Multiple sequence alignment - TraesCS5D01G455500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G455500 chr5D 100.000 3338 0 0 1 3338 502594533 502597870 0.000000e+00 6165.0
1 TraesCS5D01G455500 chr5D 88.112 143 10 4 3198 3338 502613546 502613683 2.660000e-36 163.0
2 TraesCS5D01G455500 chr5D 87.413 143 11 4 3198 3338 502607549 502607686 1.240000e-34 158.0
3 TraesCS5D01G455500 chr5D 86.364 66 3 5 2866 2931 356139651 356139592 2.150000e-07 67.6
4 TraesCS5D01G455500 chr5B 90.604 2916 163 46 1 2863 631462715 631465572 0.000000e+00 3764.0
5 TraesCS5D01G455500 chr5B 90.372 2794 188 40 1 2757 626336309 626339058 0.000000e+00 3594.0
6 TraesCS5D01G455500 chr5B 72.857 490 85 33 1563 2049 79805253 79804809 1.260000e-24 124.0
7 TraesCS5D01G455500 chr5B 86.364 66 3 5 2866 2931 148739246 148739187 2.150000e-07 67.6
8 TraesCS5D01G455500 chr5A 93.305 2151 76 30 672 2799 631329136 631331241 0.000000e+00 3112.0
9 TraesCS5D01G455500 chr5A 76.952 269 44 11 320 581 631327586 631327843 1.620000e-28 137.0
10 TraesCS5D01G455500 chr4D 82.781 302 27 13 1019 1311 344359697 344359982 2.570000e-61 246.0
11 TraesCS5D01G455500 chr4D 96.341 82 3 0 1349 1430 344359983 344360064 5.810000e-28 135.0
12 TraesCS5D01G455500 chr4D 85.849 106 15 0 1942 2047 401077142 401077037 2.720000e-21 113.0
13 TraesCS5D01G455500 chr4A 86.792 106 14 0 1942 2047 58869463 58869358 5.850000e-23 119.0
14 TraesCS5D01G455500 chr3D 87.629 97 12 0 1942 2038 17843166 17843262 2.720000e-21 113.0
15 TraesCS5D01G455500 chr7D 85.981 107 9 3 1955 2058 407071751 407071648 3.520000e-20 110.0
16 TraesCS5D01G455500 chr7D 90.385 52 3 2 2866 2917 10303077 10303126 2.150000e-07 67.6
17 TraesCS5D01G455500 chr7D 86.364 66 3 5 2866 2931 273199394 273199335 2.150000e-07 67.6
18 TraesCS5D01G455500 chrUn 83.929 112 18 0 1942 2053 37382230 37382119 1.270000e-19 108.0
19 TraesCS5D01G455500 chr7A 95.918 49 1 1 2867 2914 691416716 691416764 9.930000e-11 78.7
20 TraesCS5D01G455500 chr7B 91.071 56 3 2 2860 2914 586306893 586306839 1.280000e-09 75.0
21 TraesCS5D01G455500 chr7B 90.385 52 3 2 2866 2917 36104927 36104976 2.150000e-07 67.6
22 TraesCS5D01G455500 chr3B 90.385 52 3 2 2866 2917 641400484 641400533 2.150000e-07 67.6
23 TraesCS5D01G455500 chr3B 90.385 52 3 2 2866 2917 675008568 675008617 2.150000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G455500 chr5D 502594533 502597870 3337 False 6165.0 6165 100.0000 1 3338 1 chr5D.!!$F1 3337
1 TraesCS5D01G455500 chr5B 631462715 631465572 2857 False 3764.0 3764 90.6040 1 2863 1 chr5B.!!$F2 2862
2 TraesCS5D01G455500 chr5B 626336309 626339058 2749 False 3594.0 3594 90.3720 1 2757 1 chr5B.!!$F1 2756
3 TraesCS5D01G455500 chr5A 631327586 631331241 3655 False 1624.5 3112 85.1285 320 2799 2 chr5A.!!$F1 2479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 511 0.035820 GACCATGACGCCACCCTTAA 60.036 55.0 0.0 0.0 0.00 1.85 F
513 564 1.448922 CCTCCTCGTCCGAGTCATCC 61.449 65.0 14.9 0.0 40.44 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 3247 0.322008 CAAGAGGAGTCCTTGTGGCC 60.322 60.0 14.41 0.0 36.99 5.36 R
2391 3345 0.807496 GACCAATCTGTCAGCCAAGC 59.193 55.0 0.00 0.0 35.29 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.112734 TGGTACGACTTATGCATCTTTCAAT 58.887 36.000 0.19 0.00 0.00 2.57
39 40 7.517417 CGACTTATGCATCTTTCAATCCTACAC 60.517 40.741 0.19 0.00 0.00 2.90
77 80 4.257810 TTCCCCCGAGTCCCCACA 62.258 66.667 0.00 0.00 0.00 4.17
130 133 2.357517 CACCGACCGCTTGCTCTT 60.358 61.111 0.00 0.00 0.00 2.85
141 144 0.036875 CTTGCTCTTCTTTCCGGGGT 59.963 55.000 0.00 0.00 0.00 4.95
237 240 0.473755 TATTGATGCACCGCCCATCT 59.526 50.000 0.00 0.00 39.76 2.90
292 295 0.321298 TTTGAACTAGGGGCGTCTGC 60.321 55.000 0.00 0.00 41.71 4.26
305 308 0.994995 CGTCTGCTCCTTCAATCACG 59.005 55.000 0.00 0.00 0.00 4.35
309 312 0.610174 TGCTCCTTCAATCACGCTCT 59.390 50.000 0.00 0.00 0.00 4.09
314 317 4.748892 CTCCTTCAATCACGCTCTCTTAA 58.251 43.478 0.00 0.00 0.00 1.85
316 319 6.465439 TCCTTCAATCACGCTCTCTTAATA 57.535 37.500 0.00 0.00 0.00 0.98
317 320 7.055667 TCCTTCAATCACGCTCTCTTAATAT 57.944 36.000 0.00 0.00 0.00 1.28
338 383 1.114627 CATCACTCATCCTCCCGTGA 58.885 55.000 0.00 0.00 40.27 4.35
363 413 4.550422 TCTTCTGTGAGACACAATCTTCG 58.450 43.478 6.08 0.00 44.08 3.79
379 430 0.881118 TTCGGCCAATCTCTTGCAAC 59.119 50.000 2.24 0.00 0.00 4.17
450 501 3.131223 ACAATGACTAGGAGACCATGACG 59.869 47.826 0.00 0.00 0.00 4.35
452 503 0.386113 GACTAGGAGACCATGACGCC 59.614 60.000 0.00 0.00 0.00 5.68
455 506 1.327690 TAGGAGACCATGACGCCACC 61.328 60.000 12.90 0.00 0.00 4.61
457 508 2.607750 AGACCATGACGCCACCCT 60.608 61.111 0.00 0.00 0.00 4.34
458 509 2.185310 GAGACCATGACGCCACCCTT 62.185 60.000 0.00 0.00 0.00 3.95
460 511 0.035820 GACCATGACGCCACCCTTAA 60.036 55.000 0.00 0.00 0.00 1.85
474 525 5.368989 CCACCCTTAAGAGTTATGGATCAC 58.631 45.833 3.36 0.00 33.48 3.06
476 527 6.051717 CACCCTTAAGAGTTATGGATCACTG 58.948 44.000 3.36 0.00 33.48 3.66
484 535 3.118482 AGTTATGGATCACTGGAGCACTG 60.118 47.826 0.00 0.00 0.00 3.66
500 551 1.480137 CACTGACCTCACATCCTCCTC 59.520 57.143 0.00 0.00 0.00 3.71
513 564 1.448922 CCTCCTCGTCCGAGTCATCC 61.449 65.000 14.90 0.00 40.44 3.51
556 607 2.045634 TCGATCGAGTCCCCACGT 60.046 61.111 15.15 0.00 0.00 4.49
563 614 2.989824 AGTCCCCACGTCTCACCG 60.990 66.667 0.00 0.00 0.00 4.94
564 615 2.987547 GTCCCCACGTCTCACCGA 60.988 66.667 0.00 0.00 0.00 4.69
581 632 3.310860 GACGACCTCCACCGCCATT 62.311 63.158 0.00 0.00 0.00 3.16
623 674 4.704833 GCACTCCTTGCCTCGCCA 62.705 66.667 0.00 0.00 46.63 5.69
624 675 2.270205 CACTCCTTGCCTCGCCAT 59.730 61.111 0.00 0.00 0.00 4.40
625 676 2.110967 CACTCCTTGCCTCGCCATG 61.111 63.158 0.00 0.00 0.00 3.66
626 677 3.207669 CTCCTTGCCTCGCCATGC 61.208 66.667 0.00 0.00 0.00 4.06
646 697 1.900981 CCCATGCCACCGTGTCAAA 60.901 57.895 0.00 0.00 0.00 2.69
667 949 9.313118 GTCAAACCTACAATTTTGTTTCTCAAT 57.687 29.630 0.63 0.00 42.35 2.57
670 952 9.458374 AAACCTACAATTTTGTTTCTCAATACG 57.542 29.630 0.63 0.00 42.35 3.06
776 1675 9.667107 TTCCAGATATGTTCGTCTTAATTTTCT 57.333 29.630 0.00 0.00 0.00 2.52
2055 2985 2.427320 GTGCTGGAGCTGGTGACA 59.573 61.111 0.00 0.00 42.66 3.58
2154 3084 2.716017 CGAGCTGAGGGAGGTGGTC 61.716 68.421 0.00 0.00 30.42 4.02
2346 3276 3.262915 AGGACTCCTCTTGACTTTGGATG 59.737 47.826 0.00 0.00 0.00 3.51
2382 3312 2.086869 GAGCCAGCACTGCAAAATCTA 58.913 47.619 3.30 0.00 0.00 1.98
2390 3344 3.065925 GCACTGCAAAATCTATCCTGACC 59.934 47.826 0.00 0.00 0.00 4.02
2391 3345 3.310774 CACTGCAAAATCTATCCTGACCG 59.689 47.826 0.00 0.00 0.00 4.79
2570 3534 7.255766 GGATGATACTGTGACAGTGATATGAGT 60.256 40.741 27.18 5.85 45.01 3.41
2575 3540 6.398918 ACTGTGACAGTGATATGAGTTTACC 58.601 40.000 18.72 0.00 43.63 2.85
2755 3729 8.086522 TGTAGTCAAGAAACTGATGTTAGGTAC 58.913 37.037 0.00 0.00 34.96 3.34
2756 3730 6.157211 AGTCAAGAAACTGATGTTAGGTACG 58.843 40.000 0.00 0.00 34.96 3.67
2757 3731 4.927425 TCAAGAAACTGATGTTAGGTACGC 59.073 41.667 0.00 0.00 34.96 4.42
2799 3773 7.645058 CCACAATTGGGTTCTTGTTATATCT 57.355 36.000 10.83 0.00 39.57 1.98
2802 3776 8.739039 CACAATTGGGTTCTTGTTATATCTCAA 58.261 33.333 10.83 0.00 33.45 3.02
2803 3777 8.960591 ACAATTGGGTTCTTGTTATATCTCAAG 58.039 33.333 10.83 11.33 41.36 3.02
2804 3778 8.960591 CAATTGGGTTCTTGTTATATCTCAAGT 58.039 33.333 14.97 0.00 40.97 3.16
2810 3784 9.465985 GGTTCTTGTTATATCTCAAGTAGTAGC 57.534 37.037 14.97 8.56 40.97 3.58
2841 3815 3.654321 TCTCCATGATGGTGCATATCCTT 59.346 43.478 11.87 0.00 39.03 3.36
2845 3819 4.217767 CCATGATGGTGCATATCCTTTCTG 59.782 45.833 2.54 0.01 31.35 3.02
2856 3830 6.372659 TGCATATCCTTTCTGAAAGTTGACTC 59.627 38.462 24.18 12.24 36.77 3.36
2863 3837 0.468226 TGAAAGTTGACTCGGCCAGT 59.532 50.000 2.24 5.43 38.45 4.00
2864 3838 1.689813 TGAAAGTTGACTCGGCCAGTA 59.310 47.619 2.24 0.00 34.41 2.74
2865 3839 2.067013 GAAAGTTGACTCGGCCAGTAC 58.933 52.381 2.24 2.05 34.41 2.73
2866 3840 1.339097 AAGTTGACTCGGCCAGTACT 58.661 50.000 2.24 4.39 34.41 2.73
2867 3841 1.339097 AGTTGACTCGGCCAGTACTT 58.661 50.000 2.24 0.00 34.41 2.24
2868 3842 2.522185 AGTTGACTCGGCCAGTACTTA 58.478 47.619 2.24 0.00 34.41 2.24
2869 3843 2.492484 AGTTGACTCGGCCAGTACTTAG 59.508 50.000 2.24 0.00 34.41 2.18
2870 3844 2.211250 TGACTCGGCCAGTACTTAGT 57.789 50.000 2.24 0.00 34.41 2.24
2871 3845 3.354948 TGACTCGGCCAGTACTTAGTA 57.645 47.619 2.24 0.00 34.41 1.82
2872 3846 3.012518 TGACTCGGCCAGTACTTAGTAC 58.987 50.000 14.13 14.13 39.10 2.73
2874 3848 3.277715 ACTCGGCCAGTACTTAGTACTC 58.722 50.000 20.80 11.53 44.86 2.59
2875 3849 2.617774 CTCGGCCAGTACTTAGTACTCC 59.382 54.545 20.80 18.10 44.86 3.85
2876 3850 1.680207 CGGCCAGTACTTAGTACTCCC 59.320 57.143 20.80 20.49 44.86 4.30
2877 3851 2.686118 CGGCCAGTACTTAGTACTCCCT 60.686 54.545 20.80 0.00 44.86 4.20
2878 3852 2.957680 GGCCAGTACTTAGTACTCCCTC 59.042 54.545 20.80 10.54 44.86 4.30
2879 3853 2.957680 GCCAGTACTTAGTACTCCCTCC 59.042 54.545 20.80 5.61 44.86 4.30
2880 3854 3.212685 CCAGTACTTAGTACTCCCTCCG 58.787 54.545 20.80 9.63 44.86 4.63
2881 3855 3.371380 CCAGTACTTAGTACTCCCTCCGT 60.371 52.174 20.80 0.00 44.86 4.69
2882 3856 3.876320 CAGTACTTAGTACTCCCTCCGTC 59.124 52.174 20.80 0.00 44.86 4.79
2883 3857 2.433662 ACTTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
2884 3858 1.307097 CTTAGTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
2885 3859 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2886 3860 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2887 3861 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2888 3862 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2889 3863 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2890 3864 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2891 3865 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2892 3866 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2893 3867 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2894 3868 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2895 3869 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2896 3870 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2897 3871 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2898 3872 3.581755 TCCGTCCGAAAATACTTGTCAG 58.418 45.455 0.00 0.00 0.00 3.51
2899 3873 3.256383 TCCGTCCGAAAATACTTGTCAGA 59.744 43.478 0.00 0.00 0.00 3.27
2900 3874 3.612860 CCGTCCGAAAATACTTGTCAGAG 59.387 47.826 0.00 0.00 0.00 3.35
2901 3875 4.482386 CGTCCGAAAATACTTGTCAGAGA 58.518 43.478 0.00 0.00 0.00 3.10
2902 3876 4.921515 CGTCCGAAAATACTTGTCAGAGAA 59.078 41.667 0.00 0.00 0.00 2.87
2903 3877 5.404366 CGTCCGAAAATACTTGTCAGAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
2904 3878 6.090898 CGTCCGAAAATACTTGTCAGAGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
2905 3879 7.237173 GTCCGAAAATACTTGTCAGAGAAATG 58.763 38.462 0.00 0.00 0.00 2.32
2906 3880 6.371548 TCCGAAAATACTTGTCAGAGAAATGG 59.628 38.462 0.00 0.00 0.00 3.16
2907 3881 6.371548 CCGAAAATACTTGTCAGAGAAATGGA 59.628 38.462 0.00 0.00 0.00 3.41
2908 3882 7.066284 CCGAAAATACTTGTCAGAGAAATGGAT 59.934 37.037 0.00 0.00 0.00 3.41
2909 3883 7.907045 CGAAAATACTTGTCAGAGAAATGGATG 59.093 37.037 0.00 0.00 0.00 3.51
2910 3884 6.690194 AATACTTGTCAGAGAAATGGATGC 57.310 37.500 0.00 0.00 0.00 3.91
2911 3885 4.298103 ACTTGTCAGAGAAATGGATGCT 57.702 40.909 0.00 0.00 0.00 3.79
2912 3886 4.260170 ACTTGTCAGAGAAATGGATGCTC 58.740 43.478 0.00 0.00 0.00 4.26
2913 3887 4.019501 ACTTGTCAGAGAAATGGATGCTCT 60.020 41.667 0.00 0.00 39.46 4.09
2918 3892 5.987777 CAGAGAAATGGATGCTCTGTAAG 57.012 43.478 0.00 0.00 46.51 2.34
2933 3907 6.258230 CTCTGTAAGCATGTTGATTTTCCA 57.742 37.500 0.00 0.00 0.00 3.53
2934 3908 6.258230 TCTGTAAGCATGTTGATTTTCCAG 57.742 37.500 0.00 0.00 0.00 3.86
2935 3909 5.183713 TCTGTAAGCATGTTGATTTTCCAGG 59.816 40.000 0.00 0.00 0.00 4.45
2936 3910 3.967332 AAGCATGTTGATTTTCCAGGG 57.033 42.857 0.00 0.00 0.00 4.45
2937 3911 3.173953 AGCATGTTGATTTTCCAGGGA 57.826 42.857 0.00 0.00 0.00 4.20
2938 3912 3.716431 AGCATGTTGATTTTCCAGGGAT 58.284 40.909 0.00 0.00 0.00 3.85
2939 3913 3.703052 AGCATGTTGATTTTCCAGGGATC 59.297 43.478 0.00 0.00 0.00 3.36
2940 3914 3.448301 GCATGTTGATTTTCCAGGGATCA 59.552 43.478 0.00 0.00 0.00 2.92
2941 3915 4.678840 GCATGTTGATTTTCCAGGGATCAC 60.679 45.833 0.00 0.00 30.10 3.06
2942 3916 4.111255 TGTTGATTTTCCAGGGATCACA 57.889 40.909 0.00 0.00 30.10 3.58
2943 3917 3.826157 TGTTGATTTTCCAGGGATCACAC 59.174 43.478 0.00 4.75 30.10 3.82
2944 3918 3.805066 TGATTTTCCAGGGATCACACA 57.195 42.857 0.00 0.00 0.00 3.72
2945 3919 3.420893 TGATTTTCCAGGGATCACACAC 58.579 45.455 0.00 0.00 0.00 3.82
2946 3920 3.074390 TGATTTTCCAGGGATCACACACT 59.926 43.478 0.00 0.00 0.00 3.55
2947 3921 4.288366 TGATTTTCCAGGGATCACACACTA 59.712 41.667 0.00 0.00 0.00 2.74
2948 3922 4.715534 TTTTCCAGGGATCACACACTAA 57.284 40.909 0.00 0.00 0.00 2.24
2949 3923 4.927267 TTTCCAGGGATCACACACTAAT 57.073 40.909 0.00 0.00 0.00 1.73
2950 3924 6.381498 TTTTCCAGGGATCACACACTAATA 57.619 37.500 0.00 0.00 0.00 0.98
2951 3925 5.353394 TTCCAGGGATCACACACTAATAC 57.647 43.478 0.00 0.00 0.00 1.89
2952 3926 4.620723 TCCAGGGATCACACACTAATACT 58.379 43.478 0.00 0.00 0.00 2.12
2953 3927 5.030147 TCCAGGGATCACACACTAATACTT 58.970 41.667 0.00 0.00 0.00 2.24
2954 3928 5.104941 TCCAGGGATCACACACTAATACTTG 60.105 44.000 0.00 0.00 0.00 3.16
2955 3929 5.118990 CAGGGATCACACACTAATACTTGG 58.881 45.833 0.00 0.00 0.00 3.61
2956 3930 5.030147 AGGGATCACACACTAATACTTGGA 58.970 41.667 0.00 0.00 0.00 3.53
2957 3931 5.129485 AGGGATCACACACTAATACTTGGAG 59.871 44.000 0.00 0.00 0.00 3.86
2958 3932 5.104900 GGGATCACACACTAATACTTGGAGT 60.105 44.000 0.00 0.00 0.00 3.85
2959 3933 6.407202 GGATCACACACTAATACTTGGAGTT 58.593 40.000 0.00 0.00 0.00 3.01
2960 3934 6.879458 GGATCACACACTAATACTTGGAGTTT 59.121 38.462 0.00 0.00 0.00 2.66
2961 3935 8.038944 GGATCACACACTAATACTTGGAGTTTA 58.961 37.037 0.00 0.00 0.00 2.01
2962 3936 9.431887 GATCACACACTAATACTTGGAGTTTAA 57.568 33.333 0.00 0.00 0.00 1.52
2963 3937 9.959721 ATCACACACTAATACTTGGAGTTTAAT 57.040 29.630 0.00 0.00 0.00 1.40
2964 3938 9.787435 TCACACACTAATACTTGGAGTTTAATT 57.213 29.630 0.00 0.00 0.00 1.40
2972 3946 8.823220 AATACTTGGAGTTTAATTATGTGCCT 57.177 30.769 0.00 0.00 0.00 4.75
2973 3947 6.759497 ACTTGGAGTTTAATTATGTGCCTC 57.241 37.500 0.00 0.00 0.00 4.70
2974 3948 5.652452 ACTTGGAGTTTAATTATGTGCCTCC 59.348 40.000 0.00 0.00 37.97 4.30
2975 3949 4.532834 TGGAGTTTAATTATGTGCCTCCC 58.467 43.478 0.00 0.00 36.92 4.30
2976 3950 4.229582 TGGAGTTTAATTATGTGCCTCCCT 59.770 41.667 0.00 0.00 36.92 4.20
2977 3951 4.822350 GGAGTTTAATTATGTGCCTCCCTC 59.178 45.833 0.00 0.00 32.64 4.30
2978 3952 4.793201 AGTTTAATTATGTGCCTCCCTCC 58.207 43.478 0.00 0.00 0.00 4.30
2979 3953 4.478686 AGTTTAATTATGTGCCTCCCTCCT 59.521 41.667 0.00 0.00 0.00 3.69
2980 3954 4.706842 TTAATTATGTGCCTCCCTCCTC 57.293 45.455 0.00 0.00 0.00 3.71
2981 3955 1.051812 ATTATGTGCCTCCCTCCTCG 58.948 55.000 0.00 0.00 0.00 4.63
2982 3956 1.686325 TTATGTGCCTCCCTCCTCGC 61.686 60.000 0.00 0.00 0.00 5.03
2983 3957 2.589610 TATGTGCCTCCCTCCTCGCT 62.590 60.000 0.00 0.00 0.00 4.93
2984 3958 3.394836 GTGCCTCCCTCCTCGCTT 61.395 66.667 0.00 0.00 0.00 4.68
2985 3959 3.077556 TGCCTCCCTCCTCGCTTC 61.078 66.667 0.00 0.00 0.00 3.86
2986 3960 3.855853 GCCTCCCTCCTCGCTTCC 61.856 72.222 0.00 0.00 0.00 3.46
2987 3961 2.364317 CCTCCCTCCTCGCTTCCA 60.364 66.667 0.00 0.00 0.00 3.53
2988 3962 2.726351 CCTCCCTCCTCGCTTCCAC 61.726 68.421 0.00 0.00 0.00 4.02
2989 3963 1.984570 CTCCCTCCTCGCTTCCACA 60.985 63.158 0.00 0.00 0.00 4.17
2990 3964 1.306141 TCCCTCCTCGCTTCCACAT 60.306 57.895 0.00 0.00 0.00 3.21
2991 3965 0.032515 TCCCTCCTCGCTTCCACATA 60.033 55.000 0.00 0.00 0.00 2.29
2992 3966 1.051812 CCCTCCTCGCTTCCACATAT 58.948 55.000 0.00 0.00 0.00 1.78
2993 3967 1.270518 CCCTCCTCGCTTCCACATATG 60.271 57.143 0.00 0.00 0.00 1.78
2994 3968 1.414181 CCTCCTCGCTTCCACATATGT 59.586 52.381 1.41 1.41 0.00 2.29
2995 3969 2.158900 CCTCCTCGCTTCCACATATGTT 60.159 50.000 5.37 0.00 0.00 2.71
2996 3970 3.535561 CTCCTCGCTTCCACATATGTTT 58.464 45.455 5.37 0.00 0.00 2.83
2997 3971 3.270027 TCCTCGCTTCCACATATGTTTG 58.730 45.455 5.37 0.43 0.00 2.93
2998 3972 2.355756 CCTCGCTTCCACATATGTTTGG 59.644 50.000 5.37 5.79 0.00 3.28
2999 3973 3.009723 CTCGCTTCCACATATGTTTGGT 58.990 45.455 5.37 0.00 34.19 3.67
3000 3974 3.417101 TCGCTTCCACATATGTTTGGTT 58.583 40.909 5.37 0.00 34.19 3.67
3001 3975 3.190327 TCGCTTCCACATATGTTTGGTTG 59.810 43.478 5.37 4.68 34.19 3.77
3002 3976 3.253230 GCTTCCACATATGTTTGGTTGC 58.747 45.455 5.37 10.24 34.19 4.17
3003 3977 3.056607 GCTTCCACATATGTTTGGTTGCT 60.057 43.478 5.37 0.00 34.19 3.91
3004 3978 4.561326 GCTTCCACATATGTTTGGTTGCTT 60.561 41.667 5.37 0.00 34.19 3.91
3005 3979 4.517952 TCCACATATGTTTGGTTGCTTG 57.482 40.909 5.37 0.00 34.19 4.01
3006 3980 2.995258 CCACATATGTTTGGTTGCTTGC 59.005 45.455 5.37 0.00 0.00 4.01
3007 3981 2.995258 CACATATGTTTGGTTGCTTGCC 59.005 45.455 5.37 0.00 0.00 4.52
3008 3982 2.632028 ACATATGTTTGGTTGCTTGCCA 59.368 40.909 1.41 0.00 0.00 4.92
3009 3983 3.255725 CATATGTTTGGTTGCTTGCCAG 58.744 45.455 0.00 0.00 37.31 4.85
3018 3992 2.050077 GCTTGCCAGCGACAAACC 60.050 61.111 0.00 0.00 35.91 3.27
3019 3993 2.555547 GCTTGCCAGCGACAAACCT 61.556 57.895 0.00 0.00 35.91 3.50
3020 3994 1.576421 CTTGCCAGCGACAAACCTC 59.424 57.895 0.00 0.00 0.00 3.85
3021 3995 0.886490 CTTGCCAGCGACAAACCTCT 60.886 55.000 0.00 0.00 0.00 3.69
3022 3996 1.165907 TTGCCAGCGACAAACCTCTG 61.166 55.000 0.00 0.00 0.00 3.35
3023 3997 1.301716 GCCAGCGACAAACCTCTGA 60.302 57.895 0.00 0.00 0.00 3.27
3024 3998 1.569479 GCCAGCGACAAACCTCTGAC 61.569 60.000 0.00 0.00 0.00 3.51
3025 3999 0.249868 CCAGCGACAAACCTCTGACA 60.250 55.000 0.00 0.00 0.00 3.58
3026 4000 1.143305 CAGCGACAAACCTCTGACAG 58.857 55.000 0.00 0.00 0.00 3.51
3027 4001 1.040646 AGCGACAAACCTCTGACAGA 58.959 50.000 4.78 4.78 0.00 3.41
3028 4002 1.000283 AGCGACAAACCTCTGACAGAG 60.000 52.381 23.34 23.34 41.96 3.35
3029 4003 1.423395 CGACAAACCTCTGACAGAGC 58.577 55.000 24.62 10.51 40.98 4.09
3030 4004 1.269778 CGACAAACCTCTGACAGAGCA 60.270 52.381 24.62 0.00 40.98 4.26
3031 4005 2.803133 CGACAAACCTCTGACAGAGCAA 60.803 50.000 24.62 0.00 40.98 3.91
3032 4006 3.206150 GACAAACCTCTGACAGAGCAAA 58.794 45.455 24.62 0.00 40.98 3.68
3033 4007 2.945668 ACAAACCTCTGACAGAGCAAAC 59.054 45.455 24.62 0.00 40.98 2.93
3034 4008 3.209410 CAAACCTCTGACAGAGCAAACT 58.791 45.455 24.62 6.05 40.98 2.66
3035 4009 4.141711 ACAAACCTCTGACAGAGCAAACTA 60.142 41.667 24.62 0.00 40.98 2.24
3036 4010 4.689612 AACCTCTGACAGAGCAAACTAA 57.310 40.909 24.62 0.00 40.98 2.24
3037 4011 3.996480 ACCTCTGACAGAGCAAACTAAC 58.004 45.455 24.62 0.00 40.98 2.34
3038 4012 3.244249 ACCTCTGACAGAGCAAACTAACC 60.244 47.826 24.62 0.00 40.98 2.85
3039 4013 3.007398 CCTCTGACAGAGCAAACTAACCT 59.993 47.826 24.62 0.00 40.98 3.50
3040 4014 4.241681 CTCTGACAGAGCAAACTAACCTC 58.758 47.826 19.25 0.00 35.30 3.85
3041 4015 3.006967 TCTGACAGAGCAAACTAACCTCC 59.993 47.826 0.00 0.00 0.00 4.30
3042 4016 2.703536 TGACAGAGCAAACTAACCTCCA 59.296 45.455 0.00 0.00 0.00 3.86
3043 4017 3.327757 TGACAGAGCAAACTAACCTCCAT 59.672 43.478 0.00 0.00 0.00 3.41
3044 4018 3.935828 GACAGAGCAAACTAACCTCCATC 59.064 47.826 0.00 0.00 0.00 3.51
3045 4019 3.274288 CAGAGCAAACTAACCTCCATCC 58.726 50.000 0.00 0.00 0.00 3.51
3046 4020 2.912956 AGAGCAAACTAACCTCCATCCA 59.087 45.455 0.00 0.00 0.00 3.41
3047 4021 3.525199 AGAGCAAACTAACCTCCATCCAT 59.475 43.478 0.00 0.00 0.00 3.41
3048 4022 4.018050 AGAGCAAACTAACCTCCATCCATT 60.018 41.667 0.00 0.00 0.00 3.16
3049 4023 5.191722 AGAGCAAACTAACCTCCATCCATTA 59.808 40.000 0.00 0.00 0.00 1.90
3050 4024 5.193679 AGCAAACTAACCTCCATCCATTAC 58.806 41.667 0.00 0.00 0.00 1.89
3051 4025 4.947388 GCAAACTAACCTCCATCCATTACA 59.053 41.667 0.00 0.00 0.00 2.41
3052 4026 5.163652 GCAAACTAACCTCCATCCATTACAC 60.164 44.000 0.00 0.00 0.00 2.90
3053 4027 5.772393 AACTAACCTCCATCCATTACACA 57.228 39.130 0.00 0.00 0.00 3.72
3054 4028 5.359194 ACTAACCTCCATCCATTACACAG 57.641 43.478 0.00 0.00 0.00 3.66
3055 4029 2.717639 ACCTCCATCCATTACACAGC 57.282 50.000 0.00 0.00 0.00 4.40
3056 4030 1.915489 ACCTCCATCCATTACACAGCA 59.085 47.619 0.00 0.00 0.00 4.41
3057 4031 2.292267 CCTCCATCCATTACACAGCAC 58.708 52.381 0.00 0.00 0.00 4.40
3058 4032 2.356022 CCTCCATCCATTACACAGCACA 60.356 50.000 0.00 0.00 0.00 4.57
3059 4033 3.548770 CTCCATCCATTACACAGCACAT 58.451 45.455 0.00 0.00 0.00 3.21
3060 4034 3.949754 CTCCATCCATTACACAGCACATT 59.050 43.478 0.00 0.00 0.00 2.71
3061 4035 5.109500 TCCATCCATTACACAGCACATTA 57.891 39.130 0.00 0.00 0.00 1.90
3062 4036 4.881273 TCCATCCATTACACAGCACATTAC 59.119 41.667 0.00 0.00 0.00 1.89
3063 4037 4.260743 CCATCCATTACACAGCACATTACG 60.261 45.833 0.00 0.00 0.00 3.18
3064 4038 3.932822 TCCATTACACAGCACATTACGT 58.067 40.909 0.00 0.00 0.00 3.57
3065 4039 4.320023 TCCATTACACAGCACATTACGTT 58.680 39.130 0.00 0.00 0.00 3.99
3066 4040 4.390603 TCCATTACACAGCACATTACGTTC 59.609 41.667 0.00 0.00 0.00 3.95
3067 4041 4.153296 CCATTACACAGCACATTACGTTCA 59.847 41.667 0.00 0.00 0.00 3.18
3068 4042 4.718858 TTACACAGCACATTACGTTCAC 57.281 40.909 0.00 0.00 0.00 3.18
3069 4043 2.833794 ACACAGCACATTACGTTCACT 58.166 42.857 0.00 0.00 0.00 3.41
3070 4044 3.985008 ACACAGCACATTACGTTCACTA 58.015 40.909 0.00 0.00 0.00 2.74
3071 4045 3.739300 ACACAGCACATTACGTTCACTAC 59.261 43.478 0.00 0.00 0.00 2.73
3072 4046 3.738791 CACAGCACATTACGTTCACTACA 59.261 43.478 0.00 0.00 0.00 2.74
3073 4047 4.388773 CACAGCACATTACGTTCACTACAT 59.611 41.667 0.00 0.00 0.00 2.29
3074 4048 5.575218 CACAGCACATTACGTTCACTACATA 59.425 40.000 0.00 0.00 0.00 2.29
3075 4049 6.255670 CACAGCACATTACGTTCACTACATAT 59.744 38.462 0.00 0.00 0.00 1.78
3076 4050 7.434013 CACAGCACATTACGTTCACTACATATA 59.566 37.037 0.00 0.00 0.00 0.86
3077 4051 7.434307 ACAGCACATTACGTTCACTACATATAC 59.566 37.037 0.00 0.00 0.00 1.47
3078 4052 6.921857 AGCACATTACGTTCACTACATATACC 59.078 38.462 0.00 0.00 0.00 2.73
3079 4053 6.129273 GCACATTACGTTCACTACATATACCG 60.129 42.308 0.00 0.00 0.00 4.02
3080 4054 6.914215 CACATTACGTTCACTACATATACCGT 59.086 38.462 0.00 0.00 0.00 4.83
3081 4055 7.112565 CACATTACGTTCACTACATATACCGTC 59.887 40.741 0.00 0.00 0.00 4.79
3082 4056 6.676237 TTACGTTCACTACATATACCGTCA 57.324 37.500 0.00 0.00 0.00 4.35
3083 4057 5.565592 ACGTTCACTACATATACCGTCAA 57.434 39.130 0.00 0.00 0.00 3.18
3084 4058 5.953183 ACGTTCACTACATATACCGTCAAA 58.047 37.500 0.00 0.00 0.00 2.69
3085 4059 5.801947 ACGTTCACTACATATACCGTCAAAC 59.198 40.000 0.00 0.00 0.00 2.93
3086 4060 5.230726 CGTTCACTACATATACCGTCAAACC 59.769 44.000 0.00 0.00 0.00 3.27
3087 4061 5.918426 TCACTACATATACCGTCAAACCA 57.082 39.130 0.00 0.00 0.00 3.67
3088 4062 6.283544 TCACTACATATACCGTCAAACCAA 57.716 37.500 0.00 0.00 0.00 3.67
3089 4063 6.334989 TCACTACATATACCGTCAAACCAAG 58.665 40.000 0.00 0.00 0.00 3.61
3090 4064 6.153170 TCACTACATATACCGTCAAACCAAGA 59.847 38.462 0.00 0.00 0.00 3.02
3091 4065 6.475727 CACTACATATACCGTCAAACCAAGAG 59.524 42.308 0.00 0.00 0.00 2.85
3092 4066 4.766375 ACATATACCGTCAAACCAAGAGG 58.234 43.478 0.00 0.00 42.21 3.69
3093 4067 2.781681 ATACCGTCAAACCAAGAGGG 57.218 50.000 0.00 0.00 44.45 4.30
3094 4068 1.719529 TACCGTCAAACCAAGAGGGA 58.280 50.000 8.70 0.00 42.19 4.20
3095 4069 0.396811 ACCGTCAAACCAAGAGGGAG 59.603 55.000 8.70 0.00 42.19 4.30
3096 4070 0.321653 CCGTCAAACCAAGAGGGAGG 60.322 60.000 0.00 0.00 42.19 4.30
3097 4071 0.321653 CGTCAAACCAAGAGGGAGGG 60.322 60.000 0.00 0.00 41.15 4.30
3098 4072 0.038310 GTCAAACCAAGAGGGAGGGG 59.962 60.000 0.00 0.00 41.15 4.79
3099 4073 1.140134 TCAAACCAAGAGGGAGGGGG 61.140 60.000 0.00 0.00 41.15 5.40
3100 4074 1.140134 CAAACCAAGAGGGAGGGGGA 61.140 60.000 0.00 0.00 41.15 4.81
3101 4075 0.178801 AAACCAAGAGGGAGGGGGAT 60.179 55.000 0.00 0.00 41.15 3.85
3102 4076 0.178801 AACCAAGAGGGAGGGGGATT 60.179 55.000 0.00 0.00 41.15 3.01
3103 4077 0.624795 ACCAAGAGGGAGGGGGATTC 60.625 60.000 0.00 0.00 41.15 2.52
3104 4078 0.624500 CCAAGAGGGAGGGGGATTCA 60.625 60.000 0.00 0.00 40.01 2.57
3105 4079 1.527457 CAAGAGGGAGGGGGATTCAT 58.473 55.000 0.00 0.00 0.00 2.57
3106 4080 1.855599 CAAGAGGGAGGGGGATTCATT 59.144 52.381 0.00 0.00 0.00 2.57
3107 4081 3.056080 CAAGAGGGAGGGGGATTCATTA 58.944 50.000 0.00 0.00 0.00 1.90
3108 4082 3.455085 AGAGGGAGGGGGATTCATTAA 57.545 47.619 0.00 0.00 0.00 1.40
3109 4083 3.056832 AGAGGGAGGGGGATTCATTAAC 58.943 50.000 0.00 0.00 0.00 2.01
3110 4084 2.783510 GAGGGAGGGGGATTCATTAACA 59.216 50.000 0.00 0.00 0.00 2.41
3111 4085 2.514160 AGGGAGGGGGATTCATTAACAC 59.486 50.000 0.00 0.00 0.00 3.32
3112 4086 2.514160 GGGAGGGGGATTCATTAACACT 59.486 50.000 0.00 0.00 0.00 3.55
3113 4087 3.435169 GGGAGGGGGATTCATTAACACTC 60.435 52.174 0.00 0.00 0.00 3.51
3114 4088 3.435169 GGAGGGGGATTCATTAACACTCC 60.435 52.174 0.00 0.00 35.70 3.85
3115 4089 3.197983 AGGGGGATTCATTAACACTCCA 58.802 45.455 0.00 0.00 0.00 3.86
3116 4090 3.793827 AGGGGGATTCATTAACACTCCAT 59.206 43.478 0.00 0.00 0.00 3.41
3117 4091 4.141158 AGGGGGATTCATTAACACTCCATC 60.141 45.833 0.00 0.00 0.00 3.51
3118 4092 4.141158 GGGGGATTCATTAACACTCCATCT 60.141 45.833 0.00 0.00 0.00 2.90
3119 4093 5.073144 GGGGGATTCATTAACACTCCATCTA 59.927 44.000 0.00 0.00 0.00 1.98
3120 4094 5.998363 GGGGATTCATTAACACTCCATCTAC 59.002 44.000 0.00 0.00 0.00 2.59
3121 4095 6.409234 GGGGATTCATTAACACTCCATCTACA 60.409 42.308 0.00 0.00 0.00 2.74
3122 4096 7.054124 GGGATTCATTAACACTCCATCTACAA 58.946 38.462 0.00 0.00 0.00 2.41
3123 4097 7.721399 GGGATTCATTAACACTCCATCTACAAT 59.279 37.037 0.00 0.00 0.00 2.71
3124 4098 9.778741 GGATTCATTAACACTCCATCTACAATA 57.221 33.333 0.00 0.00 0.00 1.90
3126 4100 8.958119 TTCATTAACACTCCATCTACAATACC 57.042 34.615 0.00 0.00 0.00 2.73
3127 4101 8.084985 TCATTAACACTCCATCTACAATACCA 57.915 34.615 0.00 0.00 0.00 3.25
3128 4102 8.544622 TCATTAACACTCCATCTACAATACCAA 58.455 33.333 0.00 0.00 0.00 3.67
3129 4103 9.173021 CATTAACACTCCATCTACAATACCAAA 57.827 33.333 0.00 0.00 0.00 3.28
3130 4104 9.920946 ATTAACACTCCATCTACAATACCAAAT 57.079 29.630 0.00 0.00 0.00 2.32
3131 4105 7.630242 AACACTCCATCTACAATACCAAATG 57.370 36.000 0.00 0.00 0.00 2.32
3132 4106 6.957631 ACACTCCATCTACAATACCAAATGA 58.042 36.000 0.00 0.00 0.00 2.57
3133 4107 7.402054 ACACTCCATCTACAATACCAAATGAA 58.598 34.615 0.00 0.00 0.00 2.57
3134 4108 7.336931 ACACTCCATCTACAATACCAAATGAAC 59.663 37.037 0.00 0.00 0.00 3.18
3135 4109 7.336679 CACTCCATCTACAATACCAAATGAACA 59.663 37.037 0.00 0.00 0.00 3.18
3136 4110 8.055181 ACTCCATCTACAATACCAAATGAACAT 58.945 33.333 0.00 0.00 0.00 2.71
3137 4111 8.450578 TCCATCTACAATACCAAATGAACATC 57.549 34.615 0.00 0.00 0.00 3.06
3138 4112 8.052141 TCCATCTACAATACCAAATGAACATCA 58.948 33.333 0.00 0.00 0.00 3.07
3139 4113 8.853126 CCATCTACAATACCAAATGAACATCAT 58.147 33.333 0.00 0.00 39.09 2.45
3145 4119 8.906867 ACAATACCAAATGAACATCATTAGAGG 58.093 33.333 6.05 10.43 45.57 3.69
3146 4120 8.906867 CAATACCAAATGAACATCATTAGAGGT 58.093 33.333 19.50 19.50 45.57 3.85
3157 4131 7.468141 ACATCATTAGAGGTTATATCTCGCA 57.532 36.000 0.00 0.00 34.67 5.10
3158 4132 7.896811 ACATCATTAGAGGTTATATCTCGCAA 58.103 34.615 0.00 0.00 34.67 4.85
3159 4133 8.367911 ACATCATTAGAGGTTATATCTCGCAAA 58.632 33.333 0.00 0.00 34.67 3.68
3160 4134 9.208022 CATCATTAGAGGTTATATCTCGCAAAA 57.792 33.333 0.00 0.00 36.45 2.44
3161 4135 9.778741 ATCATTAGAGGTTATATCTCGCAAAAA 57.221 29.630 0.00 0.00 36.45 1.94
3224 4198 9.796242 AAGATGGTAATATCTCATCTAATCCCT 57.204 33.333 12.70 0.00 44.56 4.20
3225 4199 9.796242 AGATGGTAATATCTCATCTAATCCCTT 57.204 33.333 11.39 0.00 43.81 3.95
3243 4217 6.930667 TCCCTTTATTTGTATTTACTCCGC 57.069 37.500 0.00 0.00 0.00 5.54
3244 4218 6.416415 TCCCTTTATTTGTATTTACTCCGCA 58.584 36.000 0.00 0.00 0.00 5.69
3245 4219 7.057894 TCCCTTTATTTGTATTTACTCCGCAT 58.942 34.615 0.00 0.00 0.00 4.73
3246 4220 8.212312 TCCCTTTATTTGTATTTACTCCGCATA 58.788 33.333 0.00 0.00 0.00 3.14
3247 4221 9.010029 CCCTTTATTTGTATTTACTCCGCATAT 57.990 33.333 0.00 0.00 0.00 1.78
3252 4226 8.848474 ATTTGTATTTACTCCGCATATTAGCT 57.152 30.769 0.00 0.00 0.00 3.32
3253 4227 7.652300 TTGTATTTACTCCGCATATTAGCTG 57.348 36.000 0.00 0.00 0.00 4.24
3254 4228 6.755206 TGTATTTACTCCGCATATTAGCTGT 58.245 36.000 0.00 0.00 0.00 4.40
3255 4229 6.866770 TGTATTTACTCCGCATATTAGCTGTC 59.133 38.462 0.00 0.00 0.00 3.51
3256 4230 5.531122 TTTACTCCGCATATTAGCTGTCT 57.469 39.130 0.00 0.00 0.00 3.41
3257 4231 3.377346 ACTCCGCATATTAGCTGTCTG 57.623 47.619 0.00 0.00 0.00 3.51
3258 4232 2.959030 ACTCCGCATATTAGCTGTCTGA 59.041 45.455 0.00 0.00 0.00 3.27
3259 4233 3.384789 ACTCCGCATATTAGCTGTCTGAA 59.615 43.478 0.00 0.00 0.00 3.02
3260 4234 3.982475 TCCGCATATTAGCTGTCTGAAG 58.018 45.455 0.00 0.00 0.00 3.02
3261 4235 3.384789 TCCGCATATTAGCTGTCTGAAGT 59.615 43.478 0.00 0.00 0.00 3.01
3262 4236 3.738282 CCGCATATTAGCTGTCTGAAGTC 59.262 47.826 0.00 0.00 0.00 3.01
3263 4237 4.363138 CGCATATTAGCTGTCTGAAGTCA 58.637 43.478 0.00 0.00 0.00 3.41
3264 4238 4.805719 CGCATATTAGCTGTCTGAAGTCAA 59.194 41.667 0.00 0.00 0.00 3.18
3265 4239 5.291858 CGCATATTAGCTGTCTGAAGTCAAA 59.708 40.000 0.00 0.00 0.00 2.69
3266 4240 6.018425 CGCATATTAGCTGTCTGAAGTCAAAT 60.018 38.462 0.00 0.00 0.00 2.32
3267 4241 7.466455 CGCATATTAGCTGTCTGAAGTCAAATT 60.466 37.037 0.00 0.00 0.00 1.82
3268 4242 8.186821 GCATATTAGCTGTCTGAAGTCAAATTT 58.813 33.333 0.00 0.00 0.00 1.82
3275 4249 8.186821 AGCTGTCTGAAGTCAAATTTTATATGC 58.813 33.333 0.00 0.00 0.00 3.14
3276 4250 8.186821 GCTGTCTGAAGTCAAATTTTATATGCT 58.813 33.333 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.619977 GCCAAGAGGAGGAGTGTAGGA 60.620 57.143 0.00 0.00 36.89 2.94
39 40 1.051556 GGGGTAGCCAAGAGGAGGAG 61.052 65.000 14.06 0.00 36.89 3.69
77 80 3.135994 GTGTTGATGACGTTGGTTAGGT 58.864 45.455 0.00 0.00 0.00 3.08
130 133 1.133363 TCTCACAAACCCCGGAAAGA 58.867 50.000 0.73 0.00 0.00 2.52
141 144 4.782691 TCCCTTCTCCATATGTCTCACAAA 59.217 41.667 1.24 0.00 0.00 2.83
197 200 3.452755 AGTGAACACGAACACATCTGA 57.547 42.857 0.00 0.00 39.18 3.27
237 240 6.176896 TGTATCTGAAATTCCGATCAACCAA 58.823 36.000 3.20 0.00 0.00 3.67
292 295 2.957491 AGAGAGCGTGATTGAAGGAG 57.043 50.000 0.00 0.00 0.00 3.69
305 308 6.313411 GGATGAGTGATGCATATTAAGAGAGC 59.687 42.308 0.00 0.00 0.00 4.09
309 312 6.296087 GGGAGGATGAGTGATGCATATTAAGA 60.296 42.308 0.00 0.00 0.00 2.10
314 317 2.235650 CGGGAGGATGAGTGATGCATAT 59.764 50.000 0.00 0.00 0.00 1.78
316 319 0.395686 CGGGAGGATGAGTGATGCAT 59.604 55.000 0.00 0.00 0.00 3.96
317 320 0.977627 ACGGGAGGATGAGTGATGCA 60.978 55.000 0.00 0.00 0.00 3.96
338 383 6.146837 CGAAGATTGTGTCTCACAGAAGAAAT 59.853 38.462 2.93 0.00 45.39 2.17
363 413 1.398390 CTACGTTGCAAGAGATTGGCC 59.602 52.381 0.00 0.00 0.00 5.36
379 430 7.253684 GGTCAAATCTCAATTTCGAGTACTACG 60.254 40.741 0.00 1.66 32.69 3.51
433 484 0.386113 GGCGTCATGGTCTCCTAGTC 59.614 60.000 0.00 0.00 0.00 2.59
438 489 2.125106 GGTGGCGTCATGGTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
450 501 3.926058 TCCATAACTCTTAAGGGTGGC 57.074 47.619 9.23 0.00 0.00 5.01
452 503 6.051717 CAGTGATCCATAACTCTTAAGGGTG 58.948 44.000 9.23 0.00 0.00 4.61
455 506 6.485830 TCCAGTGATCCATAACTCTTAAGG 57.514 41.667 1.85 0.00 0.00 2.69
457 508 5.425217 TGCTCCAGTGATCCATAACTCTTAA 59.575 40.000 0.00 0.00 0.00 1.85
458 509 4.962362 TGCTCCAGTGATCCATAACTCTTA 59.038 41.667 0.00 0.00 0.00 2.10
460 511 3.133721 GTGCTCCAGTGATCCATAACTCT 59.866 47.826 0.00 0.00 0.00 3.24
474 525 0.612229 ATGTGAGGTCAGTGCTCCAG 59.388 55.000 6.89 0.00 0.00 3.86
476 527 0.107945 GGATGTGAGGTCAGTGCTCC 60.108 60.000 0.00 0.00 0.00 4.70
484 535 0.741915 GACGAGGAGGATGTGAGGTC 59.258 60.000 0.00 0.00 0.00 3.85
500 551 2.017559 GAAGGGGGATGACTCGGACG 62.018 65.000 0.00 0.00 0.00 4.79
513 564 3.480133 CTGTAGGCCGGGAAGGGG 61.480 72.222 2.18 0.00 41.48 4.79
556 607 1.970114 GTGGAGGTCGTCGGTGAGA 60.970 63.158 0.00 0.00 0.00 3.27
563 614 3.310860 AATGGCGGTGGAGGTCGTC 62.311 63.158 0.00 0.00 0.00 4.20
564 615 3.310860 GAATGGCGGTGGAGGTCGT 62.311 63.158 0.00 0.00 0.00 4.34
581 632 4.373116 GTCGGTGAGGCGGCAAGA 62.373 66.667 13.08 0.00 0.00 3.02
608 659 2.270205 CATGGCGAGGCAAGGAGT 59.730 61.111 2.86 0.00 0.00 3.85
628 679 1.900981 TTTGACACGGTGGCATGGG 60.901 57.895 18.92 0.00 33.90 4.00
639 690 7.757624 TGAGAAACAAAATTGTAGGTTTGACAC 59.242 33.333 0.00 0.00 41.31 3.67
640 691 7.831753 TGAGAAACAAAATTGTAGGTTTGACA 58.168 30.769 0.00 0.00 41.31 3.58
646 697 7.229907 ACCGTATTGAGAAACAAAATTGTAGGT 59.770 33.333 0.00 0.00 41.31 3.08
707 1606 5.180810 ACAATAGACTTTCTTTCCCCCTC 57.819 43.478 0.00 0.00 0.00 4.30
776 1675 0.042731 ATTCCGGGTCTCCTCTTGGA 59.957 55.000 0.00 0.00 40.69 3.53
876 1784 2.037136 CGAGGGTTGCTTCTGCTGG 61.037 63.158 0.00 0.00 40.48 4.85
919 1831 2.092375 GGGAATTTGGTACTGGAGGGAG 60.092 54.545 0.00 0.00 0.00 4.30
920 1832 1.920351 GGGAATTTGGTACTGGAGGGA 59.080 52.381 0.00 0.00 0.00 4.20
921 1833 1.063942 GGGGAATTTGGTACTGGAGGG 60.064 57.143 0.00 0.00 0.00 4.30
922 1834 1.923148 AGGGGAATTTGGTACTGGAGG 59.077 52.381 0.00 0.00 0.00 4.30
923 1835 2.092375 GGAGGGGAATTTGGTACTGGAG 60.092 54.545 0.00 0.00 0.00 3.86
1011 1932 3.073735 AGGAGCAGGAGCACGAGG 61.074 66.667 0.00 0.00 45.49 4.63
1015 1936 2.730524 GGAGGAGGAGCAGGAGCAC 61.731 68.421 0.00 0.00 45.49 4.40
2317 3247 0.322008 CAAGAGGAGTCCTTGTGGCC 60.322 60.000 14.41 0.00 36.99 5.36
2346 3276 1.367659 GCTCAGTTCTGATCTGTGCC 58.632 55.000 22.75 11.32 42.67 5.01
2382 3312 2.270205 CAGCCAAGCGGTCAGGAT 59.730 61.111 9.93 0.64 33.28 3.24
2390 3344 0.957395 ACCAATCTGTCAGCCAAGCG 60.957 55.000 0.00 0.00 0.00 4.68
2391 3345 0.807496 GACCAATCTGTCAGCCAAGC 59.193 55.000 0.00 0.00 35.29 4.01
2570 3534 4.196193 CTCACAGAACCAACACAGGTAAA 58.804 43.478 0.00 0.00 42.25 2.01
2575 3540 1.869767 GAGCTCACAGAACCAACACAG 59.130 52.381 9.40 0.00 0.00 3.66
2755 3729 0.941463 GATGCCTGTCTCATACGGCG 60.941 60.000 4.80 4.80 45.18 6.46
2756 3730 0.601311 GGATGCCTGTCTCATACGGC 60.601 60.000 0.00 0.00 43.63 5.68
2757 3731 0.034059 GGGATGCCTGTCTCATACGG 59.966 60.000 0.00 0.00 0.00 4.02
2799 3773 9.905713 ATGGAGAAAATTAATGCTACTACTTGA 57.094 29.630 0.00 0.00 0.00 3.02
2804 3778 9.288576 CCATCATGGAGAAAATTAATGCTACTA 57.711 33.333 0.00 0.00 40.96 1.82
2810 3784 6.575267 TGCACCATCATGGAGAAAATTAATG 58.425 36.000 11.90 0.00 40.96 1.90
2841 3815 1.140052 TGGCCGAGTCAACTTTCAGAA 59.860 47.619 0.00 0.00 0.00 3.02
2845 3819 2.067013 GTACTGGCCGAGTCAACTTTC 58.933 52.381 10.60 0.00 35.96 2.62
2863 3837 2.158900 CGGACGGAGGGAGTACTAAGTA 60.159 54.545 0.00 0.00 0.00 2.24
2864 3838 1.407989 CGGACGGAGGGAGTACTAAGT 60.408 57.143 0.00 0.00 0.00 2.24
2865 3839 1.134280 TCGGACGGAGGGAGTACTAAG 60.134 57.143 0.00 0.00 0.00 2.18
2866 3840 0.911769 TCGGACGGAGGGAGTACTAA 59.088 55.000 0.00 0.00 0.00 2.24
2867 3841 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
2868 3842 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
2869 3843 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2870 3844 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2871 3845 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2872 3846 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2873 3847 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2874 3848 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2875 3849 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2876 3850 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2877 3851 3.256383 TCTGACAAGTATTTTCGGACGGA 59.744 43.478 0.00 0.00 0.00 4.69
2878 3852 3.581755 TCTGACAAGTATTTTCGGACGG 58.418 45.455 0.00 0.00 0.00 4.79
2879 3853 4.482386 TCTCTGACAAGTATTTTCGGACG 58.518 43.478 0.00 0.00 0.00 4.79
2880 3854 6.780706 TTTCTCTGACAAGTATTTTCGGAC 57.219 37.500 0.00 0.00 0.00 4.79
2881 3855 6.371548 CCATTTCTCTGACAAGTATTTTCGGA 59.628 38.462 0.00 0.00 0.00 4.55
2882 3856 6.371548 TCCATTTCTCTGACAAGTATTTTCGG 59.628 38.462 0.00 0.00 0.00 4.30
2883 3857 7.364522 TCCATTTCTCTGACAAGTATTTTCG 57.635 36.000 0.00 0.00 0.00 3.46
2884 3858 7.699812 GCATCCATTTCTCTGACAAGTATTTTC 59.300 37.037 0.00 0.00 0.00 2.29
2885 3859 7.395489 AGCATCCATTTCTCTGACAAGTATTTT 59.605 33.333 0.00 0.00 0.00 1.82
2886 3860 6.888632 AGCATCCATTTCTCTGACAAGTATTT 59.111 34.615 0.00 0.00 0.00 1.40
2887 3861 6.421485 AGCATCCATTTCTCTGACAAGTATT 58.579 36.000 0.00 0.00 0.00 1.89
2888 3862 5.999044 AGCATCCATTTCTCTGACAAGTAT 58.001 37.500 0.00 0.00 0.00 2.12
2889 3863 5.188555 AGAGCATCCATTTCTCTGACAAGTA 59.811 40.000 0.00 0.00 35.99 2.24
2890 3864 4.019501 AGAGCATCCATTTCTCTGACAAGT 60.020 41.667 0.00 0.00 35.99 3.16
2891 3865 4.515361 AGAGCATCCATTTCTCTGACAAG 58.485 43.478 0.00 0.00 35.99 3.16
2892 3866 4.564782 AGAGCATCCATTTCTCTGACAA 57.435 40.909 0.00 0.00 35.99 3.18
2910 3884 6.258230 TGGAAAATCAACATGCTTACAGAG 57.742 37.500 0.00 0.00 0.00 3.35
2911 3885 5.183713 CCTGGAAAATCAACATGCTTACAGA 59.816 40.000 0.00 0.00 0.00 3.41
2912 3886 5.404946 CCTGGAAAATCAACATGCTTACAG 58.595 41.667 0.00 0.00 0.00 2.74
2913 3887 4.220382 CCCTGGAAAATCAACATGCTTACA 59.780 41.667 0.00 0.00 0.00 2.41
2914 3888 4.462483 TCCCTGGAAAATCAACATGCTTAC 59.538 41.667 0.00 0.00 0.00 2.34
2915 3889 4.671831 TCCCTGGAAAATCAACATGCTTA 58.328 39.130 0.00 0.00 0.00 3.09
2916 3890 3.509442 TCCCTGGAAAATCAACATGCTT 58.491 40.909 0.00 0.00 0.00 3.91
2917 3891 3.173953 TCCCTGGAAAATCAACATGCT 57.826 42.857 0.00 0.00 0.00 3.79
2918 3892 3.448301 TGATCCCTGGAAAATCAACATGC 59.552 43.478 0.00 0.00 0.00 4.06
2919 3893 4.463539 TGTGATCCCTGGAAAATCAACATG 59.536 41.667 0.00 0.00 31.61 3.21
2920 3894 4.463891 GTGTGATCCCTGGAAAATCAACAT 59.536 41.667 0.00 0.00 31.61 2.71
2921 3895 3.826157 GTGTGATCCCTGGAAAATCAACA 59.174 43.478 0.00 1.22 31.61 3.33
2922 3896 3.826157 TGTGTGATCCCTGGAAAATCAAC 59.174 43.478 0.00 4.34 31.61 3.18
2923 3897 3.826157 GTGTGTGATCCCTGGAAAATCAA 59.174 43.478 0.00 0.00 31.61 2.57
2924 3898 3.074390 AGTGTGTGATCCCTGGAAAATCA 59.926 43.478 0.00 0.00 0.00 2.57
2925 3899 3.690460 AGTGTGTGATCCCTGGAAAATC 58.310 45.455 0.00 0.00 0.00 2.17
2926 3900 3.814504 AGTGTGTGATCCCTGGAAAAT 57.185 42.857 0.00 0.00 0.00 1.82
2927 3901 4.715534 TTAGTGTGTGATCCCTGGAAAA 57.284 40.909 0.00 0.00 0.00 2.29
2928 3902 4.927267 ATTAGTGTGTGATCCCTGGAAA 57.073 40.909 0.00 0.00 0.00 3.13
2929 3903 5.030147 AGTATTAGTGTGTGATCCCTGGAA 58.970 41.667 0.00 0.00 0.00 3.53
2930 3904 4.620723 AGTATTAGTGTGTGATCCCTGGA 58.379 43.478 0.00 0.00 0.00 3.86
2931 3905 5.118990 CAAGTATTAGTGTGTGATCCCTGG 58.881 45.833 0.00 0.00 0.00 4.45
2932 3906 5.104941 TCCAAGTATTAGTGTGTGATCCCTG 60.105 44.000 0.00 0.00 0.00 4.45
2933 3907 5.030147 TCCAAGTATTAGTGTGTGATCCCT 58.970 41.667 0.00 0.00 0.00 4.20
2934 3908 5.104900 ACTCCAAGTATTAGTGTGTGATCCC 60.105 44.000 0.00 0.00 0.00 3.85
2935 3909 5.978814 ACTCCAAGTATTAGTGTGTGATCC 58.021 41.667 0.00 0.00 0.00 3.36
2936 3910 7.907214 AAACTCCAAGTATTAGTGTGTGATC 57.093 36.000 0.00 0.00 0.00 2.92
2937 3911 9.959721 ATTAAACTCCAAGTATTAGTGTGTGAT 57.040 29.630 0.00 0.00 0.00 3.06
2938 3912 9.787435 AATTAAACTCCAAGTATTAGTGTGTGA 57.213 29.630 0.00 0.00 0.00 3.58
2946 3920 9.914834 AGGCACATAATTAAACTCCAAGTATTA 57.085 29.630 0.00 0.00 0.00 0.98
2947 3921 8.823220 AGGCACATAATTAAACTCCAAGTATT 57.177 30.769 0.00 0.00 0.00 1.89
2948 3922 7.502561 GGAGGCACATAATTAAACTCCAAGTAT 59.497 37.037 14.33 0.00 41.93 2.12
2949 3923 6.826741 GGAGGCACATAATTAAACTCCAAGTA 59.173 38.462 14.33 0.00 41.93 2.24
2950 3924 5.652452 GGAGGCACATAATTAAACTCCAAGT 59.348 40.000 14.33 0.00 41.93 3.16
2951 3925 5.067805 GGGAGGCACATAATTAAACTCCAAG 59.932 44.000 18.05 0.00 43.62 3.61
2952 3926 4.953579 GGGAGGCACATAATTAAACTCCAA 59.046 41.667 18.05 0.00 43.62 3.53
2953 3927 4.229582 AGGGAGGCACATAATTAAACTCCA 59.770 41.667 18.05 0.00 43.62 3.86
2954 3928 4.793201 AGGGAGGCACATAATTAAACTCC 58.207 43.478 12.28 12.28 41.68 3.85
2955 3929 4.822350 GGAGGGAGGCACATAATTAAACTC 59.178 45.833 0.00 0.00 0.00 3.01
2956 3930 4.478686 AGGAGGGAGGCACATAATTAAACT 59.521 41.667 0.00 0.00 0.00 2.66
2957 3931 4.793201 AGGAGGGAGGCACATAATTAAAC 58.207 43.478 0.00 0.00 0.00 2.01
2958 3932 4.444306 CGAGGAGGGAGGCACATAATTAAA 60.444 45.833 0.00 0.00 0.00 1.52
2959 3933 3.071023 CGAGGAGGGAGGCACATAATTAA 59.929 47.826 0.00 0.00 0.00 1.40
2960 3934 2.632996 CGAGGAGGGAGGCACATAATTA 59.367 50.000 0.00 0.00 0.00 1.40
2961 3935 1.417890 CGAGGAGGGAGGCACATAATT 59.582 52.381 0.00 0.00 0.00 1.40
2962 3936 1.051812 CGAGGAGGGAGGCACATAAT 58.948 55.000 0.00 0.00 0.00 1.28
2963 3937 1.686325 GCGAGGAGGGAGGCACATAA 61.686 60.000 0.00 0.00 0.00 1.90
2964 3938 2.134287 GCGAGGAGGGAGGCACATA 61.134 63.158 0.00 0.00 0.00 2.29
2965 3939 3.474570 GCGAGGAGGGAGGCACAT 61.475 66.667 0.00 0.00 0.00 3.21
2966 3940 4.704103 AGCGAGGAGGGAGGCACA 62.704 66.667 0.00 0.00 0.00 4.57
2967 3941 3.378399 GAAGCGAGGAGGGAGGCAC 62.378 68.421 0.00 0.00 0.00 5.01
2968 3942 3.077556 GAAGCGAGGAGGGAGGCA 61.078 66.667 0.00 0.00 0.00 4.75
2969 3943 3.855853 GGAAGCGAGGAGGGAGGC 61.856 72.222 0.00 0.00 0.00 4.70
2970 3944 2.364317 TGGAAGCGAGGAGGGAGG 60.364 66.667 0.00 0.00 0.00 4.30
2971 3945 1.333636 ATGTGGAAGCGAGGAGGGAG 61.334 60.000 0.00 0.00 0.00 4.30
2972 3946 0.032515 TATGTGGAAGCGAGGAGGGA 60.033 55.000 0.00 0.00 0.00 4.20
2973 3947 1.051812 ATATGTGGAAGCGAGGAGGG 58.948 55.000 0.00 0.00 0.00 4.30
2974 3948 1.414181 ACATATGTGGAAGCGAGGAGG 59.586 52.381 7.78 0.00 0.00 4.30
2975 3949 2.898729 ACATATGTGGAAGCGAGGAG 57.101 50.000 7.78 0.00 0.00 3.69
2976 3950 3.270027 CAAACATATGTGGAAGCGAGGA 58.730 45.455 9.63 0.00 0.00 3.71
2977 3951 2.355756 CCAAACATATGTGGAAGCGAGG 59.644 50.000 9.63 0.00 37.03 4.63
2978 3952 3.009723 ACCAAACATATGTGGAAGCGAG 58.990 45.455 17.03 1.59 38.36 5.03
2979 3953 3.066291 ACCAAACATATGTGGAAGCGA 57.934 42.857 17.03 0.00 38.36 4.93
2980 3954 3.500982 CAACCAAACATATGTGGAAGCG 58.499 45.455 17.03 2.64 38.36 4.68
2981 3955 3.056607 AGCAACCAAACATATGTGGAAGC 60.057 43.478 17.03 17.39 38.36 3.86
2982 3956 4.789012 AGCAACCAAACATATGTGGAAG 57.211 40.909 17.03 10.43 38.36 3.46
2983 3957 4.798924 GCAAGCAACCAAACATATGTGGAA 60.799 41.667 17.03 0.00 38.36 3.53
2984 3958 3.305950 GCAAGCAACCAAACATATGTGGA 60.306 43.478 17.03 0.00 38.36 4.02
2985 3959 2.995258 GCAAGCAACCAAACATATGTGG 59.005 45.455 9.63 9.93 41.00 4.17
2986 3960 2.995258 GGCAAGCAACCAAACATATGTG 59.005 45.455 9.63 0.00 0.00 3.21
2987 3961 2.632028 TGGCAAGCAACCAAACATATGT 59.368 40.909 1.41 1.41 33.12 2.29
2988 3962 3.255725 CTGGCAAGCAACCAAACATATG 58.744 45.455 0.00 0.00 36.56 1.78
2989 3963 3.598019 CTGGCAAGCAACCAAACATAT 57.402 42.857 0.00 0.00 36.56 1.78
2991 3965 3.993382 CTGGCAAGCAACCAAACAT 57.007 47.368 0.00 0.00 36.56 2.71
3001 3975 2.050077 GGTTTGTCGCTGGCAAGC 60.050 61.111 1.77 1.77 46.66 4.01
3002 3976 0.886490 AGAGGTTTGTCGCTGGCAAG 60.886 55.000 0.00 0.00 0.00 4.01
3003 3977 1.148273 AGAGGTTTGTCGCTGGCAA 59.852 52.632 0.00 0.00 0.00 4.52
3004 3978 1.597854 CAGAGGTTTGTCGCTGGCA 60.598 57.895 0.00 0.00 0.00 4.92
3005 3979 1.301716 TCAGAGGTTTGTCGCTGGC 60.302 57.895 0.00 0.00 0.00 4.85
3006 3980 0.249868 TGTCAGAGGTTTGTCGCTGG 60.250 55.000 0.00 0.00 0.00 4.85
3007 3981 1.143305 CTGTCAGAGGTTTGTCGCTG 58.857 55.000 0.00 0.00 0.00 5.18
3008 3982 1.000283 CTCTGTCAGAGGTTTGTCGCT 60.000 52.381 20.50 0.00 38.67 4.93
3009 3983 1.423395 CTCTGTCAGAGGTTTGTCGC 58.577 55.000 20.50 0.00 38.67 5.19
3010 3984 1.269778 TGCTCTGTCAGAGGTTTGTCG 60.270 52.381 27.35 4.75 42.54 4.35
3011 3985 2.533266 TGCTCTGTCAGAGGTTTGTC 57.467 50.000 27.35 12.61 42.54 3.18
3012 3986 2.945668 GTTTGCTCTGTCAGAGGTTTGT 59.054 45.455 27.35 0.00 42.54 2.83
3013 3987 3.209410 AGTTTGCTCTGTCAGAGGTTTG 58.791 45.455 27.35 6.81 42.54 2.93
3014 3988 3.567478 AGTTTGCTCTGTCAGAGGTTT 57.433 42.857 27.35 0.00 42.54 3.27
3015 3989 4.381411 GTTAGTTTGCTCTGTCAGAGGTT 58.619 43.478 27.35 1.79 42.54 3.50
3016 3990 3.244249 GGTTAGTTTGCTCTGTCAGAGGT 60.244 47.826 27.35 0.00 42.54 3.85
3017 3991 3.007398 AGGTTAGTTTGCTCTGTCAGAGG 59.993 47.826 27.35 12.18 42.54 3.69
3018 3992 4.241681 GAGGTTAGTTTGCTCTGTCAGAG 58.758 47.826 23.34 23.34 45.04 3.35
3019 3993 3.006967 GGAGGTTAGTTTGCTCTGTCAGA 59.993 47.826 1.78 1.78 0.00 3.27
3020 3994 3.244215 TGGAGGTTAGTTTGCTCTGTCAG 60.244 47.826 0.00 0.00 0.00 3.51
3021 3995 2.703536 TGGAGGTTAGTTTGCTCTGTCA 59.296 45.455 0.00 0.00 0.00 3.58
3022 3996 3.402628 TGGAGGTTAGTTTGCTCTGTC 57.597 47.619 0.00 0.00 0.00 3.51
3023 3997 3.307762 GGATGGAGGTTAGTTTGCTCTGT 60.308 47.826 0.00 0.00 0.00 3.41
3024 3998 3.274288 GGATGGAGGTTAGTTTGCTCTG 58.726 50.000 0.00 0.00 0.00 3.35
3025 3999 2.912956 TGGATGGAGGTTAGTTTGCTCT 59.087 45.455 0.00 0.00 0.00 4.09
3026 4000 3.350219 TGGATGGAGGTTAGTTTGCTC 57.650 47.619 0.00 0.00 0.00 4.26
3027 4001 4.322057 AATGGATGGAGGTTAGTTTGCT 57.678 40.909 0.00 0.00 0.00 3.91
3028 4002 4.947388 TGTAATGGATGGAGGTTAGTTTGC 59.053 41.667 0.00 0.00 0.00 3.68
3029 4003 5.943416 TGTGTAATGGATGGAGGTTAGTTTG 59.057 40.000 0.00 0.00 0.00 2.93
3030 4004 6.134535 TGTGTAATGGATGGAGGTTAGTTT 57.865 37.500 0.00 0.00 0.00 2.66
3031 4005 5.745227 CTGTGTAATGGATGGAGGTTAGTT 58.255 41.667 0.00 0.00 0.00 2.24
3032 4006 4.384208 GCTGTGTAATGGATGGAGGTTAGT 60.384 45.833 0.00 0.00 0.00 2.24
3033 4007 4.130118 GCTGTGTAATGGATGGAGGTTAG 58.870 47.826 0.00 0.00 0.00 2.34
3034 4008 3.521531 TGCTGTGTAATGGATGGAGGTTA 59.478 43.478 0.00 0.00 0.00 2.85
3035 4009 2.308570 TGCTGTGTAATGGATGGAGGTT 59.691 45.455 0.00 0.00 0.00 3.50
3036 4010 1.915489 TGCTGTGTAATGGATGGAGGT 59.085 47.619 0.00 0.00 0.00 3.85
3037 4011 2.292267 GTGCTGTGTAATGGATGGAGG 58.708 52.381 0.00 0.00 0.00 4.30
3038 4012 2.989909 TGTGCTGTGTAATGGATGGAG 58.010 47.619 0.00 0.00 0.00 3.86
3039 4013 3.650281 ATGTGCTGTGTAATGGATGGA 57.350 42.857 0.00 0.00 0.00 3.41
3040 4014 4.260743 CGTAATGTGCTGTGTAATGGATGG 60.261 45.833 0.00 0.00 0.00 3.51
3041 4015 4.332543 ACGTAATGTGCTGTGTAATGGATG 59.667 41.667 0.00 0.00 0.00 3.51
3042 4016 4.513442 ACGTAATGTGCTGTGTAATGGAT 58.487 39.130 0.00 0.00 0.00 3.41
3043 4017 3.932822 ACGTAATGTGCTGTGTAATGGA 58.067 40.909 0.00 0.00 0.00 3.41
3044 4018 4.153296 TGAACGTAATGTGCTGTGTAATGG 59.847 41.667 0.00 0.00 0.00 3.16
3045 4019 5.079406 GTGAACGTAATGTGCTGTGTAATG 58.921 41.667 0.00 0.00 0.00 1.90
3046 4020 4.994852 AGTGAACGTAATGTGCTGTGTAAT 59.005 37.500 0.00 0.00 0.00 1.89
3047 4021 4.373527 AGTGAACGTAATGTGCTGTGTAA 58.626 39.130 0.00 0.00 0.00 2.41
3048 4022 3.985008 AGTGAACGTAATGTGCTGTGTA 58.015 40.909 0.00 0.00 0.00 2.90
3049 4023 2.833794 AGTGAACGTAATGTGCTGTGT 58.166 42.857 0.00 0.00 0.00 3.72
3050 4024 3.738791 TGTAGTGAACGTAATGTGCTGTG 59.261 43.478 0.00 0.00 0.00 3.66
3051 4025 3.985008 TGTAGTGAACGTAATGTGCTGT 58.015 40.909 0.00 0.00 0.00 4.40
3052 4026 6.828502 ATATGTAGTGAACGTAATGTGCTG 57.171 37.500 0.00 0.00 33.30 4.41
3053 4027 6.921857 GGTATATGTAGTGAACGTAATGTGCT 59.078 38.462 0.00 0.00 33.30 4.40
3054 4028 6.129273 CGGTATATGTAGTGAACGTAATGTGC 60.129 42.308 0.00 0.00 33.30 4.57
3055 4029 6.914215 ACGGTATATGTAGTGAACGTAATGTG 59.086 38.462 0.00 0.00 33.30 3.21
3056 4030 7.031226 ACGGTATATGTAGTGAACGTAATGT 57.969 36.000 0.00 0.00 33.30 2.71
3057 4031 7.134163 TGACGGTATATGTAGTGAACGTAATG 58.866 38.462 0.00 0.00 33.30 1.90
3058 4032 7.263100 TGACGGTATATGTAGTGAACGTAAT 57.737 36.000 0.00 0.00 33.30 1.89
3059 4033 6.676237 TGACGGTATATGTAGTGAACGTAA 57.324 37.500 0.00 0.00 33.30 3.18
3060 4034 6.676237 TTGACGGTATATGTAGTGAACGTA 57.324 37.500 0.00 0.00 34.09 3.57
3061 4035 5.565592 TTGACGGTATATGTAGTGAACGT 57.434 39.130 0.00 0.00 35.89 3.99
3062 4036 5.230726 GGTTTGACGGTATATGTAGTGAACG 59.769 44.000 0.00 0.00 0.00 3.95
3063 4037 6.101332 TGGTTTGACGGTATATGTAGTGAAC 58.899 40.000 0.00 0.00 0.00 3.18
3064 4038 6.283544 TGGTTTGACGGTATATGTAGTGAA 57.716 37.500 0.00 0.00 0.00 3.18
3065 4039 5.918426 TGGTTTGACGGTATATGTAGTGA 57.082 39.130 0.00 0.00 0.00 3.41
3066 4040 6.334989 TCTTGGTTTGACGGTATATGTAGTG 58.665 40.000 0.00 0.00 0.00 2.74
3067 4041 6.406624 CCTCTTGGTTTGACGGTATATGTAGT 60.407 42.308 0.00 0.00 0.00 2.73
3068 4042 5.983720 CCTCTTGGTTTGACGGTATATGTAG 59.016 44.000 0.00 0.00 0.00 2.74
3069 4043 5.163385 CCCTCTTGGTTTGACGGTATATGTA 60.163 44.000 0.00 0.00 0.00 2.29
3070 4044 4.383770 CCCTCTTGGTTTGACGGTATATGT 60.384 45.833 0.00 0.00 0.00 2.29
3071 4045 4.127171 CCCTCTTGGTTTGACGGTATATG 58.873 47.826 0.00 0.00 0.00 1.78
3072 4046 4.035112 TCCCTCTTGGTTTGACGGTATAT 58.965 43.478 0.00 0.00 34.77 0.86
3073 4047 3.443052 TCCCTCTTGGTTTGACGGTATA 58.557 45.455 0.00 0.00 34.77 1.47
3074 4048 2.236395 CTCCCTCTTGGTTTGACGGTAT 59.764 50.000 0.00 0.00 34.77 2.73
3075 4049 1.621814 CTCCCTCTTGGTTTGACGGTA 59.378 52.381 0.00 0.00 34.77 4.02
3076 4050 0.396811 CTCCCTCTTGGTTTGACGGT 59.603 55.000 0.00 0.00 34.77 4.83
3077 4051 0.321653 CCTCCCTCTTGGTTTGACGG 60.322 60.000 0.00 0.00 34.77 4.79
3078 4052 0.321653 CCCTCCCTCTTGGTTTGACG 60.322 60.000 0.00 0.00 34.77 4.35
3079 4053 0.038310 CCCCTCCCTCTTGGTTTGAC 59.962 60.000 0.00 0.00 34.77 3.18
3080 4054 1.140134 CCCCCTCCCTCTTGGTTTGA 61.140 60.000 0.00 0.00 34.77 2.69
3081 4055 1.140134 TCCCCCTCCCTCTTGGTTTG 61.140 60.000 0.00 0.00 34.77 2.93
3082 4056 0.178801 ATCCCCCTCCCTCTTGGTTT 60.179 55.000 0.00 0.00 34.77 3.27
3083 4057 0.178801 AATCCCCCTCCCTCTTGGTT 60.179 55.000 0.00 0.00 34.77 3.67
3084 4058 0.624795 GAATCCCCCTCCCTCTTGGT 60.625 60.000 0.00 0.00 34.77 3.67
3085 4059 0.624500 TGAATCCCCCTCCCTCTTGG 60.625 60.000 0.00 0.00 0.00 3.61
3086 4060 1.527457 ATGAATCCCCCTCCCTCTTG 58.473 55.000 0.00 0.00 0.00 3.02
3087 4061 2.310413 AATGAATCCCCCTCCCTCTT 57.690 50.000 0.00 0.00 0.00 2.85
3088 4062 3.056832 GTTAATGAATCCCCCTCCCTCT 58.943 50.000 0.00 0.00 0.00 3.69
3089 4063 2.783510 TGTTAATGAATCCCCCTCCCTC 59.216 50.000 0.00 0.00 0.00 4.30
3090 4064 2.514160 GTGTTAATGAATCCCCCTCCCT 59.486 50.000 0.00 0.00 0.00 4.20
3091 4065 2.514160 AGTGTTAATGAATCCCCCTCCC 59.486 50.000 0.00 0.00 0.00 4.30
3092 4066 3.435169 GGAGTGTTAATGAATCCCCCTCC 60.435 52.174 0.00 0.00 0.00 4.30
3093 4067 3.202151 TGGAGTGTTAATGAATCCCCCTC 59.798 47.826 2.54 0.00 0.00 4.30
3094 4068 3.197983 TGGAGTGTTAATGAATCCCCCT 58.802 45.455 2.54 0.00 0.00 4.79
3095 4069 3.662759 TGGAGTGTTAATGAATCCCCC 57.337 47.619 2.54 0.00 0.00 5.40
3096 4070 5.053978 AGATGGAGTGTTAATGAATCCCC 57.946 43.478 2.54 0.00 0.00 4.81
3097 4071 6.591935 TGTAGATGGAGTGTTAATGAATCCC 58.408 40.000 2.54 0.00 0.00 3.85
3098 4072 8.682936 ATTGTAGATGGAGTGTTAATGAATCC 57.317 34.615 0.00 0.00 0.00 3.01
3100 4074 9.561069 GGTATTGTAGATGGAGTGTTAATGAAT 57.439 33.333 0.00 0.00 0.00 2.57
3101 4075 8.544622 TGGTATTGTAGATGGAGTGTTAATGAA 58.455 33.333 0.00 0.00 0.00 2.57
3102 4076 8.084985 TGGTATTGTAGATGGAGTGTTAATGA 57.915 34.615 0.00 0.00 0.00 2.57
3103 4077 8.731275 TTGGTATTGTAGATGGAGTGTTAATG 57.269 34.615 0.00 0.00 0.00 1.90
3104 4078 9.920946 ATTTGGTATTGTAGATGGAGTGTTAAT 57.079 29.630 0.00 0.00 0.00 1.40
3105 4079 9.173021 CATTTGGTATTGTAGATGGAGTGTTAA 57.827 33.333 0.00 0.00 0.00 2.01
3106 4080 8.544622 TCATTTGGTATTGTAGATGGAGTGTTA 58.455 33.333 0.00 0.00 0.00 2.41
3107 4081 7.402054 TCATTTGGTATTGTAGATGGAGTGTT 58.598 34.615 0.00 0.00 0.00 3.32
3108 4082 6.957631 TCATTTGGTATTGTAGATGGAGTGT 58.042 36.000 0.00 0.00 0.00 3.55
3109 4083 7.336679 TGTTCATTTGGTATTGTAGATGGAGTG 59.663 37.037 0.00 0.00 0.00 3.51
3110 4084 7.402054 TGTTCATTTGGTATTGTAGATGGAGT 58.598 34.615 0.00 0.00 0.00 3.85
3111 4085 7.864108 TGTTCATTTGGTATTGTAGATGGAG 57.136 36.000 0.00 0.00 0.00 3.86
3112 4086 8.052141 TGATGTTCATTTGGTATTGTAGATGGA 58.948 33.333 0.00 0.00 0.00 3.41
3113 4087 8.224389 TGATGTTCATTTGGTATTGTAGATGG 57.776 34.615 0.00 0.00 0.00 3.51
3119 4093 8.906867 CCTCTAATGATGTTCATTTGGTATTGT 58.093 33.333 7.94 0.00 44.03 2.71
3120 4094 8.906867 ACCTCTAATGATGTTCATTTGGTATTG 58.093 33.333 7.94 0.00 44.03 1.90
3121 4095 9.479549 AACCTCTAATGATGTTCATTTGGTATT 57.520 29.630 7.94 0.81 44.03 1.89
3130 4104 8.029522 GCGAGATATAACCTCTAATGATGTTCA 58.970 37.037 0.00 0.00 33.99 3.18
3131 4105 8.029522 TGCGAGATATAACCTCTAATGATGTTC 58.970 37.037 0.00 0.00 33.99 3.18
3132 4106 7.896811 TGCGAGATATAACCTCTAATGATGTT 58.103 34.615 0.00 0.00 35.68 2.71
3133 4107 7.468141 TGCGAGATATAACCTCTAATGATGT 57.532 36.000 0.00 0.00 0.00 3.06
3134 4108 8.763049 TTTGCGAGATATAACCTCTAATGATG 57.237 34.615 0.00 0.00 0.00 3.07
3135 4109 9.778741 TTTTTGCGAGATATAACCTCTAATGAT 57.221 29.630 0.00 0.00 0.00 2.45
3198 4172 9.796242 AGGGATTAGATGAGATATTACCATCTT 57.204 33.333 15.75 4.73 42.97 2.40
3199 4173 9.796242 AAGGGATTAGATGAGATATTACCATCT 57.204 33.333 15.20 15.20 46.06 2.90
3217 4191 9.059260 GCGGAGTAAATACAAATAAAGGGATTA 57.941 33.333 0.00 0.00 0.00 1.75
3218 4192 7.558444 TGCGGAGTAAATACAAATAAAGGGATT 59.442 33.333 0.00 0.00 0.00 3.01
3219 4193 7.057894 TGCGGAGTAAATACAAATAAAGGGAT 58.942 34.615 0.00 0.00 0.00 3.85
3220 4194 6.416415 TGCGGAGTAAATACAAATAAAGGGA 58.584 36.000 0.00 0.00 0.00 4.20
3221 4195 6.687081 TGCGGAGTAAATACAAATAAAGGG 57.313 37.500 0.00 0.00 0.00 3.95
3226 4200 9.938280 AGCTAATATGCGGAGTAAATACAAATA 57.062 29.630 0.00 0.00 38.13 1.40
3227 4201 8.721478 CAGCTAATATGCGGAGTAAATACAAAT 58.279 33.333 0.00 0.00 38.13 2.32
3228 4202 7.713507 ACAGCTAATATGCGGAGTAAATACAAA 59.286 33.333 0.00 0.00 38.13 2.83
3229 4203 7.214381 ACAGCTAATATGCGGAGTAAATACAA 58.786 34.615 0.00 0.00 38.13 2.41
3230 4204 6.755206 ACAGCTAATATGCGGAGTAAATACA 58.245 36.000 0.00 0.00 38.13 2.29
3231 4205 7.062371 CAGACAGCTAATATGCGGAGTAAATAC 59.938 40.741 0.00 0.00 38.13 1.89
3232 4206 7.039993 TCAGACAGCTAATATGCGGAGTAAATA 60.040 37.037 0.00 0.00 38.13 1.40
3233 4207 5.928839 CAGACAGCTAATATGCGGAGTAAAT 59.071 40.000 0.00 0.00 38.13 1.40
3234 4208 5.068591 TCAGACAGCTAATATGCGGAGTAAA 59.931 40.000 0.00 0.00 38.13 2.01
3235 4209 4.583073 TCAGACAGCTAATATGCGGAGTAA 59.417 41.667 0.00 0.00 38.13 2.24
3236 4210 4.142038 TCAGACAGCTAATATGCGGAGTA 58.858 43.478 0.00 0.00 38.13 2.59
3237 4211 2.959030 TCAGACAGCTAATATGCGGAGT 59.041 45.455 0.00 0.00 38.13 3.85
3238 4212 3.650070 TCAGACAGCTAATATGCGGAG 57.350 47.619 0.00 0.00 38.13 4.63
3239 4213 3.384789 ACTTCAGACAGCTAATATGCGGA 59.615 43.478 0.00 0.00 38.13 5.54
3240 4214 3.722147 ACTTCAGACAGCTAATATGCGG 58.278 45.455 0.00 0.00 38.13 5.69
3241 4215 4.363138 TGACTTCAGACAGCTAATATGCG 58.637 43.478 0.00 0.00 38.13 4.73
3242 4216 6.668541 TTTGACTTCAGACAGCTAATATGC 57.331 37.500 0.00 0.00 0.00 3.14
3249 4223 8.186821 GCATATAAAATTTGACTTCAGACAGCT 58.813 33.333 0.00 0.00 0.00 4.24
3250 4224 8.186821 AGCATATAAAATTTGACTTCAGACAGC 58.813 33.333 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.