Multiple sequence alignment - TraesCS5D01G454000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G454000 chr5D 100.000 3793 0 0 1 3793 501149641 501153433 0.000000e+00 7005.0
1 TraesCS5D01G454000 chr5B 87.321 2374 174 41 51 2345 622627653 622629978 0.000000e+00 2599.0
2 TraesCS5D01G454000 chr5B 94.518 456 23 2 2505 2960 622630028 622630481 0.000000e+00 702.0
3 TraesCS5D01G454000 chr5B 81.910 199 18 10 3543 3725 622631190 622631386 6.560000e-33 152.0
4 TraesCS5D01G454000 chr5B 100.000 43 0 0 2380 2422 622629987 622630029 3.140000e-11 80.5
5 TraesCS5D01G454000 chr5B 100.000 32 0 0 1 32 622627632 622627663 4.090000e-05 60.2
6 TraesCS5D01G454000 chr5A 89.144 1741 141 31 631 2348 626086913 626085198 0.000000e+00 2124.0
7 TraesCS5D01G454000 chr5A 88.016 751 58 19 2505 3234 626085151 626084412 0.000000e+00 859.0
8 TraesCS5D01G454000 chr5A 80.763 629 40 33 51 646 626089208 626088628 2.110000e-112 416.0
9 TraesCS5D01G454000 chr5A 97.727 44 1 0 2379 2422 626085193 626085150 4.060000e-10 76.8
10 TraesCS5D01G454000 chr1B 84.874 357 43 4 1814 2169 637561190 637560844 2.170000e-92 350.0
11 TraesCS5D01G454000 chr1B 83.471 363 44 7 1808 2169 408637294 408637641 1.310000e-84 324.0
12 TraesCS5D01G454000 chr1B 95.652 92 2 2 2420 2511 26838139 26838050 3.050000e-31 147.0
13 TraesCS5D01G454000 chr1B 93.069 101 5 2 2411 2511 470881327 470881229 3.050000e-31 147.0
14 TraesCS5D01G454000 chr3B 84.022 363 47 4 1808 2169 606345821 606346173 4.690000e-89 339.0
15 TraesCS5D01G454000 chr3B 91.346 104 6 3 2416 2519 777762568 777762468 5.110000e-29 139.0
16 TraesCS5D01G454000 chr7A 83.747 363 48 4 1808 2169 11421885 11422237 2.180000e-87 333.0
17 TraesCS5D01G454000 chr4B 93.069 101 5 2 2411 2511 649830805 649830903 3.050000e-31 147.0
18 TraesCS5D01G454000 chr7D 93.878 98 3 3 2409 2506 25410812 25410718 1.100000e-30 145.0
19 TraesCS5D01G454000 chr7B 93.814 97 5 1 2411 2507 671585136 671585231 1.100000e-30 145.0
20 TraesCS5D01G454000 chr6B 93.878 98 2 4 2409 2506 620628962 620628869 1.100000e-30 145.0
21 TraesCS5D01G454000 chr2B 87.805 123 15 0 1814 1936 274297458 274297336 1.100000e-30 145.0
22 TraesCS5D01G454000 chr6D 92.233 103 5 3 2406 2508 271233540 271233441 3.950000e-30 143.0
23 TraesCS5D01G454000 chrUn 92.079 101 6 2 2411 2511 369753270 369753172 1.420000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G454000 chr5D 501149641 501153433 3792 False 7005.00 7005 100.0000 1 3793 1 chr5D.!!$F1 3792
1 TraesCS5D01G454000 chr5B 622627632 622631386 3754 False 718.74 2599 92.7498 1 3725 5 chr5B.!!$F1 3724
2 TraesCS5D01G454000 chr5A 626084412 626089208 4796 True 868.95 2124 88.9125 51 3234 4 chr5A.!!$R1 3183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 111 0.253347 TCCTCTGGAGCCTGGGAAAT 60.253 55.0 0.0 0.0 0.00 2.17 F
135 144 0.255890 GCTTGCTCCCATTAGTCCCA 59.744 55.0 0.0 0.0 0.00 4.37 F
410 437 0.372334 CGTATGCCCGTTGTTACTGC 59.628 55.0 0.0 0.0 0.00 4.40 F
2021 3852 0.179029 CGGACAGGTTTGTTGAGGGT 60.179 55.0 0.0 0.0 37.76 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 3606 0.606604 AAAGGCAATTGCAGCAGGAG 59.393 50.000 30.32 0.00 44.36 3.69 R
1825 3653 0.973632 TCGGCAACCTGTACAGTGAT 59.026 50.000 21.18 5.35 0.00 3.06 R
2372 4203 2.024414 GCCAACTTCACTGAAGGTTGT 58.976 47.619 20.58 0.29 43.25 3.32 R
3770 5830 0.108585 AATCTTGTGGGACAGTGCGT 59.891 50.000 0.00 0.00 41.80 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.216662 TCCTGGTTGGTTCTGGAATATTTCTA 59.783 38.462 0.00 0.00 37.07 2.10
36 37 9.320295 TGGTTGGTTCTGGAATATTTCTAAAAT 57.680 29.630 0.00 0.00 0.00 1.82
40 41 9.416284 TGGTTCTGGAATATTTCTAAAATACCC 57.584 33.333 0.00 1.57 0.00 3.69
41 42 9.642343 GGTTCTGGAATATTTCTAAAATACCCT 57.358 33.333 0.00 0.00 0.00 4.34
104 111 0.253347 TCCTCTGGAGCCTGGGAAAT 60.253 55.000 0.00 0.00 0.00 2.17
128 137 4.408821 TCGCCGCTTGCTCCCATT 62.409 61.111 0.00 0.00 38.05 3.16
129 138 2.513666 CGCCGCTTGCTCCCATTA 60.514 61.111 0.00 0.00 38.05 1.90
130 139 2.537560 CGCCGCTTGCTCCCATTAG 61.538 63.158 0.00 0.00 38.05 1.73
131 140 1.452108 GCCGCTTGCTCCCATTAGT 60.452 57.895 0.00 0.00 36.87 2.24
132 141 1.440145 GCCGCTTGCTCCCATTAGTC 61.440 60.000 0.00 0.00 36.87 2.59
133 142 0.815615 CCGCTTGCTCCCATTAGTCC 60.816 60.000 0.00 0.00 0.00 3.85
134 143 0.815615 CGCTTGCTCCCATTAGTCCC 60.816 60.000 0.00 0.00 0.00 4.46
135 144 0.255890 GCTTGCTCCCATTAGTCCCA 59.744 55.000 0.00 0.00 0.00 4.37
136 145 1.133668 GCTTGCTCCCATTAGTCCCAT 60.134 52.381 0.00 0.00 0.00 4.00
137 146 2.106511 GCTTGCTCCCATTAGTCCCATA 59.893 50.000 0.00 0.00 0.00 2.74
138 147 3.245052 GCTTGCTCCCATTAGTCCCATAT 60.245 47.826 0.00 0.00 0.00 1.78
139 148 4.019321 GCTTGCTCCCATTAGTCCCATATA 60.019 45.833 0.00 0.00 0.00 0.86
140 149 5.339530 GCTTGCTCCCATTAGTCCCATATAT 60.340 44.000 0.00 0.00 0.00 0.86
141 150 6.126768 GCTTGCTCCCATTAGTCCCATATATA 60.127 42.308 0.00 0.00 0.00 0.86
147 156 9.273137 CTCCCATTAGTCCCATATATACTCTTT 57.727 37.037 0.00 0.00 0.00 2.52
244 258 1.369625 CCGAAGCGCTTACCATTTCT 58.630 50.000 25.11 0.00 0.00 2.52
353 377 1.672881 CTGCGTCATTGGGAATTCTCC 59.327 52.381 2.04 4.49 41.59 3.71
388 412 2.823829 CGGTAATGCCCGCTTCTGC 61.824 63.158 0.00 0.00 41.78 4.26
396 420 1.592669 CCCGCTTCTGCCTCGTATG 60.593 63.158 0.00 0.00 35.36 2.39
410 437 0.372334 CGTATGCCCGTTGTTACTGC 59.628 55.000 0.00 0.00 0.00 4.40
447 474 3.347216 AGAACTCCGATTTGGTTCATGG 58.653 45.455 0.00 0.00 40.97 3.66
448 475 1.463674 ACTCCGATTTGGTTCATGGC 58.536 50.000 0.00 0.00 39.52 4.40
449 476 0.378257 CTCCGATTTGGTTCATGGCG 59.622 55.000 0.00 0.00 39.52 5.69
450 477 1.226660 CCGATTTGGTTCATGGCGC 60.227 57.895 0.00 0.00 0.00 6.53
451 478 1.583451 CGATTTGGTTCATGGCGCG 60.583 57.895 0.00 0.00 0.00 6.86
452 479 1.800032 GATTTGGTTCATGGCGCGA 59.200 52.632 12.10 0.00 0.00 5.87
453 480 0.523335 GATTTGGTTCATGGCGCGAC 60.523 55.000 12.10 8.22 0.00 5.19
517 551 0.975887 TTTTAGTAGAACGGCGGGGT 59.024 50.000 13.24 0.00 0.00 4.95
581 636 0.583438 CCTGTTGCCGAGCATAATCG 59.417 55.000 0.00 0.00 38.76 3.34
615 670 1.153066 TTGGGCGACACTCTTGCAA 60.153 52.632 0.00 0.00 0.00 4.08
706 2491 7.795047 TCAGATTTGGATTATGTAGAGCAAGA 58.205 34.615 0.00 0.00 0.00 3.02
735 2522 1.515304 ACGCGTTGTGTTGTTTGCC 60.515 52.632 5.58 0.00 0.00 4.52
766 2553 3.798202 AGTCTGTCAGTCCACAACTTTC 58.202 45.455 0.00 0.00 35.45 2.62
767 2554 3.197766 AGTCTGTCAGTCCACAACTTTCA 59.802 43.478 0.00 0.00 35.45 2.69
774 2561 4.101585 TCAGTCCACAACTTTCATGAGAGT 59.898 41.667 12.94 12.94 35.45 3.24
820 2608 6.092259 GCAGTTATCTTAGTACTTGTTGTGGG 59.908 42.308 0.00 0.00 0.00 4.61
838 2638 2.290387 TGGGCAGTGTTTCGGCTTAATA 60.290 45.455 0.00 0.00 37.40 0.98
859 2659 2.326550 GGTGTTCACCGTTGCGTG 59.673 61.111 6.22 0.00 34.93 5.34
1021 2840 1.156645 GCGGCTCTATTCACCTGCAG 61.157 60.000 6.78 6.78 0.00 4.41
1067 2886 7.966812 TCAAGTAGTATGTATGCTCATTCCAT 58.033 34.615 0.00 0.00 0.00 3.41
1152 2971 3.808728 CCGTTCTCATATGACATTGGGT 58.191 45.455 0.00 0.00 0.00 4.51
1266 3085 1.630878 GGATTGTCAACCAGAGAGGGT 59.369 52.381 0.00 0.00 45.04 4.34
1274 3093 4.158209 GTCAACCAGAGAGGGTAGTCTAAC 59.842 50.000 0.00 0.00 41.32 2.34
1277 3096 2.691011 CCAGAGAGGGTAGTCTAACTGC 59.309 54.545 0.00 0.00 0.00 4.40
1302 3121 0.941936 TCGACATGCTTTCACGCGAA 60.942 50.000 15.93 0.00 0.00 4.70
1304 3123 1.658931 CGACATGCTTTCACGCGAAAA 60.659 47.619 15.93 12.16 40.57 2.29
1330 3149 4.134563 CTCGGGTATTAGTTGGAAATGGG 58.865 47.826 0.00 0.00 0.00 4.00
1332 3151 3.372241 CGGGTATTAGTTGGAAATGGGGT 60.372 47.826 0.00 0.00 0.00 4.95
1335 3154 3.845109 ATTAGTTGGAAATGGGGTGGT 57.155 42.857 0.00 0.00 0.00 4.16
1338 3157 0.678950 GTTGGAAATGGGGTGGTGTG 59.321 55.000 0.00 0.00 0.00 3.82
1392 3211 5.654497 CTCTGCTTTGGTTTTTCAGTTTCT 58.346 37.500 0.00 0.00 0.00 2.52
1401 3220 1.821216 TTTCAGTTTCTGGGATCGCC 58.179 50.000 7.38 0.12 31.51 5.54
1443 3262 4.649692 ACAGAAAGATCAACTGTGCAGAT 58.350 39.130 15.13 0.00 42.18 2.90
1519 3338 4.320861 CCGGTGAGAAATGCATTTGTGTTA 60.321 41.667 28.67 10.76 0.00 2.41
1536 3355 9.942850 ATTTGTGTTAGGCTTAATAATTGCTTT 57.057 25.926 0.00 0.00 0.00 3.51
1579 3398 8.851145 TGCCTTTATAATATTTATGTTTGCGGA 58.149 29.630 0.00 0.00 0.00 5.54
1580 3399 9.855021 GCCTTTATAATATTTATGTTTGCGGAT 57.145 29.630 0.00 0.00 0.00 4.18
1595 3423 6.540551 TGTTTGCGGATATGTCAATAAGCTAA 59.459 34.615 0.00 0.00 0.00 3.09
1623 3451 4.037446 TGTGACTGTTTTACCTGGATTTGC 59.963 41.667 0.00 0.00 0.00 3.68
1755 3583 6.319405 TGATGAATTGAGGTCAATGGTATGTG 59.681 38.462 5.98 0.00 45.06 3.21
1778 3606 5.472137 TGTGGAGTGTTTCTAGGTATTTTGC 59.528 40.000 0.00 0.00 0.00 3.68
1784 3612 4.700213 TGTTTCTAGGTATTTTGCTCCTGC 59.300 41.667 0.00 0.00 40.20 4.85
1828 3656 9.770097 CTCTAAAGCTTCTATACAAATCCATCA 57.230 33.333 0.00 0.00 0.00 3.07
1829 3657 9.547753 TCTAAAGCTTCTATACAAATCCATCAC 57.452 33.333 0.00 0.00 0.00 3.06
1890 3718 3.935203 AGACTGAATGGTTAGTTGATGCG 59.065 43.478 0.00 0.00 0.00 4.73
1918 3746 7.386299 ACTCTTACTGTTATGTTTGCTCTTCTG 59.614 37.037 0.00 0.00 0.00 3.02
1919 3747 6.650807 TCTTACTGTTATGTTTGCTCTTCTGG 59.349 38.462 0.00 0.00 0.00 3.86
1942 3773 9.145865 CTGGTTTTAAAATGTAAATGCGGTATT 57.854 29.630 3.52 0.00 0.00 1.89
1955 3786 9.783256 GTAAATGCGGTATTGATAATTATTCCC 57.217 33.333 0.00 0.00 0.00 3.97
1956 3787 8.650143 AAATGCGGTATTGATAATTATTCCCT 57.350 30.769 0.00 0.00 0.00 4.20
1957 3788 8.650143 AATGCGGTATTGATAATTATTCCCTT 57.350 30.769 0.00 0.00 0.00 3.95
1958 3789 9.747898 AATGCGGTATTGATAATTATTCCCTTA 57.252 29.630 0.00 0.00 0.00 2.69
1959 3790 9.920946 ATGCGGTATTGATAATTATTCCCTTAT 57.079 29.630 0.00 0.00 0.00 1.73
1960 3791 9.747898 TGCGGTATTGATAATTATTCCCTTATT 57.252 29.630 0.00 0.00 0.00 1.40
2021 3852 0.179029 CGGACAGGTTTGTTGAGGGT 60.179 55.000 0.00 0.00 37.76 4.34
2051 3882 7.591421 TGATACATACGTTTCCCAGATTAGA 57.409 36.000 0.00 0.00 0.00 2.10
2091 3922 2.550855 GGTGAGCCAGAACTGTTCATGA 60.551 50.000 21.50 0.00 34.09 3.07
2177 4008 4.580167 GTGGCTACCAGCAATGAAATATGA 59.420 41.667 0.00 0.00 44.75 2.15
2180 4011 5.532406 GGCTACCAGCAATGAAATATGAAGA 59.468 40.000 0.00 0.00 44.75 2.87
2181 4012 6.433766 GCTACCAGCAATGAAATATGAAGAC 58.566 40.000 0.00 0.00 41.89 3.01
2182 4013 6.261826 GCTACCAGCAATGAAATATGAAGACT 59.738 38.462 0.00 0.00 41.89 3.24
2183 4014 7.201767 GCTACCAGCAATGAAATATGAAGACTT 60.202 37.037 0.00 0.00 41.89 3.01
2184 4015 9.330063 CTACCAGCAATGAAATATGAAGACTTA 57.670 33.333 0.00 0.00 0.00 2.24
2221 4052 9.959749 GTTAGCTAATATCTATATCTGTGGAGC 57.040 37.037 9.88 0.00 0.00 4.70
2222 4053 9.928618 TTAGCTAATATCTATATCTGTGGAGCT 57.071 33.333 0.86 0.00 38.77 4.09
2245 4076 8.332777 GCTAAATAGCTTAATGCAAAGAGTTG 57.667 34.615 5.19 0.00 45.62 3.16
2246 4077 8.184192 GCTAAATAGCTTAATGCAAAGAGTTGA 58.816 33.333 5.19 0.00 45.62 3.18
2263 4094 4.883083 AGTTGACTCTATTTTGTCTGCGA 58.117 39.130 0.00 0.00 34.57 5.10
2304 4135 9.807649 GCTTATGTGAAATCATTTACAAAGGAT 57.192 29.630 0.00 0.00 40.73 3.24
2348 4179 9.793259 ATATTCGAAATATTTGCTTCCTAGGAA 57.207 29.630 22.94 22.94 0.00 3.36
2349 4180 8.697507 ATTCGAAATATTTGCTTCCTAGGAAT 57.302 30.769 24.48 11.93 31.34 3.01
2350 4181 8.519799 TTCGAAATATTTGCTTCCTAGGAATT 57.480 30.769 24.48 13.01 31.34 2.17
2351 4182 8.519799 TCGAAATATTTGCTTCCTAGGAATTT 57.480 30.769 24.48 18.55 31.34 1.82
2352 4183 9.621629 TCGAAATATTTGCTTCCTAGGAATTTA 57.378 29.630 24.48 11.02 31.34 1.40
2424 4255 9.871238 TCCAGTGACAGTTAAAATTAGATACTC 57.129 33.333 0.00 0.00 0.00 2.59
2425 4256 9.099454 CCAGTGACAGTTAAAATTAGATACTCC 57.901 37.037 0.00 0.00 0.00 3.85
2426 4257 9.099454 CAGTGACAGTTAAAATTAGATACTCCC 57.901 37.037 0.00 0.00 0.00 4.30
2427 4258 9.047947 AGTGACAGTTAAAATTAGATACTCCCT 57.952 33.333 0.00 0.00 0.00 4.20
2428 4259 9.315525 GTGACAGTTAAAATTAGATACTCCCTC 57.684 37.037 0.00 0.00 0.00 4.30
2429 4260 9.268282 TGACAGTTAAAATTAGATACTCCCTCT 57.732 33.333 0.00 0.00 0.00 3.69
2430 4261 9.535878 GACAGTTAAAATTAGATACTCCCTCTG 57.464 37.037 0.00 0.00 0.00 3.35
2431 4262 9.047947 ACAGTTAAAATTAGATACTCCCTCTGT 57.952 33.333 0.00 0.00 0.00 3.41
2447 4278 8.041919 ACTCCCTCTGTAAACTAATAAAAGAGC 58.958 37.037 0.00 0.00 0.00 4.09
2448 4279 7.039882 TCCCTCTGTAAACTAATAAAAGAGCG 58.960 38.462 0.00 0.00 0.00 5.03
2449 4280 6.817140 CCCTCTGTAAACTAATAAAAGAGCGT 59.183 38.462 0.00 0.00 0.00 5.07
2450 4281 7.333672 CCCTCTGTAAACTAATAAAAGAGCGTT 59.666 37.037 0.00 0.00 0.00 4.84
2451 4282 8.718734 CCTCTGTAAACTAATAAAAGAGCGTTT 58.281 33.333 0.00 0.00 0.00 3.60
2459 4290 9.654663 AACTAATAAAAGAGCGTTTAGATCACT 57.345 29.630 0.00 0.00 37.82 3.41
2463 4294 9.654663 AATAAAAGAGCGTTTAGATCACTACTT 57.345 29.630 0.00 0.00 37.82 2.24
2464 4295 7.964604 AAAAGAGCGTTTAGATCACTACTTT 57.035 32.000 0.00 0.00 37.82 2.66
2466 4297 8.690680 AAAGAGCGTTTAGATCACTACTTTAG 57.309 34.615 0.00 0.00 37.82 1.85
2467 4298 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2468 4299 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2469 4300 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2470 4301 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2471 4302 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2472 4303 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2502 4333 8.777578 TGCTCTTATATTAGTTTACTGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
2503 4334 8.861086 TGCTCTTATATTAGTTTACTGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
2519 4350 4.951094 TGAGGGAGTAGCTAAGAAGTTCTC 59.049 45.833 5.70 0.00 0.00 2.87
2520 4351 5.198207 GAGGGAGTAGCTAAGAAGTTCTCT 58.802 45.833 5.70 1.81 35.13 3.10
2560 4391 5.397142 AAGGTTCCTTCTTGATTTGATGC 57.603 39.130 0.00 0.00 0.00 3.91
2577 4408 0.173481 TGCATGCTCAGTACTCGGTC 59.827 55.000 20.33 0.00 0.00 4.79
2717 4548 4.712051 TGCTGAATATGGCCAAGAGTAT 57.288 40.909 10.96 0.00 0.00 2.12
2789 4620 4.720649 TTCCCTACAGATTCAGAAGACG 57.279 45.455 0.00 0.00 0.00 4.18
2805 4636 0.962356 GACGTAGGGGTCCGAAGACA 60.962 60.000 0.00 0.00 45.48 3.41
2807 4638 0.172803 CGTAGGGGTCCGAAGACAAG 59.827 60.000 0.00 0.00 45.48 3.16
2810 4641 0.685660 AGGGGTCCGAAGACAAGAAC 59.314 55.000 0.00 0.00 45.48 3.01
2811 4642 0.669625 GGGGTCCGAAGACAAGAACG 60.670 60.000 0.00 0.00 45.48 3.95
2817 4648 4.293415 GTCCGAAGACAAGAACGTAGAAA 58.707 43.478 0.00 0.00 42.99 2.52
2824 4655 5.238583 AGACAAGAACGTAGAAATTGGGAG 58.761 41.667 0.00 0.00 0.00 4.30
2826 4657 4.995487 ACAAGAACGTAGAAATTGGGAGTC 59.005 41.667 0.00 0.00 0.00 3.36
2879 4710 2.030274 GGTTTCCAGTTTTCCCATGTCG 60.030 50.000 0.00 0.00 0.00 4.35
2885 4716 6.433847 TCCAGTTTTCCCATGTCGATATAT 57.566 37.500 0.00 0.00 0.00 0.86
2898 4729 9.439537 CCATGTCGATATATTAGTTGAGATACG 57.560 37.037 0.00 0.00 0.00 3.06
2934 4765 4.865365 GGCGAGAGTGATTGTTATATAGCC 59.135 45.833 0.00 0.00 0.00 3.93
2937 4768 6.024664 CGAGAGTGATTGTTATATAGCCTCG 58.975 44.000 0.00 0.00 33.91 4.63
2947 4778 8.640063 TTGTTATATAGCCTCGGTGATAAGTA 57.360 34.615 0.00 0.00 0.00 2.24
2948 4779 8.818622 TGTTATATAGCCTCGGTGATAAGTAT 57.181 34.615 0.00 0.00 0.00 2.12
2949 4780 9.251440 TGTTATATAGCCTCGGTGATAAGTATT 57.749 33.333 0.00 0.00 0.00 1.89
2956 4787 7.097834 AGCCTCGGTGATAAGTATTATTAAGC 58.902 38.462 0.00 0.00 42.35 3.09
2957 4788 7.038941 AGCCTCGGTGATAAGTATTATTAAGCT 60.039 37.037 0.00 0.00 42.35 3.74
2958 4789 7.603024 GCCTCGGTGATAAGTATTATTAAGCTT 59.397 37.037 3.48 3.48 42.35 3.74
2959 4790 9.490379 CCTCGGTGATAAGTATTATTAAGCTTT 57.510 33.333 3.20 0.00 42.35 3.51
2967 4798 6.862711 AGTATTATTAAGCTTTCTTCCCGC 57.137 37.500 3.20 0.00 33.85 6.13
2968 4799 6.354130 AGTATTATTAAGCTTTCTTCCCGCA 58.646 36.000 3.20 0.00 33.85 5.69
2969 4800 6.826741 AGTATTATTAAGCTTTCTTCCCGCAA 59.173 34.615 3.20 0.00 33.85 4.85
2970 4801 5.968528 TTATTAAGCTTTCTTCCCGCAAA 57.031 34.783 3.20 0.00 33.85 3.68
2971 4802 4.864704 ATTAAGCTTTCTTCCCGCAAAA 57.135 36.364 3.20 0.00 33.85 2.44
2972 4803 4.657436 TTAAGCTTTCTTCCCGCAAAAA 57.343 36.364 3.20 0.00 33.85 1.94
3009 4840 7.992180 GCTTTGCAGCATTATTAACTATGTT 57.008 32.000 0.00 0.00 46.49 2.71
3010 4841 7.834529 GCTTTGCAGCATTATTAACTATGTTG 58.165 34.615 0.00 9.67 46.49 3.33
3011 4842 7.701924 GCTTTGCAGCATTATTAACTATGTTGA 59.298 33.333 15.29 3.37 46.49 3.18
3012 4843 9.571810 CTTTGCAGCATTATTAACTATGTTGAA 57.428 29.630 15.29 6.06 35.70 2.69
3013 4844 9.920133 TTTGCAGCATTATTAACTATGTTGAAA 57.080 25.926 15.29 10.43 35.70 2.69
3014 4845 9.920133 TTGCAGCATTATTAACTATGTTGAAAA 57.080 25.926 15.29 8.58 35.70 2.29
3015 4846 9.571810 TGCAGCATTATTAACTATGTTGAAAAG 57.428 29.630 15.29 0.00 35.70 2.27
3016 4847 9.023967 GCAGCATTATTAACTATGTTGAAAAGG 57.976 33.333 15.29 0.00 35.70 3.11
3087 5031 6.830912 AGAAATCATGAATCGGGATTAGTGA 58.169 36.000 0.00 9.32 32.53 3.41
3088 5032 6.933521 AGAAATCATGAATCGGGATTAGTGAG 59.066 38.462 0.00 0.00 31.94 3.51
3089 5033 5.815233 ATCATGAATCGGGATTAGTGAGT 57.185 39.130 0.00 2.33 31.94 3.41
3090 5034 6.918067 ATCATGAATCGGGATTAGTGAGTA 57.082 37.500 0.00 0.00 31.94 2.59
3091 5035 6.332735 TCATGAATCGGGATTAGTGAGTAG 57.667 41.667 0.00 0.00 0.00 2.57
3092 5036 5.833667 TCATGAATCGGGATTAGTGAGTAGT 59.166 40.000 0.00 0.00 0.00 2.73
3094 5038 7.504574 TCATGAATCGGGATTAGTGAGTAGTTA 59.495 37.037 0.00 0.00 0.00 2.24
3095 5039 7.834881 TGAATCGGGATTAGTGAGTAGTTAT 57.165 36.000 0.00 0.00 0.00 1.89
3096 5040 8.246430 TGAATCGGGATTAGTGAGTAGTTATT 57.754 34.615 0.00 0.00 0.00 1.40
3097 5041 8.358148 TGAATCGGGATTAGTGAGTAGTTATTC 58.642 37.037 0.00 0.00 0.00 1.75
3098 5042 6.309712 TCGGGATTAGTGAGTAGTTATTCG 57.690 41.667 0.00 0.00 0.00 3.34
3099 5043 5.824624 TCGGGATTAGTGAGTAGTTATTCGT 59.175 40.000 0.00 0.00 0.00 3.85
3100 5044 6.319658 TCGGGATTAGTGAGTAGTTATTCGTT 59.680 38.462 0.00 0.00 0.00 3.85
3101 5045 6.636044 CGGGATTAGTGAGTAGTTATTCGTTC 59.364 42.308 0.00 0.00 0.00 3.95
3102 5046 6.922407 GGGATTAGTGAGTAGTTATTCGTTCC 59.078 42.308 0.00 0.00 0.00 3.62
3107 5051 4.863131 GTGAGTAGTTATTCGTTCCCACAG 59.137 45.833 0.00 0.00 0.00 3.66
3127 5071 7.148289 CCCACAGCATCATCAACTATTATCATC 60.148 40.741 0.00 0.00 0.00 2.92
3128 5072 7.412672 CCACAGCATCATCAACTATTATCATCG 60.413 40.741 0.00 0.00 0.00 3.84
3130 5074 5.583854 AGCATCATCAACTATTATCATCGGC 59.416 40.000 0.00 0.00 0.00 5.54
3143 5087 0.168128 CATCGGCGAACCTGGAAAAC 59.832 55.000 15.93 0.00 0.00 2.43
3151 5095 2.745152 CGAACCTGGAAAACTGACCACT 60.745 50.000 0.00 0.00 32.44 4.00
3165 5115 3.239449 TGACCACTTGACTGTACCTCAT 58.761 45.455 0.00 0.00 0.00 2.90
3168 5118 5.127194 TGACCACTTGACTGTACCTCATATC 59.873 44.000 0.00 0.00 0.00 1.63
3185 5136 7.960861 ACCTCATATCTATCCCTTCTTTCAGAT 59.039 37.037 0.00 0.00 0.00 2.90
3197 5148 9.581289 TCCCTTCTTTCAGATAATCTAGTCTAG 57.419 37.037 0.00 0.00 0.00 2.43
3208 5159 9.899661 AGATAATCTAGTCTAGTGCACCTATAG 57.100 37.037 14.63 9.26 0.00 1.31
3242 5193 7.754851 AACAAGTTATGAATCCCTAAAACGT 57.245 32.000 0.00 0.00 0.00 3.99
3243 5194 8.851541 AACAAGTTATGAATCCCTAAAACGTA 57.148 30.769 0.00 0.00 0.00 3.57
3244 5195 9.457436 AACAAGTTATGAATCCCTAAAACGTAT 57.543 29.630 0.00 0.00 0.00 3.06
3251 5202 8.888579 ATGAATCCCTAAAACGTATACTTGAG 57.111 34.615 0.56 0.00 0.00 3.02
3253 5204 6.803366 ATCCCTAAAACGTATACTTGAGGT 57.197 37.500 0.56 0.00 0.00 3.85
3255 5206 6.400568 TCCCTAAAACGTATACTTGAGGTTG 58.599 40.000 0.56 0.00 0.00 3.77
3256 5207 6.211184 TCCCTAAAACGTATACTTGAGGTTGA 59.789 38.462 0.56 0.00 0.00 3.18
3257 5208 6.875195 CCCTAAAACGTATACTTGAGGTTGAA 59.125 38.462 0.56 0.00 0.00 2.69
3274 5257 4.142513 GGTTGAAATTTTTGTTTGCAGGCA 60.143 37.500 0.00 0.00 0.00 4.75
3280 5263 0.459237 TTTGTTTGCAGGCACCGTTG 60.459 50.000 0.00 0.00 0.00 4.10
3306 5289 5.878332 AAGCATTTGATCGTGTGTATGAA 57.122 34.783 0.00 0.00 0.00 2.57
3307 5290 5.475273 AGCATTTGATCGTGTGTATGAAG 57.525 39.130 0.00 0.00 0.00 3.02
3309 5292 3.989705 TTTGATCGTGTGTATGAAGCG 57.010 42.857 0.00 0.00 0.00 4.68
3311 5294 0.577269 GATCGTGTGTATGAAGCGGC 59.423 55.000 0.00 0.00 0.00 6.53
3312 5295 0.810031 ATCGTGTGTATGAAGCGGCC 60.810 55.000 0.00 0.00 0.00 6.13
3313 5296 1.739929 CGTGTGTATGAAGCGGCCA 60.740 57.895 2.24 0.00 0.00 5.36
3314 5297 1.295357 CGTGTGTATGAAGCGGCCAA 61.295 55.000 2.24 0.00 0.00 4.52
3315 5298 0.447801 GTGTGTATGAAGCGGCCAAG 59.552 55.000 2.24 0.00 0.00 3.61
3316 5299 0.676466 TGTGTATGAAGCGGCCAAGG 60.676 55.000 2.24 0.00 0.00 3.61
3317 5300 0.392461 GTGTATGAAGCGGCCAAGGA 60.392 55.000 2.24 0.00 0.00 3.36
3319 5302 1.153168 TATGAAGCGGCCAAGGAGC 60.153 57.895 2.24 0.00 0.00 4.70
3320 5303 1.909459 TATGAAGCGGCCAAGGAGCA 61.909 55.000 2.24 0.00 0.00 4.26
3321 5304 2.672996 GAAGCGGCCAAGGAGCAA 60.673 61.111 2.24 0.00 0.00 3.91
3323 5306 1.805428 GAAGCGGCCAAGGAGCAAAA 61.805 55.000 2.24 0.00 0.00 2.44
3336 5373 6.366877 CCAAGGAGCAAAATTTGTGTATGAAG 59.633 38.462 7.60 0.00 0.00 3.02
3338 5375 4.324402 GGAGCAAAATTTGTGTATGAAGCG 59.676 41.667 7.60 0.00 0.00 4.68
3387 5424 1.535462 GGACGGAAACCTGATGTTGTG 59.465 52.381 0.00 0.00 37.23 3.33
3388 5425 2.218603 GACGGAAACCTGATGTTGTGT 58.781 47.619 0.00 0.00 37.23 3.72
3393 5430 4.359706 GGAAACCTGATGTTGTGTTGTTC 58.640 43.478 0.00 0.00 37.23 3.18
3394 5431 4.142271 GGAAACCTGATGTTGTGTTGTTCA 60.142 41.667 0.00 0.00 37.23 3.18
3395 5432 4.370364 AACCTGATGTTGTGTTGTTCAC 57.630 40.909 0.00 0.00 46.31 3.18
3397 5434 2.951642 CCTGATGTTGTGTTGTTCACCT 59.048 45.455 0.00 0.00 45.61 4.00
3398 5435 4.133820 CCTGATGTTGTGTTGTTCACCTA 58.866 43.478 0.00 0.00 45.61 3.08
3427 5472 4.756642 CGTAGGTTGTCGGGTGTAGATATA 59.243 45.833 0.00 0.00 0.00 0.86
3438 5483 4.279169 GGGTGTAGATATACCGTGCTGTAA 59.721 45.833 0.00 0.00 38.24 2.41
3447 5492 2.143122 ACCGTGCTGTAACTTGATGTG 58.857 47.619 0.00 0.00 0.00 3.21
3448 5493 1.464608 CCGTGCTGTAACTTGATGTGG 59.535 52.381 0.00 0.00 0.00 4.17
3450 5495 2.096268 CGTGCTGTAACTTGATGTGGTG 60.096 50.000 0.00 0.00 0.00 4.17
3452 5497 3.058914 GTGCTGTAACTTGATGTGGTGTC 60.059 47.826 0.00 0.00 0.00 3.67
3464 5509 1.227943 TGGTGTCTCTTGCTGTGGC 60.228 57.895 0.00 0.00 39.26 5.01
3477 5522 3.661944 TGCTGTGGCAATAAAAATGGTG 58.338 40.909 0.00 0.00 46.36 4.17
3478 5523 3.002102 GCTGTGGCAATAAAAATGGTGG 58.998 45.455 0.00 0.00 38.54 4.61
3479 5524 3.002102 CTGTGGCAATAAAAATGGTGGC 58.998 45.455 0.00 0.00 37.09 5.01
3480 5525 1.999024 GTGGCAATAAAAATGGTGGCG 59.001 47.619 0.00 0.00 39.27 5.69
3482 5527 1.205893 GGCAATAAAAATGGTGGCGGA 59.794 47.619 0.00 0.00 0.00 5.54
3483 5528 2.158971 GGCAATAAAAATGGTGGCGGAT 60.159 45.455 0.00 0.00 0.00 4.18
3484 5529 3.123050 GCAATAAAAATGGTGGCGGATC 58.877 45.455 0.00 0.00 0.00 3.36
3485 5530 3.430098 GCAATAAAAATGGTGGCGGATCA 60.430 43.478 0.00 0.00 0.00 2.92
3486 5531 4.111916 CAATAAAAATGGTGGCGGATCAC 58.888 43.478 0.00 0.00 36.95 3.06
3489 5534 0.327924 AAATGGTGGCGGATCACTGA 59.672 50.000 0.00 0.00 37.75 3.41
3490 5535 0.548031 AATGGTGGCGGATCACTGAT 59.452 50.000 0.00 0.00 37.75 2.90
3491 5536 1.423584 ATGGTGGCGGATCACTGATA 58.576 50.000 0.00 0.00 37.75 2.15
3492 5537 0.752658 TGGTGGCGGATCACTGATAG 59.247 55.000 0.00 0.00 37.75 2.08
3493 5538 1.040646 GGTGGCGGATCACTGATAGA 58.959 55.000 0.00 0.00 37.75 1.98
3494 5539 1.620819 GGTGGCGGATCACTGATAGAT 59.379 52.381 0.00 0.00 37.75 1.98
3495 5540 2.611473 GGTGGCGGATCACTGATAGATG 60.611 54.545 0.00 0.00 37.75 2.90
3496 5541 2.297315 GTGGCGGATCACTGATAGATGA 59.703 50.000 0.00 0.00 34.98 2.92
3497 5542 2.560105 TGGCGGATCACTGATAGATGAG 59.440 50.000 0.00 0.00 0.00 2.90
3498 5543 2.560542 GGCGGATCACTGATAGATGAGT 59.439 50.000 0.00 0.00 0.00 3.41
3499 5544 3.759086 GGCGGATCACTGATAGATGAGTA 59.241 47.826 0.00 0.00 0.00 2.59
3500 5545 4.218635 GGCGGATCACTGATAGATGAGTAA 59.781 45.833 0.00 0.00 0.00 2.24
3501 5546 5.279006 GGCGGATCACTGATAGATGAGTAAA 60.279 44.000 0.00 0.00 0.00 2.01
3502 5547 6.216569 GCGGATCACTGATAGATGAGTAAAA 58.783 40.000 0.00 0.00 0.00 1.52
3503 5548 6.701841 GCGGATCACTGATAGATGAGTAAAAA 59.298 38.462 0.00 0.00 0.00 1.94
3504 5549 7.095857 GCGGATCACTGATAGATGAGTAAAAAG 60.096 40.741 0.00 0.00 0.00 2.27
3505 5550 8.138074 CGGATCACTGATAGATGAGTAAAAAGA 58.862 37.037 0.00 0.00 0.00 2.52
3506 5551 9.255304 GGATCACTGATAGATGAGTAAAAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
3507 5552 9.809096 GATCACTGATAGATGAGTAAAAAGACA 57.191 33.333 0.00 0.00 0.00 3.41
3508 5553 8.988064 TCACTGATAGATGAGTAAAAAGACAC 57.012 34.615 0.00 0.00 0.00 3.67
3509 5554 8.807118 TCACTGATAGATGAGTAAAAAGACACT 58.193 33.333 0.00 0.00 0.00 3.55
3512 5557 9.522804 CTGATAGATGAGTAAAAAGACACTACC 57.477 37.037 0.00 0.00 0.00 3.18
3513 5558 9.256228 TGATAGATGAGTAAAAAGACACTACCT 57.744 33.333 0.00 0.00 0.00 3.08
3578 5626 9.791820 CAAGTTCTGCACATCAAATATAAATCA 57.208 29.630 0.00 0.00 0.00 2.57
3584 5632 9.394477 CTGCACATCAAATATAAATCATCAGTG 57.606 33.333 0.00 0.00 0.00 3.66
3600 5648 9.516546 AATCATCAGTGATGTATAATTCATGCT 57.483 29.630 28.03 0.82 44.20 3.79
3620 5680 9.788889 TCATGCTCATCAAGATTATTATGAAGT 57.211 29.630 0.00 0.00 0.00 3.01
3627 5687 8.939929 CATCAAGATTATTATGAAGTACCGCAT 58.060 33.333 3.85 3.85 0.00 4.73
3631 5691 5.922739 TTATTATGAAGTACCGCATGCTG 57.077 39.130 17.13 12.36 0.00 4.41
3675 5735 9.707957 ATAGGGTTCGATCATCTAGAATCTATT 57.292 33.333 0.00 0.00 0.00 1.73
3677 5737 8.310382 AGGGTTCGATCATCTAGAATCTATTTG 58.690 37.037 0.00 0.00 0.00 2.32
3682 5742 7.277319 TCGATCATCTAGAATCTATTTGCATGC 59.723 37.037 11.82 11.82 0.00 4.06
3683 5743 7.278203 CGATCATCTAGAATCTATTTGCATGCT 59.722 37.037 20.33 0.40 0.00 3.79
3697 5757 4.853924 TGCATGCTTATCAGACGATCTA 57.146 40.909 20.33 0.00 32.73 1.98
3700 5760 4.032672 GCATGCTTATCAGACGATCTATGC 59.967 45.833 11.37 0.00 32.01 3.14
3713 5773 5.347342 ACGATCTATGCTGAGAAGAAACAG 58.653 41.667 0.00 0.00 37.22 3.16
3725 5785 6.959361 TGAGAAGAAACAGAATGCTTGTAAC 58.041 36.000 0.00 0.00 42.53 2.50
3726 5786 5.990408 AGAAGAAACAGAATGCTTGTAACG 58.010 37.500 0.00 0.00 42.53 3.18
3727 5787 5.758296 AGAAGAAACAGAATGCTTGTAACGA 59.242 36.000 0.00 0.00 42.53 3.85
3728 5788 5.597813 AGAAACAGAATGCTTGTAACGAG 57.402 39.130 0.00 0.00 42.53 4.18
3729 5789 5.057149 AGAAACAGAATGCTTGTAACGAGT 58.943 37.500 0.00 0.00 42.53 4.18
3730 5790 4.732285 AACAGAATGCTTGTAACGAGTG 57.268 40.909 0.00 0.00 42.53 3.51
3731 5791 3.990092 ACAGAATGCTTGTAACGAGTGA 58.010 40.909 0.00 0.00 42.53 3.41
3732 5792 3.741344 ACAGAATGCTTGTAACGAGTGAC 59.259 43.478 0.00 0.00 42.53 3.67
3733 5793 3.123621 CAGAATGCTTGTAACGAGTGACC 59.876 47.826 0.00 0.00 0.00 4.02
3734 5794 2.094762 ATGCTTGTAACGAGTGACCC 57.905 50.000 0.00 0.00 0.00 4.46
3735 5795 1.045407 TGCTTGTAACGAGTGACCCT 58.955 50.000 0.00 0.00 0.00 4.34
3736 5796 1.414919 TGCTTGTAACGAGTGACCCTT 59.585 47.619 0.00 0.00 0.00 3.95
3737 5797 1.798813 GCTTGTAACGAGTGACCCTTG 59.201 52.381 0.00 0.00 0.00 3.61
3738 5798 2.805657 GCTTGTAACGAGTGACCCTTGT 60.806 50.000 0.00 0.00 39.65 3.16
3739 5799 2.806608 TGTAACGAGTGACCCTTGTC 57.193 50.000 0.00 0.00 36.75 3.18
3740 5800 2.313317 TGTAACGAGTGACCCTTGTCT 58.687 47.619 0.00 0.00 42.28 3.41
3741 5801 2.295349 TGTAACGAGTGACCCTTGTCTC 59.705 50.000 0.00 0.00 42.28 3.36
3742 5802 1.410004 AACGAGTGACCCTTGTCTCA 58.590 50.000 0.00 0.00 42.28 3.27
3743 5803 1.410004 ACGAGTGACCCTTGTCTCAA 58.590 50.000 0.00 0.00 42.28 3.02
3744 5804 1.760613 ACGAGTGACCCTTGTCTCAAA 59.239 47.619 0.00 0.00 42.28 2.69
3745 5805 2.368875 ACGAGTGACCCTTGTCTCAAAT 59.631 45.455 0.00 0.00 42.28 2.32
3746 5806 2.738846 CGAGTGACCCTTGTCTCAAATG 59.261 50.000 0.00 0.00 42.28 2.32
3747 5807 3.554960 CGAGTGACCCTTGTCTCAAATGA 60.555 47.826 0.00 0.00 42.28 2.57
3748 5808 3.999663 GAGTGACCCTTGTCTCAAATGAG 59.000 47.826 3.99 3.99 42.28 2.90
3749 5809 3.392616 AGTGACCCTTGTCTCAAATGAGT 59.607 43.478 10.06 0.00 42.28 3.41
3750 5810 4.137543 GTGACCCTTGTCTCAAATGAGTT 58.862 43.478 10.06 0.00 42.28 3.01
3751 5811 4.580580 GTGACCCTTGTCTCAAATGAGTTT 59.419 41.667 10.06 0.00 42.28 2.66
3752 5812 5.763204 GTGACCCTTGTCTCAAATGAGTTTA 59.237 40.000 10.06 0.00 42.28 2.01
3753 5813 6.262273 GTGACCCTTGTCTCAAATGAGTTTAA 59.738 38.462 10.06 4.16 42.28 1.52
3754 5814 6.262273 TGACCCTTGTCTCAAATGAGTTTAAC 59.738 38.462 10.06 2.30 42.28 2.01
3755 5815 6.365520 ACCCTTGTCTCAAATGAGTTTAACT 58.634 36.000 10.06 0.00 42.60 2.24
3756 5816 7.514721 ACCCTTGTCTCAAATGAGTTTAACTA 58.485 34.615 10.06 0.00 42.60 2.24
3757 5817 7.996644 ACCCTTGTCTCAAATGAGTTTAACTAA 59.003 33.333 10.06 0.00 42.60 2.24
3758 5818 9.014297 CCCTTGTCTCAAATGAGTTTAACTAAT 57.986 33.333 10.06 0.00 42.60 1.73
3778 5838 9.649167 AACTAATTAGAAAAGTATACGCACTGT 57.351 29.630 19.38 0.00 0.00 3.55
3779 5839 9.298774 ACTAATTAGAAAAGTATACGCACTGTC 57.701 33.333 19.38 0.00 0.00 3.51
3780 5840 7.535489 AATTAGAAAAGTATACGCACTGTCC 57.465 36.000 0.00 0.00 0.00 4.02
3781 5841 3.858247 AGAAAAGTATACGCACTGTCCC 58.142 45.455 0.00 0.00 0.00 4.46
3782 5842 3.259876 AGAAAAGTATACGCACTGTCCCA 59.740 43.478 0.00 0.00 0.00 4.37
3783 5843 2.667473 AAGTATACGCACTGTCCCAC 57.333 50.000 0.00 0.00 0.00 4.61
3784 5844 1.552578 AGTATACGCACTGTCCCACA 58.447 50.000 0.00 0.00 0.00 4.17
3785 5845 1.897133 AGTATACGCACTGTCCCACAA 59.103 47.619 0.00 0.00 0.00 3.33
3786 5846 2.094182 AGTATACGCACTGTCCCACAAG 60.094 50.000 0.00 0.00 0.00 3.16
3787 5847 0.973632 ATACGCACTGTCCCACAAGA 59.026 50.000 0.00 0.00 0.00 3.02
3788 5848 0.973632 TACGCACTGTCCCACAAGAT 59.026 50.000 0.00 0.00 0.00 2.40
3789 5849 0.108585 ACGCACTGTCCCACAAGATT 59.891 50.000 0.00 0.00 0.00 2.40
3790 5850 1.238439 CGCACTGTCCCACAAGATTT 58.762 50.000 0.00 0.00 0.00 2.17
3791 5851 1.608590 CGCACTGTCCCACAAGATTTT 59.391 47.619 0.00 0.00 0.00 1.82
3792 5852 2.034558 CGCACTGTCCCACAAGATTTTT 59.965 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.636003 AGAGGATTCCAGAACCAACCC 59.364 52.381 5.29 0.00 0.00 4.11
71 72 2.619074 CCAGAGGATTCCAGAACCAACC 60.619 54.545 5.29 0.00 0.00 3.77
128 137 8.337739 GGAGGAGAAAGAGTATATATGGGACTA 58.662 40.741 0.00 0.00 0.00 2.59
129 138 7.020168 AGGAGGAGAAAGAGTATATATGGGACT 59.980 40.741 0.00 0.00 0.00 3.85
130 139 7.186268 AGGAGGAGAAAGAGTATATATGGGAC 58.814 42.308 0.00 0.00 0.00 4.46
131 140 7.363759 AGGAGGAGAAAGAGTATATATGGGA 57.636 40.000 0.00 0.00 0.00 4.37
132 141 6.609616 GGAGGAGGAGAAAGAGTATATATGGG 59.390 46.154 0.00 0.00 0.00 4.00
133 142 7.341769 CAGGAGGAGGAGAAAGAGTATATATGG 59.658 44.444 0.00 0.00 0.00 2.74
134 143 7.147915 GCAGGAGGAGGAGAAAGAGTATATATG 60.148 44.444 0.00 0.00 0.00 1.78
135 144 6.895204 GCAGGAGGAGGAGAAAGAGTATATAT 59.105 42.308 0.00 0.00 0.00 0.86
136 145 6.249951 GCAGGAGGAGGAGAAAGAGTATATA 58.750 44.000 0.00 0.00 0.00 0.86
137 146 5.083821 GCAGGAGGAGGAGAAAGAGTATAT 58.916 45.833 0.00 0.00 0.00 0.86
138 147 4.475345 GCAGGAGGAGGAGAAAGAGTATA 58.525 47.826 0.00 0.00 0.00 1.47
139 148 3.304829 GCAGGAGGAGGAGAAAGAGTAT 58.695 50.000 0.00 0.00 0.00 2.12
140 149 2.624557 GGCAGGAGGAGGAGAAAGAGTA 60.625 54.545 0.00 0.00 0.00 2.59
141 150 1.567357 GCAGGAGGAGGAGAAAGAGT 58.433 55.000 0.00 0.00 0.00 3.24
244 258 2.701780 GGAGAAGTGAGCGCGAGGA 61.702 63.158 12.10 0.00 0.00 3.71
285 299 5.851720 TCAGGTCTATGAGATGAGATTTGC 58.148 41.667 0.00 0.00 0.00 3.68
353 377 1.064296 CGACGTGATTCGAGGGAGG 59.936 63.158 0.00 0.00 41.78 4.30
388 412 1.134907 AGTAACAACGGGCATACGAGG 60.135 52.381 0.00 0.00 37.61 4.63
396 420 0.602905 ACAGAGCAGTAACAACGGGC 60.603 55.000 0.00 0.00 0.00 6.13
430 457 0.378257 CGCCATGAACCAAATCGGAG 59.622 55.000 0.00 0.00 38.63 4.63
449 476 1.015143 GTGAATAACGTCGCGTCGC 60.015 57.895 24.76 7.29 39.99 5.19
450 477 0.704008 TTGTGAATAACGTCGCGTCG 59.296 50.000 23.39 23.39 39.99 5.12
451 478 1.980844 TCTTGTGAATAACGTCGCGTC 59.019 47.619 5.77 0.00 39.99 5.19
452 479 1.983605 CTCTTGTGAATAACGTCGCGT 59.016 47.619 5.77 0.00 43.97 6.01
453 480 2.247637 TCTCTTGTGAATAACGTCGCG 58.752 47.619 0.00 0.00 0.00 5.87
535 569 2.742774 CACGATGCCAATCATACGAGA 58.257 47.619 0.00 0.00 35.05 4.04
538 572 3.734683 GCACGATGCCAATCATACG 57.265 52.632 0.00 0.00 37.42 3.06
574 629 8.285394 CCAACATTCAGAAGTTATCCGATTATG 58.715 37.037 0.00 0.00 0.00 1.90
581 636 3.065371 CGCCCAACATTCAGAAGTTATCC 59.935 47.826 0.00 0.00 0.00 2.59
615 670 6.406624 CCAAGCAGAGGAAGCAAATGATTATT 60.407 38.462 0.00 0.00 0.00 1.40
632 688 8.593945 AACTAAATTATGAATTCCCAAGCAGA 57.406 30.769 2.27 0.00 0.00 4.26
706 2491 1.533731 CACAACGCGTGGTATCCTTTT 59.466 47.619 20.89 0.00 42.34 2.27
735 2522 1.067283 ACTGACAGACTCGATTGCCTG 60.067 52.381 10.08 0.00 0.00 4.85
766 2553 3.464907 CACTCCCAAGCATACTCTCATG 58.535 50.000 0.00 0.00 0.00 3.07
767 2554 2.158842 GCACTCCCAAGCATACTCTCAT 60.159 50.000 0.00 0.00 0.00 2.90
774 2561 1.561076 ACATCTGCACTCCCAAGCATA 59.439 47.619 0.00 0.00 40.42 3.14
807 2595 1.675552 ACACTGCCCACAACAAGTAC 58.324 50.000 0.00 0.00 0.00 2.73
820 2608 3.007635 AGGTATTAAGCCGAAACACTGC 58.992 45.455 0.00 0.00 0.00 4.40
859 2659 6.094061 GTCCAGTTGACATCTAGTACTCAAC 58.906 44.000 12.94 12.94 43.85 3.18
916 2722 9.555727 AACATGATACCGCTGTTTTATACTTAT 57.444 29.630 0.00 0.00 29.06 1.73
919 2725 6.482308 GGAACATGATACCGCTGTTTTATACT 59.518 38.462 0.00 0.00 33.46 2.12
920 2726 6.259167 TGGAACATGATACCGCTGTTTTATAC 59.741 38.462 0.00 0.00 33.46 1.47
921 2727 6.259167 GTGGAACATGATACCGCTGTTTTATA 59.741 38.462 0.00 0.00 44.52 0.98
922 2728 5.065988 GTGGAACATGATACCGCTGTTTTAT 59.934 40.000 0.00 0.00 44.52 1.40
1021 2840 1.421485 CAGATCGCCGCAAACAGAC 59.579 57.895 0.00 0.00 0.00 3.51
1067 2886 1.774254 TGGCTCCTCCTTGAAACTGAA 59.226 47.619 0.00 0.00 35.26 3.02
1152 2971 8.178313 TCTTATTATGAGAAGAATCGGCTACA 57.822 34.615 0.00 0.00 30.58 2.74
1197 3016 5.737635 GCTGACAAAGTACTTCAGACTCTGT 60.738 44.000 21.89 14.74 39.36 3.41
1266 3085 3.254903 TGTCGAGCTTTGCAGTTAGACTA 59.745 43.478 0.00 0.00 36.98 2.59
1274 3093 2.168947 AGCATGTCGAGCTTTGCAG 58.831 52.632 10.32 0.00 39.87 4.41
1302 3121 8.466798 CATTTCCAACTAATACCCGAGATTTTT 58.533 33.333 0.00 0.00 0.00 1.94
1304 3123 6.546034 CCATTTCCAACTAATACCCGAGATTT 59.454 38.462 0.00 0.00 0.00 2.17
1308 3127 4.134563 CCCATTTCCAACTAATACCCGAG 58.865 47.826 0.00 0.00 0.00 4.63
1316 3135 2.178106 ACACCACCCCATTTCCAACTAA 59.822 45.455 0.00 0.00 0.00 2.24
1319 3138 0.678950 CACACCACCCCATTTCCAAC 59.321 55.000 0.00 0.00 0.00 3.77
1330 3149 2.119801 ATCTTCTGATGCACACCACC 57.880 50.000 0.00 0.00 0.00 4.61
1332 3151 3.106827 TCCTATCTTCTGATGCACACCA 58.893 45.455 0.00 0.00 34.32 4.17
1335 3154 3.036819 AGCTCCTATCTTCTGATGCACA 58.963 45.455 0.00 0.00 34.32 4.57
1338 3157 3.366883 CCGTAGCTCCTATCTTCTGATGC 60.367 52.174 0.00 0.00 34.32 3.91
1443 3262 4.445305 CCATGGGAAGATGATGCTGAAGTA 60.445 45.833 2.85 0.00 0.00 2.24
1552 3371 9.638239 CCGCAAACATAAATATTATAAAGGCAT 57.362 29.630 0.00 0.00 0.00 4.40
1571 3390 5.424121 AGCTTATTGACATATCCGCAAAC 57.576 39.130 0.00 0.00 0.00 2.93
1575 3394 5.563842 GCATTAGCTTATTGACATATCCGC 58.436 41.667 0.00 0.00 37.91 5.54
1595 3423 3.569701 CCAGGTAAAACAGTCACAAGCAT 59.430 43.478 0.00 0.00 0.00 3.79
1643 3471 2.936498 CACGGAGCGGAATAAACATCTT 59.064 45.455 0.00 0.00 0.00 2.40
1649 3477 1.002201 TGAACCACGGAGCGGAATAAA 59.998 47.619 0.00 0.00 31.69 1.40
1710 3538 6.548993 TCATCAGCTAGCTTTCTCTGAAGATA 59.451 38.462 16.46 0.00 38.81 1.98
1755 3583 5.705905 AGCAAAATACCTAGAAACACTCCAC 59.294 40.000 0.00 0.00 0.00 4.02
1778 3606 0.606604 AAAGGCAATTGCAGCAGGAG 59.393 50.000 30.32 0.00 44.36 3.69
1784 3612 4.451629 AGAGAATGAAAGGCAATTGCAG 57.548 40.909 30.32 0.00 44.36 4.41
1825 3653 0.973632 TCGGCAACCTGTACAGTGAT 59.026 50.000 21.18 5.35 0.00 3.06
1828 3656 0.973632 TCATCGGCAACCTGTACAGT 59.026 50.000 21.18 7.09 0.00 3.55
1829 3657 2.093306 TTCATCGGCAACCTGTACAG 57.907 50.000 16.34 16.34 0.00 2.74
1890 3718 5.409826 AGAGCAAACATAACAGTAAGAGTGC 59.590 40.000 0.00 0.00 0.00 4.40
1918 3746 9.141400 TCAATACCGCATTTACATTTTAAAACC 57.859 29.630 1.97 0.00 0.00 3.27
2021 3852 7.106890 TCTGGGAAACGTATGTATCAAAATCA 58.893 34.615 0.00 0.00 0.00 2.57
2091 3922 5.552870 ACTTACTGGAGAACATGTGAAGT 57.447 39.130 0.00 1.88 0.00 3.01
2195 4026 9.959749 GCTCCACAGATATAGATATTAGCTAAC 57.040 37.037 8.70 0.00 0.00 2.34
2220 4051 8.184192 TCAACTCTTTGCATTAAGCTATTTAGC 58.816 33.333 1.21 1.21 45.94 3.09
2221 4052 9.495754 GTCAACTCTTTGCATTAAGCTATTTAG 57.504 33.333 0.00 0.00 45.94 1.85
2222 4053 9.231297 AGTCAACTCTTTGCATTAAGCTATTTA 57.769 29.630 0.00 0.00 45.94 1.40
2223 4054 8.115490 AGTCAACTCTTTGCATTAAGCTATTT 57.885 30.769 0.00 0.00 45.94 1.40
2225 4056 7.313951 GAGTCAACTCTTTGCATTAAGCTAT 57.686 36.000 2.86 0.00 41.00 2.97
2226 4057 6.727824 GAGTCAACTCTTTGCATTAAGCTA 57.272 37.500 2.86 0.00 41.00 3.32
2240 4071 4.923871 TCGCAGACAAAATAGAGTCAACTC 59.076 41.667 1.79 1.79 43.17 3.01
2241 4072 4.883083 TCGCAGACAAAATAGAGTCAACT 58.117 39.130 0.00 0.00 37.23 3.16
2263 4094 7.195374 TCACATAAGCATAGTAGGAAAAGGT 57.805 36.000 0.00 0.00 0.00 3.50
2324 4155 8.697507 ATTCCTAGGAAGCAAATATTTCGAAT 57.302 30.769 27.58 3.97 37.56 3.34
2352 4183 9.520515 AGGTTGTGTACTCAATCTATTTTGAAT 57.479 29.630 19.27 0.00 37.06 2.57
2353 4184 8.918202 AGGTTGTGTACTCAATCTATTTTGAA 57.082 30.769 19.27 0.00 37.06 2.69
2354 4185 8.918202 AAGGTTGTGTACTCAATCTATTTTGA 57.082 30.769 20.59 0.00 37.73 2.69
2355 4186 8.783093 TGAAGGTTGTGTACTCAATCTATTTTG 58.217 33.333 20.59 0.00 37.73 2.44
2356 4187 8.918202 TGAAGGTTGTGTACTCAATCTATTTT 57.082 30.769 20.59 7.94 37.73 1.82
2357 4188 8.157476 ACTGAAGGTTGTGTACTCAATCTATTT 58.843 33.333 20.59 8.26 37.73 1.40
2358 4189 7.604164 CACTGAAGGTTGTGTACTCAATCTATT 59.396 37.037 20.59 8.90 37.73 1.73
2359 4190 7.039011 TCACTGAAGGTTGTGTACTCAATCTAT 60.039 37.037 20.59 12.46 37.73 1.98
2360 4191 6.266786 TCACTGAAGGTTGTGTACTCAATCTA 59.733 38.462 20.59 8.17 37.73 1.98
2361 4192 5.070446 TCACTGAAGGTTGTGTACTCAATCT 59.930 40.000 15.93 15.93 40.02 2.40
2362 4193 5.297547 TCACTGAAGGTTGTGTACTCAATC 58.702 41.667 13.06 12.54 35.82 2.67
2363 4194 5.290493 TCACTGAAGGTTGTGTACTCAAT 57.710 39.130 13.06 0.00 35.82 2.57
2364 4195 4.746535 TCACTGAAGGTTGTGTACTCAA 57.253 40.909 6.27 6.27 35.82 3.02
2365 4196 4.161565 ACTTCACTGAAGGTTGTGTACTCA 59.838 41.667 20.58 0.00 43.25 3.41
2366 4197 4.694339 ACTTCACTGAAGGTTGTGTACTC 58.306 43.478 20.58 0.00 43.25 2.59
2367 4198 4.755266 ACTTCACTGAAGGTTGTGTACT 57.245 40.909 20.58 0.00 43.25 2.73
2368 4199 4.035208 CCAACTTCACTGAAGGTTGTGTAC 59.965 45.833 20.58 0.00 43.25 2.90
2369 4200 4.196193 CCAACTTCACTGAAGGTTGTGTA 58.804 43.478 20.58 0.00 43.25 2.90
2370 4201 3.016736 CCAACTTCACTGAAGGTTGTGT 58.983 45.455 20.58 0.00 43.25 3.72
2371 4202 2.223572 GCCAACTTCACTGAAGGTTGTG 60.224 50.000 20.58 12.91 43.25 3.33
2372 4203 2.024414 GCCAACTTCACTGAAGGTTGT 58.976 47.619 20.58 0.29 43.25 3.32
2373 4204 2.301346 AGCCAACTTCACTGAAGGTTG 58.699 47.619 20.58 19.09 43.25 3.77
2374 4205 2.736670 AGCCAACTTCACTGAAGGTT 57.263 45.000 20.58 10.87 43.25 3.50
2375 4206 3.857157 TTAGCCAACTTCACTGAAGGT 57.143 42.857 20.58 13.13 43.25 3.50
2376 4207 5.335976 GGAATTTAGCCAACTTCACTGAAGG 60.336 44.000 20.58 7.33 43.25 3.46
2377 4208 5.241506 TGGAATTTAGCCAACTTCACTGAAG 59.758 40.000 16.01 16.01 44.37 3.02
2421 4252 8.041919 GCTCTTTTATTAGTTTACAGAGGGAGT 58.958 37.037 0.00 0.00 0.00 3.85
2422 4253 7.222999 CGCTCTTTTATTAGTTTACAGAGGGAG 59.777 40.741 4.76 0.00 40.49 4.30
2423 4254 7.039882 CGCTCTTTTATTAGTTTACAGAGGGA 58.960 38.462 4.76 0.00 40.49 4.20
2424 4255 6.817140 ACGCTCTTTTATTAGTTTACAGAGGG 59.183 38.462 8.36 8.36 42.53 4.30
2425 4256 7.829378 ACGCTCTTTTATTAGTTTACAGAGG 57.171 36.000 0.00 0.00 0.00 3.69
2433 4264 9.654663 AGTGATCTAAACGCTCTTTTATTAGTT 57.345 29.630 0.00 0.00 0.00 2.24
2437 4268 9.654663 AAGTAGTGATCTAAACGCTCTTTTATT 57.345 29.630 0.00 0.00 0.00 1.40
2438 4269 9.654663 AAAGTAGTGATCTAAACGCTCTTTTAT 57.345 29.630 0.00 0.00 30.02 1.40
2440 4271 7.964604 AAAGTAGTGATCTAAACGCTCTTTT 57.035 32.000 0.00 0.00 30.02 2.27
2441 4272 8.305317 ACTAAAGTAGTGATCTAAACGCTCTTT 58.695 33.333 0.00 0.00 37.69 2.52
2442 4273 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2443 4274 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2444 4275 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2445 4276 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2446 4277 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2476 4307 9.381038 TCCCTCAGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
2477 4308 8.777578 TCCCTCAGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
2478 4309 8.862085 ACTCCCTCAGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 31.37 4.09
2482 4313 9.878737 AGCTACTCCCTCAGTAAACTAATATAA 57.121 33.333 0.00 0.00 37.13 0.98
2484 4315 9.878737 TTAGCTACTCCCTCAGTAAACTAATAT 57.121 33.333 0.00 0.00 37.13 1.28
2485 4316 9.352191 CTTAGCTACTCCCTCAGTAAACTAATA 57.648 37.037 0.00 0.00 37.13 0.98
2486 4317 8.060075 TCTTAGCTACTCCCTCAGTAAACTAAT 58.940 37.037 0.00 0.00 37.13 1.73
2487 4318 7.408543 TCTTAGCTACTCCCTCAGTAAACTAA 58.591 38.462 0.00 0.00 37.13 2.24
2488 4319 6.966751 TCTTAGCTACTCCCTCAGTAAACTA 58.033 40.000 0.00 0.00 37.13 2.24
2489 4320 5.828871 TCTTAGCTACTCCCTCAGTAAACT 58.171 41.667 0.00 0.00 37.13 2.66
2490 4321 6.153170 ACTTCTTAGCTACTCCCTCAGTAAAC 59.847 42.308 0.00 0.00 37.13 2.01
2491 4322 6.254522 ACTTCTTAGCTACTCCCTCAGTAAA 58.745 40.000 0.00 0.00 37.13 2.01
2492 4323 5.828871 ACTTCTTAGCTACTCCCTCAGTAA 58.171 41.667 0.00 0.00 37.13 2.24
2493 4324 5.453866 ACTTCTTAGCTACTCCCTCAGTA 57.546 43.478 0.00 0.00 36.43 2.74
2494 4325 4.325084 ACTTCTTAGCTACTCCCTCAGT 57.675 45.455 0.00 0.00 39.41 3.41
2495 4326 4.953579 AGAACTTCTTAGCTACTCCCTCAG 59.046 45.833 0.00 0.00 0.00 3.35
2496 4327 4.936802 AGAACTTCTTAGCTACTCCCTCA 58.063 43.478 0.00 0.00 0.00 3.86
2497 4328 5.198207 AGAGAACTTCTTAGCTACTCCCTC 58.802 45.833 0.00 0.00 29.61 4.30
2498 4329 5.198207 GAGAGAACTTCTTAGCTACTCCCT 58.802 45.833 0.00 0.00 35.87 4.20
2499 4330 4.951094 TGAGAGAACTTCTTAGCTACTCCC 59.049 45.833 0.00 0.00 35.87 4.30
2500 4331 6.096282 ACATGAGAGAACTTCTTAGCTACTCC 59.904 42.308 0.00 0.00 35.87 3.85
2501 4332 7.095695 ACATGAGAGAACTTCTTAGCTACTC 57.904 40.000 0.00 0.00 35.87 2.59
2502 4333 7.475137 AACATGAGAGAACTTCTTAGCTACT 57.525 36.000 0.00 0.00 35.87 2.57
2503 4334 9.810545 ATTAACATGAGAGAACTTCTTAGCTAC 57.189 33.333 0.00 0.00 35.87 3.58
2519 4350 6.506500 ACCTTCTCTTTGCATTAACATGAG 57.493 37.500 0.00 0.00 31.07 2.90
2520 4351 6.071952 GGAACCTTCTCTTTGCATTAACATGA 60.072 38.462 0.00 0.00 31.07 3.07
2560 4391 2.263077 GTTGACCGAGTACTGAGCATG 58.737 52.381 0.00 0.00 0.00 4.06
2577 4408 5.702865 ACTGTACTGCTTAAATGCATGTTG 58.297 37.500 0.00 0.00 42.48 3.33
2717 4548 8.383175 AGAACTTGTATTGGATCTTCTTTACCA 58.617 33.333 0.00 0.00 0.00 3.25
2789 4620 1.553706 TCTTGTCTTCGGACCCCTAC 58.446 55.000 0.00 0.00 43.85 3.18
2805 4636 4.576879 GGACTCCCAATTTCTACGTTCTT 58.423 43.478 0.00 0.00 0.00 2.52
2807 4638 2.928116 CGGACTCCCAATTTCTACGTTC 59.072 50.000 0.00 0.00 0.00 3.95
2810 4641 2.426024 TCTCGGACTCCCAATTTCTACG 59.574 50.000 0.00 0.00 0.00 3.51
2811 4642 4.674281 ATCTCGGACTCCCAATTTCTAC 57.326 45.455 0.00 0.00 0.00 2.59
2817 4648 2.752030 TCTGAATCTCGGACTCCCAAT 58.248 47.619 0.00 0.00 0.00 3.16
2824 4655 3.738590 GCCTTACCTTCTGAATCTCGGAC 60.739 52.174 0.92 0.00 30.17 4.79
2826 4657 2.483889 GGCCTTACCTTCTGAATCTCGG 60.484 54.545 0.00 0.00 34.51 4.63
2867 4698 9.489084 CTCAACTAATATATCGACATGGGAAAA 57.511 33.333 0.00 0.00 0.00 2.29
2885 4716 6.038382 GTCTCACTCATCCGTATCTCAACTAA 59.962 42.308 0.00 0.00 0.00 2.24
2898 4729 1.064946 CTCGCCGTCTCACTCATCC 59.935 63.158 0.00 0.00 0.00 3.51
2947 4778 6.524101 TTTGCGGGAAGAAAGCTTAATAAT 57.476 33.333 0.00 0.00 33.61 1.28
2948 4779 5.968528 TTTGCGGGAAGAAAGCTTAATAA 57.031 34.783 0.00 0.00 33.61 1.40
2949 4780 5.968528 TTTTGCGGGAAGAAAGCTTAATA 57.031 34.783 0.00 0.00 33.61 0.98
2950 4781 4.864704 TTTTGCGGGAAGAAAGCTTAAT 57.135 36.364 0.00 0.00 33.61 1.40
2951 4782 4.657436 TTTTTGCGGGAAGAAAGCTTAA 57.343 36.364 0.00 0.00 33.61 1.85
2970 4801 8.606040 TGCTGCAAAGCTTAATAATTCTTTTT 57.394 26.923 0.00 0.00 35.49 1.94
2971 4802 8.782339 ATGCTGCAAAGCTTAATAATTCTTTT 57.218 26.923 6.36 0.00 35.49 2.27
2972 4803 8.782339 AATGCTGCAAAGCTTAATAATTCTTT 57.218 26.923 6.36 0.00 35.49 2.52
3009 4840 5.913137 ATGTGAAGTTGTTGTCCTTTTCA 57.087 34.783 0.00 0.00 0.00 2.69
3010 4841 6.918022 CCTAATGTGAAGTTGTTGTCCTTTTC 59.082 38.462 0.00 0.00 0.00 2.29
3011 4842 6.379988 ACCTAATGTGAAGTTGTTGTCCTTTT 59.620 34.615 0.00 0.00 0.00 2.27
3012 4843 5.891551 ACCTAATGTGAAGTTGTTGTCCTTT 59.108 36.000 0.00 0.00 0.00 3.11
3013 4844 5.445964 ACCTAATGTGAAGTTGTTGTCCTT 58.554 37.500 0.00 0.00 0.00 3.36
3014 4845 5.048846 ACCTAATGTGAAGTTGTTGTCCT 57.951 39.130 0.00 0.00 0.00 3.85
3015 4846 5.767816 AACCTAATGTGAAGTTGTTGTCC 57.232 39.130 0.00 0.00 0.00 4.02
3016 4847 7.757624 TGAAAAACCTAATGTGAAGTTGTTGTC 59.242 33.333 0.00 0.00 0.00 3.18
3017 4848 7.607250 TGAAAAACCTAATGTGAAGTTGTTGT 58.393 30.769 0.00 0.00 0.00 3.32
3018 4849 8.647143 ATGAAAAACCTAATGTGAAGTTGTTG 57.353 30.769 0.00 0.00 0.00 3.33
3060 5004 8.499162 CACTAATCCCGATTCATGATTTCTTAC 58.501 37.037 0.00 0.00 31.55 2.34
3061 5005 8.428852 TCACTAATCCCGATTCATGATTTCTTA 58.571 33.333 0.00 0.00 31.55 2.10
3071 5015 7.834881 ATAACTACTCACTAATCCCGATTCA 57.165 36.000 0.00 0.00 32.50 2.57
3077 5021 6.922407 GGAACGAATAACTACTCACTAATCCC 59.078 42.308 0.00 0.00 0.00 3.85
3087 5031 3.259876 TGCTGTGGGAACGAATAACTACT 59.740 43.478 0.00 0.00 0.00 2.57
3088 5032 3.592059 TGCTGTGGGAACGAATAACTAC 58.408 45.455 0.00 0.00 0.00 2.73
3089 5033 3.965379 TGCTGTGGGAACGAATAACTA 57.035 42.857 0.00 0.00 0.00 2.24
3090 5034 2.851263 TGCTGTGGGAACGAATAACT 57.149 45.000 0.00 0.00 0.00 2.24
3091 5035 3.006940 TGATGCTGTGGGAACGAATAAC 58.993 45.455 0.00 0.00 0.00 1.89
3092 5036 3.342377 TGATGCTGTGGGAACGAATAA 57.658 42.857 0.00 0.00 0.00 1.40
3094 5038 2.292267 GATGATGCTGTGGGAACGAAT 58.708 47.619 0.00 0.00 0.00 3.34
3095 5039 1.003003 TGATGATGCTGTGGGAACGAA 59.997 47.619 0.00 0.00 0.00 3.85
3096 5040 0.612744 TGATGATGCTGTGGGAACGA 59.387 50.000 0.00 0.00 0.00 3.85
3097 5041 1.131126 GTTGATGATGCTGTGGGAACG 59.869 52.381 0.00 0.00 0.00 3.95
3098 5042 2.440409 AGTTGATGATGCTGTGGGAAC 58.560 47.619 0.00 0.00 0.00 3.62
3099 5043 2.885135 AGTTGATGATGCTGTGGGAA 57.115 45.000 0.00 0.00 0.00 3.97
3100 5044 4.508551 AATAGTTGATGATGCTGTGGGA 57.491 40.909 0.00 0.00 0.00 4.37
3101 5045 5.999600 TGATAATAGTTGATGATGCTGTGGG 59.000 40.000 0.00 0.00 0.00 4.61
3102 5046 7.412672 CGATGATAATAGTTGATGATGCTGTGG 60.413 40.741 0.00 0.00 0.00 4.17
3107 5051 5.501413 CGCCGATGATAATAGTTGATGATGC 60.501 44.000 0.00 0.00 0.00 3.91
3127 5071 0.882927 TCAGTTTTCCAGGTTCGCCG 60.883 55.000 0.00 0.00 43.66 6.46
3128 5072 0.591659 GTCAGTTTTCCAGGTTCGCC 59.408 55.000 0.00 0.00 37.60 5.54
3130 5074 1.602377 GTGGTCAGTTTTCCAGGTTCG 59.398 52.381 0.00 0.00 34.16 3.95
3143 5087 2.628178 TGAGGTACAGTCAAGTGGTCAG 59.372 50.000 0.00 0.00 0.00 3.51
3151 5095 6.864421 AGGGATAGATATGAGGTACAGTCAA 58.136 40.000 0.00 0.00 0.00 3.18
3185 5136 7.459234 TGCTATAGGTGCACTAGACTAGATTA 58.541 38.462 17.98 0.00 35.31 1.75
3197 5148 9.307121 CTTGTTATAGATATGCTATAGGTGCAC 57.693 37.037 8.80 8.80 41.72 4.57
3228 5179 7.270779 ACCTCAAGTATACGTTTTAGGGATTC 58.729 38.462 0.00 0.00 0.00 2.52
3230 5181 6.803366 ACCTCAAGTATACGTTTTAGGGAT 57.197 37.500 0.00 0.00 0.00 3.85
3231 5182 6.211184 TCAACCTCAAGTATACGTTTTAGGGA 59.789 38.462 0.00 3.34 0.00 4.20
3232 5183 6.400568 TCAACCTCAAGTATACGTTTTAGGG 58.599 40.000 0.00 6.96 0.00 3.53
3233 5184 7.894376 TTCAACCTCAAGTATACGTTTTAGG 57.106 36.000 0.00 8.96 0.00 2.69
3238 5189 9.458374 CAAAAATTTCAACCTCAAGTATACGTT 57.542 29.630 0.00 0.00 0.00 3.99
3240 5191 9.458374 AACAAAAATTTCAACCTCAAGTATACG 57.542 29.630 0.00 0.00 0.00 3.06
3243 5194 8.611757 GCAAACAAAAATTTCAACCTCAAGTAT 58.388 29.630 0.00 0.00 0.00 2.12
3244 5195 7.604164 TGCAAACAAAAATTTCAACCTCAAGTA 59.396 29.630 0.00 0.00 0.00 2.24
3245 5196 6.429385 TGCAAACAAAAATTTCAACCTCAAGT 59.571 30.769 0.00 0.00 0.00 3.16
3246 5197 6.840075 TGCAAACAAAAATTTCAACCTCAAG 58.160 32.000 0.00 0.00 0.00 3.02
3247 5198 6.128063 CCTGCAAACAAAAATTTCAACCTCAA 60.128 34.615 0.00 0.00 0.00 3.02
3250 5201 4.096231 GCCTGCAAACAAAAATTTCAACCT 59.904 37.500 0.00 0.00 0.00 3.50
3251 5202 4.142513 TGCCTGCAAACAAAAATTTCAACC 60.143 37.500 0.00 0.00 0.00 3.77
3253 5204 4.142513 GGTGCCTGCAAACAAAAATTTCAA 60.143 37.500 0.00 0.00 0.00 2.69
3255 5206 3.545822 CGGTGCCTGCAAACAAAAATTTC 60.546 43.478 0.00 0.00 0.00 2.17
3256 5207 2.354199 CGGTGCCTGCAAACAAAAATTT 59.646 40.909 0.00 0.00 0.00 1.82
3257 5208 1.939255 CGGTGCCTGCAAACAAAAATT 59.061 42.857 0.00 0.00 0.00 1.82
3280 5263 3.052036 ACACACGATCAAATGCTTTTGC 58.948 40.909 17.79 6.45 41.66 3.68
3303 5286 2.974692 TTTGCTCCTTGGCCGCTTCA 62.975 55.000 0.00 0.00 0.00 3.02
3304 5287 1.805428 TTTTGCTCCTTGGCCGCTTC 61.805 55.000 0.00 0.00 0.00 3.86
3306 5289 1.187567 AATTTTGCTCCTTGGCCGCT 61.188 50.000 0.00 0.00 0.00 5.52
3307 5290 0.320683 AAATTTTGCTCCTTGGCCGC 60.321 50.000 0.00 0.00 0.00 6.53
3309 5292 2.145536 CACAAATTTTGCTCCTTGGCC 58.854 47.619 9.04 0.00 0.00 5.36
3311 5294 5.782047 TCATACACAAATTTTGCTCCTTGG 58.218 37.500 9.04 0.00 0.00 3.61
3312 5295 6.128742 GCTTCATACACAAATTTTGCTCCTTG 60.129 38.462 9.04 2.58 0.00 3.61
3313 5296 5.928264 GCTTCATACACAAATTTTGCTCCTT 59.072 36.000 9.04 0.00 0.00 3.36
3314 5297 5.473039 GCTTCATACACAAATTTTGCTCCT 58.527 37.500 9.04 0.00 0.00 3.69
3315 5298 4.324402 CGCTTCATACACAAATTTTGCTCC 59.676 41.667 9.04 0.00 0.00 4.70
3316 5299 4.324402 CCGCTTCATACACAAATTTTGCTC 59.676 41.667 9.04 0.00 0.00 4.26
3317 5300 4.236935 CCGCTTCATACACAAATTTTGCT 58.763 39.130 9.04 0.00 0.00 3.91
3319 5302 3.367630 GGCCGCTTCATACACAAATTTTG 59.632 43.478 7.59 7.59 0.00 2.44
3320 5303 3.584834 GGCCGCTTCATACACAAATTTT 58.415 40.909 0.00 0.00 0.00 1.82
3321 5304 2.415357 CGGCCGCTTCATACACAAATTT 60.415 45.455 14.67 0.00 0.00 1.82
3323 5306 0.732571 CGGCCGCTTCATACACAAAT 59.267 50.000 14.67 0.00 0.00 2.32
3336 5373 2.212900 AATTTTGCTCCTTCGGCCGC 62.213 55.000 23.51 5.52 0.00 6.53
3338 5375 1.672737 CCAAATTTTGCTCCTTCGGCC 60.673 52.381 3.50 0.00 0.00 6.13
3360 5397 1.460689 AGGTTTCCGTCCTGTCCCA 60.461 57.895 0.00 0.00 33.62 4.37
3361 5398 1.003718 CAGGTTTCCGTCCTGTCCC 60.004 63.158 4.06 0.00 45.09 4.46
3371 5408 4.142271 TGAACAACACAACATCAGGTTTCC 60.142 41.667 0.00 0.00 37.72 3.13
3387 5424 2.521105 ACGGTGAGTAGGTGAACAAC 57.479 50.000 0.00 0.00 0.00 3.32
3388 5425 3.928727 CTACGGTGAGTAGGTGAACAA 57.071 47.619 0.00 0.00 46.93 2.83
3397 5434 1.167851 CCGACAACCTACGGTGAGTA 58.832 55.000 0.00 0.00 43.53 2.59
3398 5435 1.530013 CCCGACAACCTACGGTGAGT 61.530 60.000 0.00 0.00 46.53 3.41
3410 5455 3.316029 CACGGTATATCTACACCCGACAA 59.684 47.826 3.10 0.00 41.08 3.18
3414 5459 1.884579 AGCACGGTATATCTACACCCG 59.115 52.381 0.00 0.00 44.06 5.28
3421 5466 5.847111 TCAAGTTACAGCACGGTATATCT 57.153 39.130 0.00 0.00 0.00 1.98
3427 5472 2.143122 CACATCAAGTTACAGCACGGT 58.857 47.619 0.00 0.00 0.00 4.83
3438 5483 2.105477 AGCAAGAGACACCACATCAAGT 59.895 45.455 0.00 0.00 0.00 3.16
3447 5492 3.660621 GCCACAGCAAGAGACACC 58.339 61.111 0.00 0.00 39.53 4.16
3464 5509 4.111916 GTGATCCGCCACCATTTTTATTG 58.888 43.478 0.00 0.00 0.00 1.90
3465 5510 4.023291 AGTGATCCGCCACCATTTTTATT 58.977 39.130 0.00 0.00 37.76 1.40
3467 5512 2.752354 CAGTGATCCGCCACCATTTTTA 59.248 45.455 0.00 0.00 37.76 1.52
3468 5513 1.545582 CAGTGATCCGCCACCATTTTT 59.454 47.619 0.00 0.00 37.76 1.94
3471 5516 0.548031 ATCAGTGATCCGCCACCATT 59.452 50.000 0.00 0.00 37.76 3.16
3473 5518 0.752658 CTATCAGTGATCCGCCACCA 59.247 55.000 9.42 0.00 37.76 4.17
3474 5519 1.040646 TCTATCAGTGATCCGCCACC 58.959 55.000 9.42 0.00 37.76 4.61
3476 5521 2.560105 CTCATCTATCAGTGATCCGCCA 59.440 50.000 9.42 0.00 0.00 5.69
3477 5522 2.560542 ACTCATCTATCAGTGATCCGCC 59.439 50.000 9.42 0.00 0.00 6.13
3478 5523 3.932545 ACTCATCTATCAGTGATCCGC 57.067 47.619 9.42 0.00 0.00 5.54
3479 5524 8.138074 TCTTTTTACTCATCTATCAGTGATCCG 58.862 37.037 9.42 2.41 0.00 4.18
3480 5525 9.255304 GTCTTTTTACTCATCTATCAGTGATCC 57.745 37.037 9.42 0.00 0.00 3.36
3482 5527 9.593134 GTGTCTTTTTACTCATCTATCAGTGAT 57.407 33.333 11.12 11.12 0.00 3.06
3483 5528 8.807118 AGTGTCTTTTTACTCATCTATCAGTGA 58.193 33.333 0.00 0.00 0.00 3.41
3484 5529 8.994429 AGTGTCTTTTTACTCATCTATCAGTG 57.006 34.615 0.00 0.00 0.00 3.66
3486 5531 9.522804 GGTAGTGTCTTTTTACTCATCTATCAG 57.477 37.037 0.00 0.00 0.00 2.90
3491 5536 9.628500 AAAAAGGTAGTGTCTTTTTACTCATCT 57.372 29.630 11.35 0.00 46.34 2.90
3528 5573 3.559384 GCCTGGCTAGGTAGTGTCTTTTT 60.559 47.826 18.47 0.00 46.41 1.94
3529 5574 2.027100 GCCTGGCTAGGTAGTGTCTTTT 60.027 50.000 18.47 0.00 46.41 2.27
3530 5575 1.555533 GCCTGGCTAGGTAGTGTCTTT 59.444 52.381 18.47 0.00 46.41 2.52
3531 5576 1.196012 GCCTGGCTAGGTAGTGTCTT 58.804 55.000 18.47 0.00 46.41 3.01
3532 5577 1.038130 CGCCTGGCTAGGTAGTGTCT 61.038 60.000 18.47 0.00 46.41 3.41
3533 5578 1.437986 CGCCTGGCTAGGTAGTGTC 59.562 63.158 18.47 0.00 46.41 3.67
3534 5579 2.722201 GCGCCTGGCTAGGTAGTGT 61.722 63.158 18.47 0.00 46.41 3.55
3535 5580 2.107141 GCGCCTGGCTAGGTAGTG 59.893 66.667 18.47 6.70 46.41 2.74
3536 5581 1.961180 CTTGCGCCTGGCTAGGTAGT 61.961 60.000 18.47 0.00 46.41 2.73
3537 5582 1.227380 CTTGCGCCTGGCTAGGTAG 60.227 63.158 18.47 13.10 46.41 3.18
3538 5583 1.550130 AACTTGCGCCTGGCTAGGTA 61.550 55.000 18.47 1.81 42.76 3.08
3539 5584 2.895424 AACTTGCGCCTGGCTAGGT 61.895 57.895 18.47 9.28 46.89 3.08
3540 5585 2.045926 AACTTGCGCCTGGCTAGG 60.046 61.111 17.92 12.68 46.89 3.02
3578 5626 9.163899 GATGAGCATGAATTATACATCACTGAT 57.836 33.333 0.00 0.00 0.00 2.90
3594 5642 9.788889 ACTTCATAATAATCTTGATGAGCATGA 57.211 29.630 0.00 0.00 35.44 3.07
3597 5645 9.494271 GGTACTTCATAATAATCTTGATGAGCA 57.506 33.333 0.00 0.00 30.37 4.26
3598 5646 8.651588 CGGTACTTCATAATAATCTTGATGAGC 58.348 37.037 0.00 0.00 30.37 4.26
3600 5648 8.147704 TGCGGTACTTCATAATAATCTTGATGA 58.852 33.333 0.00 0.00 0.00 2.92
3611 5671 3.141398 CCAGCATGCGGTACTTCATAAT 58.859 45.455 16.76 0.00 31.97 1.28
3627 5687 0.320858 TACGATGAAAACCGCCAGCA 60.321 50.000 0.00 0.00 0.00 4.41
3631 5691 3.001939 CCTATGTTACGATGAAAACCGCC 59.998 47.826 0.00 0.00 0.00 6.13
3639 5699 4.581409 TGATCGAACCCTATGTTACGATGA 59.419 41.667 0.00 0.00 42.15 2.92
3640 5700 4.866921 TGATCGAACCCTATGTTACGATG 58.133 43.478 0.00 0.00 42.15 3.84
3675 5735 4.063998 AGATCGTCTGATAAGCATGCAA 57.936 40.909 21.98 7.96 34.09 4.08
3677 5737 4.032672 GCATAGATCGTCTGATAAGCATGC 59.967 45.833 10.51 10.51 34.09 4.06
3682 5742 6.493449 TCTCAGCATAGATCGTCTGATAAG 57.507 41.667 8.80 0.00 35.34 1.73
3683 5743 6.712547 TCTTCTCAGCATAGATCGTCTGATAA 59.287 38.462 8.80 7.79 35.34 1.75
3687 5747 4.827304 TCTTCTCAGCATAGATCGTCTG 57.173 45.455 0.00 0.00 0.00 3.51
3697 5757 4.333690 AGCATTCTGTTTCTTCTCAGCAT 58.666 39.130 0.00 0.00 0.00 3.79
3700 5760 5.686159 ACAAGCATTCTGTTTCTTCTCAG 57.314 39.130 0.00 0.00 0.00 3.35
3713 5773 2.415512 GGGTCACTCGTTACAAGCATTC 59.584 50.000 0.00 0.00 0.00 2.67
3725 5785 2.526304 TTTGAGACAAGGGTCACTCG 57.474 50.000 0.00 0.00 46.80 4.18
3726 5786 3.999663 CTCATTTGAGACAAGGGTCACTC 59.000 47.826 1.15 0.00 46.80 3.51
3727 5787 3.392616 ACTCATTTGAGACAAGGGTCACT 59.607 43.478 14.29 0.00 46.80 3.41
3728 5788 3.744660 ACTCATTTGAGACAAGGGTCAC 58.255 45.455 14.29 0.00 46.80 3.67
3729 5789 4.437682 AACTCATTTGAGACAAGGGTCA 57.562 40.909 14.29 0.00 46.80 4.02
3730 5790 6.486993 AGTTAAACTCATTTGAGACAAGGGTC 59.513 38.462 14.29 0.00 44.74 4.46
3731 5791 6.365520 AGTTAAACTCATTTGAGACAAGGGT 58.634 36.000 14.29 0.00 44.74 4.34
3732 5792 6.884280 AGTTAAACTCATTTGAGACAAGGG 57.116 37.500 14.29 0.00 44.74 3.95
3752 5812 9.649167 ACAGTGCGTATACTTTTCTAATTAGTT 57.351 29.630 12.19 0.00 0.00 2.24
3753 5813 9.298774 GACAGTGCGTATACTTTTCTAATTAGT 57.701 33.333 12.19 0.00 0.00 2.24
3754 5814 8.753175 GGACAGTGCGTATACTTTTCTAATTAG 58.247 37.037 6.11 6.11 0.00 1.73
3755 5815 7.707893 GGGACAGTGCGTATACTTTTCTAATTA 59.292 37.037 0.56 0.00 0.00 1.40
3756 5816 6.537660 GGGACAGTGCGTATACTTTTCTAATT 59.462 38.462 0.56 0.00 0.00 1.40
3757 5817 6.047231 GGGACAGTGCGTATACTTTTCTAAT 58.953 40.000 0.56 0.00 0.00 1.73
3758 5818 5.047164 TGGGACAGTGCGTATACTTTTCTAA 60.047 40.000 0.56 0.00 0.00 2.10
3759 5819 4.463539 TGGGACAGTGCGTATACTTTTCTA 59.536 41.667 0.56 0.00 0.00 2.10
3760 5820 3.259876 TGGGACAGTGCGTATACTTTTCT 59.740 43.478 0.56 0.00 0.00 2.52
3761 5821 3.370061 GTGGGACAGTGCGTATACTTTTC 59.630 47.826 0.56 0.00 41.80 2.29
3762 5822 3.244284 TGTGGGACAGTGCGTATACTTTT 60.244 43.478 0.56 0.00 41.80 2.27
3763 5823 2.300723 TGTGGGACAGTGCGTATACTTT 59.699 45.455 0.56 0.00 41.80 2.66
3764 5824 1.897133 TGTGGGACAGTGCGTATACTT 59.103 47.619 0.56 0.00 41.80 2.24
3765 5825 1.552578 TGTGGGACAGTGCGTATACT 58.447 50.000 0.56 0.00 41.80 2.12
3766 5826 2.094390 TCTTGTGGGACAGTGCGTATAC 60.094 50.000 0.00 0.00 41.80 1.47
3767 5827 2.172679 TCTTGTGGGACAGTGCGTATA 58.827 47.619 0.00 0.00 41.80 1.47
3768 5828 0.973632 TCTTGTGGGACAGTGCGTAT 59.026 50.000 0.00 0.00 41.80 3.06
3769 5829 0.973632 ATCTTGTGGGACAGTGCGTA 59.026 50.000 0.00 0.00 41.80 4.42
3770 5830 0.108585 AATCTTGTGGGACAGTGCGT 59.891 50.000 0.00 0.00 41.80 5.24
3771 5831 1.238439 AAATCTTGTGGGACAGTGCG 58.762 50.000 0.00 0.00 41.80 5.34
3772 5832 3.733443 AAAAATCTTGTGGGACAGTGC 57.267 42.857 0.00 0.00 41.80 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.