCTTGTATTCAGACTCCAACA 58.648 33.333 0.00 0.00 0.00 3.33
2591 2758 5.477510 TGTGCACTCAAACAAATTTCTTGT 58.522 33.333 19.41 0.00 0.00 3.16
2610 2777 3.266510 TGAGAGGTTACCATGATGTGC 57.733 47.619 3.51 0.00 0.00 4.57
2713 2881 4.035675 GTGGACTTTCTCAACCAACTCAAG 59.964 45.833 0.00 0.00 34.11 3.02
2824 2992 2.581354 CGGAGTCCCAAGCAGAGG 59.419 66.667 2.80 0.00 0.00 3.69
2844 3012 2.562296 TCCTTCTCCCTATGCAAAGGT 58.438 47.619 10.17 0.00 38.12 3.50
2854 3022 0.978146 CACCCGTCATCCTTCTCCCT 60.978 60.000 0.00 0.00 0.00 4.20
2872 3040 2.992689 TAGACACCCGCTTCGCCA 60.993 61.111 0.00 0.00 0.00 5.69
2946 3115 2.978156 AGCTCACCAAAATCCTCCAA 57.022 45.000 0.00 0.00 0.00 3.53
2991 3160 6.000219 AGTGTGATTTCATAGTTTGCTGAGT 59.000 36.000 0.00 0.00 0.00 3.41
3001 3171 6.748333 ACATGTCCAAGTGTGATTTCATAG 57.252 37.500 0.00 0.00 0.00 2.23
3034 3204 1.079503 GAACACTTGTGGCGAGATCC 58.920 55.000 5.72 0.00 0.00 3.36
3041 3211 2.256117 ACACCTAGAACACTTGTGGC 57.744 50.000 5.72 0.00 0.00 5.01
3084 3254 4.458295 TGAAAGGTCTATCTTCGACTTCGT 59.542 41.667 0.00 0.00 40.80 3.85
3194 4032 1.883275 CAACCAAATTGACCACCGCTA 59.117 47.619 0.00 0.00 41.23 4.26
3227 4073 1.560505 CAGGCCCAAAGCAATTAGGT 58.439 50.000 0.00 0.00 46.50 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.