Multiple sequence alignment - TraesCS5D01G459800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G459800 chr5D 100.000 5341 0 0 1 5341 503668241 503662901 0.000000e+00 9864.0
1 TraesCS5D01G459800 chr5D 81.213 1336 151 54 3495 4787 503658076 503656798 0.000000e+00 985.0
2 TraesCS5D01G459800 chr5D 84.964 419 42 10 2535 2949 503499042 503498641 6.440000e-109 405.0
3 TraesCS5D01G459800 chr5D 85.063 395 44 10 3499 3884 503385218 503384830 6.490000e-104 388.0
4 TraesCS5D01G459800 chr5D 81.124 445 51 21 3972 4391 503497675 503497239 5.160000e-85 326.0
5 TraesCS5D01G459800 chr5D 80.631 222 33 7 5062 5275 503646191 503645972 4.280000e-36 163.0
6 TraesCS5D01G459800 chr5D 86.765 68 5 3 391 458 487270668 487270731 7.420000e-09 73.1
7 TraesCS5D01G459800 chr5A 94.321 3275 104 23 2043 5257 631658188 631654936 0.000000e+00 4942.0
8 TraesCS5D01G459800 chr5A 91.779 1484 90 17 542 2015 631659650 631658189 0.000000e+00 2036.0
9 TraesCS5D01G459800 chr5A 84.779 611 51 15 3497 4082 631648824 631648231 4.640000e-160 575.0
10 TraesCS5D01G459800 chr5A 82.662 571 54 20 3690 4231 631634503 631633949 1.050000e-126 464.0
11 TraesCS5D01G459800 chr5A 81.148 122 17 4 266 384 614739788 614739670 5.700000e-15 93.5
12 TraesCS5D01G459800 chr5B 90.357 2551 133 43 2771 5257 632147997 632145496 0.000000e+00 3243.0
13 TraesCS5D01G459800 chr5B 89.291 2624 176 50 391 2938 632150591 632147997 0.000000e+00 3192.0
14 TraesCS5D01G459800 chr5B 83.923 622 65 17 3514 4114 632131397 632130790 3.610000e-156 562.0
15 TraesCS5D01G459800 chr5B 83.846 130 14 6 269 398 546420366 546420488 3.380000e-22 117.0
16 TraesCS5D01G459800 chr5B 81.707 82 13 2 391 472 502472567 502472488 3.450000e-07 67.6
17 TraesCS5D01G459800 chr7A 90.290 793 64 11 2874 3663 48815145 48815927 0.000000e+00 1026.0
18 TraesCS5D01G459800 chr7A 91.860 86 7 0 1934 2019 117754911 117754826 2.610000e-23 121.0
19 TraesCS5D01G459800 chr7A 83.178 107 13 5 288 393 531890152 531890254 5.700000e-15 93.5
20 TraesCS5D01G459800 chr7A 81.818 110 10 8 1835 1939 63334743 63334639 3.430000e-12 84.2
21 TraesCS5D01G459800 chrUn 90.152 792 62 13 2875 3663 39529792 39529014 0.000000e+00 1016.0
22 TraesCS5D01G459800 chr6B 90.164 793 61 14 2875 3663 251826301 251825522 0.000000e+00 1016.0
23 TraesCS5D01G459800 chr6B 86.486 111 12 2 273 383 704316506 704316613 9.400000e-23 119.0
24 TraesCS5D01G459800 chr6B 84.043 94 14 1 1931 2024 462910115 462910023 7.370000e-14 89.8
25 TraesCS5D01G459800 chr4A 90.152 792 62 13 2875 3663 689236231 689237009 0.000000e+00 1016.0
26 TraesCS5D01G459800 chr4A 88.917 794 73 13 2874 3663 639966524 639967306 0.000000e+00 965.0
27 TraesCS5D01G459800 chr3B 90.152 792 62 13 2875 3663 8141538 8142316 0.000000e+00 1016.0
28 TraesCS5D01G459800 chr3B 86.473 207 28 0 2750 2956 820477369 820477163 1.500000e-55 228.0
29 TraesCS5D01G459800 chr3B 78.646 192 33 7 1835 2018 133337140 133337331 2.610000e-23 121.0
30 TraesCS5D01G459800 chr3B 83.607 122 16 3 272 392 571945625 571945507 1.570000e-20 111.0
31 TraesCS5D01G459800 chr3B 94.872 39 2 0 387 425 807075408 807075446 1.610000e-05 62.1
32 TraesCS5D01G459800 chr1A 89.786 793 67 12 2874 3663 507757576 507758357 0.000000e+00 1003.0
33 TraesCS5D01G459800 chr1A 81.000 200 25 8 5065 5262 347621547 347621359 4.310000e-31 147.0
34 TraesCS5D01G459800 chr1A 85.227 88 12 1 1931 2018 121463135 121463221 7.370000e-14 89.8
35 TraesCS5D01G459800 chr6D 97.246 581 14 2 2226 2804 436083477 436082897 0.000000e+00 983.0
36 TraesCS5D01G459800 chr6D 97.069 580 16 1 2226 2804 59228327 59227748 0.000000e+00 976.0
37 TraesCS5D01G459800 chr6D 80.500 200 23 12 1835 2024 445950839 445950646 7.210000e-29 139.0
38 TraesCS5D01G459800 chr6D 80.180 111 12 5 1832 1939 35257953 35257850 2.060000e-09 75.0
39 TraesCS5D01G459800 chr6D 81.443 97 8 6 1832 1925 35294500 35294411 2.670000e-08 71.3
40 TraesCS5D01G459800 chr6D 79.279 111 13 5 1832 1939 35243969 35243866 9.600000e-08 69.4
41 TraesCS5D01G459800 chr2A 89.394 792 68 13 2875 3663 95223414 95224192 0.000000e+00 983.0
42 TraesCS5D01G459800 chr2A 86.316 95 9 3 1835 1927 751664845 751664937 3.400000e-17 100.0
43 TraesCS5D01G459800 chr7D 97.069 580 16 1 2226 2804 213348374 213348953 0.000000e+00 976.0
44 TraesCS5D01G459800 chr7D 96.724 580 17 2 2226 2804 562210562 562209984 0.000000e+00 965.0
45 TraesCS5D01G459800 chr7D 92.135 89 7 0 1936 2024 112424101 112424013 5.620000e-25 126.0
46 TraesCS5D01G459800 chr3D 96.891 579 18 0 2226 2804 253867718 253868296 0.000000e+00 970.0
47 TraesCS5D01G459800 chr2D 96.724 580 18 1 2226 2804 312792270 312792849 0.000000e+00 965.0
48 TraesCS5D01G459800 chr2D 96.724 580 18 1 2226 2804 594328140 594327561 0.000000e+00 965.0
49 TraesCS5D01G459800 chr2D 96.713 578 18 1 2228 2804 357435082 357435659 0.000000e+00 961.0
50 TraesCS5D01G459800 chr2D 83.465 127 17 3 272 397 600340867 600340990 1.220000e-21 115.0
51 TraesCS5D01G459800 chr2B 85.024 207 31 0 2750 2956 737940650 737940444 1.510000e-50 211.0
52 TraesCS5D01G459800 chr2B 85.075 67 6 3 392 458 6733076 6733014 1.240000e-06 65.8
53 TraesCS5D01G459800 chr2B 83.077 65 7 3 390 454 441104487 441104547 7.470000e-04 56.5
54 TraesCS5D01G459800 chr1B 85.294 204 30 0 2753 2956 75073415 75073212 1.510000e-50 211.0
55 TraesCS5D01G459800 chr1B 80.625 160 20 8 247 400 655805004 655805158 4.370000e-21 113.0
56 TraesCS5D01G459800 chr1B 86.420 81 11 0 1938 2018 302478379 302478459 7.370000e-14 89.8
57 TraesCS5D01G459800 chr1B 94.872 39 1 1 390 428 405904126 405904089 5.780000e-05 60.2
58 TraesCS5D01G459800 chr7B 82.353 119 18 2 269 387 226152240 226152125 3.400000e-17 100.0
59 TraesCS5D01G459800 chr7B 92.857 42 2 1 387 428 323836117 323836157 5.780000e-05 60.2
60 TraesCS5D01G459800 chr7B 96.970 33 1 0 217 249 749243465 749243497 7.470000e-04 56.5
61 TraesCS5D01G459800 chr4B 83.019 106 14 4 288 392 625618285 625618387 5.700000e-15 93.5
62 TraesCS5D01G459800 chr4B 85.057 87 13 0 1938 2024 444098136 444098050 7.370000e-14 89.8
63 TraesCS5D01G459800 chr1D 86.957 69 9 0 1848 1916 370207269 370207201 1.590000e-10 78.7
64 TraesCS5D01G459800 chr4D 94.872 39 2 0 387 425 13604672 13604710 1.610000e-05 62.1
65 TraesCS5D01G459800 chr6A 94.595 37 1 1 5306 5341 33259269 33259233 7.470000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G459800 chr5D 503662901 503668241 5340 True 9864.0 9864 100.000 1 5341 1 chr5D.!!$R4 5340
1 TraesCS5D01G459800 chr5D 503656798 503658076 1278 True 985.0 985 81.213 3495 4787 1 chr5D.!!$R3 1292
2 TraesCS5D01G459800 chr5D 503497239 503499042 1803 True 365.5 405 83.044 2535 4391 2 chr5D.!!$R5 1856
3 TraesCS5D01G459800 chr5A 631654936 631659650 4714 True 3489.0 4942 93.050 542 5257 2 chr5A.!!$R4 4715
4 TraesCS5D01G459800 chr5A 631648231 631648824 593 True 575.0 575 84.779 3497 4082 1 chr5A.!!$R3 585
5 TraesCS5D01G459800 chr5A 631633949 631634503 554 True 464.0 464 82.662 3690 4231 1 chr5A.!!$R2 541
6 TraesCS5D01G459800 chr5B 632145496 632150591 5095 True 3217.5 3243 89.824 391 5257 2 chr5B.!!$R3 4866
7 TraesCS5D01G459800 chr5B 632130790 632131397 607 True 562.0 562 83.923 3514 4114 1 chr5B.!!$R2 600
8 TraesCS5D01G459800 chr7A 48815145 48815927 782 False 1026.0 1026 90.290 2874 3663 1 chr7A.!!$F1 789
9 TraesCS5D01G459800 chrUn 39529014 39529792 778 True 1016.0 1016 90.152 2875 3663 1 chrUn.!!$R1 788
10 TraesCS5D01G459800 chr6B 251825522 251826301 779 True 1016.0 1016 90.164 2875 3663 1 chr6B.!!$R1 788
11 TraesCS5D01G459800 chr4A 689236231 689237009 778 False 1016.0 1016 90.152 2875 3663 1 chr4A.!!$F2 788
12 TraesCS5D01G459800 chr4A 639966524 639967306 782 False 965.0 965 88.917 2874 3663 1 chr4A.!!$F1 789
13 TraesCS5D01G459800 chr3B 8141538 8142316 778 False 1016.0 1016 90.152 2875 3663 1 chr3B.!!$F1 788
14 TraesCS5D01G459800 chr1A 507757576 507758357 781 False 1003.0 1003 89.786 2874 3663 1 chr1A.!!$F2 789
15 TraesCS5D01G459800 chr6D 436082897 436083477 580 True 983.0 983 97.246 2226 2804 1 chr6D.!!$R5 578
16 TraesCS5D01G459800 chr6D 59227748 59228327 579 True 976.0 976 97.069 2226 2804 1 chr6D.!!$R4 578
17 TraesCS5D01G459800 chr2A 95223414 95224192 778 False 983.0 983 89.394 2875 3663 1 chr2A.!!$F1 788
18 TraesCS5D01G459800 chr7D 213348374 213348953 579 False 976.0 976 97.069 2226 2804 1 chr7D.!!$F1 578
19 TraesCS5D01G459800 chr7D 562209984 562210562 578 True 965.0 965 96.724 2226 2804 1 chr7D.!!$R2 578
20 TraesCS5D01G459800 chr3D 253867718 253868296 578 False 970.0 970 96.891 2226 2804 1 chr3D.!!$F1 578
21 TraesCS5D01G459800 chr2D 312792270 312792849 579 False 965.0 965 96.724 2226 2804 1 chr2D.!!$F1 578
22 TraesCS5D01G459800 chr2D 594327561 594328140 579 True 965.0 965 96.724 2226 2804 1 chr2D.!!$R1 578
23 TraesCS5D01G459800 chr2D 357435082 357435659 577 False 961.0 961 96.713 2228 2804 1 chr2D.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.031585 TGTTCGTTCGGTGGTCTCAG 59.968 55.000 0.00 0.00 0.0 3.35 F
563 565 0.178995 GTCCCTACCTCCTAGACCGG 60.179 65.000 0.00 0.00 0.0 5.28 F
1407 1441 0.912528 GTGTTCGATTCGGCGTAGTC 59.087 55.000 6.85 2.79 0.0 2.59 F
1727 1774 1.825474 ACGCACCATTACTCTGTAGCT 59.175 47.619 0.00 0.00 0.0 3.32 F
2675 2767 2.092103 AGTTTTTGGGTGACAGCTGGTA 60.092 45.455 19.93 3.01 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1310 0.179070 GAGCCTCCGAATTCCACTCC 60.179 60.000 0.00 0.0 0.00 3.85 R
2255 2327 0.322277 CAGTGAGCCAAGCCTGACAT 60.322 55.000 0.00 0.0 0.00 3.06 R
2653 2745 1.338020 CCAGCTGTCACCCAAAAACTC 59.662 52.381 13.81 0.0 0.00 3.01 R
3148 3572 1.755179 AGATTCCAGTGAATTGGCGG 58.245 50.000 0.00 0.0 41.30 6.13 R
4555 5105 2.990066 GGAACAGTCCTGAATCCGAT 57.010 50.000 0.40 0.0 41.24 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.058160 CCTTGAGGGCGCCAACTG 61.058 66.667 30.85 13.48 0.00 3.16
23 24 3.741476 CTTGAGGGCGCCAACTGC 61.741 66.667 30.85 10.59 0.00 4.40
24 25 4.269523 TTGAGGGCGCCAACTGCT 62.270 61.111 30.85 16.12 38.05 4.24
25 26 2.803155 CTTGAGGGCGCCAACTGCTA 62.803 60.000 30.85 7.90 38.05 3.49
26 27 2.820037 GAGGGCGCCAACTGCTAC 60.820 66.667 30.85 8.01 38.05 3.58
27 28 3.605749 GAGGGCGCCAACTGCTACA 62.606 63.158 30.85 0.00 38.05 2.74
28 29 2.671619 GGGCGCCAACTGCTACAA 60.672 61.111 30.85 0.00 38.05 2.41
29 30 2.561373 GGCGCCAACTGCTACAAC 59.439 61.111 24.80 0.00 38.05 3.32
30 31 2.258013 GGCGCCAACTGCTACAACA 61.258 57.895 24.80 0.00 38.05 3.33
31 32 1.586154 GGCGCCAACTGCTACAACAT 61.586 55.000 24.80 0.00 38.05 2.71
32 33 0.240945 GCGCCAACTGCTACAACATT 59.759 50.000 0.00 0.00 38.05 2.71
33 34 1.729149 GCGCCAACTGCTACAACATTC 60.729 52.381 0.00 0.00 38.05 2.67
34 35 1.535028 CGCCAACTGCTACAACATTCA 59.465 47.619 0.00 0.00 38.05 2.57
35 36 2.665519 CGCCAACTGCTACAACATTCAC 60.666 50.000 0.00 0.00 38.05 3.18
36 37 2.554032 GCCAACTGCTACAACATTCACT 59.446 45.455 0.00 0.00 36.87 3.41
37 38 3.004734 GCCAACTGCTACAACATTCACTT 59.995 43.478 0.00 0.00 36.87 3.16
38 39 4.215399 GCCAACTGCTACAACATTCACTTA 59.785 41.667 0.00 0.00 36.87 2.24
39 40 5.617751 GCCAACTGCTACAACATTCACTTAG 60.618 44.000 0.00 0.00 36.87 2.18
40 41 5.470098 CCAACTGCTACAACATTCACTTAGT 59.530 40.000 0.00 0.00 0.00 2.24
41 42 6.347725 CCAACTGCTACAACATTCACTTAGTC 60.348 42.308 0.00 0.00 0.00 2.59
42 43 4.923871 ACTGCTACAACATTCACTTAGTCG 59.076 41.667 0.00 0.00 0.00 4.18
43 44 5.128992 TGCTACAACATTCACTTAGTCGA 57.871 39.130 0.00 0.00 0.00 4.20
44 45 5.161358 TGCTACAACATTCACTTAGTCGAG 58.839 41.667 0.00 0.00 0.00 4.04
45 46 4.563184 GCTACAACATTCACTTAGTCGAGG 59.437 45.833 0.00 0.00 0.00 4.63
46 47 4.866508 ACAACATTCACTTAGTCGAGGA 57.133 40.909 0.00 0.00 0.00 3.71
47 48 5.407407 ACAACATTCACTTAGTCGAGGAT 57.593 39.130 0.00 0.00 0.00 3.24
48 49 5.171476 ACAACATTCACTTAGTCGAGGATG 58.829 41.667 0.00 0.00 0.00 3.51
49 50 5.047306 ACAACATTCACTTAGTCGAGGATGA 60.047 40.000 0.00 0.00 0.00 2.92
50 51 5.860941 ACATTCACTTAGTCGAGGATGAT 57.139 39.130 0.00 0.00 0.00 2.45
51 52 5.595885 ACATTCACTTAGTCGAGGATGATG 58.404 41.667 0.00 0.00 0.00 3.07
52 53 5.360999 ACATTCACTTAGTCGAGGATGATGA 59.639 40.000 0.00 0.00 0.00 2.92
53 54 6.041409 ACATTCACTTAGTCGAGGATGATGAT 59.959 38.462 0.00 0.00 0.00 2.45
54 55 7.231519 ACATTCACTTAGTCGAGGATGATGATA 59.768 37.037 0.00 0.00 0.00 2.15
55 56 7.582667 TTCACTTAGTCGAGGATGATGATAA 57.417 36.000 0.00 0.00 0.00 1.75
56 57 7.767250 TCACTTAGTCGAGGATGATGATAAT 57.233 36.000 0.00 0.00 0.00 1.28
57 58 7.597386 TCACTTAGTCGAGGATGATGATAATG 58.403 38.462 0.00 0.00 0.00 1.90
58 59 7.448469 TCACTTAGTCGAGGATGATGATAATGA 59.552 37.037 0.00 0.00 0.00 2.57
59 60 8.084684 CACTTAGTCGAGGATGATGATAATGAA 58.915 37.037 0.00 0.00 0.00 2.57
60 61 8.303156 ACTTAGTCGAGGATGATGATAATGAAG 58.697 37.037 0.00 0.00 0.00 3.02
61 62 6.907853 AGTCGAGGATGATGATAATGAAGA 57.092 37.500 0.00 0.00 0.00 2.87
62 63 6.686630 AGTCGAGGATGATGATAATGAAGAC 58.313 40.000 0.00 0.00 0.00 3.01
63 64 5.866633 GTCGAGGATGATGATAATGAAGACC 59.133 44.000 0.00 0.00 0.00 3.85
64 65 5.777223 TCGAGGATGATGATAATGAAGACCT 59.223 40.000 0.00 0.00 0.00 3.85
65 66 6.071672 TCGAGGATGATGATAATGAAGACCTC 60.072 42.308 0.00 0.00 37.43 3.85
66 67 6.294955 CGAGGATGATGATAATGAAGACCTCA 60.295 42.308 0.00 0.00 39.75 3.86
79 80 6.968131 TGAAGACCTCATTGAAGTTAATCG 57.032 37.500 0.00 0.00 0.00 3.34
80 81 5.874810 TGAAGACCTCATTGAAGTTAATCGG 59.125 40.000 0.00 0.00 0.00 4.18
81 82 4.770795 AGACCTCATTGAAGTTAATCGGG 58.229 43.478 0.00 0.00 0.00 5.14
82 83 4.469945 AGACCTCATTGAAGTTAATCGGGA 59.530 41.667 0.00 0.00 0.00 5.14
83 84 5.131142 AGACCTCATTGAAGTTAATCGGGAT 59.869 40.000 0.00 0.00 0.00 3.85
84 85 6.326583 AGACCTCATTGAAGTTAATCGGGATA 59.673 38.462 0.00 0.00 0.00 2.59
85 86 6.895782 ACCTCATTGAAGTTAATCGGGATAA 58.104 36.000 0.00 0.00 0.00 1.75
86 87 7.343357 ACCTCATTGAAGTTAATCGGGATAAA 58.657 34.615 0.00 0.00 0.00 1.40
87 88 7.998964 ACCTCATTGAAGTTAATCGGGATAAAT 59.001 33.333 0.00 0.00 0.00 1.40
88 89 8.292448 CCTCATTGAAGTTAATCGGGATAAATG 58.708 37.037 0.00 0.00 0.00 2.32
89 90 8.746052 TCATTGAAGTTAATCGGGATAAATGT 57.254 30.769 0.00 0.00 0.00 2.71
90 91 9.839817 TCATTGAAGTTAATCGGGATAAATGTA 57.160 29.630 0.00 0.00 0.00 2.29
98 99 9.939802 GTTAATCGGGATAAATGTATTAGGAGT 57.060 33.333 0.00 0.00 0.00 3.85
101 102 7.713734 TCGGGATAAATGTATTAGGAGTAGG 57.286 40.000 0.00 0.00 0.00 3.18
102 103 6.666546 TCGGGATAAATGTATTAGGAGTAGGG 59.333 42.308 0.00 0.00 0.00 3.53
103 104 6.127140 CGGGATAAATGTATTAGGAGTAGGGG 60.127 46.154 0.00 0.00 0.00 4.79
104 105 6.734281 GGGATAAATGTATTAGGAGTAGGGGT 59.266 42.308 0.00 0.00 0.00 4.95
105 106 7.239143 GGGATAAATGTATTAGGAGTAGGGGTT 59.761 40.741 0.00 0.00 0.00 4.11
106 107 8.101419 GGATAAATGTATTAGGAGTAGGGGTTG 58.899 40.741 0.00 0.00 0.00 3.77
107 108 6.903340 AAATGTATTAGGAGTAGGGGTTGT 57.097 37.500 0.00 0.00 0.00 3.32
108 109 5.888982 ATGTATTAGGAGTAGGGGTTGTG 57.111 43.478 0.00 0.00 0.00 3.33
109 110 3.453353 TGTATTAGGAGTAGGGGTTGTGC 59.547 47.826 0.00 0.00 0.00 4.57
110 111 2.032965 TTAGGAGTAGGGGTTGTGCA 57.967 50.000 0.00 0.00 0.00 4.57
111 112 1.272807 TAGGAGTAGGGGTTGTGCAC 58.727 55.000 10.75 10.75 0.00 4.57
112 113 0.473886 AGGAGTAGGGGTTGTGCACT 60.474 55.000 19.41 0.00 0.00 4.40
113 114 0.400594 GGAGTAGGGGTTGTGCACTT 59.599 55.000 19.41 0.00 0.00 3.16
114 115 1.523758 GAGTAGGGGTTGTGCACTTG 58.476 55.000 19.41 0.00 0.00 3.16
115 116 1.071699 GAGTAGGGGTTGTGCACTTGA 59.928 52.381 19.41 0.90 0.00 3.02
116 117 1.705186 AGTAGGGGTTGTGCACTTGAT 59.295 47.619 19.41 1.88 0.00 2.57
117 118 1.812571 GTAGGGGTTGTGCACTTGATG 59.187 52.381 19.41 0.00 0.00 3.07
118 119 0.478072 AGGGGTTGTGCACTTGATGA 59.522 50.000 19.41 0.00 0.00 2.92
119 120 0.598065 GGGGTTGTGCACTTGATGAC 59.402 55.000 19.41 6.91 0.00 3.06
120 121 1.317613 GGGTTGTGCACTTGATGACA 58.682 50.000 19.41 0.00 0.00 3.58
121 122 1.680735 GGGTTGTGCACTTGATGACAA 59.319 47.619 19.41 0.00 34.65 3.18
122 123 2.543653 GGGTTGTGCACTTGATGACAAC 60.544 50.000 19.41 10.91 42.48 3.32
123 124 2.731217 GTTGTGCACTTGATGACAACC 58.269 47.619 19.41 0.00 40.14 3.77
124 125 2.049888 TGTGCACTTGATGACAACCA 57.950 45.000 19.41 0.00 32.27 3.67
125 126 2.585330 TGTGCACTTGATGACAACCAT 58.415 42.857 19.41 0.00 38.43 3.55
137 138 6.279227 GATGACAACCATCTTCATAAGACG 57.721 41.667 0.00 0.00 46.33 4.18
138 139 5.400066 TGACAACCATCTTCATAAGACGA 57.600 39.130 0.00 0.00 41.01 4.20
139 140 5.410924 TGACAACCATCTTCATAAGACGAG 58.589 41.667 0.00 0.00 41.01 4.18
140 141 5.185056 TGACAACCATCTTCATAAGACGAGA 59.815 40.000 0.00 0.00 41.01 4.04
141 142 6.127338 TGACAACCATCTTCATAAGACGAGAT 60.127 38.462 0.00 0.00 41.01 2.75
142 143 7.068226 TGACAACCATCTTCATAAGACGAGATA 59.932 37.037 0.00 0.00 41.01 1.98
143 144 7.782049 ACAACCATCTTCATAAGACGAGATAA 58.218 34.615 0.00 0.00 41.01 1.75
144 145 7.923344 ACAACCATCTTCATAAGACGAGATAAG 59.077 37.037 0.00 0.00 41.01 1.73
145 146 6.987386 ACCATCTTCATAAGACGAGATAAGG 58.013 40.000 0.00 0.00 41.01 2.69
146 147 6.551601 ACCATCTTCATAAGACGAGATAAGGT 59.448 38.462 0.00 0.00 41.01 3.50
147 148 7.724506 ACCATCTTCATAAGACGAGATAAGGTA 59.275 37.037 0.00 0.00 41.01 3.08
148 149 8.744652 CCATCTTCATAAGACGAGATAAGGTAT 58.255 37.037 0.00 0.00 41.01 2.73
151 152 9.788889 TCTTCATAAGACGAGATAAGGTATACA 57.211 33.333 5.01 0.00 31.20 2.29
152 153 9.828852 CTTCATAAGACGAGATAAGGTATACAC 57.171 37.037 5.01 0.00 0.00 2.90
153 154 8.913487 TCATAAGACGAGATAAGGTATACACA 57.087 34.615 5.01 0.00 0.00 3.72
154 155 9.346005 TCATAAGACGAGATAAGGTATACACAA 57.654 33.333 5.01 0.00 0.00 3.33
155 156 9.613957 CATAAGACGAGATAAGGTATACACAAG 57.386 37.037 5.01 0.00 0.00 3.16
156 157 7.876936 AAGACGAGATAAGGTATACACAAGA 57.123 36.000 5.01 0.00 0.00 3.02
157 158 8.466617 AAGACGAGATAAGGTATACACAAGAT 57.533 34.615 5.01 0.00 0.00 2.40
158 159 9.570468 AAGACGAGATAAGGTATACACAAGATA 57.430 33.333 5.01 0.00 0.00 1.98
159 160 9.570468 AGACGAGATAAGGTATACACAAGATAA 57.430 33.333 5.01 0.00 0.00 1.75
168 169 9.959721 AAGGTATACACAAGATAAAAGTGTCAT 57.040 29.630 5.01 0.00 44.61 3.06
169 170 9.601217 AGGTATACACAAGATAAAAGTGTCATC 57.399 33.333 5.01 0.00 44.61 2.92
170 171 8.540492 GGTATACACAAGATAAAAGTGTCATCG 58.460 37.037 5.01 0.00 44.61 3.84
171 172 9.297586 GTATACACAAGATAAAAGTGTCATCGA 57.702 33.333 0.22 0.00 44.61 3.59
172 173 6.467723 ACACAAGATAAAAGTGTCATCGAC 57.532 37.500 0.00 0.00 42.36 4.20
173 174 5.989168 ACACAAGATAAAAGTGTCATCGACA 59.011 36.000 0.00 0.00 42.36 4.35
174 175 6.481976 ACACAAGATAAAAGTGTCATCGACAA 59.518 34.615 0.00 0.00 44.49 3.18
175 176 7.011773 CACAAGATAAAAGTGTCATCGACAAG 58.988 38.462 0.00 0.00 44.49 3.16
176 177 6.147821 ACAAGATAAAAGTGTCATCGACAAGG 59.852 38.462 0.00 0.00 44.49 3.61
177 178 4.631813 AGATAAAAGTGTCATCGACAAGGC 59.368 41.667 0.00 0.00 44.49 4.35
178 179 1.523758 AAAGTGTCATCGACAAGGCC 58.476 50.000 0.00 0.00 44.49 5.19
179 180 0.670546 AAGTGTCATCGACAAGGCCG 60.671 55.000 0.00 0.00 44.49 6.13
180 181 1.080093 GTGTCATCGACAAGGCCGA 60.080 57.895 0.00 0.00 44.49 5.54
181 182 0.669318 GTGTCATCGACAAGGCCGAA 60.669 55.000 0.00 0.00 44.49 4.30
182 183 0.669318 TGTCATCGACAAGGCCGAAC 60.669 55.000 0.00 0.00 39.78 3.95
183 184 0.669318 GTCATCGACAAGGCCGAACA 60.669 55.000 0.00 0.00 39.62 3.18
184 185 0.389817 TCATCGACAAGGCCGAACAG 60.390 55.000 0.00 0.00 39.62 3.16
185 186 1.741770 ATCGACAAGGCCGAACAGC 60.742 57.895 0.00 0.00 39.62 4.40
186 187 3.777925 CGACAAGGCCGAACAGCG 61.778 66.667 0.00 0.00 40.47 5.18
187 188 2.357034 GACAAGGCCGAACAGCGA 60.357 61.111 0.00 0.00 44.57 4.93
188 189 1.741770 GACAAGGCCGAACAGCGAT 60.742 57.895 0.00 0.00 44.57 4.58
189 190 1.970917 GACAAGGCCGAACAGCGATG 61.971 60.000 0.00 0.00 44.57 3.84
190 191 3.127533 AAGGCCGAACAGCGATGC 61.128 61.111 0.00 0.00 44.57 3.91
193 194 4.210304 GCCGAACAGCGATGCGTC 62.210 66.667 0.00 0.00 44.57 5.19
203 204 4.796231 GATGCGTCGACGGCCTGT 62.796 66.667 36.13 17.61 40.23 4.00
204 205 4.373116 ATGCGTCGACGGCCTGTT 62.373 61.111 36.13 12.53 40.23 3.16
206 207 4.719369 GCGTCGACGGCCTGTTCT 62.719 66.667 36.13 0.00 40.23 3.01
207 208 2.805353 CGTCGACGGCCTGTTCTG 60.805 66.667 29.70 0.00 35.37 3.02
208 209 2.432628 GTCGACGGCCTGTTCTGG 60.433 66.667 0.00 0.00 0.00 3.86
215 216 3.869272 GCCTGTTCTGGCGCATCG 61.869 66.667 10.83 0.00 43.74 3.84
216 217 3.197790 CCTGTTCTGGCGCATCGG 61.198 66.667 10.83 0.00 0.00 4.18
217 218 2.434884 CTGTTCTGGCGCATCGGT 60.435 61.111 10.83 0.00 0.00 4.69
218 219 2.741985 TGTTCTGGCGCATCGGTG 60.742 61.111 10.83 0.00 0.00 4.94
219 220 2.742372 GTTCTGGCGCATCGGTGT 60.742 61.111 10.83 0.00 0.00 4.16
220 221 2.031919 TTCTGGCGCATCGGTGTT 59.968 55.556 10.83 0.00 0.00 3.32
221 222 2.032634 TTCTGGCGCATCGGTGTTC 61.033 57.895 10.83 0.00 0.00 3.18
222 223 3.853330 CTGGCGCATCGGTGTTCG 61.853 66.667 10.83 0.00 40.90 3.95
223 224 4.673298 TGGCGCATCGGTGTTCGT 62.673 61.111 10.83 0.00 40.32 3.85
224 225 3.419759 GGCGCATCGGTGTTCGTT 61.420 61.111 10.83 0.00 40.32 3.85
225 226 2.095843 GCGCATCGGTGTTCGTTC 59.904 61.111 0.30 0.00 40.32 3.95
226 227 2.390288 CGCATCGGTGTTCGTTCG 59.610 61.111 0.00 0.00 40.32 3.95
227 228 2.776072 GCATCGGTGTTCGTTCGG 59.224 61.111 0.00 0.00 40.32 4.30
228 229 2.025418 GCATCGGTGTTCGTTCGGT 61.025 57.895 0.00 0.00 40.32 4.69
229 230 1.779061 CATCGGTGTTCGTTCGGTG 59.221 57.895 0.00 0.00 40.32 4.94
230 231 1.373748 ATCGGTGTTCGTTCGGTGG 60.374 57.895 0.00 0.00 40.32 4.61
231 232 2.091102 ATCGGTGTTCGTTCGGTGGT 62.091 55.000 0.00 0.00 40.32 4.16
232 233 2.305127 CGGTGTTCGTTCGGTGGTC 61.305 63.158 0.00 0.00 0.00 4.02
233 234 1.068585 GGTGTTCGTTCGGTGGTCT 59.931 57.895 0.00 0.00 0.00 3.85
234 235 0.942884 GGTGTTCGTTCGGTGGTCTC 60.943 60.000 0.00 0.00 0.00 3.36
235 236 0.249155 GTGTTCGTTCGGTGGTCTCA 60.249 55.000 0.00 0.00 0.00 3.27
236 237 0.031585 TGTTCGTTCGGTGGTCTCAG 59.968 55.000 0.00 0.00 0.00 3.35
237 238 0.313043 GTTCGTTCGGTGGTCTCAGA 59.687 55.000 0.00 0.00 0.00 3.27
238 239 1.034356 TTCGTTCGGTGGTCTCAGAA 58.966 50.000 0.00 0.00 0.00 3.02
239 240 1.254026 TCGTTCGGTGGTCTCAGAAT 58.746 50.000 0.00 0.00 0.00 2.40
240 241 1.201647 TCGTTCGGTGGTCTCAGAATC 59.798 52.381 0.00 0.00 0.00 2.52
241 242 1.202582 CGTTCGGTGGTCTCAGAATCT 59.797 52.381 0.00 0.00 0.00 2.40
242 243 2.352814 CGTTCGGTGGTCTCAGAATCTT 60.353 50.000 0.00 0.00 0.00 2.40
243 244 2.996621 GTTCGGTGGTCTCAGAATCTTG 59.003 50.000 0.00 0.00 0.00 3.02
244 245 2.525368 TCGGTGGTCTCAGAATCTTGA 58.475 47.619 0.00 0.00 0.00 3.02
245 246 2.231478 TCGGTGGTCTCAGAATCTTGAC 59.769 50.000 5.05 5.05 0.00 3.18
246 247 2.029020 CGGTGGTCTCAGAATCTTGACA 60.029 50.000 12.87 0.82 0.00 3.58
247 248 3.368843 CGGTGGTCTCAGAATCTTGACAT 60.369 47.826 12.87 0.00 0.00 3.06
248 249 4.142160 CGGTGGTCTCAGAATCTTGACATA 60.142 45.833 12.87 2.19 0.00 2.29
249 250 5.112686 GGTGGTCTCAGAATCTTGACATAC 58.887 45.833 12.87 10.88 0.00 2.39
250 251 5.105146 GGTGGTCTCAGAATCTTGACATACT 60.105 44.000 12.87 0.00 0.00 2.12
251 252 6.039616 GTGGTCTCAGAATCTTGACATACTC 58.960 44.000 12.87 0.11 0.00 2.59
252 253 5.127845 TGGTCTCAGAATCTTGACATACTCC 59.872 44.000 12.87 0.00 0.00 3.85
253 254 5.452636 GGTCTCAGAATCTTGACATACTCCC 60.453 48.000 12.87 0.00 0.00 4.30
254 255 5.362430 GTCTCAGAATCTTGACATACTCCCT 59.638 44.000 7.88 0.00 0.00 4.20
255 256 5.596361 TCTCAGAATCTTGACATACTCCCTC 59.404 44.000 0.00 0.00 0.00 4.30
256 257 4.651503 TCAGAATCTTGACATACTCCCTCC 59.348 45.833 0.00 0.00 0.00 4.30
257 258 4.406972 CAGAATCTTGACATACTCCCTCCA 59.593 45.833 0.00 0.00 0.00 3.86
258 259 4.407296 AGAATCTTGACATACTCCCTCCAC 59.593 45.833 0.00 0.00 0.00 4.02
259 260 3.474798 TCTTGACATACTCCCTCCACT 57.525 47.619 0.00 0.00 0.00 4.00
260 261 3.366396 TCTTGACATACTCCCTCCACTC 58.634 50.000 0.00 0.00 0.00 3.51
261 262 2.160721 TGACATACTCCCTCCACTCC 57.839 55.000 0.00 0.00 0.00 3.85
262 263 1.361197 TGACATACTCCCTCCACTCCA 59.639 52.381 0.00 0.00 0.00 3.86
263 264 1.757699 GACATACTCCCTCCACTCCAC 59.242 57.143 0.00 0.00 0.00 4.02
264 265 1.078823 ACATACTCCCTCCACTCCACA 59.921 52.381 0.00 0.00 0.00 4.17
265 266 2.187958 CATACTCCCTCCACTCCACAA 58.812 52.381 0.00 0.00 0.00 3.33
266 267 2.642171 TACTCCCTCCACTCCACAAT 57.358 50.000 0.00 0.00 0.00 2.71
267 268 2.642171 ACTCCCTCCACTCCACAATA 57.358 50.000 0.00 0.00 0.00 1.90
268 269 3.136641 ACTCCCTCCACTCCACAATAT 57.863 47.619 0.00 0.00 0.00 1.28
269 270 3.041946 ACTCCCTCCACTCCACAATATC 58.958 50.000 0.00 0.00 0.00 1.63
270 271 2.036475 CTCCCTCCACTCCACAATATCG 59.964 54.545 0.00 0.00 0.00 2.92
271 272 2.039418 CCCTCCACTCCACAATATCGA 58.961 52.381 0.00 0.00 0.00 3.59
272 273 2.434336 CCCTCCACTCCACAATATCGAA 59.566 50.000 0.00 0.00 0.00 3.71
273 274 3.071602 CCCTCCACTCCACAATATCGAAT 59.928 47.826 0.00 0.00 0.00 3.34
274 275 4.283467 CCCTCCACTCCACAATATCGAATA 59.717 45.833 0.00 0.00 0.00 1.75
275 276 5.046304 CCCTCCACTCCACAATATCGAATAT 60.046 44.000 0.00 0.00 0.00 1.28
276 277 5.871524 CCTCCACTCCACAATATCGAATATG 59.128 44.000 0.00 0.00 0.00 1.78
277 278 6.295292 CCTCCACTCCACAATATCGAATATGA 60.295 42.308 0.00 0.00 0.00 2.15
278 279 7.061566 TCCACTCCACAATATCGAATATGAA 57.938 36.000 0.00 0.00 0.00 2.57
279 280 6.929049 TCCACTCCACAATATCGAATATGAAC 59.071 38.462 0.00 0.00 0.00 3.18
280 281 6.931281 CCACTCCACAATATCGAATATGAACT 59.069 38.462 0.00 0.00 0.00 3.01
281 282 7.116948 CCACTCCACAATATCGAATATGAACTC 59.883 40.741 0.00 0.00 0.00 3.01
282 283 7.653311 CACTCCACAATATCGAATATGAACTCA 59.347 37.037 0.00 0.00 0.00 3.41
283 284 7.869937 ACTCCACAATATCGAATATGAACTCAG 59.130 37.037 0.00 0.00 0.00 3.35
284 285 7.726216 TCCACAATATCGAATATGAACTCAGT 58.274 34.615 0.00 0.00 0.00 3.41
285 286 7.653311 TCCACAATATCGAATATGAACTCAGTG 59.347 37.037 0.00 0.00 0.00 3.66
286 287 7.095481 CCACAATATCGAATATGAACTCAGTGG 60.095 40.741 0.00 0.00 34.15 4.00
287 288 7.439356 CACAATATCGAATATGAACTCAGTGGT 59.561 37.037 0.00 0.00 0.00 4.16
288 289 8.638873 ACAATATCGAATATGAACTCAGTGGTA 58.361 33.333 0.00 0.00 0.00 3.25
289 290 9.645059 CAATATCGAATATGAACTCAGTGGTAT 57.355 33.333 0.00 0.00 0.00 2.73
299 300 7.759489 TGAACTCAGTGGTATAATTTTTGCT 57.241 32.000 0.00 0.00 0.00 3.91
300 301 7.816640 TGAACTCAGTGGTATAATTTTTGCTC 58.183 34.615 0.00 0.00 0.00 4.26
301 302 6.759497 ACTCAGTGGTATAATTTTTGCTCC 57.241 37.500 0.00 0.00 0.00 4.70
302 303 5.652452 ACTCAGTGGTATAATTTTTGCTCCC 59.348 40.000 0.00 0.00 0.00 4.30
303 304 4.638421 TCAGTGGTATAATTTTTGCTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
304 305 3.380320 AGTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
305 306 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
306 307 2.287368 GGTATAATTTTTGCTCCCGCCG 60.287 50.000 0.00 0.00 34.43 6.46
307 308 1.470051 ATAATTTTTGCTCCCGCCGT 58.530 45.000 0.00 0.00 34.43 5.68
308 309 2.110901 TAATTTTTGCTCCCGCCGTA 57.889 45.000 0.00 0.00 34.43 4.02
309 310 0.808755 AATTTTTGCTCCCGCCGTAG 59.191 50.000 0.00 0.00 34.43 3.51
310 311 0.322187 ATTTTTGCTCCCGCCGTAGT 60.322 50.000 0.00 0.00 34.43 2.73
311 312 0.952010 TTTTTGCTCCCGCCGTAGTC 60.952 55.000 0.00 0.00 34.43 2.59
312 313 3.636313 TTTGCTCCCGCCGTAGTCG 62.636 63.158 0.00 0.00 34.43 4.18
324 325 2.649331 CGTAGTCGGTCTCATTGGTT 57.351 50.000 0.00 0.00 0.00 3.67
325 326 3.770263 CGTAGTCGGTCTCATTGGTTA 57.230 47.619 0.00 0.00 0.00 2.85
326 327 4.100707 CGTAGTCGGTCTCATTGGTTAA 57.899 45.455 0.00 0.00 0.00 2.01
327 328 4.487948 CGTAGTCGGTCTCATTGGTTAAA 58.512 43.478 0.00 0.00 0.00 1.52
328 329 4.325472 CGTAGTCGGTCTCATTGGTTAAAC 59.675 45.833 0.00 0.00 0.00 2.01
329 330 3.323243 AGTCGGTCTCATTGGTTAAACG 58.677 45.455 0.00 0.00 0.00 3.60
330 331 3.062042 GTCGGTCTCATTGGTTAAACGT 58.938 45.455 0.00 0.00 0.00 3.99
331 332 4.022068 AGTCGGTCTCATTGGTTAAACGTA 60.022 41.667 0.00 0.00 0.00 3.57
332 333 4.866486 GTCGGTCTCATTGGTTAAACGTAT 59.134 41.667 0.00 0.00 0.00 3.06
333 334 4.865925 TCGGTCTCATTGGTTAAACGTATG 59.134 41.667 0.00 0.25 0.00 2.39
334 335 4.033587 CGGTCTCATTGGTTAAACGTATGG 59.966 45.833 0.00 0.00 0.00 2.74
335 336 4.939439 GGTCTCATTGGTTAAACGTATGGT 59.061 41.667 0.00 0.00 0.00 3.55
336 337 5.064325 GGTCTCATTGGTTAAACGTATGGTC 59.936 44.000 0.00 0.00 0.00 4.02
337 338 5.640357 GTCTCATTGGTTAAACGTATGGTCA 59.360 40.000 0.00 0.00 0.00 4.02
338 339 6.148150 GTCTCATTGGTTAAACGTATGGTCAA 59.852 38.462 0.00 0.00 0.00 3.18
339 340 6.711194 TCTCATTGGTTAAACGTATGGTCAAA 59.289 34.615 0.00 0.00 0.00 2.69
340 341 7.392113 TCTCATTGGTTAAACGTATGGTCAAAT 59.608 33.333 0.00 0.00 0.00 2.32
341 342 7.887381 TCATTGGTTAAACGTATGGTCAAATT 58.113 30.769 0.00 0.00 0.00 1.82
342 343 8.361139 TCATTGGTTAAACGTATGGTCAAATTT 58.639 29.630 0.00 0.00 0.00 1.82
343 344 9.627395 CATTGGTTAAACGTATGGTCAAATTTA 57.373 29.630 0.00 0.00 0.00 1.40
344 345 9.849166 ATTGGTTAAACGTATGGTCAAATTTAG 57.151 29.630 0.00 0.00 0.00 1.85
345 346 8.618702 TGGTTAAACGTATGGTCAAATTTAGA 57.381 30.769 0.00 0.00 0.00 2.10
346 347 9.233649 TGGTTAAACGTATGGTCAAATTTAGAT 57.766 29.630 0.00 0.00 0.00 1.98
347 348 9.712359 GGTTAAACGTATGGTCAAATTTAGATC 57.288 33.333 0.00 0.00 0.00 2.75
350 351 7.464830 AACGTATGGTCAAATTTAGATCTCG 57.535 36.000 0.00 0.00 0.00 4.04
351 352 6.802608 ACGTATGGTCAAATTTAGATCTCGA 58.197 36.000 0.00 0.00 0.00 4.04
352 353 7.262772 ACGTATGGTCAAATTTAGATCTCGAA 58.737 34.615 0.00 0.00 0.00 3.71
353 354 7.762615 ACGTATGGTCAAATTTAGATCTCGAAA 59.237 33.333 0.00 0.00 0.00 3.46
354 355 8.600625 CGTATGGTCAAATTTAGATCTCGAAAA 58.399 33.333 0.00 0.00 0.00 2.29
355 356 9.922305 GTATGGTCAAATTTAGATCTCGAAAAG 57.078 33.333 0.00 0.00 0.00 2.27
356 357 6.842163 TGGTCAAATTTAGATCTCGAAAAGC 58.158 36.000 0.00 0.00 0.00 3.51
357 358 5.960105 GGTCAAATTTAGATCTCGAAAAGCG 59.040 40.000 0.00 0.00 42.69 4.68
358 359 5.449430 GTCAAATTTAGATCTCGAAAAGCGC 59.551 40.000 0.00 0.00 40.61 5.92
359 360 3.843426 ATTTAGATCTCGAAAAGCGCG 57.157 42.857 0.00 0.00 40.61 6.86
360 361 2.554806 TTAGATCTCGAAAAGCGCGA 57.445 45.000 12.10 0.00 40.61 5.87
361 362 2.554806 TAGATCTCGAAAAGCGCGAA 57.445 45.000 12.10 0.00 37.27 4.70
362 363 0.992802 AGATCTCGAAAAGCGCGAAC 59.007 50.000 12.10 0.00 37.27 3.95
363 364 0.992802 GATCTCGAAAAGCGCGAACT 59.007 50.000 12.10 0.00 37.27 3.01
364 365 1.390463 GATCTCGAAAAGCGCGAACTT 59.610 47.619 12.10 0.49 37.27 2.66
365 366 2.054687 TCTCGAAAAGCGCGAACTTA 57.945 45.000 12.10 0.00 40.61 2.24
366 367 1.717645 TCTCGAAAAGCGCGAACTTAC 59.282 47.619 12.10 2.13 40.61 2.34
367 368 1.719780 CTCGAAAAGCGCGAACTTACT 59.280 47.619 12.10 0.00 40.61 2.24
368 369 2.912967 CTCGAAAAGCGCGAACTTACTA 59.087 45.455 12.10 0.00 40.61 1.82
369 370 2.658325 TCGAAAAGCGCGAACTTACTAC 59.342 45.455 12.10 0.00 40.61 2.73
370 371 2.660236 CGAAAAGCGCGAACTTACTACT 59.340 45.455 12.10 0.00 0.00 2.57
371 372 3.848019 CGAAAAGCGCGAACTTACTACTA 59.152 43.478 12.10 0.00 0.00 1.82
372 373 4.258782 CGAAAAGCGCGAACTTACTACTAC 60.259 45.833 12.10 0.00 0.00 2.73
373 374 3.837213 AAGCGCGAACTTACTACTACA 57.163 42.857 12.10 0.00 0.00 2.74
374 375 4.367386 AAGCGCGAACTTACTACTACAT 57.633 40.909 12.10 0.00 0.00 2.29
375 376 4.367386 AGCGCGAACTTACTACTACATT 57.633 40.909 12.10 0.00 0.00 2.71
376 377 5.490139 AGCGCGAACTTACTACTACATTA 57.510 39.130 12.10 0.00 0.00 1.90
377 378 6.069684 AGCGCGAACTTACTACTACATTAT 57.930 37.500 12.10 0.00 0.00 1.28
378 379 5.913514 AGCGCGAACTTACTACTACATTATG 59.086 40.000 12.10 0.00 0.00 1.90
379 380 5.116680 GCGCGAACTTACTACTACATTATGG 59.883 44.000 12.10 0.00 0.00 2.74
380 381 6.432936 CGCGAACTTACTACTACATTATGGA 58.567 40.000 0.00 0.00 0.00 3.41
381 382 6.914215 CGCGAACTTACTACTACATTATGGAA 59.086 38.462 0.00 0.00 0.00 3.53
382 383 7.594015 CGCGAACTTACTACTACATTATGGAAT 59.406 37.037 0.00 0.00 0.00 3.01
383 384 8.700644 GCGAACTTACTACTACATTATGGAATG 58.299 37.037 0.00 0.00 46.77 2.67
384 385 9.193133 CGAACTTACTACTACATTATGGAATGG 57.807 37.037 0.00 0.00 45.83 3.16
427 428 5.801350 TTGAGATGCTTTGTATTTCTCGG 57.199 39.130 0.00 0.00 36.46 4.63
428 429 4.191544 TGAGATGCTTTGTATTTCTCGGG 58.808 43.478 0.00 0.00 36.46 5.14
429 430 3.545703 AGATGCTTTGTATTTCTCGGGG 58.454 45.455 0.00 0.00 0.00 5.73
430 431 2.871096 TGCTTTGTATTTCTCGGGGT 57.129 45.000 0.00 0.00 0.00 4.95
431 432 3.985019 TGCTTTGTATTTCTCGGGGTA 57.015 42.857 0.00 0.00 0.00 3.69
432 433 4.289238 TGCTTTGTATTTCTCGGGGTAA 57.711 40.909 0.00 0.00 0.00 2.85
433 434 4.653868 TGCTTTGTATTTCTCGGGGTAAA 58.346 39.130 0.00 0.00 0.00 2.01
434 435 4.456566 TGCTTTGTATTTCTCGGGGTAAAC 59.543 41.667 0.00 0.00 0.00 2.01
435 436 4.142534 GCTTTGTATTTCTCGGGGTAAACC 60.143 45.833 0.00 0.00 39.11 3.27
436 437 4.914177 TTGTATTTCTCGGGGTAAACCT 57.086 40.909 0.00 0.00 40.03 3.50
438 439 6.371595 TTGTATTTCTCGGGGTAAACCTTA 57.628 37.500 0.00 0.00 40.03 2.69
440 441 7.673641 TGTATTTCTCGGGGTAAACCTTATA 57.326 36.000 0.00 0.00 40.03 0.98
441 442 7.500141 TGTATTTCTCGGGGTAAACCTTATAC 58.500 38.462 0.00 0.00 40.03 1.47
442 443 5.357742 TTTCTCGGGGTAAACCTTATACC 57.642 43.478 0.00 0.00 41.76 2.73
458 459 7.846066 ACCTTATACCATAGATCTGATGCTTC 58.154 38.462 5.18 0.00 0.00 3.86
459 460 7.455953 ACCTTATACCATAGATCTGATGCTTCA 59.544 37.037 5.18 1.92 0.00 3.02
476 477 4.936891 GCTTCAGGCAAGAAAGAAAAAGA 58.063 39.130 0.00 0.00 41.35 2.52
480 481 7.148423 GCTTCAGGCAAGAAAGAAAAAGAAAAA 60.148 33.333 0.00 0.00 41.35 1.94
485 486 6.237835 GGCAAGAAAGAAAAAGAAAAACGAGG 60.238 38.462 0.00 0.00 0.00 4.63
563 565 0.178995 GTCCCTACCTCCTAGACCGG 60.179 65.000 0.00 0.00 0.00 5.28
656 658 1.675641 AACATGCTCCAAGACGGGC 60.676 57.895 0.00 0.00 34.36 6.13
728 740 1.002792 CAGATTCGATCGCGTGGAGTA 60.003 52.381 11.09 0.00 38.98 2.59
803 826 8.624776 CCCGAGCATTTATTAATTTCTTTCTCT 58.375 33.333 0.00 0.00 0.00 3.10
863 887 1.893808 GTGCACAGTGGGTCAGTGG 60.894 63.158 13.17 0.00 38.94 4.00
1276 1310 1.384222 GGCGGAGTTTGGGCTAATGG 61.384 60.000 0.00 0.00 0.00 3.16
1280 1314 1.285078 GGAGTTTGGGCTAATGGGAGT 59.715 52.381 0.00 0.00 0.00 3.85
1308 1342 2.695359 GGAGGCTCACGAATTGTTACA 58.305 47.619 17.69 0.00 0.00 2.41
1385 1419 1.138036 CGGCGTCGGTGATCTGTTA 59.862 57.895 0.00 0.00 0.00 2.41
1407 1441 0.912528 GTGTTCGATTCGGCGTAGTC 59.087 55.000 6.85 2.79 0.00 2.59
1533 1579 3.805108 GCCTGTATGCATCTAGACTTGGG 60.805 52.174 0.19 1.79 0.00 4.12
1599 1645 9.614792 AAATCCACAACATTCTATAGAAGTACC 57.385 33.333 19.51 0.00 37.48 3.34
1677 1724 7.712797 CCATAAGTGGTGTTTAAGTTTGAGTT 58.287 34.615 0.00 0.00 40.83 3.01
1708 1755 4.557205 ACTCACTTCCAGATGTACGAAAC 58.443 43.478 0.00 0.00 0.00 2.78
1709 1756 3.571571 TCACTTCCAGATGTACGAAACG 58.428 45.455 0.00 0.00 0.00 3.60
1727 1774 1.825474 ACGCACCATTACTCTGTAGCT 59.175 47.619 0.00 0.00 0.00 3.32
1794 1841 8.178313 CAGTGCTAGTTTTCCTATTTTTAGCTC 58.822 37.037 0.00 0.00 34.62 4.09
1796 1843 6.877322 TGCTAGTTTTCCTATTTTTAGCTCGT 59.123 34.615 0.00 0.00 34.62 4.18
1819 1866 6.563381 CGTCACAGTTTTATTATATCCACGGC 60.563 42.308 0.00 0.00 0.00 5.68
2238 2310 3.511934 ACTCTAGATTGGTCCATATCGGC 59.488 47.826 0.00 0.00 33.14 5.54
2384 2459 3.525800 AGTTGCAAGGGGACAAGTTAT 57.474 42.857 0.00 0.00 0.00 1.89
2501 2578 2.295349 ACTGTTGAAATCTTGCTGCCAG 59.705 45.455 0.00 0.00 0.00 4.85
2653 2745 7.094848 TGCATGTTGAATTATATACCATGACCG 60.095 37.037 0.00 0.00 0.00 4.79
2675 2767 2.092103 AGTTTTTGGGTGACAGCTGGTA 60.092 45.455 19.93 3.01 0.00 3.25
2804 2896 3.903090 ACCCAATCAATTTTCTCCAGCAA 59.097 39.130 0.00 0.00 0.00 3.91
2805 3063 4.347583 ACCCAATCAATTTTCTCCAGCAAA 59.652 37.500 0.00 0.00 0.00 3.68
3094 3518 5.823861 AATAAAGAAAAATGCCCCACAGT 57.176 34.783 0.00 0.00 0.00 3.55
3148 3572 2.824341 TCTTTCTCCCGTCTGTCCTAAC 59.176 50.000 0.00 0.00 0.00 2.34
3396 3829 3.129462 TCGGTTCAATGCACAGTTTTCAA 59.871 39.130 0.00 0.00 0.00 2.69
3450 3883 7.924541 TGTTTTGAGTATTCTTATACACCCCT 58.075 34.615 0.00 0.00 39.30 4.79
3483 3916 1.702401 TCACACTGCCCATTACAGGAA 59.298 47.619 0.00 0.00 39.55 3.36
3505 3993 6.262273 GGAACTACAAATCTGGTCACTGAAAA 59.738 38.462 0.00 0.00 0.00 2.29
3866 4376 2.307496 ATGGAATTGTGTTGCCCTCA 57.693 45.000 0.00 0.00 0.00 3.86
4555 5105 2.675317 CGGTGCCTTTTTGTTTTGACCA 60.675 45.455 0.00 0.00 0.00 4.02
4682 5233 2.498167 GTGTCTGTCAGGCTGTGAAAT 58.502 47.619 15.27 0.00 36.74 2.17
4692 5243 4.761739 TCAGGCTGTGAAATCTTAAACCTG 59.238 41.667 15.27 0.00 42.79 4.00
4826 5381 0.865111 TCGCATGTTTGGTGTCTTCG 59.135 50.000 0.00 0.00 0.00 3.79
4852 5407 5.337813 GGTTTGCCTGAGATTGGATTTTCAT 60.338 40.000 0.00 0.00 0.00 2.57
4885 5454 2.854185 GCGCTACAAAATTCATGGCTTC 59.146 45.455 0.00 0.00 0.00 3.86
4908 5477 9.989869 CTTCTATAGTTGGTTTTAGCTTTTAGC 57.010 33.333 0.00 0.00 42.84 3.09
4980 5573 1.483415 TGATTCAGGCCGGTACCTAAC 59.517 52.381 10.90 0.00 38.26 2.34
5008 5601 1.328680 CCGCAAATTCGACCATCTCAG 59.671 52.381 0.00 0.00 0.00 3.35
5026 5620 7.859377 CCATCTCAGCAAATGTAAATATGTGAC 59.141 37.037 0.00 0.00 0.00 3.67
5039 5648 2.183478 ATGTGACTGTCAAATGCCGA 57.817 45.000 12.58 0.00 0.00 5.54
5115 5726 2.572191 AGCCATTCATCATTTGCACG 57.428 45.000 0.00 0.00 0.00 5.34
5145 5756 3.332919 AGCTTTGATATATCTGCCGCTG 58.667 45.455 13.79 0.00 0.00 5.18
5195 5806 1.742268 GGTTCTTCTGCATCCTGAAGC 59.258 52.381 8.23 6.86 43.05 3.86
5219 5830 6.317391 GCTGAGAAAAACCAAGATGCTAGTAT 59.683 38.462 0.00 0.00 0.00 2.12
5222 5833 7.550551 TGAGAAAAACCAAGATGCTAGTATGAG 59.449 37.037 0.00 0.00 0.00 2.90
5243 5854 2.415512 GCAACGGTGTCTTATTCAGGAC 59.584 50.000 0.66 0.00 0.00 3.85
5249 5860 4.083484 CGGTGTCTTATTCAGGACAAAACC 60.083 45.833 0.00 0.00 42.88 3.27
5251 5862 5.300792 GGTGTCTTATTCAGGACAAAACCAA 59.699 40.000 0.00 0.00 42.88 3.67
5253 5864 5.534654 TGTCTTATTCAGGACAAAACCAAGG 59.465 40.000 0.00 0.00 39.16 3.61
5255 5866 6.264518 GTCTTATTCAGGACAAAACCAAGGAA 59.735 38.462 0.00 0.00 33.19 3.36
5256 5867 4.937201 ATTCAGGACAAAACCAAGGAAC 57.063 40.909 0.00 0.00 0.00 3.62
5257 5868 2.661718 TCAGGACAAAACCAAGGAACC 58.338 47.619 0.00 0.00 0.00 3.62
5258 5869 1.336755 CAGGACAAAACCAAGGAACCG 59.663 52.381 0.00 0.00 0.00 4.44
5259 5870 0.671796 GGACAAAACCAAGGAACCGG 59.328 55.000 0.00 0.00 0.00 5.28
5260 5871 1.395635 GACAAAACCAAGGAACCGGT 58.604 50.000 0.00 0.00 36.04 5.28
5261 5872 1.752498 GACAAAACCAAGGAACCGGTT 59.248 47.619 22.50 22.50 45.09 4.44
5267 5878 2.799017 ACCAAGGAACCGGTTTTATCC 58.201 47.619 23.22 18.24 29.51 2.59
5268 5879 2.108601 ACCAAGGAACCGGTTTTATCCA 59.891 45.455 23.22 0.00 34.30 3.41
5269 5880 3.245479 ACCAAGGAACCGGTTTTATCCAT 60.245 43.478 23.22 8.23 34.30 3.41
5270 5881 4.018233 ACCAAGGAACCGGTTTTATCCATA 60.018 41.667 23.22 0.00 34.30 2.74
5271 5882 4.951094 CCAAGGAACCGGTTTTATCCATAA 59.049 41.667 23.22 0.00 34.30 1.90
5272 5883 5.596772 CCAAGGAACCGGTTTTATCCATAAT 59.403 40.000 23.22 3.28 34.30 1.28
5273 5884 6.460953 CCAAGGAACCGGTTTTATCCATAATG 60.461 42.308 23.22 14.33 34.30 1.90
5274 5885 6.008696 AGGAACCGGTTTTATCCATAATGA 57.991 37.500 23.22 0.00 34.30 2.57
5275 5886 6.428295 AGGAACCGGTTTTATCCATAATGAA 58.572 36.000 23.22 0.00 34.30 2.57
5276 5887 7.066781 AGGAACCGGTTTTATCCATAATGAAT 58.933 34.615 23.22 0.00 34.30 2.57
5277 5888 7.563556 AGGAACCGGTTTTATCCATAATGAATT 59.436 33.333 23.22 0.00 34.30 2.17
5278 5889 8.852135 GGAACCGGTTTTATCCATAATGAATTA 58.148 33.333 23.22 0.00 32.08 1.40
5290 5901 9.604569 ATCCATAATGAATTAATGATGACCCAA 57.395 29.630 1.84 0.00 0.00 4.12
5291 5902 8.859090 TCCATAATGAATTAATGATGACCCAAC 58.141 33.333 1.84 0.00 0.00 3.77
5292 5903 8.863086 CCATAATGAATTAATGATGACCCAACT 58.137 33.333 1.84 0.00 0.00 3.16
5293 5904 9.687210 CATAATGAATTAATGATGACCCAACTG 57.313 33.333 0.00 0.00 0.00 3.16
5294 5905 7.959658 AATGAATTAATGATGACCCAACTGA 57.040 32.000 0.00 0.00 0.00 3.41
5295 5906 6.757897 TGAATTAATGATGACCCAACTGAC 57.242 37.500 0.00 0.00 0.00 3.51
5296 5907 6.244654 TGAATTAATGATGACCCAACTGACA 58.755 36.000 0.00 0.00 0.00 3.58
5297 5908 6.718912 TGAATTAATGATGACCCAACTGACAA 59.281 34.615 0.00 0.00 0.00 3.18
5298 5909 5.957842 TTAATGATGACCCAACTGACAAC 57.042 39.130 0.00 0.00 0.00 3.32
5299 5910 3.795688 ATGATGACCCAACTGACAACT 57.204 42.857 0.00 0.00 0.00 3.16
5300 5911 4.908601 ATGATGACCCAACTGACAACTA 57.091 40.909 0.00 0.00 0.00 2.24
5301 5912 4.271696 TGATGACCCAACTGACAACTAG 57.728 45.455 0.00 0.00 0.00 2.57
5302 5913 3.007940 TGATGACCCAACTGACAACTAGG 59.992 47.826 0.00 0.00 0.00 3.02
5303 5914 2.684943 TGACCCAACTGACAACTAGGA 58.315 47.619 0.00 0.00 0.00 2.94
5304 5915 2.632996 TGACCCAACTGACAACTAGGAG 59.367 50.000 0.00 0.00 0.00 3.69
5305 5916 1.978580 ACCCAACTGACAACTAGGAGG 59.021 52.381 0.00 0.00 0.00 4.30
5306 5917 1.978580 CCCAACTGACAACTAGGAGGT 59.021 52.381 0.00 0.00 0.00 3.85
5307 5918 3.170717 CCCAACTGACAACTAGGAGGTA 58.829 50.000 0.00 0.00 0.00 3.08
5308 5919 3.056035 CCCAACTGACAACTAGGAGGTAC 60.056 52.174 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.058160 CAGTTGGCGCCCTCAAGG 61.058 66.667 26.77 4.60 39.47 3.61
6 7 3.741476 GCAGTTGGCGCCCTCAAG 61.741 66.667 26.77 11.38 0.00 3.02
15 16 2.554032 AGTGAATGTTGTAGCAGTTGGC 59.446 45.455 0.00 0.00 45.30 4.52
16 17 4.836125 AAGTGAATGTTGTAGCAGTTGG 57.164 40.909 0.00 0.00 0.00 3.77
17 18 6.545504 ACTAAGTGAATGTTGTAGCAGTTG 57.454 37.500 0.00 0.00 0.00 3.16
18 19 5.405571 CGACTAAGTGAATGTTGTAGCAGTT 59.594 40.000 0.00 0.00 0.00 3.16
19 20 4.923871 CGACTAAGTGAATGTTGTAGCAGT 59.076 41.667 0.00 0.00 0.00 4.40
20 21 5.161358 TCGACTAAGTGAATGTTGTAGCAG 58.839 41.667 0.00 0.00 0.00 4.24
21 22 5.128992 TCGACTAAGTGAATGTTGTAGCA 57.871 39.130 0.00 0.00 0.00 3.49
22 23 4.563184 CCTCGACTAAGTGAATGTTGTAGC 59.437 45.833 0.00 0.00 0.00 3.58
23 24 5.950883 TCCTCGACTAAGTGAATGTTGTAG 58.049 41.667 0.00 0.00 0.00 2.74
24 25 5.970317 TCCTCGACTAAGTGAATGTTGTA 57.030 39.130 0.00 0.00 0.00 2.41
25 26 4.866508 TCCTCGACTAAGTGAATGTTGT 57.133 40.909 0.00 0.00 0.00 3.32
26 27 5.410924 TCATCCTCGACTAAGTGAATGTTG 58.589 41.667 0.00 0.00 0.00 3.33
27 28 5.661056 TCATCCTCGACTAAGTGAATGTT 57.339 39.130 0.00 0.00 0.00 2.71
28 29 5.360999 TCATCATCCTCGACTAAGTGAATGT 59.639 40.000 0.00 0.00 0.00 2.71
29 30 5.836347 TCATCATCCTCGACTAAGTGAATG 58.164 41.667 0.00 0.00 0.00 2.67
30 31 6.662865 ATCATCATCCTCGACTAAGTGAAT 57.337 37.500 0.00 0.00 0.00 2.57
31 32 7.582667 TTATCATCATCCTCGACTAAGTGAA 57.417 36.000 0.00 0.00 0.00 3.18
32 33 7.448469 TCATTATCATCATCCTCGACTAAGTGA 59.552 37.037 0.00 0.00 0.00 3.41
33 34 7.597386 TCATTATCATCATCCTCGACTAAGTG 58.403 38.462 0.00 0.00 0.00 3.16
34 35 7.767250 TCATTATCATCATCCTCGACTAAGT 57.233 36.000 0.00 0.00 0.00 2.24
35 36 8.518702 TCTTCATTATCATCATCCTCGACTAAG 58.481 37.037 0.00 0.00 0.00 2.18
36 37 8.300286 GTCTTCATTATCATCATCCTCGACTAA 58.700 37.037 0.00 0.00 0.00 2.24
37 38 7.094162 GGTCTTCATTATCATCATCCTCGACTA 60.094 40.741 0.00 0.00 0.00 2.59
38 39 6.295011 GGTCTTCATTATCATCATCCTCGACT 60.295 42.308 0.00 0.00 0.00 4.18
39 40 5.866633 GGTCTTCATTATCATCATCCTCGAC 59.133 44.000 0.00 0.00 0.00 4.20
40 41 5.777223 AGGTCTTCATTATCATCATCCTCGA 59.223 40.000 0.00 0.00 0.00 4.04
41 42 6.035368 AGGTCTTCATTATCATCATCCTCG 57.965 41.667 0.00 0.00 0.00 4.63
42 43 7.002250 TGAGGTCTTCATTATCATCATCCTC 57.998 40.000 0.00 0.00 38.41 3.71
43 44 7.571071 ATGAGGTCTTCATTATCATCATCCT 57.429 36.000 0.00 0.00 44.14 3.24
56 57 5.874810 CCGATTAACTTCAATGAGGTCTTCA 59.125 40.000 0.00 0.00 40.85 3.02
57 58 5.294552 CCCGATTAACTTCAATGAGGTCTTC 59.705 44.000 0.00 0.00 0.00 2.87
58 59 5.045869 TCCCGATTAACTTCAATGAGGTCTT 60.046 40.000 0.00 0.00 0.00 3.01
59 60 4.469945 TCCCGATTAACTTCAATGAGGTCT 59.530 41.667 0.00 0.00 0.00 3.85
60 61 4.766375 TCCCGATTAACTTCAATGAGGTC 58.234 43.478 0.00 0.00 0.00 3.85
61 62 4.837093 TCCCGATTAACTTCAATGAGGT 57.163 40.909 0.00 0.00 0.00 3.85
62 63 7.801716 TTTATCCCGATTAACTTCAATGAGG 57.198 36.000 0.00 0.00 0.00 3.86
63 64 8.840321 ACATTTATCCCGATTAACTTCAATGAG 58.160 33.333 0.00 0.00 0.00 2.90
64 65 8.746052 ACATTTATCCCGATTAACTTCAATGA 57.254 30.769 0.00 0.00 0.00 2.57
72 73 9.939802 ACTCCTAATACATTTATCCCGATTAAC 57.060 33.333 0.00 0.00 0.00 2.01
75 76 8.759782 CCTACTCCTAATACATTTATCCCGATT 58.240 37.037 0.00 0.00 0.00 3.34
76 77 7.344871 CCCTACTCCTAATACATTTATCCCGAT 59.655 40.741 0.00 0.00 0.00 4.18
77 78 6.666546 CCCTACTCCTAATACATTTATCCCGA 59.333 42.308 0.00 0.00 0.00 5.14
78 79 6.127140 CCCCTACTCCTAATACATTTATCCCG 60.127 46.154 0.00 0.00 0.00 5.14
79 80 6.734281 ACCCCTACTCCTAATACATTTATCCC 59.266 42.308 0.00 0.00 0.00 3.85
80 81 7.809880 ACCCCTACTCCTAATACATTTATCC 57.190 40.000 0.00 0.00 0.00 2.59
81 82 8.657712 ACAACCCCTACTCCTAATACATTTATC 58.342 37.037 0.00 0.00 0.00 1.75
82 83 8.437575 CACAACCCCTACTCCTAATACATTTAT 58.562 37.037 0.00 0.00 0.00 1.40
83 84 7.636413 GCACAACCCCTACTCCTAATACATTTA 60.636 40.741 0.00 0.00 0.00 1.40
84 85 6.659824 CACAACCCCTACTCCTAATACATTT 58.340 40.000 0.00 0.00 0.00 2.32
85 86 5.397559 GCACAACCCCTACTCCTAATACATT 60.398 44.000 0.00 0.00 0.00 2.71
86 87 4.102681 GCACAACCCCTACTCCTAATACAT 59.897 45.833 0.00 0.00 0.00 2.29
87 88 3.453353 GCACAACCCCTACTCCTAATACA 59.547 47.826 0.00 0.00 0.00 2.29
88 89 3.453353 TGCACAACCCCTACTCCTAATAC 59.547 47.826 0.00 0.00 0.00 1.89
89 90 3.453353 GTGCACAACCCCTACTCCTAATA 59.547 47.826 13.17 0.00 0.00 0.98
90 91 2.238898 GTGCACAACCCCTACTCCTAAT 59.761 50.000 13.17 0.00 0.00 1.73
91 92 1.626825 GTGCACAACCCCTACTCCTAA 59.373 52.381 13.17 0.00 0.00 2.69
92 93 1.203262 AGTGCACAACCCCTACTCCTA 60.203 52.381 21.04 0.00 0.00 2.94
93 94 0.473886 AGTGCACAACCCCTACTCCT 60.474 55.000 21.04 0.00 0.00 3.69
94 95 0.400594 AAGTGCACAACCCCTACTCC 59.599 55.000 21.04 0.00 0.00 3.85
95 96 1.071699 TCAAGTGCACAACCCCTACTC 59.928 52.381 21.04 0.00 0.00 2.59
96 97 1.136828 TCAAGTGCACAACCCCTACT 58.863 50.000 21.04 0.00 0.00 2.57
97 98 1.812571 CATCAAGTGCACAACCCCTAC 59.187 52.381 21.04 0.00 0.00 3.18
98 99 1.702401 TCATCAAGTGCACAACCCCTA 59.298 47.619 21.04 0.00 0.00 3.53
99 100 0.478072 TCATCAAGTGCACAACCCCT 59.522 50.000 21.04 0.00 0.00 4.79
100 101 0.598065 GTCATCAAGTGCACAACCCC 59.402 55.000 21.04 0.00 0.00 4.95
101 102 1.317613 TGTCATCAAGTGCACAACCC 58.682 50.000 21.04 0.32 0.00 4.11
102 103 2.731217 GTTGTCATCAAGTGCACAACC 58.269 47.619 21.04 0.00 39.83 3.77
103 104 2.098934 TGGTTGTCATCAAGTGCACAAC 59.901 45.455 21.04 11.53 42.10 3.32
104 105 2.373224 TGGTTGTCATCAAGTGCACAA 58.627 42.857 21.04 4.16 33.97 3.33
105 106 2.049888 TGGTTGTCATCAAGTGCACA 57.950 45.000 21.04 0.00 33.97 4.57
115 116 5.977635 TCGTCTTATGAAGATGGTTGTCAT 58.022 37.500 8.24 0.00 43.28 3.06
116 117 5.185056 TCTCGTCTTATGAAGATGGTTGTCA 59.815 40.000 8.24 0.00 43.28 3.58
117 118 5.651530 TCTCGTCTTATGAAGATGGTTGTC 58.348 41.667 8.24 0.00 43.28 3.18
118 119 5.661056 TCTCGTCTTATGAAGATGGTTGT 57.339 39.130 8.24 0.00 43.28 3.32
119 120 7.383572 CCTTATCTCGTCTTATGAAGATGGTTG 59.616 40.741 8.24 1.50 43.28 3.77
120 121 7.070074 ACCTTATCTCGTCTTATGAAGATGGTT 59.930 37.037 8.24 0.00 43.28 3.67
121 122 6.551601 ACCTTATCTCGTCTTATGAAGATGGT 59.448 38.462 8.24 1.93 43.28 3.55
122 123 6.987386 ACCTTATCTCGTCTTATGAAGATGG 58.013 40.000 8.24 1.24 43.28 3.51
125 126 9.788889 TGTATACCTTATCTCGTCTTATGAAGA 57.211 33.333 0.00 0.00 34.51 2.87
126 127 9.828852 GTGTATACCTTATCTCGTCTTATGAAG 57.171 37.037 0.00 0.00 0.00 3.02
127 128 9.346005 TGTGTATACCTTATCTCGTCTTATGAA 57.654 33.333 0.00 0.00 0.00 2.57
128 129 8.913487 TGTGTATACCTTATCTCGTCTTATGA 57.087 34.615 0.00 0.00 0.00 2.15
129 130 9.613957 CTTGTGTATACCTTATCTCGTCTTATG 57.386 37.037 0.00 0.00 0.00 1.90
130 131 9.570468 TCTTGTGTATACCTTATCTCGTCTTAT 57.430 33.333 0.00 0.00 0.00 1.73
131 132 8.969260 TCTTGTGTATACCTTATCTCGTCTTA 57.031 34.615 0.00 0.00 0.00 2.10
132 133 7.876936 TCTTGTGTATACCTTATCTCGTCTT 57.123 36.000 0.00 0.00 0.00 3.01
133 134 9.570468 TTATCTTGTGTATACCTTATCTCGTCT 57.430 33.333 0.00 0.00 0.00 4.18
142 143 9.959721 ATGACACTTTTATCTTGTGTATACCTT 57.040 29.630 0.00 0.00 43.81 3.50
143 144 9.601217 GATGACACTTTTATCTTGTGTATACCT 57.399 33.333 0.00 0.00 43.81 3.08
144 145 8.540492 CGATGACACTTTTATCTTGTGTATACC 58.460 37.037 0.00 0.00 43.81 2.73
145 146 9.297586 TCGATGACACTTTTATCTTGTGTATAC 57.702 33.333 0.00 0.00 43.81 1.47
146 147 9.297586 GTCGATGACACTTTTATCTTGTGTATA 57.702 33.333 0.00 0.00 43.81 1.47
147 148 7.817478 TGTCGATGACACTTTTATCTTGTGTAT 59.183 33.333 0.00 0.00 43.81 2.29
148 149 7.149307 TGTCGATGACACTTTTATCTTGTGTA 58.851 34.615 0.00 0.00 43.81 2.90
149 150 5.989168 TGTCGATGACACTTTTATCTTGTGT 59.011 36.000 0.00 0.00 46.03 3.72
150 151 6.466308 TGTCGATGACACTTTTATCTTGTG 57.534 37.500 0.00 0.00 37.67 3.33
151 152 6.147821 CCTTGTCGATGACACTTTTATCTTGT 59.852 38.462 0.00 0.00 42.60 3.16
152 153 6.537566 CCTTGTCGATGACACTTTTATCTTG 58.462 40.000 0.00 0.00 42.60 3.02
153 154 5.122396 GCCTTGTCGATGACACTTTTATCTT 59.878 40.000 0.00 0.00 42.60 2.40
154 155 4.631813 GCCTTGTCGATGACACTTTTATCT 59.368 41.667 0.00 0.00 42.60 1.98
155 156 4.201822 GGCCTTGTCGATGACACTTTTATC 60.202 45.833 0.00 0.00 42.60 1.75
156 157 3.689649 GGCCTTGTCGATGACACTTTTAT 59.310 43.478 0.00 0.00 42.60 1.40
157 158 3.071479 GGCCTTGTCGATGACACTTTTA 58.929 45.455 0.00 0.00 42.60 1.52
158 159 1.880027 GGCCTTGTCGATGACACTTTT 59.120 47.619 0.00 0.00 42.60 2.27
159 160 1.523758 GGCCTTGTCGATGACACTTT 58.476 50.000 0.00 0.00 42.60 2.66
160 161 0.670546 CGGCCTTGTCGATGACACTT 60.671 55.000 0.00 0.00 42.60 3.16
161 162 1.079819 CGGCCTTGTCGATGACACT 60.080 57.895 0.00 0.00 42.60 3.55
162 163 0.669318 TTCGGCCTTGTCGATGACAC 60.669 55.000 0.00 0.00 42.60 3.67
163 164 0.669318 GTTCGGCCTTGTCGATGACA 60.669 55.000 0.00 0.00 40.05 3.58
164 165 0.669318 TGTTCGGCCTTGTCGATGAC 60.669 55.000 0.00 0.00 40.05 3.06
165 166 0.389817 CTGTTCGGCCTTGTCGATGA 60.390 55.000 0.00 0.00 40.05 2.92
166 167 1.970917 GCTGTTCGGCCTTGTCGATG 61.971 60.000 0.00 0.00 40.05 3.84
167 168 1.741770 GCTGTTCGGCCTTGTCGAT 60.742 57.895 0.00 0.00 40.05 3.59
168 169 2.357034 GCTGTTCGGCCTTGTCGA 60.357 61.111 0.00 0.00 38.09 4.20
169 170 3.777925 CGCTGTTCGGCCTTGTCG 61.778 66.667 0.00 0.00 33.78 4.35
170 171 1.741770 ATCGCTGTTCGGCCTTGTC 60.742 57.895 0.00 0.00 39.05 3.18
171 172 2.034879 CATCGCTGTTCGGCCTTGT 61.035 57.895 0.00 0.00 39.05 3.16
172 173 2.787249 CATCGCTGTTCGGCCTTG 59.213 61.111 0.00 0.00 39.05 3.61
173 174 3.127533 GCATCGCTGTTCGGCCTT 61.128 61.111 0.00 0.00 39.05 4.35
176 177 4.210304 GACGCATCGCTGTTCGGC 62.210 66.667 0.00 0.00 39.05 5.54
177 178 3.902063 CGACGCATCGCTGTTCGG 61.902 66.667 0.00 0.00 42.43 4.30
186 187 4.796231 ACAGGCCGTCGACGCATC 62.796 66.667 31.73 21.11 38.18 3.91
187 188 4.373116 AACAGGCCGTCGACGCAT 62.373 61.111 31.73 21.21 38.18 4.73
189 190 4.719369 AGAACAGGCCGTCGACGC 62.719 66.667 31.73 24.83 38.18 5.19
190 191 2.805353 CAGAACAGGCCGTCGACG 60.805 66.667 30.33 30.33 39.44 5.12
191 192 2.432628 CCAGAACAGGCCGTCGAC 60.433 66.667 5.18 5.18 0.00 4.20
199 200 3.197790 CCGATGCGCCAGAACAGG 61.198 66.667 4.18 0.00 0.00 4.00
200 201 2.434884 ACCGATGCGCCAGAACAG 60.435 61.111 4.18 0.00 0.00 3.16
201 202 2.741985 CACCGATGCGCCAGAACA 60.742 61.111 4.18 0.00 0.00 3.18
202 203 2.240612 GAACACCGATGCGCCAGAAC 62.241 60.000 4.18 0.00 0.00 3.01
203 204 2.031919 AACACCGATGCGCCAGAA 59.968 55.556 4.18 0.00 0.00 3.02
204 205 2.434185 GAACACCGATGCGCCAGA 60.434 61.111 4.18 0.00 0.00 3.86
205 206 3.853330 CGAACACCGATGCGCCAG 61.853 66.667 4.18 0.00 41.76 4.85
206 207 4.673298 ACGAACACCGATGCGCCA 62.673 61.111 4.18 0.00 41.76 5.69
207 208 3.362851 GAACGAACACCGATGCGCC 62.363 63.158 4.18 0.00 41.76 6.53
208 209 2.095843 GAACGAACACCGATGCGC 59.904 61.111 0.00 0.00 41.76 6.09
209 210 2.390288 CGAACGAACACCGATGCG 59.610 61.111 0.00 0.00 41.76 4.73
210 211 2.025418 ACCGAACGAACACCGATGC 61.025 57.895 0.00 0.00 41.76 3.91
211 212 1.623081 CCACCGAACGAACACCGATG 61.623 60.000 0.00 0.00 41.76 3.84
212 213 1.373748 CCACCGAACGAACACCGAT 60.374 57.895 0.00 0.00 41.76 4.18
213 214 2.027897 CCACCGAACGAACACCGA 59.972 61.111 0.00 0.00 41.76 4.69
214 215 2.279650 ACCACCGAACGAACACCG 60.280 61.111 0.00 0.00 45.44 4.94
215 216 0.942884 GAGACCACCGAACGAACACC 60.943 60.000 0.00 0.00 0.00 4.16
216 217 0.249155 TGAGACCACCGAACGAACAC 60.249 55.000 0.00 0.00 0.00 3.32
217 218 0.031585 CTGAGACCACCGAACGAACA 59.968 55.000 0.00 0.00 0.00 3.18
218 219 0.313043 TCTGAGACCACCGAACGAAC 59.687 55.000 0.00 0.00 0.00 3.95
219 220 1.034356 TTCTGAGACCACCGAACGAA 58.966 50.000 0.00 0.00 0.00 3.85
220 221 1.201647 GATTCTGAGACCACCGAACGA 59.798 52.381 0.00 0.00 0.00 3.85
221 222 1.202582 AGATTCTGAGACCACCGAACG 59.797 52.381 0.00 0.00 0.00 3.95
222 223 2.996621 CAAGATTCTGAGACCACCGAAC 59.003 50.000 0.00 0.00 0.00 3.95
223 224 2.897326 TCAAGATTCTGAGACCACCGAA 59.103 45.455 0.00 0.00 0.00 4.30
224 225 2.231478 GTCAAGATTCTGAGACCACCGA 59.769 50.000 7.84 0.00 0.00 4.69
225 226 2.029020 TGTCAAGATTCTGAGACCACCG 60.029 50.000 13.78 0.00 0.00 4.94
226 227 3.685139 TGTCAAGATTCTGAGACCACC 57.315 47.619 13.78 0.00 0.00 4.61
227 228 5.971763 AGTATGTCAAGATTCTGAGACCAC 58.028 41.667 13.78 11.89 0.00 4.16
228 229 5.127845 GGAGTATGTCAAGATTCTGAGACCA 59.872 44.000 13.78 5.94 0.00 4.02
229 230 5.452636 GGGAGTATGTCAAGATTCTGAGACC 60.453 48.000 13.78 0.00 0.00 3.85
230 231 5.362430 AGGGAGTATGTCAAGATTCTGAGAC 59.638 44.000 10.88 10.88 0.00 3.36
231 232 5.523588 AGGGAGTATGTCAAGATTCTGAGA 58.476 41.667 0.00 0.00 0.00 3.27
232 233 5.221422 GGAGGGAGTATGTCAAGATTCTGAG 60.221 48.000 0.00 0.00 0.00 3.35
233 234 4.651503 GGAGGGAGTATGTCAAGATTCTGA 59.348 45.833 0.00 0.00 0.00 3.27
234 235 4.406972 TGGAGGGAGTATGTCAAGATTCTG 59.593 45.833 0.00 0.00 0.00 3.02
235 236 4.407296 GTGGAGGGAGTATGTCAAGATTCT 59.593 45.833 0.00 0.00 0.00 2.40
236 237 4.407296 AGTGGAGGGAGTATGTCAAGATTC 59.593 45.833 0.00 0.00 0.00 2.52
237 238 4.366267 AGTGGAGGGAGTATGTCAAGATT 58.634 43.478 0.00 0.00 0.00 2.40
238 239 3.964031 GAGTGGAGGGAGTATGTCAAGAT 59.036 47.826 0.00 0.00 0.00 2.40
239 240 3.366396 GAGTGGAGGGAGTATGTCAAGA 58.634 50.000 0.00 0.00 0.00 3.02
240 241 2.432510 GGAGTGGAGGGAGTATGTCAAG 59.567 54.545 0.00 0.00 0.00 3.02
241 242 2.225522 TGGAGTGGAGGGAGTATGTCAA 60.226 50.000 0.00 0.00 0.00 3.18
242 243 1.361197 TGGAGTGGAGGGAGTATGTCA 59.639 52.381 0.00 0.00 0.00 3.58
243 244 1.757699 GTGGAGTGGAGGGAGTATGTC 59.242 57.143 0.00 0.00 0.00 3.06
244 245 1.078823 TGTGGAGTGGAGGGAGTATGT 59.921 52.381 0.00 0.00 0.00 2.29
245 246 1.866015 TGTGGAGTGGAGGGAGTATG 58.134 55.000 0.00 0.00 0.00 2.39
246 247 2.642171 TTGTGGAGTGGAGGGAGTAT 57.358 50.000 0.00 0.00 0.00 2.12
247 248 2.642171 ATTGTGGAGTGGAGGGAGTA 57.358 50.000 0.00 0.00 0.00 2.59
248 249 2.642171 TATTGTGGAGTGGAGGGAGT 57.358 50.000 0.00 0.00 0.00 3.85
249 250 2.036475 CGATATTGTGGAGTGGAGGGAG 59.964 54.545 0.00 0.00 0.00 4.30
250 251 2.039418 CGATATTGTGGAGTGGAGGGA 58.961 52.381 0.00 0.00 0.00 4.20
251 252 2.039418 TCGATATTGTGGAGTGGAGGG 58.961 52.381 0.00 0.00 0.00 4.30
252 253 3.819564 TTCGATATTGTGGAGTGGAGG 57.180 47.619 0.00 0.00 0.00 4.30
253 254 6.691508 TCATATTCGATATTGTGGAGTGGAG 58.308 40.000 0.00 0.00 0.00 3.86
254 255 6.664428 TCATATTCGATATTGTGGAGTGGA 57.336 37.500 0.00 0.00 0.00 4.02
255 256 6.931281 AGTTCATATTCGATATTGTGGAGTGG 59.069 38.462 0.00 0.00 0.00 4.00
256 257 7.653311 TGAGTTCATATTCGATATTGTGGAGTG 59.347 37.037 0.00 0.00 0.00 3.51
257 258 7.726216 TGAGTTCATATTCGATATTGTGGAGT 58.274 34.615 0.00 0.00 0.00 3.85
258 259 7.869937 ACTGAGTTCATATTCGATATTGTGGAG 59.130 37.037 0.00 0.00 0.00 3.86
259 260 7.653311 CACTGAGTTCATATTCGATATTGTGGA 59.347 37.037 0.00 0.00 0.00 4.02
260 261 7.095481 CCACTGAGTTCATATTCGATATTGTGG 60.095 40.741 0.00 0.00 33.11 4.17
261 262 7.439356 ACCACTGAGTTCATATTCGATATTGTG 59.561 37.037 0.00 0.00 0.00 3.33
262 263 7.500992 ACCACTGAGTTCATATTCGATATTGT 58.499 34.615 0.00 0.00 0.00 2.71
263 264 7.953158 ACCACTGAGTTCATATTCGATATTG 57.047 36.000 0.00 0.00 0.00 1.90
273 274 9.461312 AGCAAAAATTATACCACTGAGTTCATA 57.539 29.630 0.00 0.00 0.00 2.15
274 275 8.353423 AGCAAAAATTATACCACTGAGTTCAT 57.647 30.769 0.00 0.00 0.00 2.57
275 276 7.094377 GGAGCAAAAATTATACCACTGAGTTCA 60.094 37.037 0.00 0.00 0.00 3.18
276 277 7.251281 GGAGCAAAAATTATACCACTGAGTTC 58.749 38.462 0.00 0.00 0.00 3.01
277 278 6.152831 GGGAGCAAAAATTATACCACTGAGTT 59.847 38.462 0.00 0.00 0.00 3.01
278 279 5.652452 GGGAGCAAAAATTATACCACTGAGT 59.348 40.000 0.00 0.00 0.00 3.41
279 280 5.220854 CGGGAGCAAAAATTATACCACTGAG 60.221 44.000 0.00 0.00 0.00 3.35
280 281 4.638421 CGGGAGCAAAAATTATACCACTGA 59.362 41.667 0.00 0.00 0.00 3.41
281 282 4.920376 CGGGAGCAAAAATTATACCACTG 58.080 43.478 0.00 0.00 0.00 3.66
305 306 2.649331 AACCAATGAGACCGACTACG 57.351 50.000 0.00 0.00 39.43 3.51
306 307 4.325472 CGTTTAACCAATGAGACCGACTAC 59.675 45.833 0.00 0.00 0.00 2.73
307 308 4.022068 ACGTTTAACCAATGAGACCGACTA 60.022 41.667 0.00 0.00 0.00 2.59
308 309 3.243975 ACGTTTAACCAATGAGACCGACT 60.244 43.478 0.00 0.00 0.00 4.18
309 310 3.062042 ACGTTTAACCAATGAGACCGAC 58.938 45.455 0.00 0.00 0.00 4.79
310 311 3.389925 ACGTTTAACCAATGAGACCGA 57.610 42.857 0.00 0.00 0.00 4.69
311 312 4.033587 CCATACGTTTAACCAATGAGACCG 59.966 45.833 0.00 0.00 0.00 4.79
312 313 4.939439 ACCATACGTTTAACCAATGAGACC 59.061 41.667 0.00 0.00 0.00 3.85
313 314 5.640357 TGACCATACGTTTAACCAATGAGAC 59.360 40.000 0.00 0.34 0.00 3.36
314 315 5.795972 TGACCATACGTTTAACCAATGAGA 58.204 37.500 0.00 0.00 0.00 3.27
315 316 6.489127 TTGACCATACGTTTAACCAATGAG 57.511 37.500 0.00 1.04 0.00 2.90
316 317 6.879276 TTTGACCATACGTTTAACCAATGA 57.121 33.333 0.00 0.00 0.00 2.57
317 318 8.527567 AAATTTGACCATACGTTTAACCAATG 57.472 30.769 0.00 0.00 0.00 2.82
318 319 9.849166 CTAAATTTGACCATACGTTTAACCAAT 57.151 29.630 0.00 0.00 0.00 3.16
319 320 9.064706 TCTAAATTTGACCATACGTTTAACCAA 57.935 29.630 0.00 0.00 0.00 3.67
320 321 8.618702 TCTAAATTTGACCATACGTTTAACCA 57.381 30.769 0.00 0.00 0.00 3.67
321 322 9.712359 GATCTAAATTTGACCATACGTTTAACC 57.288 33.333 0.00 0.00 0.00 2.85
324 325 9.027129 CGAGATCTAAATTTGACCATACGTTTA 57.973 33.333 0.00 0.00 0.00 2.01
325 326 7.762615 TCGAGATCTAAATTTGACCATACGTTT 59.237 33.333 0.00 0.00 0.00 3.60
326 327 7.262772 TCGAGATCTAAATTTGACCATACGTT 58.737 34.615 0.00 0.00 0.00 3.99
327 328 6.802608 TCGAGATCTAAATTTGACCATACGT 58.197 36.000 0.00 0.00 0.00 3.57
328 329 7.694388 TTCGAGATCTAAATTTGACCATACG 57.306 36.000 0.00 0.00 0.00 3.06
329 330 9.922305 CTTTTCGAGATCTAAATTTGACCATAC 57.078 33.333 0.00 0.00 0.00 2.39
330 331 8.612619 GCTTTTCGAGATCTAAATTTGACCATA 58.387 33.333 0.00 0.00 0.00 2.74
331 332 7.475840 GCTTTTCGAGATCTAAATTTGACCAT 58.524 34.615 0.00 0.00 0.00 3.55
332 333 6.402118 CGCTTTTCGAGATCTAAATTTGACCA 60.402 38.462 0.00 0.00 41.67 4.02
333 334 5.960105 CGCTTTTCGAGATCTAAATTTGACC 59.040 40.000 0.00 0.00 41.67 4.02
334 335 5.449430 GCGCTTTTCGAGATCTAAATTTGAC 59.551 40.000 0.00 0.00 41.67 3.18
335 336 5.560148 GCGCTTTTCGAGATCTAAATTTGA 58.440 37.500 0.00 0.00 41.67 2.69
336 337 4.431389 CGCGCTTTTCGAGATCTAAATTTG 59.569 41.667 5.56 0.00 40.54 2.32
337 338 4.328983 TCGCGCTTTTCGAGATCTAAATTT 59.671 37.500 5.56 0.00 41.93 1.82
338 339 3.863424 TCGCGCTTTTCGAGATCTAAATT 59.137 39.130 5.56 0.00 41.93 1.82
339 340 3.444916 TCGCGCTTTTCGAGATCTAAAT 58.555 40.909 5.56 0.00 41.93 1.40
340 341 2.871133 TCGCGCTTTTCGAGATCTAAA 58.129 42.857 5.56 0.00 41.93 1.85
341 342 2.554806 TCGCGCTTTTCGAGATCTAA 57.445 45.000 5.56 0.00 41.93 2.10
342 343 2.159421 AGTTCGCGCTTTTCGAGATCTA 60.159 45.455 5.56 0.00 45.87 1.98
343 344 0.992802 GTTCGCGCTTTTCGAGATCT 59.007 50.000 5.56 0.00 45.87 2.75
344 345 0.992802 AGTTCGCGCTTTTCGAGATC 59.007 50.000 5.56 0.00 45.87 2.75
345 346 1.429463 AAGTTCGCGCTTTTCGAGAT 58.571 45.000 5.56 0.00 45.87 2.75
346 347 1.717645 GTAAGTTCGCGCTTTTCGAGA 59.282 47.619 5.56 0.00 44.98 4.04
347 348 1.719780 AGTAAGTTCGCGCTTTTCGAG 59.280 47.619 5.56 0.00 41.67 4.04
348 349 1.774639 AGTAAGTTCGCGCTTTTCGA 58.225 45.000 5.56 0.00 41.67 3.71
349 350 2.660236 AGTAGTAAGTTCGCGCTTTTCG 59.340 45.455 5.56 0.00 42.12 3.46
350 351 4.618489 TGTAGTAGTAAGTTCGCGCTTTTC 59.382 41.667 5.56 0.00 0.00 2.29
351 352 4.549458 TGTAGTAGTAAGTTCGCGCTTTT 58.451 39.130 5.56 0.00 0.00 2.27
352 353 4.164822 TGTAGTAGTAAGTTCGCGCTTT 57.835 40.909 5.56 0.00 0.00 3.51
353 354 3.837213 TGTAGTAGTAAGTTCGCGCTT 57.163 42.857 5.56 2.11 0.00 4.68
354 355 4.367386 AATGTAGTAGTAAGTTCGCGCT 57.633 40.909 5.56 0.00 0.00 5.92
355 356 5.116680 CCATAATGTAGTAGTAAGTTCGCGC 59.883 44.000 0.00 0.00 0.00 6.86
356 357 6.432936 TCCATAATGTAGTAGTAAGTTCGCG 58.567 40.000 0.00 0.00 0.00 5.87
357 358 8.700644 CATTCCATAATGTAGTAGTAAGTTCGC 58.299 37.037 0.00 0.00 38.15 4.70
358 359 9.193133 CCATTCCATAATGTAGTAGTAAGTTCG 57.807 37.037 0.00 0.00 40.84 3.95
361 362 9.656323 TCTCCATTCCATAATGTAGTAGTAAGT 57.344 33.333 0.00 0.00 40.84 2.24
364 365 9.656323 ACTTCTCCATTCCATAATGTAGTAGTA 57.344 33.333 2.61 0.00 37.67 1.82
365 366 8.554490 ACTTCTCCATTCCATAATGTAGTAGT 57.446 34.615 0.00 0.00 40.84 2.73
401 402 7.246311 CGAGAAATACAAAGCATCTCAAACAT 58.754 34.615 0.00 0.00 37.06 2.71
416 417 4.914177 AAGGTTTACCCCGAGAAATACA 57.086 40.909 0.00 0.00 36.42 2.29
417 418 6.931281 GGTATAAGGTTTACCCCGAGAAATAC 59.069 42.308 0.00 0.00 34.25 1.89
419 420 5.429435 TGGTATAAGGTTTACCCCGAGAAAT 59.571 40.000 0.00 0.00 38.69 2.17
420 421 4.782156 TGGTATAAGGTTTACCCCGAGAAA 59.218 41.667 0.00 0.00 38.69 2.52
423 424 4.968971 ATGGTATAAGGTTTACCCCGAG 57.031 45.455 0.00 0.00 38.69 4.63
424 425 5.714863 TCTATGGTATAAGGTTTACCCCGA 58.285 41.667 0.00 0.00 38.69 5.14
425 426 6.439692 AGATCTATGGTATAAGGTTTACCCCG 59.560 42.308 0.00 0.00 38.69 5.73
427 428 8.431910 TCAGATCTATGGTATAAGGTTTACCC 57.568 38.462 0.00 0.00 38.69 3.69
428 429 9.877178 CATCAGATCTATGGTATAAGGTTTACC 57.123 37.037 0.00 0.00 39.69 2.85
429 430 9.372369 GCATCAGATCTATGGTATAAGGTTTAC 57.628 37.037 0.00 0.00 0.00 2.01
430 431 9.326489 AGCATCAGATCTATGGTATAAGGTTTA 57.674 33.333 12.32 0.00 33.49 2.01
431 432 8.212259 AGCATCAGATCTATGGTATAAGGTTT 57.788 34.615 12.32 0.00 33.49 3.27
432 433 7.805083 AGCATCAGATCTATGGTATAAGGTT 57.195 36.000 12.32 0.00 33.49 3.50
433 434 7.455953 TGAAGCATCAGATCTATGGTATAAGGT 59.544 37.037 13.60 2.54 34.12 3.50
434 435 7.845037 TGAAGCATCAGATCTATGGTATAAGG 58.155 38.462 13.60 0.00 34.12 2.69
458 459 6.310224 TCGTTTTTCTTTTTCTTTCTTGCCTG 59.690 34.615 0.00 0.00 0.00 4.85
459 460 6.394809 TCGTTTTTCTTTTTCTTTCTTGCCT 58.605 32.000 0.00 0.00 0.00 4.75
460 461 6.237835 CCTCGTTTTTCTTTTTCTTTCTTGCC 60.238 38.462 0.00 0.00 0.00 4.52
461 462 6.696198 CCTCGTTTTTCTTTTTCTTTCTTGC 58.304 36.000 0.00 0.00 0.00 4.01
464 465 5.961272 TGCCTCGTTTTTCTTTTTCTTTCT 58.039 33.333 0.00 0.00 0.00 2.52
476 477 4.983671 AAAGTTTCTCTGCCTCGTTTTT 57.016 36.364 0.00 0.00 0.00 1.94
480 481 7.606456 TCAAATAATAAAGTTTCTCTGCCTCGT 59.394 33.333 0.00 0.00 0.00 4.18
511 512 0.831307 ACCGGGTAGGCATCTTCTTC 59.169 55.000 6.32 0.00 46.52 2.87
636 638 1.308069 CCCGTCTTGGAGCATGTTGG 61.308 60.000 0.00 0.00 42.00 3.77
728 740 2.024825 GCGTGGGTCTGGATCTACTCT 61.025 57.143 0.00 0.00 0.00 3.24
803 826 2.530701 GGAGGTCAGAGAAGACTGGAA 58.469 52.381 0.00 0.00 38.57 3.53
1222 1256 2.434134 CGACGAACGCCGAGGAAAG 61.434 63.158 4.79 0.00 41.76 2.62
1276 1310 0.179070 GAGCCTCCGAATTCCACTCC 60.179 60.000 0.00 0.00 0.00 3.85
1280 1314 1.218047 CGTGAGCCTCCGAATTCCA 59.782 57.895 0.00 0.00 0.00 3.53
1308 1342 3.056465 GCTCACTTCCAGCAAGTAGTAGT 60.056 47.826 0.00 0.00 44.14 2.73
1385 1419 1.924524 CTACGCCGAATCGAACACATT 59.075 47.619 3.36 0.00 0.00 2.71
1407 1441 4.167268 GCTACTGACTTAGAAGAACCACG 58.833 47.826 0.00 0.00 0.00 4.94
1589 1635 6.803366 ATGTTAACCTTCCGGTACTTCTAT 57.197 37.500 0.00 0.00 44.73 1.98
1599 1645 6.653740 GGGGAATCTATAATGTTAACCTTCCG 59.346 42.308 2.48 0.00 32.31 4.30
1677 1724 7.962995 ACATCTGGAAGTGAGTCTTATCTAA 57.037 36.000 0.00 0.00 36.40 2.10
1708 1755 2.586258 AGCTACAGAGTAATGGTGCG 57.414 50.000 0.00 0.00 0.00 5.34
1709 1756 3.385111 AGGTAGCTACAGAGTAATGGTGC 59.615 47.826 24.75 3.26 0.00 5.01
1759 1806 6.296026 AGGAAAACTAGCACTGTAATCAACA 58.704 36.000 0.00 0.00 36.42 3.33
1794 1841 6.563381 GCCGTGGATATAATAAAACTGTGACG 60.563 42.308 0.00 0.00 0.00 4.35
1796 1843 5.464057 CGCCGTGGATATAATAAAACTGTGA 59.536 40.000 0.00 0.00 0.00 3.58
1819 1866 1.473434 GGAGTAGAATCCAGGCCAACG 60.473 57.143 5.01 0.00 39.34 4.10
1915 1963 8.896744 CCATGATACTGTGAGTGTTGATATTTT 58.103 33.333 0.00 0.00 0.00 1.82
1916 1964 8.267183 TCCATGATACTGTGAGTGTTGATATTT 58.733 33.333 0.00 0.00 0.00 1.40
1917 1965 7.795047 TCCATGATACTGTGAGTGTTGATATT 58.205 34.615 0.00 0.00 0.00 1.28
1920 1968 5.682234 TCCATGATACTGTGAGTGTTGAT 57.318 39.130 0.00 0.00 0.00 2.57
2028 2099 7.090953 ACTTCGTAAAGTTTCATCCACAAAA 57.909 32.000 0.00 0.00 43.28 2.44
2060 2132 3.941483 ACTCCGCATGTAAGATTTTCCTG 59.059 43.478 0.00 0.00 0.00 3.86
2064 2136 8.958119 TCTTTATACTCCGCATGTAAGATTTT 57.042 30.769 0.00 0.00 0.00 1.82
2255 2327 0.322277 CAGTGAGCCAAGCCTGACAT 60.322 55.000 0.00 0.00 0.00 3.06
2384 2459 2.224499 TGCACATCTACTGCTGGTTCAA 60.224 45.455 0.00 0.00 35.53 2.69
2653 2745 1.338020 CCAGCTGTCACCCAAAAACTC 59.662 52.381 13.81 0.00 0.00 3.01
2783 2875 4.540359 TTGCTGGAGAAAATTGATTGGG 57.460 40.909 0.00 0.00 0.00 4.12
2804 2896 7.277396 TGTTGGCTCAGTACTTTAGTAGTTTT 58.723 34.615 0.00 0.00 38.33 2.43
2805 3063 6.823497 TGTTGGCTCAGTACTTTAGTAGTTT 58.177 36.000 0.00 0.00 38.33 2.66
3148 3572 1.755179 AGATTCCAGTGAATTGGCGG 58.245 50.000 0.00 0.00 41.30 6.13
3376 3807 5.989551 AATTGAAAACTGTGCATTGAACC 57.010 34.783 0.00 0.00 0.00 3.62
3425 3858 7.924541 AGGGGTGTATAAGAATACTCAAAACA 58.075 34.615 0.00 0.00 39.05 2.83
3446 3879 6.459066 CAGTGTGAATGTGTATCTATAGGGG 58.541 44.000 0.00 0.00 0.00 4.79
3450 3883 5.365314 TGGGCAGTGTGAATGTGTATCTATA 59.635 40.000 0.00 0.00 0.00 1.31
3483 3916 7.721399 AGAATTTTCAGTGACCAGATTTGTAGT 59.279 33.333 0.00 0.00 0.00 2.73
3505 3993 7.472543 GTCGTGCCTGTCAAAATAAATAGAAT 58.527 34.615 0.00 0.00 0.00 2.40
3866 4376 7.279981 TGTCGAGCAATTATTAACTGCACTATT 59.720 33.333 11.94 0.00 38.58 1.73
4555 5105 2.990066 GGAACAGTCCTGAATCCGAT 57.010 50.000 0.40 0.00 41.24 4.18
4826 5381 0.039618 TCCAATCTCAGGCAAACCCC 59.960 55.000 0.00 0.00 36.11 4.95
4852 5407 4.576216 TTTGTAGCGCAAAATCTTGGAA 57.424 36.364 11.47 0.00 43.39 3.53
4885 5454 7.971455 ACGCTAAAAGCTAAAACCAACTATAG 58.029 34.615 0.00 0.00 39.60 1.31
4908 5477 1.078426 CTAGGGCAACAAGGGGACG 60.078 63.158 0.00 0.00 39.74 4.79
4997 5590 4.944962 TTTACATTTGCTGAGATGGTCG 57.055 40.909 0.00 0.00 0.00 4.79
5008 5601 8.741101 TTTGACAGTCACATATTTACATTTGC 57.259 30.769 1.52 0.00 0.00 3.68
5039 5648 3.055094 TCTTTCATAAGCTCTTCGCCCTT 60.055 43.478 0.00 0.00 40.39 3.95
5145 5756 0.392327 GCTGAAGGAGGTCAGAAGCC 60.392 60.000 6.39 0.00 46.76 4.35
5195 5806 7.550551 TCATACTAGCATCTTGGTTTTTCTCAG 59.449 37.037 0.00 0.00 0.00 3.35
5219 5830 3.325870 CTGAATAAGACACCGTTGCTCA 58.674 45.455 0.00 0.00 0.00 4.26
5222 5833 2.415512 GTCCTGAATAAGACACCGTTGC 59.584 50.000 0.00 0.00 33.08 4.17
5249 5860 6.320164 TCATTATGGATAAAACCGGTTCCTTG 59.680 38.462 22.53 13.26 0.00 3.61
5251 5862 6.008696 TCATTATGGATAAAACCGGTTCCT 57.991 37.500 22.53 13.62 0.00 3.36
5264 5875 9.604569 TTGGGTCATCATTAATTCATTATGGAT 57.395 29.630 0.00 0.00 0.00 3.41
5265 5876 8.859090 GTTGGGTCATCATTAATTCATTATGGA 58.141 33.333 0.00 0.00 0.00 3.41
5266 5877 8.863086 AGTTGGGTCATCATTAATTCATTATGG 58.137 33.333 0.00 0.00 0.00 2.74
5267 5878 9.687210 CAGTTGGGTCATCATTAATTCATTATG 57.313 33.333 0.00 0.00 0.00 1.90
5268 5879 9.645128 TCAGTTGGGTCATCATTAATTCATTAT 57.355 29.630 0.00 0.00 0.00 1.28
5269 5880 8.902806 GTCAGTTGGGTCATCATTAATTCATTA 58.097 33.333 0.00 0.00 0.00 1.90
5270 5881 7.396907 TGTCAGTTGGGTCATCATTAATTCATT 59.603 33.333 0.00 0.00 0.00 2.57
5271 5882 6.891361 TGTCAGTTGGGTCATCATTAATTCAT 59.109 34.615 0.00 0.00 0.00 2.57
5272 5883 6.244654 TGTCAGTTGGGTCATCATTAATTCA 58.755 36.000 0.00 0.00 0.00 2.57
5273 5884 6.757897 TGTCAGTTGGGTCATCATTAATTC 57.242 37.500 0.00 0.00 0.00 2.17
5274 5885 6.721208 AGTTGTCAGTTGGGTCATCATTAATT 59.279 34.615 0.00 0.00 0.00 1.40
5275 5886 6.248433 AGTTGTCAGTTGGGTCATCATTAAT 58.752 36.000 0.00 0.00 0.00 1.40
5276 5887 5.630121 AGTTGTCAGTTGGGTCATCATTAA 58.370 37.500 0.00 0.00 0.00 1.40
5277 5888 5.241403 AGTTGTCAGTTGGGTCATCATTA 57.759 39.130 0.00 0.00 0.00 1.90
5278 5889 4.104383 AGTTGTCAGTTGGGTCATCATT 57.896 40.909 0.00 0.00 0.00 2.57
5279 5890 3.795688 AGTTGTCAGTTGGGTCATCAT 57.204 42.857 0.00 0.00 0.00 2.45
5280 5891 3.007940 CCTAGTTGTCAGTTGGGTCATCA 59.992 47.826 0.00 0.00 0.00 3.07
5281 5892 3.260884 TCCTAGTTGTCAGTTGGGTCATC 59.739 47.826 0.00 0.00 0.00 2.92
5282 5893 3.248024 TCCTAGTTGTCAGTTGGGTCAT 58.752 45.455 0.00 0.00 0.00 3.06
5283 5894 2.632996 CTCCTAGTTGTCAGTTGGGTCA 59.367 50.000 0.00 0.00 0.00 4.02
5284 5895 2.028020 CCTCCTAGTTGTCAGTTGGGTC 60.028 54.545 0.00 0.00 0.00 4.46
5285 5896 1.978580 CCTCCTAGTTGTCAGTTGGGT 59.021 52.381 0.00 0.00 0.00 4.51
5286 5897 1.978580 ACCTCCTAGTTGTCAGTTGGG 59.021 52.381 0.00 0.00 0.00 4.12
5287 5898 3.833070 AGTACCTCCTAGTTGTCAGTTGG 59.167 47.826 0.00 0.00 0.00 3.77
5288 5899 4.082136 GGAGTACCTCCTAGTTGTCAGTTG 60.082 50.000 2.98 0.00 46.41 3.16
5289 5900 4.087907 GGAGTACCTCCTAGTTGTCAGTT 58.912 47.826 2.98 0.00 46.41 3.16
5290 5901 3.699413 GGAGTACCTCCTAGTTGTCAGT 58.301 50.000 2.98 0.00 46.41 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.