AutoCloner

Multiple sequence alignment - TraesCS5D01G454600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G454600	chr5D	100.000	6837	0	0	1	6837	501513024	501519860	0.000000e+00	12626
1	TraesCS5D01G454600	chr5D	94.554	5270	206	38	38	5251	501214608	501209364	0.000000e+00	8067
2	TraesCS5D01G454600	chr5D	93.665	3157	137	35	29	3143	296877624	296874489	0.000000e+00	4663
3	TraesCS5D01G454600	chr5D	90.528	1288	81	23	4023	5273	296869959	296868676	0.000000e+00	1664
4	TraesCS5D01G454600	chr5D	94.161	959	26	10	4023	4967	296871285	296870343	0.000000e+00	1434
5	TraesCS5D01G454600	chr5D	92.683	902	58	5	4008	4906	296874363	296873467	0.000000e+00	1293
6	TraesCS5D01G454600	chr5D	92.523	107	3	5	2990	3095	369431546	369431648	1.540000e-31	148
7	TraesCS5D01G454600	chr5B	95.820	6842	191	44	42	6837	628825328	628832120	0.000000e+00	10962
8	TraesCS5D01G454600	chr5B	95.672	6863	188	45	42	6837	625225781	625232601	0.000000e+00	10927
9	TraesCS5D01G454600	chr5B	97.985	4317	65	7	2525	6837	633119977	633115679	0.000000e+00	7470
10	TraesCS5D01G454600	chr5B	91.252	2995	162	46	42	2990	623197257	623200197	0.000000e+00	3988
11	TraesCS5D01G454600	chr5B	91.252	2995	163	45	42	2990	626859550	626862491	0.000000e+00	3988
12	TraesCS5D01G454600	chr5B	91.667	2268	129	27	3075	5288	622742203	622739942	0.000000e+00	3086
13	TraesCS5D01G454600	chr5B	90.641	2201	120	35	3074	5225	629978593	629980756	0.000000e+00	2844
14	TraesCS5D01G454600	chr5B	90.896	2087	115	31	22	2072	629975617	629977664	0.000000e+00	2732
15	TraesCS5D01G454600	chr5B	90.409	2054	110	36	5	2002	622745118	622743096	0.000000e+00	2621
16	TraesCS5D01G454600	chr5B	86.222	1125	112	18	412	1515	650957522	650958624	0.000000e+00	1179
17	TraesCS5D01G454600	chr5A	93.906	2560	131	13	450	2995	626061632	626064180	0.000000e+00	3840
18	TraesCS5D01G454600	chr5A	93.963	2551	132	12	453	2993	625690262	625687724	0.000000e+00	3838
19	TraesCS5D01G454600	chr5A	92.417	2242	123	25	3073	5271	626064181	626066418	0.000000e+00	3155
20	TraesCS5D01G454600	chr5A	93.449	1954	108	8	1048	2993	599541962	599543903	0.000000e+00	2881
21	TraesCS5D01G454600	chr5A	96.996	1265	34	2	3073	4333	599543901	599545165	0.000000e+00	2122
22	TraesCS5D01G454600	chrUn	96.451	2057	64	4	1223	3278	356907796	356909844	0.000000e+00	3386
23	TraesCS5D01G454600	chrUn	98.863	1759	17	1	3280	5038	374360000	374361755	0.000000e+00	3134
24	TraesCS5D01G454600	chrUn	97.618	1553	30	2	5290	6837	310637411	310638961	0.000000e+00	2656
25	TraesCS5D01G454600	chrUn	98.083	1252	0	5	4602	5829	419923816	419922565	0.000000e+00	2158
26	TraesCS5D01G454600	chrUn	84.840	376	28	16	42	401	376625884	376625522	1.090000e-92	351
27	TraesCS5D01G454600	chrUn	84.840	376	28	16	42	401	378266704	378266342	1.090000e-92	351
28	TraesCS5D01G454600	chr4B	77.369	517	71	23	4830	5300	477967569	477967053	1.460000e-66	265
29	TraesCS5D01G454600	chr4A	77.895	475	62	18	4830	5261	677564520	677564046	8.800000e-64	255
30	TraesCS5D01G454600	chr4A	83.036	224	14	10	4830	5029	677533558	677533335	1.510000e-41	182
31	TraesCS5D01G454600	chr1B	94.175	103	2	4	2978	3076	26838037	26838139	3.300000e-33	154
32	TraesCS5D01G454600	chr6D	88.889	117	11	2	2979	3094	159020647	159020762	7.150000e-30	143

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G454600	chr5D	501513024	501519860	6836	False	12626.0	12626	100.00000	1	6837	1	chr5D.!!$F2	6836
1	TraesCS5D01G454600	chr5D	501209364	501214608	5244	True	8067.0	8067	94.55400	38	5251	1	chr5D.!!$R1	5213
2	TraesCS5D01G454600	chr5D	296868676	296877624	8948	True	2263.5	4663	92.75925	29	5273	4	chr5D.!!$R2	5244
3	TraesCS5D01G454600	chr5B	628825328	628832120	6792	False	10962.0	10962	95.82000	42	6837	1	chr5B.!!$F4	6795
4	TraesCS5D01G454600	chr5B	625225781	625232601	6820	False	10927.0	10927	95.67200	42	6837	1	chr5B.!!$F2	6795
5	TraesCS5D01G454600	chr5B	633115679	633119977	4298	True	7470.0	7470	97.98500	2525	6837	1	chr5B.!!$R1	4312
6	TraesCS5D01G454600	chr5B	623197257	623200197	2940	False	3988.0	3988	91.25200	42	2990	1	chr5B.!!$F1	2948
7	TraesCS5D01G454600	chr5B	626859550	626862491	2941	False	3988.0	3988	91.25200	42	2990	1	chr5B.!!$F3	2948
8	TraesCS5D01G454600	chr5B	622739942	622745118	5176	True	2853.5	3086	91.03800	5	5288	2	chr5B.!!$R2	5283
9	TraesCS5D01G454600	chr5B	629975617	629980756	5139	False	2788.0	2844	90.76850	22	5225	2	chr5B.!!$F6	5203
10	TraesCS5D01G454600	chr5B	650957522	650958624	1102	False	1179.0	1179	86.22200	412	1515	1	chr5B.!!$F5	1103
11	TraesCS5D01G454600	chr5A	625687724	625690262	2538	True	3838.0	3838	93.96300	453	2993	1	chr5A.!!$R1	2540
12	TraesCS5D01G454600	chr5A	626061632	626066418	4786	False	3497.5	3840	93.16150	450	5271	2	chr5A.!!$F2	4821
13	TraesCS5D01G454600	chr5A	599541962	599545165	3203	False	2501.5	2881	95.22250	1048	4333	2	chr5A.!!$F1	3285
14	TraesCS5D01G454600	chrUn	356907796	356909844	2048	False	3386.0	3386	96.45100	1223	3278	1	chrUn.!!$F2	2055
15	TraesCS5D01G454600	chrUn	374360000	374361755	1755	False	3134.0	3134	98.86300	3280	5038	1	chrUn.!!$F3	1758
16	TraesCS5D01G454600	chrUn	310637411	310638961	1550	False	2656.0	2656	97.61800	5290	6837	1	chrUn.!!$F1	1547
17	TraesCS5D01G454600	chrUn	419922565	419923816	1251	True	2158.0	2158	98.08300	4602	5829	1	chrUn.!!$R3	1227
18	TraesCS5D01G454600	chr4B	477967053	477967569	516	True	265.0	265	77.36900	4830	5300	1	chr4B.!!$R1	470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
295	318	0.251121	TCGAAATGGAGGCCAGCAAA	60.251	50.00	5.01	36.75	3.68	F
1089	1192	2.035066	CCACTTTCCAGCAGTTTCTTGG	59.965	50.00	0.00	0.00	3.61	F
2183	2343	2.092914	GCAGTATACTTCTTGGCCCTGT	60.093	50.00	1.56	0.00	4.00	F
2564	2725	3.320256	TCATGTTTGCCTGTAATGTGCAA	59.680	39.13	0.00	42.77	4.08	F
4184	4365	0.179145	GATGCACATGCCTGTTGAGC	60.179	55.00	0.49	41.18	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1779	1898	1.818674	CAACCCTGATTAGTTGCACCC	59.181	52.381	37.19	4.61	R
2455	2615	1.141657	TGTGAGAAGATATGGGCAGGC	59.858	52.381	0.00	4.85	R
4184	4365	6.910536	AAGAAGCGGATAAGTCTATTTGTG	57.089	37.500	0.00	3.33	R
4590	4774	2.305927	CCTTCACTTACACCATCCCTGT	59.694	50.000	0.00	4.00	R
5968	10634	6.692486	ACTCTCACTTTGACGATGAAACTAT	58.308	36.000	0.00	2.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
207	225	2.092968	TGTTCGATTTGGGATCCAGAGG	60.093	50.000	15.23	0.00	33.81	3.69
217	235	0.397254	GATCCAGAGGTCTTCCCCGA	60.397	60.000	0.00	0.00	0.00	5.14
224	242	2.846827	AGAGGTCTTCCCCGATTGATTT	59.153	45.455	0.00	0.00	0.00	2.17
225	243	2.945668	GAGGTCTTCCCCGATTGATTTG	59.054	50.000	0.00	0.00	0.00	2.32
226	244	2.576191	AGGTCTTCCCCGATTGATTTGA	59.424	45.455	0.00	0.00	0.00	2.69
227	245	2.683362	GGTCTTCCCCGATTGATTTGAC	59.317	50.000	0.00	0.00	0.00	3.18
228	246	3.610911	GTCTTCCCCGATTGATTTGACT	58.389	45.455	0.00	0.00	0.00	3.41
291	314	2.691409	TAAGTCGAAATGGAGGCCAG	57.309	50.000	5.01	0.00	36.75	4.85
294	317	0.960364	GTCGAAATGGAGGCCAGCAA	60.960	55.000	5.01	0.00	36.75	3.91
295	318	0.251121	TCGAAATGGAGGCCAGCAAA	60.251	50.000	5.01	0.00	36.75	3.68
353	390	4.439289	GCCAGTAGCTGCTAATTCCTTTTG	60.439	45.833	11.57	0.00	38.99	2.44
403	440	4.473477	AAGATCTGGTAGTTTTCCCTCG	57.527	45.455	0.00	0.00	0.00	4.63
416	462	4.974645	TTTCCCTCGCATATTCTATGGT	57.025	40.909	0.00	0.00	0.00	3.55
451	497	2.987149	TCTGCACGATTCGACTCTTTTC	59.013	45.455	13.95	0.00	0.00	2.29
626	710	7.283625	TGTGTTGCTGTAGGTTTCAATTAAT	57.716	32.000	0.00	0.00	0.00	1.40
898	1000	2.497675	CAGCTACTAACTTGCTCCCTCA	59.502	50.000	0.00	0.00	34.51	3.86
1089	1192	2.035066	CCACTTTCCAGCAGTTTCTTGG	59.965	50.000	0.00	0.00	0.00	3.61
1092	1195	3.883489	ACTTTCCAGCAGTTTCTTGGTAC	59.117	43.478	0.00	0.00	0.00	3.34
1117	1226	7.885399	ACCAGTTTTTCTTCATCATACTAGCTT	59.115	33.333	0.00	0.00	0.00	3.74
1379	1493	6.995091	GTCCTAGCCTTGTTTATCTGATGATT	59.005	38.462	0.00	0.00	34.32	2.57
1538	1655	8.560355	TCATCTATGCTAAGCTAGTTCTAGAG	57.440	38.462	10.58	1.42	0.00	2.43
1586	1703	9.559958	CATGTTATTGTCTTGAAATAGTTGACC	57.440	33.333	0.00	0.00	0.00	4.02
1589	1706	9.394477	GTTATTGTCTTGAAATAGTTGACCAAC	57.606	33.333	4.81	4.81	41.45	3.77
1751	1870	8.870075	AACTTCCCTCCAATGCTATAATATTC	57.130	34.615	0.00	0.00	0.00	1.75
1833	1952	5.403246	AGAAAGATGCGTAGTTGTGTAGAG	58.597	41.667	0.00	0.00	0.00	2.43
1834	1953	5.183331	AGAAAGATGCGTAGTTGTGTAGAGA	59.817	40.000	0.00	0.00	0.00	3.10
1838	1957	6.037098	AGATGCGTAGTTGTGTAGAGATTTC	58.963	40.000	0.00	0.00	0.00	2.17
1842	1961	5.103000	CGTAGTTGTGTAGAGATTTCTGGG	58.897	45.833	0.00	0.00	34.79	4.45
1964	2083	2.693797	AGCAAAGATCTGTTTGTGCG	57.306	45.000	8.56	0.00	39.27	5.34
1980	2099	4.116747	TGTGCGAAATTGTTTCCTGTTT	57.883	36.364	0.00	0.00	36.30	2.83
1987	2106	7.062848	GCGAAATTGTTTCCTGTTTACAATTG	58.937	34.615	3.24	3.24	46.25	2.32
2010	2129	7.016153	TGTCCTTATGAATGTTTAGACCACT	57.984	36.000	0.00	0.00	0.00	4.00
2064	2224	5.559148	ATTCCCTTCCTAATAGCACTCTG	57.441	43.478	0.00	0.00	0.00	3.35
2183	2343	2.092914	GCAGTATACTTCTTGGCCCTGT	60.093	50.000	1.56	0.00	0.00	4.00
2383	2543	4.404715	TCACCAACATACTTAGAGCTACCC	59.595	45.833	0.00	0.00	0.00	3.69
2455	2615	6.969366	TGTTGTCAAGTGGATTCTGTAAATG	58.031	36.000	0.00	0.00	0.00	2.32
2485	2645	6.219473	CCATATCTTCTCACATGTGGTAGAC	58.781	44.000	25.16	0.00	0.00	2.59
2564	2725	3.320256	TCATGTTTGCCTGTAATGTGCAA	59.680	39.130	0.00	0.00	42.77	4.08
2795	2960	4.750098	CCTTCGTATGTGTTTCAGTTGAGT	59.250	41.667	0.00	0.00	0.00	3.41
2884	3049	5.070685	GGTATTTCCCTGTTCAGTGTCTTT	58.929	41.667	0.00	0.00	0.00	2.52
4184	4365	0.179145	GATGCACATGCCTGTTGAGC	60.179	55.000	0.49	0.00	41.18	4.26
4589	4773	4.038522	CCTGACCGATCATTCTCATGTACT	59.961	45.833	0.00	0.00	33.22	2.73
4590	4774	5.241728	CCTGACCGATCATTCTCATGTACTA	59.758	44.000	0.00	0.00	33.22	1.82
4591	4775	6.073327	TGACCGATCATTCTCATGTACTAC	57.927	41.667	0.00	0.00	0.00	2.73
6024	10690	7.219484	TGTACCTCTACAGTTGTAGGTAAAC	57.781	40.000	16.86	8.94	46.01	2.01
6137	10803	2.755103	GTGGGGTGGAGAATTGATGTTC	59.245	50.000	0.00	0.00	0.00	3.18
6139	10805	2.017049	GGGTGGAGAATTGATGTTCGG	58.983	52.381	0.00	0.00	33.36	4.30
6176	10842	1.722011	ATGGTCGAATCGTGGTGAAC	58.278	50.000	1.52	0.00	0.00	3.18
6266	10932	5.441718	TGAGAGCTACATTCCTTCCAAAT	57.558	39.130	0.00	0.00	0.00	2.32
6421	11087	8.220755	TGTTGTTGAACTTCTATGCTTTTACT	57.779	30.769	0.00	0.00	32.79	2.24
6422	11088	8.682710	TGTTGTTGAACTTCTATGCTTTTACTT	58.317	29.630	0.00	0.00	32.79	2.24
6721	11397	8.754991	TTTTGAACCTCTGGTTACTTATCAAA	57.245	30.769	1.61	5.22	46.95	2.69
6737	11413	0.109597	CAAATGGACAAGCGTGGCTC	60.110	55.000	5.20	0.00	38.25	4.70
6751	11427	2.555325	CGTGGCTCCGATACATACCTAA	59.445	50.000	0.00	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	0.326264	GTTGAGTGGGAGGCTGTGAT	59.674	55.000	0.00	0.00	0.00	3.06
207	225	3.610911	AGTCAAATCAATCGGGGAAGAC	58.389	45.455	0.00	0.00	0.00	3.01
217	235	7.547370	CGGAAGAACTCTTAGAGTCAAATCAAT	59.453	37.037	15.81	3.08	42.59	2.57
224	242	5.301045	TGAAACGGAAGAACTCTTAGAGTCA	59.699	40.000	15.81	2.38	42.59	3.41
225	243	5.770417	TGAAACGGAAGAACTCTTAGAGTC	58.230	41.667	15.81	9.17	42.59	3.36
226	244	5.786264	TGAAACGGAAGAACTCTTAGAGT	57.214	39.130	9.37	9.37	45.64	3.24
227	245	6.144724	CACTTGAAACGGAAGAACTCTTAGAG	59.855	42.308	7.82	7.82	36.11	2.43
228	246	5.983720	CACTTGAAACGGAAGAACTCTTAGA	59.016	40.000	0.00	0.00	36.11	2.10
291	314	5.818136	TCTAGCAAGAACATACCATTTGC	57.182	39.130	0.00	0.00	43.23	3.68
294	317	9.113838	CTGTAAATCTAGCAAGAACATACCATT	57.886	33.333	0.00	0.00	34.73	3.16
295	318	8.267894	ACTGTAAATCTAGCAAGAACATACCAT	58.732	33.333	0.00	0.00	34.73	3.55
353	390	7.780008	AACCACTAAAACAAAATTAGGCAAC	57.220	32.000	0.00	0.00	35.20	4.17
416	462	6.795098	ATCGTGCAGATTTAAGTAACACAA	57.205	33.333	0.00	0.00	35.73	3.33
430	476	2.724977	AAAGAGTCGAATCGTGCAGA	57.275	45.000	7.29	0.00	0.00	4.26
451	497	7.493645	TCTCAGTACTCATGCTACATTTCATTG	59.506	37.037	0.00	0.00	0.00	2.82
509	564	1.260544	GCCCTCTGCTTTGTCCAATT	58.739	50.000	0.00	0.00	36.87	2.32
626	710	2.303022	AGCTCTTGATTTTGACTCCGGA	59.697	45.455	2.93	2.93	0.00	5.14
898	1000	1.829222	CCTTTCAGCCCTGCAAATGAT	59.171	47.619	0.00	0.00	0.00	2.45
1089	1192	8.604890	GCTAGTATGATGAAGAAAAACTGGTAC	58.395	37.037	0.00	0.00	0.00	3.34
1092	1195	7.856145	AGCTAGTATGATGAAGAAAAACTGG	57.144	36.000	0.00	0.00	0.00	4.00
1117	1226	2.441750	AGTGTTAGGGCTCCAGAAAACA	59.558	45.455	0.00	0.00	0.00	2.83
1533	1650	8.759641	GTGCAATCTACATAACATGAACTCTAG	58.240	37.037	0.00	0.00	0.00	2.43
1538	1655	6.435430	TGGTGCAATCTACATAACATGAAC	57.565	37.500	0.00	0.00	0.00	3.18
1586	1703	6.638168	CATATAGTGCATACGATGAGGTTG	57.362	41.667	0.00	0.00	0.00	3.77
1779	1898	1.818674	CAACCCTGATTAGTTGCACCC	59.181	52.381	0.00	0.00	37.19	4.61
1833	1952	6.515272	TGAAGAAGCAATAACCCAGAAATC	57.485	37.500	0.00	0.00	0.00	2.17
1834	1953	7.178983	TCAATGAAGAAGCAATAACCCAGAAAT	59.821	33.333	0.00	0.00	0.00	2.17
1838	1957	5.902613	TCAATGAAGAAGCAATAACCCAG	57.097	39.130	0.00	0.00	0.00	4.45
1842	1961	7.062605	CACCAACATCAATGAAGAAGCAATAAC	59.937	37.037	0.00	0.00	0.00	1.89
1964	2083	8.547894	GGACAATTGTAAACAGGAAACAATTTC	58.452	33.333	11.95	10.01	46.40	2.17
1987	2106	6.879458	ACAGTGGTCTAAACATTCATAAGGAC	59.121	38.462	0.00	0.00	0.00	3.85
2010	2129	7.833682	TCATGGATAGATGCTAAAAAGGAAACA	59.166	33.333	0.00	0.00	0.00	2.83
2064	2224	3.427193	ACAACAAACAAAACAACACGAGC	59.573	39.130	0.00	0.00	0.00	5.03
2160	2320	2.576191	AGGGCCAAGAAGTATACTGCAA	59.424	45.455	13.58	0.00	0.00	4.08
2183	2343	1.881973	GCATCACTTCCAGACTGCAAA	59.118	47.619	0.00	0.00	0.00	3.68
2383	2543	2.738521	CTGCTGGGGACGTTGACG	60.739	66.667	1.41	1.41	46.33	4.35
2440	2600	2.099756	GGCAGGCATTTACAGAATCCAC	59.900	50.000	0.00	0.00	0.00	4.02
2455	2615	1.141657	TGTGAGAAGATATGGGCAGGC	59.858	52.381	0.00	0.00	0.00	4.85
2485	2645	6.151648	ACATGAGTTACAACAGATTGGAATGG	59.848	38.462	0.00	0.00	40.84	3.16
2589	2750	4.039852	TGTTGTGCAGAACCATCTACAGTA	59.960	41.667	22.58	0.00	33.50	2.74
2795	2960	8.960591	GTTTTCTCCTTTCCAGAATCATGATAA	58.039	33.333	9.04	0.00	29.89	1.75
2884	3049	9.969001	AAGTAATGCTTAGTAAAATTGGGAGTA	57.031	29.630	0.00	0.00	35.27	2.59
4184	4365	6.910536	AAGAAGCGGATAAGTCTATTTGTG	57.089	37.500	0.00	0.00	0.00	3.33
4589	4773	3.517901	CCTTCACTTACACCATCCCTGTA	59.482	47.826	0.00	0.00	0.00	2.74
4590	4774	2.305927	CCTTCACTTACACCATCCCTGT	59.694	50.000	0.00	0.00	0.00	4.00
4591	4775	2.941415	GCCTTCACTTACACCATCCCTG	60.941	54.545	0.00	0.00	0.00	4.45
5968	10634	6.692486	ACTCTCACTTTGACGATGAAACTAT	58.308	36.000	0.00	0.00	0.00	2.12
6022	10688	9.265901	CGTCAAAATCATATCTATCTTCCTGTT	57.734	33.333	0.00	0.00	0.00	3.16
6024	10690	8.920665	GTCGTCAAAATCATATCTATCTTCCTG	58.079	37.037	0.00	0.00	0.00	3.86
6137	10803	6.692486	ACCATAGCTTACTTCAATATCTCCG	58.308	40.000	0.00	0.00	0.00	4.63
6139	10805	7.594714	TCGACCATAGCTTACTTCAATATCTC	58.405	38.462	0.00	0.00	0.00	2.75
6266	10932	7.396055	CCTTCAAAGTATGGTAAATTCTTCCCA	59.604	37.037	0.00	0.00	0.00	4.37
6459	11127	7.921786	AAGTGCAATTAAGCTATCACTAACA	57.078	32.000	0.00	0.00	34.14	2.41
6678	11354	7.167302	GGTTCAAAAATGCAATAACTTTTTGCC	59.833	33.333	21.93	16.85	46.97	4.52
6721	11397	2.045926	GGAGCCACGCTTGTCCAT	60.046	61.111	0.00	0.00	39.88	3.41
6737	11413	5.844004	AGTGCTCTTTTAGGTATGTATCGG	58.156	41.667	0.00	0.00	0.00	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.