Multiple sequence alignment - TraesCS5D01G454100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G454100 chr5D 100.000 9126 0 0 1 9126 501198606 501207731 0.000000e+00 16853.0
1 TraesCS5D01G454100 chr5D 87.483 1430 108 30 7477 8890 296865356 296866730 0.000000e+00 1583.0
2 TraesCS5D01G454100 chr5D 86.425 1326 101 42 3337 4603 296697918 296699223 0.000000e+00 1378.0
3 TraesCS5D01G454100 chr5D 86.572 916 58 29 5683 6570 296701179 296702057 0.000000e+00 950.0
4 TraesCS5D01G454100 chr5D 88.822 662 66 6 2596 3256 296690673 296691327 0.000000e+00 806.0
5 TraesCS5D01G454100 chr5D 83.747 886 108 19 4807 5686 296699599 296700454 0.000000e+00 806.0
6 TraesCS5D01G454100 chr5D 86.879 503 48 16 6827 7327 296864717 296865203 1.730000e-151 547.0
7 TraesCS5D01G454100 chr5D 85.514 214 23 5 4601 4814 296699362 296699567 5.550000e-52 217.0
8 TraesCS5D01G454100 chr5D 90.000 150 14 1 6596 6745 296702050 296702198 9.350000e-45 193.0
9 TraesCS5D01G454100 chr5D 89.655 87 9 0 3256 3342 296693487 296693573 2.690000e-20 111.0
10 TraesCS5D01G454100 chr5D 97.297 37 1 0 7365 7401 296865191 296865227 7.650000e-06 63.9
11 TraesCS5D01G454100 chr5B 93.754 4419 197 44 768 5145 622730116 622734496 0.000000e+00 6558.0
12 TraesCS5D01G454100 chr5B 92.718 3447 191 35 5225 8656 622734493 622737894 0.000000e+00 4920.0
13 TraesCS5D01G454100 chr5B 92.939 1402 68 13 3777 5163 626875861 626874476 0.000000e+00 2013.0
14 TraesCS5D01G454100 chr5B 93.703 1191 55 10 3777 4962 623223501 623222326 0.000000e+00 1766.0
15 TraesCS5D01G454100 chr5B 93.118 1177 56 13 5767 6929 623212344 623211179 0.000000e+00 1701.0
16 TraesCS5D01G454100 chr5B 92.099 1177 52 12 5767 6929 626873724 626872575 0.000000e+00 1620.0
17 TraesCS5D01G454100 chr5B 94.653 1010 37 9 2775 3775 626877097 626876096 0.000000e+00 1550.0
18 TraesCS5D01G454100 chr5B 89.803 1167 81 17 7686 8839 629988011 629986870 0.000000e+00 1461.0
19 TraesCS5D01G454100 chr5B 95.000 920 39 7 1749 2664 623224971 623224055 0.000000e+00 1437.0
20 TraesCS5D01G454100 chr5B 94.783 920 40 8 1749 2664 626878012 626877097 0.000000e+00 1426.0
21 TraesCS5D01G454100 chr5B 95.132 719 21 3 5767 6472 623221271 623220554 0.000000e+00 1122.0
22 TraesCS5D01G454100 chr5B 89.192 879 57 16 7980 8839 623207349 623206490 0.000000e+00 1062.0
23 TraesCS5D01G454100 chr5B 89.192 879 57 16 7980 8839 623216241 623215382 0.000000e+00 1062.0
24 TraesCS5D01G454100 chr5B 89.192 879 57 16 7980 8839 626869555 626868696 0.000000e+00 1062.0
25 TraesCS5D01G454100 chr5B 95.089 672 16 7 927 1585 325492149 325492816 0.000000e+00 1042.0
26 TraesCS5D01G454100 chr5B 88.606 825 70 17 5579 6390 631227396 631228209 0.000000e+00 981.0
27 TraesCS5D01G454100 chr5B 96.797 562 15 3 5209 5769 623213026 623212467 0.000000e+00 935.0
28 TraesCS5D01G454100 chr5B 96.797 562 15 3 5209 5769 623221953 623221394 0.000000e+00 935.0
29 TraesCS5D01G454100 chr5B 96.797 562 15 3 5209 5769 626874406 626873847 0.000000e+00 935.0
30 TraesCS5D01G454100 chr5B 94.545 550 23 3 2775 3324 623224055 623223513 0.000000e+00 843.0
31 TraesCS5D01G454100 chr5B 94.811 424 19 2 7560 7983 626871919 626871499 0.000000e+00 658.0
32 TraesCS5D01G454100 chr5B 96.516 287 9 1 6990 7275 626872548 626872262 2.980000e-129 473.0
33 TraesCS5D01G454100 chr5B 96.167 287 10 1 6990 7275 623211152 623210866 1.390000e-127 468.0
34 TraesCS5D01G454100 chr5B 96.029 277 10 1 7560 7836 623210523 623210248 5.030000e-122 449.0
35 TraesCS5D01G454100 chr5B 91.667 240 15 2 8887 9126 623206480 623206246 2.460000e-85 327.0
36 TraesCS5D01G454100 chr5B 91.667 240 15 2 8887 9126 623215372 623215138 2.460000e-85 327.0
37 TraesCS5D01G454100 chr5B 91.667 240 15 2 8887 9126 626868686 626868452 2.460000e-85 327.0
38 TraesCS5D01G454100 chr5B 91.667 240 15 2 8887 9126 629986860 629986626 2.460000e-85 327.0
39 TraesCS5D01G454100 chr5B 93.035 201 12 2 4964 5163 623213295 623213096 8.960000e-75 292.0
40 TraesCS5D01G454100 chr5B 93.035 201 12 2 4964 5163 623222222 623222023 8.960000e-75 292.0
41 TraesCS5D01G454100 chr5B 87.156 218 11 4 8906 9122 622738206 622738407 1.980000e-56 231.0
42 TraesCS5D01G454100 chr5B 93.151 146 8 1 7838 7983 623209387 623209244 7.180000e-51 213.0
43 TraesCS5D01G454100 chr5B 93.151 146 8 1 7838 7983 623219341 623219198 7.180000e-51 213.0
44 TraesCS5D01G454100 chr5B 86.702 188 15 6 798 977 623225859 623225674 5.590000e-47 200.0
45 TraesCS5D01G454100 chr5B 86.702 188 15 6 798 977 626878900 626878715 5.590000e-47 200.0
46 TraesCS5D01G454100 chr5B 94.167 120 6 1 7560 7679 629988273 629988155 2.020000e-41 182.0
47 TraesCS5D01G454100 chr5B 90.076 131 7 3 7281 7410 623210801 623210676 2.040000e-36 165.0
48 TraesCS5D01G454100 chr5B 90.076 131 7 3 7281 7410 626872197 626872072 2.040000e-36 165.0
49 TraesCS5D01G454100 chr5B 91.463 82 3 2 7477 7557 623210667 623210589 9.690000e-20 110.0
50 TraesCS5D01G454100 chr5B 91.463 82 3 2 7477 7557 626872063 626871985 9.690000e-20 110.0
51 TraesCS5D01G454100 chr5B 95.000 40 2 0 5300 5339 631226631 631226670 7.650000e-06 63.9
52 TraesCS5D01G454100 chr5A 94.747 3674 100 30 5225 8890 626072040 626068452 0.000000e+00 5629.0
53 TraesCS5D01G454100 chr5A 93.779 3022 157 20 139 3143 626077427 626074420 0.000000e+00 4510.0
54 TraesCS5D01G454100 chr5A 96.571 2012 49 13 3143 5145 626074037 626072037 0.000000e+00 3315.0
55 TraesCS5D01G454100 chr5A 85.595 1437 110 37 7477 8890 625674270 625675632 0.000000e+00 1417.0
56 TraesCS5D01G454100 chr5A 85.487 503 42 20 6827 7327 625673646 625674119 6.360000e-136 496.0
57 TraesCS5D01G454100 chr5A 97.297 37 1 0 7365 7401 625674107 625674143 7.650000e-06 63.9
58 TraesCS5D01G454100 chr3B 96.108 668 12 7 928 1585 588647645 588646982 0.000000e+00 1077.0
59 TraesCS5D01G454100 chr3B 89.062 64 7 0 8827 8890 476956016 476956079 7.600000e-11 80.5
60 TraesCS5D01G454100 chr4B 95.152 660 24 5 927 1585 635261094 635260442 0.000000e+00 1035.0
61 TraesCS5D01G454100 chr4B 94.918 669 20 7 927 1585 649510260 649510924 0.000000e+00 1035.0
62 TraesCS5D01G454100 chr4B 95.506 89 4 0 5144 5232 106975942 106975854 9.550000e-30 143.0
63 TraesCS5D01G454100 chr2B 95.030 664 23 8 927 1585 785017155 785017813 0.000000e+00 1035.0
64 TraesCS5D01G454100 chr2B 92.784 97 6 1 5143 5239 36604178 36604083 1.240000e-28 139.0
65 TraesCS5D01G454100 chr6B 94.084 693 19 10 910 1585 33182496 33183183 0.000000e+00 1033.0
66 TraesCS5D01G454100 chr7B 94.768 669 21 8 927 1585 465168126 465167462 0.000000e+00 1029.0
67 TraesCS5D01G454100 chr7B 94.915 59 3 0 8834 8892 505937314 505937372 9.760000e-15 93.5
68 TraesCS5D01G454100 chrUn 94.907 216 10 1 1749 1963 480639591 480639806 4.080000e-88 337.0
69 TraesCS5D01G454100 chrUn 93.151 146 8 1 7838 7983 358481350 358481207 7.180000e-51 213.0
70 TraesCS5D01G454100 chr4D 76.212 433 58 27 5791 6206 508516925 508516521 4.350000e-43 187.0
71 TraesCS5D01G454100 chr1A 97.727 88 2 0 5144 5231 293713824 293713737 1.590000e-32 152.0
72 TraesCS5D01G454100 chr3D 94.737 95 5 0 5140 5234 436459801 436459707 2.050000e-31 148.0
73 TraesCS5D01G454100 chr3D 94.737 95 4 1 5135 5229 293183792 293183885 7.380000e-31 147.0
74 TraesCS5D01G454100 chr3D 89.062 64 7 0 8827 8890 365921884 365921947 7.600000e-11 80.5
75 TraesCS5D01G454100 chr1B 96.591 88 3 0 5144 5231 326769503 326769416 7.380000e-31 147.0
76 TraesCS5D01G454100 chr7D 94.681 94 4 1 5138 5230 426558892 426558985 2.660000e-30 145.0
77 TraesCS5D01G454100 chr7D 88.158 76 7 2 8818 8892 33102870 33102796 1.260000e-13 89.8
78 TraesCS5D01G454100 chr7D 93.103 58 4 0 8834 8891 480002591 480002648 1.630000e-12 86.1
79 TraesCS5D01G454100 chr1D 96.591 88 2 1 5144 5231 226451186 226451100 2.660000e-30 145.0
80 TraesCS5D01G454100 chr6D 94.624 93 3 2 5141 5231 120657665 120657573 9.550000e-30 143.0
81 TraesCS5D01G454100 chr6A 93.220 59 4 0 8834 8892 430338756 430338814 4.540000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G454100 chr5D 501198606 501207731 9125 False 16853.000000 16853 100.000000 1 9126 1 chr5D.!!$F1 9125
1 TraesCS5D01G454100 chr5D 296864717 296866730 2013 False 731.300000 1583 90.553000 6827 8890 3 chr5D.!!$F4 2063
2 TraesCS5D01G454100 chr5D 296697918 296702198 4280 False 708.800000 1378 86.451600 3337 6745 5 chr5D.!!$F3 3408
3 TraesCS5D01G454100 chr5D 296690673 296693573 2900 False 458.500000 806 89.238500 2596 3342 2 chr5D.!!$F2 746
4 TraesCS5D01G454100 chr5B 622730116 622738407 8291 False 3903.000000 6558 91.209333 768 9122 3 chr5B.!!$F2 8354
5 TraesCS5D01G454100 chr5B 325492149 325492816 667 False 1042.000000 1042 95.089000 927 1585 1 chr5B.!!$F1 658
6 TraesCS5D01G454100 chr5B 626868452 626878900 10448 True 878.250000 2013 92.641500 798 9126 12 chr5B.!!$R2 8328
7 TraesCS5D01G454100 chr5B 623206246 623225859 19613 True 695.950000 1766 92.980950 798 9126 20 chr5B.!!$R1 8328
8 TraesCS5D01G454100 chr5B 629986626 629988273 1647 True 656.666667 1461 91.879000 7560 9126 3 chr5B.!!$R3 1566
9 TraesCS5D01G454100 chr5B 631226631 631228209 1578 False 522.450000 981 91.803000 5300 6390 2 chr5B.!!$F3 1090
10 TraesCS5D01G454100 chr5A 626068452 626077427 8975 True 4484.666667 5629 95.032333 139 8890 3 chr5A.!!$R1 8751
11 TraesCS5D01G454100 chr5A 625673646 625675632 1986 False 658.966667 1417 89.459667 6827 8890 3 chr5A.!!$F1 2063
12 TraesCS5D01G454100 chr3B 588646982 588647645 663 True 1077.000000 1077 96.108000 928 1585 1 chr3B.!!$R1 657
13 TraesCS5D01G454100 chr4B 635260442 635261094 652 True 1035.000000 1035 95.152000 927 1585 1 chr4B.!!$R2 658
14 TraesCS5D01G454100 chr4B 649510260 649510924 664 False 1035.000000 1035 94.918000 927 1585 1 chr4B.!!$F1 658
15 TraesCS5D01G454100 chr2B 785017155 785017813 658 False 1035.000000 1035 95.030000 927 1585 1 chr2B.!!$F1 658
16 TraesCS5D01G454100 chr6B 33182496 33183183 687 False 1033.000000 1033 94.084000 910 1585 1 chr6B.!!$F1 675
17 TraesCS5D01G454100 chr7B 465167462 465168126 664 True 1029.000000 1029 94.768000 927 1585 1 chr7B.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.035820 ACATACGTTGCCATCGGGTT 60.036 50.000 0.00 0.00 36.17 4.11 F
672 677 0.179240 GACACGAGCACATGAAAGCG 60.179 55.000 0.00 0.19 35.48 4.68 F
1472 1533 0.966179 ATTCCAACCCTTTTGGCGAC 59.034 50.000 0.00 0.00 39.38 5.19 F
1838 2026 1.132643 CGTTCTTGGCTAGCGTACTCT 59.867 52.381 9.00 0.00 0.00 3.24 F
2323 2514 3.045634 TGTCCTCAGAAGACCCTTTTCA 58.954 45.455 0.00 0.00 33.09 2.69 F
3316 6055 1.615392 GGGCCATTGGTCTTATGCATC 59.385 52.381 0.19 0.00 0.00 3.91 F
4406 7448 0.106149 CCCCGTTGTATGCTCCCTAC 59.894 60.000 0.00 0.00 0.00 3.18 F
5205 17458 3.136626 AGTGTAGTGTCCAAAAGGCTCTT 59.863 43.478 0.00 0.00 0.00 2.85 F
6400 20080 2.114616 GAGGAAGATGGCTCCTTCTCA 58.885 52.381 15.32 0.00 39.80 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1533 1.059913 ACTTCTCTGTGAGGTTGGGG 58.940 55.000 0.00 0.0 30.27 4.96 R
1818 2006 1.132643 AGAGTACGCTAGCCAAGAACG 59.867 52.381 9.66 0.0 0.00 3.95 R
2747 2942 0.388659 TCGCCAAACAAAGCTGCAAT 59.611 45.000 1.02 0.0 0.00 3.56 R
2817 3012 5.010012 CCTCTGCCTTTTCTTTTCAGCTTTA 59.990 40.000 0.00 0.0 0.00 1.85 R
4297 7332 2.039613 GCCTAAGCCCTAATGAGCAGAT 59.960 50.000 0.00 0.0 0.00 2.90 R
5214 17467 0.108281 GCCAACTACTCCCTTCGTCC 60.108 60.000 0.00 0.0 0.00 4.79 R
5215 17468 0.606604 TGCCAACTACTCCCTTCGTC 59.393 55.000 0.00 0.0 0.00 4.20 R
6705 20402 0.818296 GAAGGCCTAGAACTGCTCGA 59.182 55.000 5.16 0.0 0.00 4.04 R
8209 25068 1.035932 GTGACACGGGAGCTAGCCTA 61.036 60.000 12.13 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.743208 CACGCATGGTGGTGACAA 58.257 55.556 0.00 0.00 46.06 3.18
20 21 2.028936 CACGCATGGTGGTGACAAA 58.971 52.632 0.00 0.00 46.06 2.83
21 22 0.040157 CACGCATGGTGGTGACAAAG 60.040 55.000 0.00 0.00 46.06 2.77
22 23 0.465460 ACGCATGGTGGTGACAAAGT 60.465 50.000 0.00 0.00 46.06 2.66
23 24 0.040157 CGCATGGTGGTGACAAAGTG 60.040 55.000 0.00 0.00 46.06 3.16
24 25 0.314935 GCATGGTGGTGACAAAGTGG 59.685 55.000 0.00 0.00 46.06 4.00
25 26 1.979855 CATGGTGGTGACAAAGTGGA 58.020 50.000 0.00 0.00 46.06 4.02
26 27 1.881973 CATGGTGGTGACAAAGTGGAG 59.118 52.381 0.00 0.00 46.06 3.86
27 28 0.182537 TGGTGGTGACAAAGTGGAGG 59.817 55.000 0.00 0.00 46.06 4.30
28 29 0.472471 GGTGGTGACAAAGTGGAGGA 59.528 55.000 0.00 0.00 46.06 3.71
29 30 1.133915 GGTGGTGACAAAGTGGAGGAA 60.134 52.381 0.00 0.00 46.06 3.36
30 31 1.947456 GTGGTGACAAAGTGGAGGAAC 59.053 52.381 0.00 0.00 46.06 3.62
31 32 1.562008 TGGTGACAAAGTGGAGGAACA 59.438 47.619 0.00 0.00 37.44 3.18
32 33 1.947456 GGTGACAAAGTGGAGGAACAC 59.053 52.381 0.00 0.00 41.63 3.32
33 34 2.639065 GTGACAAAGTGGAGGAACACA 58.361 47.619 0.00 0.00 43.72 3.72
34 35 2.354821 GTGACAAAGTGGAGGAACACAC 59.645 50.000 0.00 0.00 43.72 3.82
35 36 1.947456 GACAAAGTGGAGGAACACACC 59.053 52.381 0.00 0.00 43.72 4.16
36 37 1.564348 ACAAAGTGGAGGAACACACCT 59.436 47.619 0.00 0.00 43.72 4.00
37 38 2.025321 ACAAAGTGGAGGAACACACCTT 60.025 45.455 0.00 0.00 43.72 3.50
38 39 2.618709 CAAAGTGGAGGAACACACCTTC 59.381 50.000 0.00 0.00 43.72 3.46
39 40 0.393077 AGTGGAGGAACACACCTTCG 59.607 55.000 0.00 0.00 43.72 3.79
40 41 0.391597 GTGGAGGAACACACCTTCGA 59.608 55.000 0.00 0.00 40.73 3.71
41 42 0.391597 TGGAGGAACACACCTTCGAC 59.608 55.000 0.00 0.00 40.73 4.20
42 43 0.391597 GGAGGAACACACCTTCGACA 59.608 55.000 0.00 0.00 40.73 4.35
43 44 1.002087 GGAGGAACACACCTTCGACAT 59.998 52.381 0.00 0.00 40.73 3.06
44 45 2.232941 GGAGGAACACACCTTCGACATA 59.767 50.000 0.00 0.00 40.73 2.29
45 46 3.251571 GAGGAACACACCTTCGACATAC 58.748 50.000 0.00 0.00 40.73 2.39
46 47 1.990563 GGAACACACCTTCGACATACG 59.009 52.381 0.00 0.00 44.09 3.06
47 48 2.608752 GGAACACACCTTCGACATACGT 60.609 50.000 0.00 0.00 43.13 3.57
48 49 2.806608 ACACACCTTCGACATACGTT 57.193 45.000 0.00 0.00 43.13 3.99
49 50 2.400399 ACACACCTTCGACATACGTTG 58.600 47.619 0.00 0.00 43.13 4.10
50 51 1.126113 CACACCTTCGACATACGTTGC 59.874 52.381 0.00 0.00 43.13 4.17
51 52 0.719465 CACCTTCGACATACGTTGCC 59.281 55.000 0.00 0.00 43.13 4.52
52 53 0.319083 ACCTTCGACATACGTTGCCA 59.681 50.000 0.00 0.00 43.13 4.92
53 54 1.066430 ACCTTCGACATACGTTGCCAT 60.066 47.619 0.00 0.00 43.13 4.40
54 55 1.593006 CCTTCGACATACGTTGCCATC 59.407 52.381 0.00 0.00 43.13 3.51
55 56 1.255342 CTTCGACATACGTTGCCATCG 59.745 52.381 0.00 0.00 43.13 3.84
56 57 0.526739 TCGACATACGTTGCCATCGG 60.527 55.000 0.00 0.00 43.13 4.18
57 58 1.487452 CGACATACGTTGCCATCGGG 61.487 60.000 0.00 0.00 37.22 5.14
58 59 0.461339 GACATACGTTGCCATCGGGT 60.461 55.000 0.00 0.00 36.17 5.28
59 60 0.035820 ACATACGTTGCCATCGGGTT 60.036 50.000 0.00 0.00 36.17 4.11
60 61 1.091537 CATACGTTGCCATCGGGTTT 58.908 50.000 0.00 0.00 36.17 3.27
61 62 2.281517 CATACGTTGCCATCGGGTTTA 58.718 47.619 0.00 0.00 36.17 2.01
62 63 2.695127 TACGTTGCCATCGGGTTTAT 57.305 45.000 0.00 0.00 36.17 1.40
63 64 1.375551 ACGTTGCCATCGGGTTTATC 58.624 50.000 0.00 0.00 36.17 1.75
64 65 0.303493 CGTTGCCATCGGGTTTATCG 59.697 55.000 0.00 0.00 36.17 2.92
65 66 0.661020 GTTGCCATCGGGTTTATCGG 59.339 55.000 0.00 0.00 36.17 4.18
66 67 0.253610 TTGCCATCGGGTTTATCGGT 59.746 50.000 0.00 0.00 36.17 4.69
67 68 1.121378 TGCCATCGGGTTTATCGGTA 58.879 50.000 0.00 0.00 36.17 4.02
68 69 1.069513 TGCCATCGGGTTTATCGGTAG 59.930 52.381 0.00 0.00 36.17 3.18
69 70 1.607251 GCCATCGGGTTTATCGGTAGG 60.607 57.143 0.00 0.00 36.17 3.18
70 71 1.965643 CCATCGGGTTTATCGGTAGGA 59.034 52.381 0.00 0.00 0.00 2.94
71 72 2.565834 CCATCGGGTTTATCGGTAGGAT 59.434 50.000 0.00 0.00 39.25 3.24
72 73 3.007614 CCATCGGGTTTATCGGTAGGATT 59.992 47.826 0.00 0.00 36.55 3.01
73 74 4.504340 CCATCGGGTTTATCGGTAGGATTT 60.504 45.833 0.00 0.00 36.55 2.17
74 75 4.758773 TCGGGTTTATCGGTAGGATTTT 57.241 40.909 0.00 0.00 36.55 1.82
75 76 4.444536 TCGGGTTTATCGGTAGGATTTTG 58.555 43.478 0.00 0.00 36.55 2.44
76 77 4.161942 TCGGGTTTATCGGTAGGATTTTGA 59.838 41.667 0.00 0.00 36.55 2.69
77 78 5.061179 CGGGTTTATCGGTAGGATTTTGAT 58.939 41.667 0.00 0.00 36.55 2.57
78 79 5.049680 CGGGTTTATCGGTAGGATTTTGATG 60.050 44.000 0.00 0.00 36.55 3.07
79 80 6.059484 GGGTTTATCGGTAGGATTTTGATGA 58.941 40.000 0.00 0.00 36.55 2.92
80 81 6.204882 GGGTTTATCGGTAGGATTTTGATGAG 59.795 42.308 0.00 0.00 36.55 2.90
81 82 6.766467 GGTTTATCGGTAGGATTTTGATGAGT 59.234 38.462 0.00 0.00 36.55 3.41
82 83 7.254795 GGTTTATCGGTAGGATTTTGATGAGTG 60.255 40.741 0.00 0.00 36.55 3.51
83 84 5.614324 ATCGGTAGGATTTTGATGAGTGA 57.386 39.130 0.00 0.00 28.32 3.41
84 85 5.011090 TCGGTAGGATTTTGATGAGTGAG 57.989 43.478 0.00 0.00 0.00 3.51
85 86 4.466370 TCGGTAGGATTTTGATGAGTGAGT 59.534 41.667 0.00 0.00 0.00 3.41
86 87 5.046591 TCGGTAGGATTTTGATGAGTGAGTT 60.047 40.000 0.00 0.00 0.00 3.01
87 88 5.643777 CGGTAGGATTTTGATGAGTGAGTTT 59.356 40.000 0.00 0.00 0.00 2.66
88 89 6.816640 CGGTAGGATTTTGATGAGTGAGTTTA 59.183 38.462 0.00 0.00 0.00 2.01
89 90 7.333423 CGGTAGGATTTTGATGAGTGAGTTTAA 59.667 37.037 0.00 0.00 0.00 1.52
90 91 9.178758 GGTAGGATTTTGATGAGTGAGTTTAAT 57.821 33.333 0.00 0.00 0.00 1.40
91 92 9.994432 GTAGGATTTTGATGAGTGAGTTTAATG 57.006 33.333 0.00 0.00 0.00 1.90
92 93 8.059798 AGGATTTTGATGAGTGAGTTTAATGG 57.940 34.615 0.00 0.00 0.00 3.16
93 94 7.890127 AGGATTTTGATGAGTGAGTTTAATGGA 59.110 33.333 0.00 0.00 0.00 3.41
94 95 8.186821 GGATTTTGATGAGTGAGTTTAATGGAG 58.813 37.037 0.00 0.00 0.00 3.86
95 96 8.641498 ATTTTGATGAGTGAGTTTAATGGAGT 57.359 30.769 0.00 0.00 0.00 3.85
96 97 7.439157 TTTGATGAGTGAGTTTAATGGAGTG 57.561 36.000 0.00 0.00 0.00 3.51
97 98 5.491070 TGATGAGTGAGTTTAATGGAGTGG 58.509 41.667 0.00 0.00 0.00 4.00
98 99 4.974645 TGAGTGAGTTTAATGGAGTGGT 57.025 40.909 0.00 0.00 0.00 4.16
99 100 4.641396 TGAGTGAGTTTAATGGAGTGGTG 58.359 43.478 0.00 0.00 0.00 4.17
100 101 4.346709 TGAGTGAGTTTAATGGAGTGGTGA 59.653 41.667 0.00 0.00 0.00 4.02
101 102 5.013079 TGAGTGAGTTTAATGGAGTGGTGAT 59.987 40.000 0.00 0.00 0.00 3.06
102 103 5.491982 AGTGAGTTTAATGGAGTGGTGATC 58.508 41.667 0.00 0.00 0.00 2.92
103 104 4.636206 GTGAGTTTAATGGAGTGGTGATCC 59.364 45.833 0.00 0.00 37.35 3.36
116 117 3.940209 GGTGATCCAATCAACAAAGCA 57.060 42.857 0.15 0.00 46.21 3.91
117 118 3.578688 GGTGATCCAATCAACAAAGCAC 58.421 45.455 0.15 0.00 46.21 4.40
118 119 3.005684 GGTGATCCAATCAACAAAGCACA 59.994 43.478 0.15 0.00 46.21 4.57
119 120 4.501229 GGTGATCCAATCAACAAAGCACAA 60.501 41.667 0.15 0.00 46.21 3.33
120 121 4.682860 GTGATCCAATCAACAAAGCACAAG 59.317 41.667 0.00 0.00 41.69 3.16
121 122 4.583907 TGATCCAATCAACAAAGCACAAGA 59.416 37.500 0.00 0.00 36.11 3.02
122 123 4.305989 TCCAATCAACAAAGCACAAGAC 57.694 40.909 0.00 0.00 0.00 3.01
123 124 3.044986 CCAATCAACAAAGCACAAGACG 58.955 45.455 0.00 0.00 0.00 4.18
124 125 3.243035 CCAATCAACAAAGCACAAGACGA 60.243 43.478 0.00 0.00 0.00 4.20
125 126 3.885484 ATCAACAAAGCACAAGACGAG 57.115 42.857 0.00 0.00 0.00 4.18
126 127 2.899976 TCAACAAAGCACAAGACGAGA 58.100 42.857 0.00 0.00 0.00 4.04
127 128 2.607635 TCAACAAAGCACAAGACGAGAC 59.392 45.455 0.00 0.00 0.00 3.36
128 129 1.209128 ACAAAGCACAAGACGAGACG 58.791 50.000 0.00 0.00 0.00 4.18
129 130 1.209128 CAAAGCACAAGACGAGACGT 58.791 50.000 0.00 0.00 45.10 4.34
130 131 1.071239 CAAAGCACAAGACGAGACGTG 60.071 52.381 0.00 0.00 41.37 4.49
131 132 2.846918 GCACAAGACGAGACGTGC 59.153 61.111 0.00 8.50 46.85 5.34
132 133 2.988549 GCACAAGACGAGACGTGCG 61.989 63.158 0.00 0.00 44.54 5.34
133 134 2.729862 ACAAGACGAGACGTGCGC 60.730 61.111 0.00 0.00 41.37 6.09
134 135 3.470567 CAAGACGAGACGTGCGCC 61.471 66.667 4.18 0.00 41.37 6.53
135 136 3.671411 AAGACGAGACGTGCGCCT 61.671 61.111 4.18 0.00 41.37 5.52
136 137 3.612371 AAGACGAGACGTGCGCCTC 62.612 63.158 4.18 2.67 41.37 4.70
144 145 4.717629 CGTGCGCCTCGTCTCCAA 62.718 66.667 4.18 0.00 0.00 3.53
151 152 1.157585 GCCTCGTCTCCAAAAACCTC 58.842 55.000 0.00 0.00 0.00 3.85
152 153 1.270893 GCCTCGTCTCCAAAAACCTCT 60.271 52.381 0.00 0.00 0.00 3.69
184 185 1.002134 CCGCCACATCCTCCTTTGT 60.002 57.895 0.00 0.00 0.00 2.83
191 192 1.566231 ACATCCTCCTTTGTCCCCATC 59.434 52.381 0.00 0.00 0.00 3.51
192 193 1.133668 CATCCTCCTTTGTCCCCATCC 60.134 57.143 0.00 0.00 0.00 3.51
216 217 1.095600 CGTCGTCCTCCTTGATCTCA 58.904 55.000 0.00 0.00 0.00 3.27
217 218 1.202200 CGTCGTCCTCCTTGATCTCAC 60.202 57.143 0.00 0.00 0.00 3.51
218 219 1.135333 GTCGTCCTCCTTGATCTCACC 59.865 57.143 0.00 0.00 0.00 4.02
248 249 2.941064 CCAACATGGTGCATGACTAGAG 59.059 50.000 4.81 0.00 43.81 2.43
254 255 1.410882 GGTGCATGACTAGAGTCCCTC 59.589 57.143 7.21 0.00 44.15 4.30
258 259 0.820074 ATGACTAGAGTCCCTCGGCG 60.820 60.000 0.00 0.00 44.15 6.46
260 261 1.716826 GACTAGAGTCCCTCGGCGTG 61.717 65.000 6.85 3.87 39.07 5.34
261 262 2.439701 TAGAGTCCCTCGGCGTGG 60.440 66.667 20.44 20.44 35.36 4.94
279 280 3.159298 GCATTCGCCTTCTCCTTCA 57.841 52.632 0.00 0.00 0.00 3.02
283 284 3.742640 GCATTCGCCTTCTCCTTCATAGT 60.743 47.826 0.00 0.00 0.00 2.12
285 286 2.457598 TCGCCTTCTCCTTCATAGTGT 58.542 47.619 0.00 0.00 0.00 3.55
295 296 2.962421 CCTTCATAGTGTCTCCTCCTCC 59.038 54.545 0.00 0.00 0.00 4.30
305 306 0.998945 CTCCTCCTCCTCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
307 308 1.236708 CCTCCTCCTCCTCTCCCTTA 58.763 60.000 0.00 0.00 0.00 2.69
308 309 1.133294 CCTCCTCCTCCTCTCCCTTAC 60.133 61.905 0.00 0.00 0.00 2.34
317 318 0.680061 CTCTCCCTTACGGCATACCC 59.320 60.000 0.00 0.00 0.00 3.69
320 321 0.325860 TCCCTTACGGCATACCCTGT 60.326 55.000 0.00 0.00 0.00 4.00
323 324 2.037144 CCTTACGGCATACCCTGTACT 58.963 52.381 0.00 0.00 0.00 2.73
327 328 0.389391 CGGCATACCCTGTACTCTGG 59.611 60.000 0.00 0.00 0.00 3.86
335 336 3.591789 ACCCTGTACTCTGGCATCATAT 58.408 45.455 0.00 0.00 0.00 1.78
342 343 4.508551 ACTCTGGCATCATATTGTGGAA 57.491 40.909 0.00 0.00 0.00 3.53
343 344 4.858850 ACTCTGGCATCATATTGTGGAAA 58.141 39.130 0.00 0.00 0.00 3.13
346 347 2.098934 TGGCATCATATTGTGGAAACGC 59.901 45.455 0.00 0.00 42.66 4.84
372 373 2.552373 GGAGGCGGTTGGATTATAAGGG 60.552 54.545 0.00 0.00 0.00 3.95
373 374 1.202891 AGGCGGTTGGATTATAAGGGC 60.203 52.381 0.00 0.00 0.00 5.19
383 384 0.469705 TTATAAGGGCGGCGGAGGTA 60.470 55.000 9.78 0.00 0.00 3.08
403 404 2.551270 AGAAGTTGAGGCATAGGGTGA 58.449 47.619 0.00 0.00 0.00 4.02
405 406 3.054802 AGAAGTTGAGGCATAGGGTGAAG 60.055 47.826 0.00 0.00 0.00 3.02
410 411 1.694696 GAGGCATAGGGTGAAGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
422 423 1.214992 AAGGTAGGGGGCTTTGGAGG 61.215 60.000 0.00 0.00 0.00 4.30
423 424 2.690734 GGTAGGGGGCTTTGGAGGG 61.691 68.421 0.00 0.00 0.00 4.30
430 431 2.539081 GGCTTTGGAGGGGAGGTGT 61.539 63.158 0.00 0.00 0.00 4.16
435 436 0.696143 TTGGAGGGGAGGTGTGTGAA 60.696 55.000 0.00 0.00 0.00 3.18
442 443 3.655777 AGGGGAGGTGTGTGAAAAATAGA 59.344 43.478 0.00 0.00 0.00 1.98
463 464 1.204467 CCCATGCCAACAATAACGCTT 59.796 47.619 0.00 0.00 0.00 4.68
465 466 3.068024 CCCATGCCAACAATAACGCTTAT 59.932 43.478 0.00 0.00 0.00 1.73
477 478 7.137426 ACAATAACGCTTATTAGAGTAGGACG 58.863 38.462 0.00 0.00 32.90 4.79
495 496 1.750399 GCGCAGGGATGACAACCAT 60.750 57.895 0.30 0.00 38.43 3.55
509 511 0.839946 AACCATCCATCCCTTCCTCG 59.160 55.000 0.00 0.00 0.00 4.63
510 512 0.326618 ACCATCCATCCCTTCCTCGT 60.327 55.000 0.00 0.00 0.00 4.18
541 543 3.067833 GTCCACTGCTAGACCAAAGTTC 58.932 50.000 0.00 0.00 0.00 3.01
544 546 3.260884 CCACTGCTAGACCAAAGTTCCTA 59.739 47.826 0.00 0.00 0.00 2.94
593 595 7.013274 ACGGGAATGAATTACCACATATTTCAG 59.987 37.037 5.16 0.00 41.04 3.02
653 655 2.084546 CCGGCTAAGAGGGTGAAAAAG 58.915 52.381 0.00 0.00 0.00 2.27
672 677 0.179240 GACACGAGCACATGAAAGCG 60.179 55.000 0.00 0.19 35.48 4.68
677 682 1.070975 CGAGCACATGAAAGCGCTATC 60.071 52.381 12.05 0.00 34.12 2.08
692 697 6.064846 AGCGCTATCCATTCAACATTTTAG 57.935 37.500 8.99 0.00 0.00 1.85
741 746 5.614308 ACTCTCACAAAGTCACAATGATGA 58.386 37.500 0.00 0.00 0.00 2.92
924 935 3.362706 CCAGATACCGCTAGCCCTAATA 58.637 50.000 9.66 0.00 0.00 0.98
979 995 1.827399 AAATCTCCACGACCAGCCGT 61.827 55.000 0.00 0.00 44.43 5.68
1381 1442 5.040635 CGGTTGCTAACTTGTTTGTTGATT 58.959 37.500 0.00 0.00 0.00 2.57
1472 1533 0.966179 ATTCCAACCCTTTTGGCGAC 59.034 50.000 0.00 0.00 39.38 5.19
1541 1604 4.191033 ACATTACACATTGCATTGGTGG 57.809 40.909 12.87 4.94 36.87 4.61
1623 1686 2.355716 CCTTTGATGCCCTAGAACCGAA 60.356 50.000 0.00 0.00 0.00 4.30
1672 1735 7.933577 CCTATTGCTCTGAATCTGTTATAACCA 59.066 37.037 13.01 2.65 0.00 3.67
1673 1736 6.985188 TTGCTCTGAATCTGTTATAACCAC 57.015 37.500 13.01 1.42 0.00 4.16
1694 1757 1.243902 TAAAGTTTGGGCTTCTGGCG 58.756 50.000 0.00 0.00 42.94 5.69
1700 1763 4.704833 GGGCTTCTGGCGTCTGCA 62.705 66.667 0.00 0.00 45.35 4.41
1726 1789 6.448207 TTGACAGTGTGAAATTTGTGATGA 57.552 33.333 0.00 0.00 0.00 2.92
1818 2006 7.973388 TGCATATGCTGTAGGAAATAACAAAAC 59.027 33.333 27.13 0.00 42.66 2.43
1831 2019 3.349488 AACAAAACGTTCTTGGCTAGC 57.651 42.857 19.92 6.04 29.27 3.42
1833 2021 1.263217 CAAAACGTTCTTGGCTAGCGT 59.737 47.619 9.00 0.00 37.38 5.07
1838 2026 1.132643 CGTTCTTGGCTAGCGTACTCT 59.867 52.381 9.00 0.00 0.00 3.24
1924 2113 6.156519 GTGCCAAGGTGGTTTATCTTTTTAG 58.843 40.000 0.00 0.00 40.46 1.85
2030 2219 3.071602 GCTCAGGGTTAGAATAGATGCCA 59.928 47.826 0.00 0.00 0.00 4.92
2181 2371 8.103305 AGATCAAGTTTATTTCCTCAGTTAGCA 58.897 33.333 0.00 0.00 0.00 3.49
2251 2441 6.126739 GGGTCCACTCTTTAGGATTGTCTATT 60.127 42.308 0.00 0.00 36.11 1.73
2323 2514 3.045634 TGTCCTCAGAAGACCCTTTTCA 58.954 45.455 0.00 0.00 33.09 2.69
2469 2661 9.636789 TTGTAGGTTATATAGTCTAACTGCTGA 57.363 33.333 0.00 0.00 31.26 4.26
2627 2822 5.062934 TCGGTACAAGAAAATATTGACTGCG 59.937 40.000 0.00 0.00 0.00 5.18
2747 2942 7.020827 ACTCTCAAATCTGAACCTTATTCCA 57.979 36.000 0.00 0.00 0.00 3.53
2817 3012 2.887152 GCAGAAGGTGGACATTTCTGTT 59.113 45.455 20.55 0.00 45.93 3.16
2948 3143 6.836527 AGTATCACTGCTATACTTCCTGAACT 59.163 38.462 0.00 0.00 36.92 3.01
3064 3259 7.373617 TCACCAGATTAGCATTATGTTCCTA 57.626 36.000 0.00 0.00 0.00 2.94
3251 3830 3.439857 AGTGTAAACATGTGCCTCCAT 57.560 42.857 0.00 0.00 0.00 3.41
3316 6055 1.615392 GGGCCATTGGTCTTATGCATC 59.385 52.381 0.19 0.00 0.00 3.91
3317 6056 2.590821 GGCCATTGGTCTTATGCATCT 58.409 47.619 0.19 0.00 0.00 2.90
3674 6428 4.284746 GGAGAAGAAAGAGGAAGAGGTTCA 59.715 45.833 0.00 0.00 33.93 3.18
3733 6488 8.296000 TGTTGAACTAACATGTGTCCATTATTG 58.704 33.333 0.00 0.00 44.07 1.90
3912 6900 6.995511 TGGTGTTCAAGGTATATACAAAGC 57.004 37.500 14.70 0.00 0.00 3.51
4069 7061 7.349598 ACCTATTCAGCCTTGACAATAGAATT 58.650 34.615 8.73 0.00 30.61 2.17
4070 7062 7.284034 ACCTATTCAGCCTTGACAATAGAATTG 59.716 37.037 8.73 0.00 30.61 2.32
4286 7321 3.050619 CACTGAAACTACACCGACACTC 58.949 50.000 0.00 0.00 0.00 3.51
4297 7332 4.255301 ACACCGACACTCTTTGTTGTTTA 58.745 39.130 0.00 0.00 39.17 2.01
4406 7448 0.106149 CCCCGTTGTATGCTCCCTAC 59.894 60.000 0.00 0.00 0.00 3.18
4671 7854 5.409520 TCCAAACTTGACAGATTTGAGATCG 59.590 40.000 12.66 0.00 35.73 3.69
5082 17332 4.997395 CCTGAATATTGTTCGTCCCATAGG 59.003 45.833 0.00 0.00 0.00 2.57
5155 17408 5.828859 TGAGCTAAATAGTACTCCCTCTGTC 59.171 44.000 0.00 0.00 0.00 3.51
5159 17412 4.561254 AATAGTACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
5165 17418 7.358255 AGTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
5168 17421 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
5170 17423 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
5171 17424 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
5172 17425 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
5201 17454 4.004196 ACTAGTGTAGTGTCCAAAAGGC 57.996 45.455 0.00 0.00 37.69 4.35
5205 17458 3.136626 AGTGTAGTGTCCAAAAGGCTCTT 59.863 43.478 0.00 0.00 0.00 2.85
5207 17460 5.013183 AGTGTAGTGTCCAAAAGGCTCTTAT 59.987 40.000 0.00 0.00 0.00 1.73
5208 17461 6.212791 AGTGTAGTGTCCAAAAGGCTCTTATA 59.787 38.462 0.00 0.00 0.00 0.98
5213 17466 8.682936 AGTGTCCAAAAGGCTCTTATATTATG 57.317 34.615 0.00 0.00 0.00 1.90
5214 17467 7.721399 AGTGTCCAAAAGGCTCTTATATTATGG 59.279 37.037 0.00 0.00 0.00 2.74
5215 17468 7.004086 TGTCCAAAAGGCTCTTATATTATGGG 58.996 38.462 0.00 0.00 0.00 4.00
5219 17494 6.681729 AAAGGCTCTTATATTATGGGACGA 57.318 37.500 0.00 0.00 0.00 4.20
5295 17572 9.601971 CATTTTCTATTTGGCAAAAAGATTGTG 57.398 29.630 17.70 8.05 0.00 3.33
5450 17842 7.636259 ATTTCGTTTCATGGTTGTATGTTTG 57.364 32.000 0.00 0.00 0.00 2.93
6016 19656 9.462606 TCTCTAACTATCTGAACATACAGTTGA 57.537 33.333 0.00 0.00 41.51 3.18
6213 19870 2.322355 AAAGAGGAGGATGTGATGCG 57.678 50.000 0.00 0.00 0.00 4.73
6362 20042 7.835822 ACCTATAGAACATATAGCTGAAGCAG 58.164 38.462 4.90 0.00 45.16 4.24
6400 20080 2.114616 GAGGAAGATGGCTCCTTCTCA 58.885 52.381 15.32 0.00 39.80 3.27
6705 20402 8.781951 TCCACCAAGATCTTAGGATAATCTTTT 58.218 33.333 22.86 2.99 37.59 2.27
6805 20502 3.244700 GCTAATGCATCCTAGGACCACAT 60.245 47.826 15.42 14.79 39.41 3.21
6816 20513 7.801893 TCCTAGGACCACATACTTCTTTTAA 57.198 36.000 7.62 0.00 0.00 1.52
6917 20614 8.392372 AGTTCTAAGGTTATTTTGGAACACTC 57.608 34.615 13.94 0.00 43.96 3.51
6929 20626 6.639671 TTTGGAACACTCAAAACGATTTTG 57.360 33.333 13.58 13.58 45.01 2.44
7275 20973 4.406456 TGCCTTCTGGACACAAACAATAT 58.594 39.130 0.00 0.00 34.57 1.28
7277 20975 5.163513 GCCTTCTGGACACAAACAATATTG 58.836 41.667 14.01 14.01 34.17 1.90
7934 22835 5.497474 ACGAGGATATTGTAAGCCTTTTGT 58.503 37.500 0.00 0.00 0.00 2.83
8008 24856 1.214175 TCTGGTTTTCCTTGGCAGTCA 59.786 47.619 0.00 0.00 41.38 3.41
8147 24996 5.063880 AGATACCACACAACAGAAAGAACC 58.936 41.667 0.00 0.00 0.00 3.62
8148 24997 3.080300 ACCACACAACAGAAAGAACCA 57.920 42.857 0.00 0.00 0.00 3.67
8189 25047 9.495572 CTATTAGAAGTTGGTTCTCTGTTTCTT 57.504 33.333 0.00 0.00 42.26 2.52
8206 25065 2.473816 TCTTGCTTGAGAGTGTGTTCG 58.526 47.619 0.00 0.00 0.00 3.95
8209 25068 3.660501 TGCTTGAGAGTGTGTTCGTAT 57.339 42.857 0.00 0.00 0.00 3.06
8223 25082 0.399454 TCGTATAGGCTAGCTCCCGT 59.601 55.000 15.72 0.00 0.00 5.28
8224 25083 0.522180 CGTATAGGCTAGCTCCCGTG 59.478 60.000 15.72 0.00 0.00 4.94
8251 25110 1.781786 AGTCATCCGAGTAGGCATGT 58.218 50.000 0.00 0.00 40.77 3.21
8348 25207 4.943705 TGCTACCTTGATTTGAATGGAGAC 59.056 41.667 0.00 0.00 0.00 3.36
8436 25320 7.037730 TGTGGGATGGATATTTTTGAAACCAAT 60.038 33.333 0.00 0.00 0.00 3.16
8565 25459 7.428826 ACATCTTCAAAGTGGATGAAAGAAAC 58.571 34.615 8.80 0.00 39.12 2.78
8600 25497 2.123342 CATCTGTCCTCGCGATCTTTC 58.877 52.381 10.36 0.00 0.00 2.62
8612 25545 6.128145 CCTCGCGATCTTTCTATCTTATCTGA 60.128 42.308 10.36 0.00 0.00 3.27
8618 25551 9.393249 CGATCTTTCTATCTTATCTGAGTTGTC 57.607 37.037 0.00 0.00 0.00 3.18
8626 25559 9.258826 CTATCTTATCTGAGTTGTCATCTTTGG 57.741 37.037 0.00 0.00 30.18 3.28
8649 25585 7.390823 TGGCTTTGTATCTTATCTGTGTTGTA 58.609 34.615 0.00 0.00 0.00 2.41
8801 25739 4.764679 TGATTGTGTGCTAACATGGTTC 57.235 40.909 0.00 0.00 38.92 3.62
8842 25780 3.752359 TGCCTACTAACTACACCCTCT 57.248 47.619 0.00 0.00 0.00 3.69
8923 25863 5.450171 CAGTCTGATGCTTTTGAGAAGTTG 58.550 41.667 0.00 0.00 0.00 3.16
8949 25916 5.594317 ACTCCTTTGAAGCAACAACACTATT 59.406 36.000 0.00 0.00 0.00 1.73
8962 25929 4.578928 ACAACACTATTGGAACTTGTGTCC 59.421 41.667 0.00 0.00 40.41 4.02
9013 25981 7.060383 TGAGAACTCTGAAAACTCTTCTGAT 57.940 36.000 3.51 0.00 0.00 2.90
9090 26058 1.003580 CTGAAGCCTAAGTCCAAGCCA 59.996 52.381 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.749818 TTTGTCACCACCATGCGTGT 60.750 50.000 4.96 0.00 41.26 4.49
4 5 0.040157 CACTTTGTCACCACCATGCG 60.040 55.000 0.00 0.00 0.00 4.73
6 7 1.881973 CTCCACTTTGTCACCACCATG 59.118 52.381 0.00 0.00 0.00 3.66
7 8 1.202927 CCTCCACTTTGTCACCACCAT 60.203 52.381 0.00 0.00 0.00 3.55
8 9 0.182537 CCTCCACTTTGTCACCACCA 59.817 55.000 0.00 0.00 0.00 4.17
9 10 0.472471 TCCTCCACTTTGTCACCACC 59.528 55.000 0.00 0.00 0.00 4.61
10 11 1.947456 GTTCCTCCACTTTGTCACCAC 59.053 52.381 0.00 0.00 0.00 4.16
11 12 1.562008 TGTTCCTCCACTTTGTCACCA 59.438 47.619 0.00 0.00 0.00 4.17
12 13 1.947456 GTGTTCCTCCACTTTGTCACC 59.053 52.381 0.00 0.00 32.50 4.02
13 14 2.354821 GTGTGTTCCTCCACTTTGTCAC 59.645 50.000 0.00 0.00 36.30 3.67
14 15 2.639065 GTGTGTTCCTCCACTTTGTCA 58.361 47.619 0.00 0.00 36.30 3.58
15 16 1.947456 GGTGTGTTCCTCCACTTTGTC 59.053 52.381 0.00 0.00 36.30 3.18
16 17 1.564348 AGGTGTGTTCCTCCACTTTGT 59.436 47.619 0.00 0.00 36.30 2.83
17 18 2.348411 AGGTGTGTTCCTCCACTTTG 57.652 50.000 0.00 0.00 36.30 2.77
18 19 2.745152 CGAAGGTGTGTTCCTCCACTTT 60.745 50.000 0.00 0.00 36.74 2.66
19 20 1.202651 CGAAGGTGTGTTCCTCCACTT 60.203 52.381 0.00 0.00 36.74 3.16
20 21 0.393077 CGAAGGTGTGTTCCTCCACT 59.607 55.000 0.00 0.00 36.74 4.00
21 22 0.391597 TCGAAGGTGTGTTCCTCCAC 59.608 55.000 0.00 0.00 36.74 4.02
22 23 0.391597 GTCGAAGGTGTGTTCCTCCA 59.608 55.000 0.00 0.00 36.74 3.86
23 24 0.391597 TGTCGAAGGTGTGTTCCTCC 59.608 55.000 0.00 0.00 36.74 4.30
24 25 2.457366 ATGTCGAAGGTGTGTTCCTC 57.543 50.000 0.00 0.00 36.74 3.71
25 26 2.352421 CGTATGTCGAAGGTGTGTTCCT 60.352 50.000 0.00 0.00 42.86 3.36
26 27 1.990563 CGTATGTCGAAGGTGTGTTCC 59.009 52.381 0.00 0.00 42.86 3.62
27 28 2.669364 ACGTATGTCGAAGGTGTGTTC 58.331 47.619 0.00 0.00 42.86 3.18
28 29 2.798283 CAACGTATGTCGAAGGTGTGTT 59.202 45.455 0.00 0.00 42.86 3.32
29 30 2.400399 CAACGTATGTCGAAGGTGTGT 58.600 47.619 0.00 0.00 42.86 3.72
30 31 1.126113 GCAACGTATGTCGAAGGTGTG 59.874 52.381 0.00 0.00 42.86 3.82
31 32 1.425412 GCAACGTATGTCGAAGGTGT 58.575 50.000 0.00 0.00 42.86 4.16
32 33 0.719465 GGCAACGTATGTCGAAGGTG 59.281 55.000 0.00 0.00 42.86 4.00
33 34 0.319083 TGGCAACGTATGTCGAAGGT 59.681 50.000 0.00 0.00 42.86 3.50
34 35 1.593006 GATGGCAACGTATGTCGAAGG 59.407 52.381 0.00 0.00 42.86 3.46
35 36 1.255342 CGATGGCAACGTATGTCGAAG 59.745 52.381 9.16 0.00 42.86 3.79
36 37 1.273688 CGATGGCAACGTATGTCGAA 58.726 50.000 9.16 0.00 42.86 3.71
37 38 0.526739 CCGATGGCAACGTATGTCGA 60.527 55.000 16.03 0.00 42.86 4.20
38 39 1.487452 CCCGATGGCAACGTATGTCG 61.487 60.000 16.03 6.91 46.00 4.35
39 40 0.461339 ACCCGATGGCAACGTATGTC 60.461 55.000 16.03 0.00 42.51 3.06
40 41 0.035820 AACCCGATGGCAACGTATGT 60.036 50.000 16.03 7.31 42.51 2.29
41 42 1.091537 AAACCCGATGGCAACGTATG 58.908 50.000 16.03 6.71 42.51 2.39
42 43 2.695127 TAAACCCGATGGCAACGTAT 57.305 45.000 16.03 0.51 42.51 3.06
43 44 2.553086 GATAAACCCGATGGCAACGTA 58.447 47.619 16.03 2.24 42.51 3.57
44 45 1.375551 GATAAACCCGATGGCAACGT 58.624 50.000 16.03 0.00 42.51 3.99
45 46 0.303493 CGATAAACCCGATGGCAACG 59.697 55.000 10.45 10.45 42.51 4.10
46 47 0.661020 CCGATAAACCCGATGGCAAC 59.339 55.000 0.00 0.00 33.59 4.17
47 48 0.253610 ACCGATAAACCCGATGGCAA 59.746 50.000 0.00 0.00 33.59 4.52
48 49 1.069513 CTACCGATAAACCCGATGGCA 59.930 52.381 0.00 0.00 33.59 4.92
49 50 1.607251 CCTACCGATAAACCCGATGGC 60.607 57.143 0.00 0.00 33.59 4.40
50 51 1.965643 TCCTACCGATAAACCCGATGG 59.034 52.381 0.00 0.00 37.80 3.51
51 52 3.955650 ATCCTACCGATAAACCCGATG 57.044 47.619 0.00 0.00 0.00 3.84
52 53 4.968971 AAATCCTACCGATAAACCCGAT 57.031 40.909 0.00 0.00 0.00 4.18
53 54 4.161942 TCAAAATCCTACCGATAAACCCGA 59.838 41.667 0.00 0.00 0.00 5.14
54 55 4.444536 TCAAAATCCTACCGATAAACCCG 58.555 43.478 0.00 0.00 0.00 5.28
55 56 6.059484 TCATCAAAATCCTACCGATAAACCC 58.941 40.000 0.00 0.00 0.00 4.11
56 57 6.766467 ACTCATCAAAATCCTACCGATAAACC 59.234 38.462 0.00 0.00 0.00 3.27
57 58 7.494625 TCACTCATCAAAATCCTACCGATAAAC 59.505 37.037 0.00 0.00 0.00 2.01
58 59 7.561251 TCACTCATCAAAATCCTACCGATAAA 58.439 34.615 0.00 0.00 0.00 1.40
59 60 7.119709 TCACTCATCAAAATCCTACCGATAA 57.880 36.000 0.00 0.00 0.00 1.75
60 61 6.323996 ACTCACTCATCAAAATCCTACCGATA 59.676 38.462 0.00 0.00 0.00 2.92
61 62 5.129485 ACTCACTCATCAAAATCCTACCGAT 59.871 40.000 0.00 0.00 0.00 4.18
62 63 4.466370 ACTCACTCATCAAAATCCTACCGA 59.534 41.667 0.00 0.00 0.00 4.69
63 64 4.759782 ACTCACTCATCAAAATCCTACCG 58.240 43.478 0.00 0.00 0.00 4.02
64 65 8.561738 TTAAACTCACTCATCAAAATCCTACC 57.438 34.615 0.00 0.00 0.00 3.18
65 66 9.994432 CATTAAACTCACTCATCAAAATCCTAC 57.006 33.333 0.00 0.00 0.00 3.18
66 67 9.177608 CCATTAAACTCACTCATCAAAATCCTA 57.822 33.333 0.00 0.00 0.00 2.94
67 68 7.890127 TCCATTAAACTCACTCATCAAAATCCT 59.110 33.333 0.00 0.00 0.00 3.24
68 69 8.055279 TCCATTAAACTCACTCATCAAAATCC 57.945 34.615 0.00 0.00 0.00 3.01
69 70 8.734386 ACTCCATTAAACTCACTCATCAAAATC 58.266 33.333 0.00 0.00 0.00 2.17
70 71 8.517878 CACTCCATTAAACTCACTCATCAAAAT 58.482 33.333 0.00 0.00 0.00 1.82
71 72 7.040478 CCACTCCATTAAACTCACTCATCAAAA 60.040 37.037 0.00 0.00 0.00 2.44
72 73 6.430925 CCACTCCATTAAACTCACTCATCAAA 59.569 38.462 0.00 0.00 0.00 2.69
73 74 5.939883 CCACTCCATTAAACTCACTCATCAA 59.060 40.000 0.00 0.00 0.00 2.57
74 75 5.013079 ACCACTCCATTAAACTCACTCATCA 59.987 40.000 0.00 0.00 0.00 3.07
75 76 5.352569 CACCACTCCATTAAACTCACTCATC 59.647 44.000 0.00 0.00 0.00 2.92
76 77 5.013079 TCACCACTCCATTAAACTCACTCAT 59.987 40.000 0.00 0.00 0.00 2.90
77 78 4.346709 TCACCACTCCATTAAACTCACTCA 59.653 41.667 0.00 0.00 0.00 3.41
78 79 4.894784 TCACCACTCCATTAAACTCACTC 58.105 43.478 0.00 0.00 0.00 3.51
79 80 4.974645 TCACCACTCCATTAAACTCACT 57.025 40.909 0.00 0.00 0.00 3.41
80 81 4.636206 GGATCACCACTCCATTAAACTCAC 59.364 45.833 0.00 0.00 35.97 3.51
81 82 4.288366 TGGATCACCACTCCATTAAACTCA 59.712 41.667 0.00 0.00 41.77 3.41
82 83 4.843728 TGGATCACCACTCCATTAAACTC 58.156 43.478 0.00 0.00 41.77 3.01
83 84 4.927267 TGGATCACCACTCCATTAAACT 57.073 40.909 0.00 0.00 41.77 2.66
84 85 5.652014 TGATTGGATCACCACTCCATTAAAC 59.348 40.000 0.00 0.00 46.80 2.01
85 86 5.825532 TGATTGGATCACCACTCCATTAAA 58.174 37.500 0.00 0.00 46.80 1.52
86 87 5.449297 TGATTGGATCACCACTCCATTAA 57.551 39.130 0.00 0.00 46.80 1.40
87 88 5.192927 GTTGATTGGATCACCACTCCATTA 58.807 41.667 0.00 0.00 46.80 1.90
88 89 4.019174 GTTGATTGGATCACCACTCCATT 58.981 43.478 0.00 0.00 46.80 3.16
89 90 3.010472 TGTTGATTGGATCACCACTCCAT 59.990 43.478 0.00 0.00 46.80 3.41
90 91 2.374839 TGTTGATTGGATCACCACTCCA 59.625 45.455 0.00 0.00 46.80 3.86
91 92 3.071874 TGTTGATTGGATCACCACTCC 57.928 47.619 0.00 0.00 46.80 3.85
92 93 4.616835 GCTTTGTTGATTGGATCACCACTC 60.617 45.833 0.00 0.00 46.80 3.51
93 94 3.256631 GCTTTGTTGATTGGATCACCACT 59.743 43.478 0.00 0.00 46.80 4.00
94 95 3.005684 TGCTTTGTTGATTGGATCACCAC 59.994 43.478 0.00 0.00 46.80 4.16
95 96 3.005684 GTGCTTTGTTGATTGGATCACCA 59.994 43.478 0.00 0.00 45.34 4.17
96 97 3.005684 TGTGCTTTGTTGATTGGATCACC 59.994 43.478 0.00 0.00 39.39 4.02
97 98 4.241590 TGTGCTTTGTTGATTGGATCAC 57.758 40.909 0.00 0.00 39.39 3.06
98 99 4.583907 TCTTGTGCTTTGTTGATTGGATCA 59.416 37.500 0.00 0.00 37.55 2.92
99 100 4.919754 GTCTTGTGCTTTGTTGATTGGATC 59.080 41.667 0.00 0.00 0.00 3.36
100 101 4.557296 CGTCTTGTGCTTTGTTGATTGGAT 60.557 41.667 0.00 0.00 0.00 3.41
101 102 3.243035 CGTCTTGTGCTTTGTTGATTGGA 60.243 43.478 0.00 0.00 0.00 3.53
102 103 3.044986 CGTCTTGTGCTTTGTTGATTGG 58.955 45.455 0.00 0.00 0.00 3.16
103 104 3.951306 TCGTCTTGTGCTTTGTTGATTG 58.049 40.909 0.00 0.00 0.00 2.67
104 105 3.876914 TCTCGTCTTGTGCTTTGTTGATT 59.123 39.130 0.00 0.00 0.00 2.57
105 106 3.248602 GTCTCGTCTTGTGCTTTGTTGAT 59.751 43.478 0.00 0.00 0.00 2.57
106 107 2.607635 GTCTCGTCTTGTGCTTTGTTGA 59.392 45.455 0.00 0.00 0.00 3.18
107 108 2.597505 CGTCTCGTCTTGTGCTTTGTTG 60.598 50.000 0.00 0.00 0.00 3.33
108 109 1.593006 CGTCTCGTCTTGTGCTTTGTT 59.407 47.619 0.00 0.00 0.00 2.83
109 110 1.209128 CGTCTCGTCTTGTGCTTTGT 58.791 50.000 0.00 0.00 0.00 2.83
110 111 1.071239 CACGTCTCGTCTTGTGCTTTG 60.071 52.381 0.00 0.00 38.32 2.77
111 112 1.209128 CACGTCTCGTCTTGTGCTTT 58.791 50.000 0.00 0.00 38.32 3.51
112 113 2.886859 CACGTCTCGTCTTGTGCTT 58.113 52.632 0.00 0.00 38.32 3.91
113 114 4.635925 CACGTCTCGTCTTGTGCT 57.364 55.556 0.00 0.00 38.32 4.40
115 116 2.988549 GCGCACGTCTCGTCTTGTG 61.989 63.158 0.30 0.00 38.32 3.33
116 117 2.729862 GCGCACGTCTCGTCTTGT 60.730 61.111 0.30 0.00 38.32 3.16
117 118 3.470567 GGCGCACGTCTCGTCTTG 61.471 66.667 10.83 0.00 38.32 3.02
118 119 3.612371 GAGGCGCACGTCTCGTCTT 62.612 63.158 10.83 1.60 42.41 3.01
119 120 4.104417 GAGGCGCACGTCTCGTCT 62.104 66.667 10.83 12.85 45.28 4.18
127 128 4.717629 TTGGAGACGAGGCGCACG 62.718 66.667 20.93 20.93 0.00 5.34
128 129 1.503818 TTTTTGGAGACGAGGCGCAC 61.504 55.000 10.83 0.96 0.00 5.34
129 130 1.227704 TTTTTGGAGACGAGGCGCA 60.228 52.632 10.83 0.00 0.00 6.09
130 131 1.206831 GTTTTTGGAGACGAGGCGC 59.793 57.895 0.00 0.00 0.00 6.53
131 132 0.602905 AGGTTTTTGGAGACGAGGCG 60.603 55.000 0.00 0.00 0.00 5.52
132 133 1.157585 GAGGTTTTTGGAGACGAGGC 58.842 55.000 0.00 0.00 0.00 4.70
133 134 2.841442 AGAGGTTTTTGGAGACGAGG 57.159 50.000 0.00 0.00 0.00 4.63
134 135 3.988517 GTGTAGAGGTTTTTGGAGACGAG 59.011 47.826 0.00 0.00 0.00 4.18
135 136 3.640029 AGTGTAGAGGTTTTTGGAGACGA 59.360 43.478 0.00 0.00 0.00 4.20
136 137 3.991367 AGTGTAGAGGTTTTTGGAGACG 58.009 45.455 0.00 0.00 0.00 4.18
137 138 5.236282 GGTAGTGTAGAGGTTTTTGGAGAC 58.764 45.833 0.00 0.00 0.00 3.36
144 145 4.332828 GCATTGGGTAGTGTAGAGGTTTT 58.667 43.478 0.00 0.00 0.00 2.43
151 152 0.814010 GGCGGCATTGGGTAGTGTAG 60.814 60.000 3.07 0.00 0.00 2.74
152 153 1.222387 GGCGGCATTGGGTAGTGTA 59.778 57.895 3.07 0.00 0.00 2.90
192 193 3.441290 AAGGAGGACGACGAGGCG 61.441 66.667 0.00 0.00 37.29 5.52
216 217 1.599047 CATGTTGGAGCTCCTCGGT 59.401 57.895 32.28 14.09 36.82 4.69
217 218 1.153289 CCATGTTGGAGCTCCTCGG 60.153 63.158 32.28 20.23 40.96 4.63
218 219 0.742281 CACCATGTTGGAGCTCCTCG 60.742 60.000 32.28 15.71 40.96 4.63
248 249 4.778143 AATGCCACGCCGAGGGAC 62.778 66.667 2.03 0.00 0.00 4.46
261 262 1.673168 ATGAAGGAGAAGGCGAATGC 58.327 50.000 0.00 0.00 41.71 3.56
263 264 3.452627 ACACTATGAAGGAGAAGGCGAAT 59.547 43.478 0.00 0.00 0.00 3.34
279 280 2.445525 GAGGAGGAGGAGGAGACACTAT 59.554 54.545 0.00 0.00 0.00 2.12
283 284 0.923358 GAGAGGAGGAGGAGGAGACA 59.077 60.000 0.00 0.00 0.00 3.41
285 286 0.996762 GGGAGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
305 306 2.691526 CAGAGTACAGGGTATGCCGTAA 59.308 50.000 0.00 0.00 34.97 3.18
307 308 1.112113 CAGAGTACAGGGTATGCCGT 58.888 55.000 0.00 0.00 34.97 5.68
308 309 0.389391 CCAGAGTACAGGGTATGCCG 59.611 60.000 0.00 0.00 34.97 5.69
317 318 4.753610 CCACAATATGATGCCAGAGTACAG 59.246 45.833 0.00 0.00 0.00 2.74
320 321 5.628797 TTCCACAATATGATGCCAGAGTA 57.371 39.130 0.00 0.00 0.00 2.59
323 324 3.627123 CGTTTCCACAATATGATGCCAGA 59.373 43.478 0.00 0.00 0.00 3.86
327 328 2.358898 AGGCGTTTCCACAATATGATGC 59.641 45.455 0.00 0.00 37.29 3.91
335 336 0.821711 CTCCCAAGGCGTTTCCACAA 60.822 55.000 0.00 0.00 37.29 3.33
346 347 2.499303 AATCCAACCGCCTCCCAAGG 62.499 60.000 0.00 0.00 46.44 3.61
357 358 1.244816 GCCGCCCTTATAATCCAACC 58.755 55.000 0.00 0.00 0.00 3.77
359 360 0.250553 CCGCCGCCCTTATAATCCAA 60.251 55.000 0.00 0.00 0.00 3.53
361 362 0.391263 CTCCGCCGCCCTTATAATCC 60.391 60.000 0.00 0.00 0.00 3.01
372 373 1.810030 CAACTTCTACCTCCGCCGC 60.810 63.158 0.00 0.00 0.00 6.53
373 374 0.179134 CTCAACTTCTACCTCCGCCG 60.179 60.000 0.00 0.00 0.00 6.46
383 384 2.551270 TCACCCTATGCCTCAACTTCT 58.449 47.619 0.00 0.00 0.00 2.85
403 404 1.214992 CCTCCAAAGCCCCCTACCTT 61.215 60.000 0.00 0.00 0.00 3.50
405 406 2.690734 CCCTCCAAAGCCCCCTACC 61.691 68.421 0.00 0.00 0.00 3.18
410 411 3.744155 CCTCCCCTCCAAAGCCCC 61.744 72.222 0.00 0.00 0.00 5.80
422 423 3.756963 GGTCTATTTTTCACACACCTCCC 59.243 47.826 0.00 0.00 0.00 4.30
423 424 3.756963 GGGTCTATTTTTCACACACCTCC 59.243 47.826 0.00 0.00 0.00 4.30
430 431 3.772387 TGGCATGGGTCTATTTTTCACA 58.228 40.909 0.00 0.00 0.00 3.58
435 436 6.627065 CGTTATTGTTGGCATGGGTCTATTTT 60.627 38.462 0.00 0.00 0.00 1.82
442 443 0.530288 GCGTTATTGTTGGCATGGGT 59.470 50.000 0.00 0.00 0.00 4.51
463 464 1.878088 CCTGCGCGTCCTACTCTAATA 59.122 52.381 8.43 0.00 0.00 0.98
465 466 1.381928 CCCTGCGCGTCCTACTCTAA 61.382 60.000 8.43 0.00 0.00 2.10
477 478 1.718757 GATGGTTGTCATCCCTGCGC 61.719 60.000 0.00 0.00 44.92 6.09
495 496 0.976073 GGTCACGAGGAAGGGATGGA 60.976 60.000 0.00 0.00 0.00 3.41
501 503 2.125912 CGCTGGTCACGAGGAAGG 60.126 66.667 0.00 0.00 0.00 3.46
544 546 9.379791 CCGTGTCTTCTAGGTTTTTATAGAAAT 57.620 33.333 0.00 0.00 0.00 2.17
563 565 3.008594 TGTGGTAATTCATTCCCGTGTCT 59.991 43.478 0.00 0.00 0.00 3.41
593 595 5.880054 ACCTACATACAATCAAAGCACAC 57.120 39.130 0.00 0.00 0.00 3.82
629 631 1.079127 CACCCTCTTAGCCGGTGTG 60.079 63.158 1.90 0.00 41.80 3.82
637 639 4.628074 TCGTGTCTTTTTCACCCTCTTAG 58.372 43.478 0.00 0.00 32.86 2.18
638 640 4.628074 CTCGTGTCTTTTTCACCCTCTTA 58.372 43.478 0.00 0.00 32.86 2.10
653 655 0.179240 CGCTTTCATGTGCTCGTGTC 60.179 55.000 7.79 0.00 32.85 3.67
672 677 8.798153 CGAAAACTAAAATGTTGAATGGATAGC 58.202 33.333 0.00 0.00 0.00 2.97
677 682 6.635239 ACGTCGAAAACTAAAATGTTGAATGG 59.365 34.615 0.00 0.00 0.00 3.16
712 717 5.808366 TGTGACTTTGTGAGAGTTCCTAT 57.192 39.130 0.00 0.00 0.00 2.57
713 718 5.607939 TTGTGACTTTGTGAGAGTTCCTA 57.392 39.130 0.00 0.00 0.00 2.94
729 734 4.481930 TTCCGTTTGTCATCATTGTGAC 57.518 40.909 10.55 10.55 46.75 3.67
904 915 4.402793 ACATATTAGGGCTAGCGGTATCTG 59.597 45.833 9.00 3.62 0.00 2.90
914 925 7.383687 CCGATTAACTGAACATATTAGGGCTA 58.616 38.462 0.00 0.00 0.00 3.93
924 935 2.550978 CCGAGCCGATTAACTGAACAT 58.449 47.619 0.00 0.00 0.00 2.71
979 995 2.056223 CGGCTACGGGAGGGAAAGA 61.056 63.158 0.00 0.00 36.18 2.52
1153 1187 2.310930 CTGGAGGAGGAGGAGGAGGG 62.311 70.000 0.00 0.00 0.00 4.30
1154 1188 1.232792 CTGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
1155 1189 1.457455 GCTGGAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1359 1420 5.234116 CCAATCAACAAACAAGTTAGCAACC 59.766 40.000 0.00 0.00 0.00 3.77
1472 1533 1.059913 ACTTCTCTGTGAGGTTGGGG 58.940 55.000 0.00 0.00 30.27 4.96
1508 1570 6.511767 GCAATGTGTAATGTTATCCGAAGAGG 60.512 42.308 0.00 0.00 42.97 3.69
1509 1571 6.037062 TGCAATGTGTAATGTTATCCGAAGAG 59.963 38.462 0.00 0.00 0.00 2.85
1541 1604 4.515567 AGTTTCTACTGGTAAAGCAAGCAC 59.484 41.667 0.00 0.00 31.99 4.40
1601 1664 1.747206 CGGTTCTAGGGCATCAAAGGG 60.747 57.143 0.00 0.00 0.00 3.95
1672 1735 2.628178 GCCAGAAGCCCAAACTTTAAGT 59.372 45.455 0.00 0.00 34.35 2.24
1673 1736 2.351738 CGCCAGAAGCCCAAACTTTAAG 60.352 50.000 0.00 0.00 38.78 1.85
1694 1757 2.212652 TCACACTGTCAATGTGCAGAC 58.787 47.619 9.55 0.00 45.82 3.51
1700 1763 6.206395 TCACAAATTTCACACTGTCAATGT 57.794 33.333 0.00 0.00 0.00 2.71
1818 2006 1.132643 AGAGTACGCTAGCCAAGAACG 59.867 52.381 9.66 0.00 0.00 3.95
1831 2019 9.922305 GAATTTGGAAAATCTGATTAGAGTACG 57.078 33.333 2.85 0.00 36.14 3.67
1833 2021 9.884636 TCGAATTTGGAAAATCTGATTAGAGTA 57.115 29.630 2.85 0.00 36.14 2.59
1838 2026 8.612619 GCTACTCGAATTTGGAAAATCTGATTA 58.387 33.333 2.85 0.00 0.00 1.75
1890 2078 2.094675 CACCTTGGCACCTTCCATAAG 58.905 52.381 0.00 0.00 35.77 1.73
2584 2779 8.452534 TGTACCGACCAATAAAATTGAACATAC 58.547 33.333 1.23 0.00 0.00 2.39
2604 2799 5.163893 ACGCAGTCAATATTTTCTTGTACCG 60.164 40.000 0.00 0.00 29.74 4.02
2605 2800 6.178239 ACGCAGTCAATATTTTCTTGTACC 57.822 37.500 0.00 0.00 29.74 3.34
2627 2822 5.973651 TCGAACAATCTATGATCTGCAAC 57.026 39.130 0.00 0.00 0.00 4.17
2747 2942 0.388659 TCGCCAAACAAAGCTGCAAT 59.611 45.000 1.02 0.00 0.00 3.56
2817 3012 5.010012 CCTCTGCCTTTTCTTTTCAGCTTTA 59.990 40.000 0.00 0.00 0.00 1.85
2892 3087 5.625311 GGCTTCAAAGTTCAAATTCGTACTG 59.375 40.000 0.00 0.00 0.00 2.74
2948 3143 9.577110 GTTAATTGCATGAAGATTCATTCTCAA 57.423 29.630 5.32 10.05 45.13 3.02
3013 3208 6.698008 ATCACAAGACAAAGATTGTTCACA 57.302 33.333 0.00 0.00 45.52 3.58
3014 3209 6.074676 GCAATCACAAGACAAAGATTGTTCAC 60.075 38.462 13.49 0.00 45.52 3.18
3064 3259 7.256494 ACTCCTCTTTCTTCAGAAGATGATT 57.744 36.000 13.86 0.00 37.89 2.57
3251 3830 7.547370 TCAACACATATGATGTTCACGAATGTA 59.453 33.333 10.38 0.00 42.70 2.29
3733 6488 5.982516 TGCATTCCAACATACAAAACTGTTC 59.017 36.000 0.00 0.00 33.45 3.18
3908 6896 6.721208 TCAAACAAGGATGAAGAATAGGCTTT 59.279 34.615 0.00 0.00 0.00 3.51
3909 6897 6.248433 TCAAACAAGGATGAAGAATAGGCTT 58.752 36.000 0.00 0.00 0.00 4.35
3910 6898 5.819991 TCAAACAAGGATGAAGAATAGGCT 58.180 37.500 0.00 0.00 0.00 4.58
3911 6899 6.705863 ATCAAACAAGGATGAAGAATAGGC 57.294 37.500 0.00 0.00 0.00 3.93
3912 6900 7.775093 TGGTATCAAACAAGGATGAAGAATAGG 59.225 37.037 0.00 0.00 0.00 2.57
4069 7061 6.097129 TGAACCATCACCGTAAGTATACATCA 59.903 38.462 5.50 0.00 32.02 3.07
4070 7062 6.509656 TGAACCATCACCGTAAGTATACATC 58.490 40.000 5.50 0.00 32.02 3.06
4188 7219 3.810373 CAAACTAACGGCACACAGAATC 58.190 45.455 0.00 0.00 0.00 2.52
4249 7284 6.316390 AGTTTCAGTGGAACAAGAACTTACTG 59.684 38.462 16.71 0.00 44.16 2.74
4286 7321 7.253422 CCCTAATGAGCAGATAAACAACAAAG 58.747 38.462 0.00 0.00 0.00 2.77
4297 7332 2.039613 GCCTAAGCCCTAATGAGCAGAT 59.960 50.000 0.00 0.00 0.00 2.90
4381 7423 1.467342 GAGCATACAACGGGGAAACAC 59.533 52.381 0.00 0.00 0.00 3.32
4643 7826 8.690203 TCTCAAATCTGTCAAGTTTGGAATTA 57.310 30.769 8.79 0.00 34.48 1.40
4671 7854 4.022416 TGTTCAATACTTGGTGACCAATGC 60.022 41.667 18.64 2.34 43.07 3.56
4721 7904 3.489738 CCAGTACAATGGCTTAATGCAGC 60.490 47.826 0.00 0.00 45.15 5.25
4931 8152 4.425772 TCTCCTTCACTGTTAATCCCTGA 58.574 43.478 0.00 0.00 0.00 3.86
5082 17332 5.188327 TGGAATAGACATCACTCACGATC 57.812 43.478 0.00 0.00 0.00 3.69
5181 17434 4.021016 AGAGCCTTTTGGACACTACACTAG 60.021 45.833 0.00 0.00 44.07 2.57
5182 17435 3.901844 AGAGCCTTTTGGACACTACACTA 59.098 43.478 0.00 0.00 44.07 2.74
5186 17439 9.780186 ATAATATAAGAGCCTTTTGGACACTAC 57.220 33.333 0.00 0.00 44.07 2.73
5191 17444 7.175119 GTCCCATAATATAAGAGCCTTTTGGAC 59.825 40.741 0.00 0.00 44.07 4.02
5192 17445 7.231467 GTCCCATAATATAAGAGCCTTTTGGA 58.769 38.462 0.00 0.00 44.07 3.53
5193 17446 6.149474 CGTCCCATAATATAAGAGCCTTTTGG 59.851 42.308 0.00 0.00 44.18 3.28
5194 17447 6.934645 TCGTCCCATAATATAAGAGCCTTTTG 59.065 38.462 0.00 0.00 0.00 2.44
5195 17448 7.074653 TCGTCCCATAATATAAGAGCCTTTT 57.925 36.000 0.00 0.00 0.00 2.27
5197 17450 6.295916 CCTTCGTCCCATAATATAAGAGCCTT 60.296 42.308 0.00 0.00 0.00 4.35
5198 17451 5.187967 CCTTCGTCCCATAATATAAGAGCCT 59.812 44.000 0.00 0.00 0.00 4.58
5199 17452 5.420409 CCTTCGTCCCATAATATAAGAGCC 58.580 45.833 0.00 0.00 0.00 4.70
5201 17454 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
5205 17458 6.797707 ACTACTCCCTTCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
5207 17460 5.070823 ACTACTCCCTTCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
5208 17461 3.924922 ACTACTCCCTTCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
5213 17466 0.535797 CCAACTACTCCCTTCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
5214 17467 0.108281 GCCAACTACTCCCTTCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
5215 17468 0.606604 TGCCAACTACTCCCTTCGTC 59.393 55.000 0.00 0.00 0.00 4.20
5219 17494 0.842467 AGGCTGCCAACTACTCCCTT 60.842 55.000 22.65 0.00 0.00 3.95
5295 17572 2.691526 TGTCCTGACATACCATACGACC 59.308 50.000 0.00 0.00 36.21 4.79
5450 17842 9.632969 GTGTCAACACATATAAACATTATCGAC 57.367 33.333 8.37 0.00 45.75 4.20
6019 19659 6.201425 GGTAACGTTGATCAACTGTAGAAACA 59.799 38.462 30.45 12.32 39.08 2.83
6020 19660 6.423001 AGGTAACGTTGATCAACTGTAGAAAC 59.577 38.462 30.45 22.36 46.39 2.78
6021 19661 6.518493 AGGTAACGTTGATCAACTGTAGAAA 58.482 36.000 30.45 15.63 46.39 2.52
6022 19662 6.015688 AGAGGTAACGTTGATCAACTGTAGAA 60.016 38.462 30.45 17.45 46.39 2.10
6023 19663 5.475909 AGAGGTAACGTTGATCAACTGTAGA 59.524 40.000 30.45 19.21 46.39 2.59
6024 19664 5.710984 AGAGGTAACGTTGATCAACTGTAG 58.289 41.667 30.45 19.67 46.39 2.74
6025 19665 5.242171 TGAGAGGTAACGTTGATCAACTGTA 59.758 40.000 30.45 20.70 46.39 2.74
6026 19666 4.038763 TGAGAGGTAACGTTGATCAACTGT 59.961 41.667 30.45 25.88 46.39 3.55
6027 19667 4.556233 TGAGAGGTAACGTTGATCAACTG 58.444 43.478 30.45 25.34 46.39 3.16
6028 19668 4.866508 TGAGAGGTAACGTTGATCAACT 57.133 40.909 30.45 18.55 46.39 3.16
6213 19870 2.358939 TAAACCTTCTTCCTCGTCGC 57.641 50.000 0.00 0.00 0.00 5.19
6362 20042 1.948145 CTCATCCAAATGGCTCTCTGC 59.052 52.381 0.00 0.00 41.94 4.26
6400 20080 1.526917 GCCATGCATTAGCTCGGGT 60.527 57.895 10.58 0.00 42.74 5.28
6705 20402 0.818296 GAAGGCCTAGAACTGCTCGA 59.182 55.000 5.16 0.00 0.00 4.04
6761 20458 4.335594 GCATTACCATCAGAAGTTACCCAC 59.664 45.833 0.00 0.00 0.00 4.61
6805 20502 5.686753 TCCAGCTGGTTGTTAAAAGAAGTA 58.313 37.500 31.58 3.96 36.34 2.24
6917 20614 5.273297 CCCCAGGGAAACAAAATCGTTTTG 61.273 45.833 7.25 16.48 45.50 2.44
6959 20656 6.658816 TGTACCTACTCATGCAACAAATTGAT 59.341 34.615 0.00 0.00 38.15 2.57
7275 20973 7.279615 TCCTCGGATAATAAAGAAGATTGCAA 58.720 34.615 0.00 0.00 0.00 4.08
7277 20975 7.730364 TTCCTCGGATAATAAAGAAGATTGC 57.270 36.000 0.00 0.00 0.00 3.56
7597 21500 2.765135 TGAGAGCTTGAGAGAGAATGGG 59.235 50.000 0.00 0.00 0.00 4.00
7984 24832 3.074538 ACTGCCAAGGAAAACCAGAGTAT 59.925 43.478 0.00 0.00 0.00 2.12
8008 24856 1.086696 CCTTGTTCACGATGCGGAAT 58.913 50.000 0.00 0.00 0.00 3.01
8147 24996 7.664731 ACTTCTAATAGCCCAATCAATGATCTG 59.335 37.037 0.00 0.00 0.00 2.90
8148 24997 7.753630 ACTTCTAATAGCCCAATCAATGATCT 58.246 34.615 0.00 0.00 0.00 2.75
8189 25047 3.660501 ATACGAACACACTCTCAAGCA 57.339 42.857 0.00 0.00 0.00 3.91
8206 25065 1.540707 GACACGGGAGCTAGCCTATAC 59.459 57.143 12.13 0.00 0.00 1.47
8209 25068 1.035932 GTGACACGGGAGCTAGCCTA 61.036 60.000 12.13 0.00 0.00 3.93
8223 25082 2.239400 ACTCGGATGACTTCTGTGACA 58.761 47.619 6.31 0.00 32.10 3.58
8224 25083 3.181495 CCTACTCGGATGACTTCTGTGAC 60.181 52.174 6.31 0.00 33.16 3.67
8348 25207 3.617540 TGAATTTGTGCTACACCGTTG 57.382 42.857 0.00 0.00 32.73 4.10
8405 25289 7.730672 TCAAAAATATCCATCCCACATGAAA 57.269 32.000 0.00 0.00 0.00 2.69
8412 25296 6.942163 TTGGTTTCAAAAATATCCATCCCA 57.058 33.333 0.00 0.00 0.00 4.37
8510 25404 2.531522 AACAGCCTGAAATTTGTGCC 57.468 45.000 0.00 0.00 0.00 5.01
8536 25430 9.130661 TCTTTCATCCACTTTGAAGATGTAAAA 57.869 29.630 0.00 0.00 38.79 1.52
8538 25432 8.690203 TTCTTTCATCCACTTTGAAGATGTAA 57.310 30.769 0.00 0.00 38.79 2.41
8565 25459 4.332819 GGACAGATGTATTTTCCCACTTCG 59.667 45.833 0.00 0.00 0.00 3.79
8600 25497 9.258826 CCAAAGATGACAACTCAGATAAGATAG 57.741 37.037 0.00 0.00 0.00 2.08
8612 25545 6.006449 AGATACAAAGCCAAAGATGACAACT 58.994 36.000 0.00 0.00 0.00 3.16
8618 25551 8.127327 CACAGATAAGATACAAAGCCAAAGATG 58.873 37.037 0.00 0.00 0.00 2.90
8620 25553 7.168219 ACACAGATAAGATACAAAGCCAAAGA 58.832 34.615 0.00 0.00 0.00 2.52
8621 25554 7.383102 ACACAGATAAGATACAAAGCCAAAG 57.617 36.000 0.00 0.00 0.00 2.77
8622 25555 7.230510 ACAACACAGATAAGATACAAAGCCAAA 59.769 33.333 0.00 0.00 0.00 3.28
8626 25559 9.543018 GTTTACAACACAGATAAGATACAAAGC 57.457 33.333 0.00 0.00 0.00 3.51
8726 25664 3.942748 TGTGCCGTTCTAAACTTGTTCTT 59.057 39.130 0.00 0.00 0.00 2.52
8727 25665 3.311596 GTGTGCCGTTCTAAACTTGTTCT 59.688 43.478 0.00 0.00 0.00 3.01
8789 25727 2.595386 CAAAAGCCGAACCATGTTAGC 58.405 47.619 0.00 0.00 0.00 3.09
8801 25739 1.511887 CAACCGATCGCAAAAGCCG 60.512 57.895 10.32 0.00 0.00 5.52
8892 25831 5.010314 TCAAAAGCATCAGACTGCATCTTTT 59.990 36.000 15.97 15.97 44.77 2.27
8897 25837 3.682696 TCTCAAAAGCATCAGACTGCAT 58.317 40.909 0.00 0.00 44.77 3.96
8923 25863 4.335594 AGTGTTGTTGCTTCAAAGGAGTAC 59.664 41.667 0.00 0.00 0.00 2.73
8949 25916 3.148412 CATGTCATGGACACAAGTTCCA 58.852 45.455 4.78 0.00 45.65 3.53
8962 25929 6.820152 TCTTGTAGACAGAATTCCATGTCATG 59.180 38.462 22.69 5.79 46.63 3.07
9013 25981 6.928492 GCCCAATACATCTTTGTTCTTTTTGA 59.072 34.615 0.00 0.00 37.28 2.69
9052 26020 3.278574 TCAGATCCAAATTGGTAAGCCG 58.721 45.455 12.28 0.00 39.03 5.52
9090 26058 3.243535 GCTTTAGGCTGTTTGAGTTGCTT 60.244 43.478 0.00 0.00 38.06 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.