Multiple sequence alignment - TraesCS5D01G453600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G453600 chr5D 100.000 5192 0 0 1 5192 501027743 501032934 0.000000e+00 9588.0
1 TraesCS5D01G453600 chr5D 88.770 187 20 1 3974 4160 490466615 490466430 1.450000e-55 228.0
2 TraesCS5D01G453600 chr5D 91.667 108 6 1 1936 2040 260495607 260495714 4.190000e-31 147.0
3 TraesCS5D01G453600 chr5D 92.857 42 2 1 304 344 297053752 297053711 5.610000e-05 60.2
4 TraesCS5D01G453600 chr5A 89.558 1992 103 42 1813 3779 626278303 626276392 0.000000e+00 2429.0
5 TraesCS5D01G453600 chr5A 93.859 1433 58 11 3776 5192 626276363 626274945 0.000000e+00 2132.0
6 TraesCS5D01G453600 chr5A 83.758 825 71 35 620 1417 626279253 626278465 0.000000e+00 723.0
7 TraesCS5D01G453600 chr5A 82.796 279 44 4 3991 4268 612155493 612155218 4.020000e-61 246.0
8 TraesCS5D01G453600 chr5A 88.889 108 9 1 1936 2040 345242164 345242271 4.220000e-26 130.0
9 TraesCS5D01G453600 chr5A 95.000 40 1 1 306 344 87894280 87894319 1.560000e-05 62.1
10 TraesCS5D01G453600 chr5B 95.405 1110 48 2 3421 4529 622551179 622552286 0.000000e+00 1764.0
11 TraesCS5D01G453600 chr5B 94.977 1095 49 4 2219 3309 622549862 622550954 0.000000e+00 1712.0
12 TraesCS5D01G453600 chr5B 88.372 946 69 16 737 1656 622548454 622549384 0.000000e+00 1099.0
13 TraesCS5D01G453600 chr5B 90.503 537 22 14 1655 2181 622549351 622549868 0.000000e+00 682.0
14 TraesCS5D01G453600 chr5B 83.066 561 55 18 1 523 622544086 622544644 1.690000e-129 473.0
15 TraesCS5D01G453600 chr5B 84.158 303 37 7 3964 4265 604881971 604881679 3.060000e-72 283.0
16 TraesCS5D01G453600 chr5B 89.655 116 10 1 626 739 622547193 622547308 4.190000e-31 147.0
17 TraesCS5D01G453600 chr5B 89.815 108 8 1 1936 2040 293951246 293951139 9.070000e-28 135.0
18 TraesCS5D01G453600 chr4A 82.258 310 43 9 3968 4268 581515706 581515400 1.860000e-64 257.0
19 TraesCS5D01G453600 chr6D 83.251 203 31 3 4041 4242 420258644 420258444 3.190000e-42 183.0
20 TraesCS5D01G453600 chr7D 77.447 235 40 6 4608 4836 98408463 98408690 1.520000e-25 128.0
21 TraesCS5D01G453600 chr7D 75.170 294 52 14 2839 3117 562816579 562816292 9.130000e-23 119.0
22 TraesCS5D01G453600 chr7B 75.517 290 52 13 2839 3114 612545732 612545448 1.960000e-24 124.0
23 TraesCS5D01G453600 chr7B 79.641 167 27 5 4678 4841 53253274 53253436 4.250000e-21 113.0
24 TraesCS5D01G453600 chr7B 93.478 46 3 0 252 297 47615055 47615010 9.330000e-08 69.4
25 TraesCS5D01G453600 chr7A 75.170 294 52 15 2839 3117 648427471 648427184 9.130000e-23 119.0
26 TraesCS5D01G453600 chr7A 78.613 173 29 6 4673 4841 100713069 100713237 1.980000e-19 108.0
27 TraesCS5D01G453600 chr4B 90.476 42 3 1 304 344 340683021 340682980 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G453600 chr5D 501027743 501032934 5191 False 9588.000000 9588 100.000000 1 5192 1 chr5D.!!$F2 5191
1 TraesCS5D01G453600 chr5A 626274945 626279253 4308 True 1761.333333 2429 89.058333 620 5192 3 chr5A.!!$R2 4572
2 TraesCS5D01G453600 chr5B 622544086 622552286 8200 False 979.500000 1764 90.329667 1 4529 6 chr5B.!!$F1 4528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 457 0.038166 TTGGGCTGGGCTTTAGACAG 59.962 55.000 0.00 0.00 35.40 3.51 F
529 566 0.328258 ATGTACCACTGCTGTTCCCC 59.672 55.000 0.00 0.00 0.00 4.81 F
768 4401 0.379669 CAGCTTCAATCATGGCGGAC 59.620 55.000 0.00 0.00 0.00 4.79 F
1451 5119 0.543749 AGGTCTAACTGATGGCCAGC 59.456 55.000 15.83 15.83 46.81 4.85 F
1741 5419 0.455005 GCATTCTTCAGGCTTCAGGC 59.545 55.000 0.00 0.00 41.43 4.85 F
2033 5715 0.897621 CCATCCCACCTTGCCTTTTC 59.102 55.000 0.00 0.00 0.00 2.29 F
3371 7078 2.024414 GGTTGGTCACCTCATAATGCC 58.976 52.381 0.00 0.00 43.29 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 5316 0.103572 ACAAAAACAGCAGCAGCAGG 59.896 50.000 3.17 0.0 45.49 4.85 R
1650 5318 1.747924 TGTACAAAAACAGCAGCAGCA 59.252 42.857 3.17 0.0 45.49 4.41 R
1651 5319 2.490328 TGTACAAAAACAGCAGCAGC 57.510 45.000 0.00 0.0 42.56 5.25 R
2848 6551 0.250901 AGCGGCAACACTCAATCCTT 60.251 50.000 1.45 0.0 0.00 3.36 R
3481 7345 3.064207 GACAAGCACATTAAGTCGGACA 58.936 45.455 11.27 0.0 0.00 4.02 R
3920 7818 2.629137 TCCTGCAACATCAGCAAACAAT 59.371 40.909 0.00 0.0 42.17 2.71 R
4297 8207 0.036952 AGGACGAGCCATTGTGTCAG 60.037 55.000 0.00 0.0 40.02 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 55 6.549912 AGAAATTTTAGCGACTTAACCGTT 57.450 33.333 0.00 0.00 0.00 4.44
53 56 6.368213 AGAAATTTTAGCGACTTAACCGTTG 58.632 36.000 0.00 0.00 0.00 4.10
63 66 1.393539 CTTAACCGTTGCATCGAGGTG 59.606 52.381 18.44 4.35 37.03 4.00
117 120 9.345517 TCAAGCATCGAAAATAAGAAAAATGAG 57.654 29.630 0.00 0.00 0.00 2.90
129 132 9.450807 AATAAGAAAAATGAGACGTTTGTTCAG 57.549 29.630 4.00 0.00 0.00 3.02
133 136 6.920569 AAAATGAGACGTTTGTTCAGTAGT 57.079 33.333 0.00 0.00 0.00 2.73
138 141 4.945246 AGACGTTTGTTCAGTAGTGATGT 58.055 39.130 0.00 0.00 30.85 3.06
147 150 6.420638 TGTTCAGTAGTGATGTACCTAGCTA 58.579 40.000 0.00 0.00 30.85 3.32
150 153 4.216687 CAGTAGTGATGTACCTAGCTAGCC 59.783 50.000 15.74 5.86 0.00 3.93
156 159 2.136863 TGTACCTAGCTAGCCTCTCCT 58.863 52.381 15.74 0.00 0.00 3.69
161 164 2.393646 CTAGCTAGCCTCTCCTTTGGT 58.606 52.381 12.13 0.00 0.00 3.67
169 172 3.100671 GCCTCTCCTTTGGTTCTCTCTA 58.899 50.000 0.00 0.00 0.00 2.43
172 175 5.729510 CCTCTCCTTTGGTTCTCTCTAAAG 58.270 45.833 0.00 0.00 0.00 1.85
173 176 5.337975 CCTCTCCTTTGGTTCTCTCTAAAGG 60.338 48.000 12.97 12.97 46.62 3.11
190 193 8.734763 TCTCTAAAGGTGATAATACCCTAGACT 58.265 37.037 0.00 0.00 41.83 3.24
216 219 0.608130 GGTTTTGGGCCAGGCTTAAG 59.392 55.000 12.43 0.00 0.00 1.85
217 220 1.627864 GTTTTGGGCCAGGCTTAAGA 58.372 50.000 12.43 0.00 0.00 2.10
220 223 1.923356 TTGGGCCAGGCTTAAGAAAG 58.077 50.000 12.43 0.00 35.68 2.62
238 242 1.299541 AGCGCATAGTGAAAATCCCG 58.700 50.000 11.47 0.00 0.00 5.14
242 246 2.741878 CGCATAGTGAAAATCCCGACCT 60.742 50.000 0.00 0.00 0.00 3.85
244 248 3.065371 GCATAGTGAAAATCCCGACCTTG 59.935 47.826 0.00 0.00 0.00 3.61
247 251 0.610785 TGAAAATCCCGACCTTGGCC 60.611 55.000 0.00 0.00 0.00 5.36
250 254 1.874299 AAATCCCGACCTTGGCCCAT 61.874 55.000 0.00 0.00 0.00 4.00
276 280 2.327568 CCCGAAACACATGAACAATGC 58.672 47.619 0.00 0.00 40.22 3.56
277 281 2.327568 CCGAAACACATGAACAATGCC 58.672 47.619 0.00 0.00 40.22 4.40
287 291 4.751098 ACATGAACAATGCCATTTGTCAAC 59.249 37.500 0.00 0.00 38.85 3.18
334 359 5.534654 CCCATCCATATTAATTGACGTTGGT 59.465 40.000 0.00 0.00 0.00 3.67
345 370 6.930667 AATTGACGTTGGTTTAGTACAACT 57.069 33.333 0.00 0.00 43.52 3.16
355 380 6.765403 TGGTTTAGTACAACTAGCATCAAGT 58.235 36.000 0.00 0.00 31.47 3.16
358 395 7.603024 GGTTTAGTACAACTAGCATCAAGTTCT 59.397 37.037 0.00 0.00 34.99 3.01
414 451 2.519622 GGCTTTTGGGCTGGGCTTT 61.520 57.895 0.00 0.00 37.53 3.51
415 452 1.191489 GGCTTTTGGGCTGGGCTTTA 61.191 55.000 0.00 0.00 37.53 1.85
416 453 0.247460 GCTTTTGGGCTGGGCTTTAG 59.753 55.000 0.00 0.00 0.00 1.85
417 454 1.923356 CTTTTGGGCTGGGCTTTAGA 58.077 50.000 0.00 0.00 0.00 2.10
418 455 1.546029 CTTTTGGGCTGGGCTTTAGAC 59.454 52.381 0.00 0.00 0.00 2.59
420 457 0.038166 TTGGGCTGGGCTTTAGACAG 59.962 55.000 0.00 0.00 35.40 3.51
433 470 4.320567 GCTTTAGACAGAAAAGTCAAGCCC 60.321 45.833 7.52 0.00 39.61 5.19
434 471 4.431416 TTAGACAGAAAAGTCAAGCCCA 57.569 40.909 0.00 0.00 40.98 5.36
464 501 4.360405 ATGGCGGCCTTTCGGGTT 62.360 61.111 21.46 0.00 37.43 4.11
504 541 2.092323 GCCCATGACCAGGTTTAGTTC 58.908 52.381 0.00 0.00 0.00 3.01
523 560 3.057969 TCCTTTCATGTACCACTGCTG 57.942 47.619 0.00 0.00 0.00 4.41
525 562 3.149196 CCTTTCATGTACCACTGCTGTT 58.851 45.455 0.00 0.00 0.00 3.16
526 563 3.189287 CCTTTCATGTACCACTGCTGTTC 59.811 47.826 0.00 0.00 0.00 3.18
529 566 0.328258 ATGTACCACTGCTGTTCCCC 59.672 55.000 0.00 0.00 0.00 4.81
530 567 0.766674 TGTACCACTGCTGTTCCCCT 60.767 55.000 0.00 0.00 0.00 4.79
531 568 1.272807 GTACCACTGCTGTTCCCCTA 58.727 55.000 0.00 0.00 0.00 3.53
532 569 1.626825 GTACCACTGCTGTTCCCCTAA 59.373 52.381 0.00 0.00 0.00 2.69
533 570 1.145571 ACCACTGCTGTTCCCCTAAA 58.854 50.000 0.00 0.00 0.00 1.85
534 571 1.497286 ACCACTGCTGTTCCCCTAAAA 59.503 47.619 0.00 0.00 0.00 1.52
535 572 2.091555 ACCACTGCTGTTCCCCTAAAAA 60.092 45.455 0.00 0.00 0.00 1.94
558 595 3.780804 AATGTACCACTGCTGTAACCA 57.219 42.857 0.00 0.00 0.00 3.67
576 613 3.940209 CCAGCTGGTAATGCTCAAAAA 57.060 42.857 25.53 0.00 38.92 1.94
600 2170 2.774439 AAAACGCTGGTGTCAATCAC 57.226 45.000 0.00 0.00 45.47 3.06
636 3119 1.674359 AACTGGTGTCAATCGCAACA 58.326 45.000 0.00 0.00 32.10 3.33
653 3136 0.459899 ACAGCACGAATCCGCATCTA 59.540 50.000 0.00 0.00 39.95 1.98
668 3151 1.118838 ATCTAGGTGCTCACTCCAGC 58.881 55.000 0.00 0.00 40.13 4.85
681 3164 4.069232 CCAGCCTCCAACGCGAGA 62.069 66.667 15.93 5.50 30.97 4.04
756 4389 1.617536 AGGAGGGATGCCAGCTTCA 60.618 57.895 5.86 0.00 0.00 3.02
761 4394 1.217183 AGGGATGCCAGCTTCAATCAT 59.783 47.619 5.86 0.00 0.00 2.45
768 4401 0.379669 CAGCTTCAATCATGGCGGAC 59.620 55.000 0.00 0.00 0.00 4.79
821 4454 1.768684 GCCGGCCTGAGAATATCCCA 61.769 60.000 18.11 0.00 0.00 4.37
823 4456 1.051812 CGGCCTGAGAATATCCCAGT 58.948 55.000 0.00 0.00 0.00 4.00
833 4467 2.568546 ATATCCCAGTGTCTGTCCCA 57.431 50.000 0.00 0.00 0.00 4.37
837 4471 0.987294 CCCAGTGTCTGTCCCAAGAT 59.013 55.000 0.00 0.00 0.00 2.40
874 4508 4.509737 GCACTCTCCGCCCGTACC 62.510 72.222 0.00 0.00 0.00 3.34
875 4509 3.066190 CACTCTCCGCCCGTACCA 61.066 66.667 0.00 0.00 0.00 3.25
876 4510 2.754658 ACTCTCCGCCCGTACCAG 60.755 66.667 0.00 0.00 0.00 4.00
877 4511 2.439701 CTCTCCGCCCGTACCAGA 60.440 66.667 0.00 0.00 0.00 3.86
878 4512 2.753043 TCTCCGCCCGTACCAGAC 60.753 66.667 0.00 0.00 0.00 3.51
879 4513 2.754658 CTCCGCCCGTACCAGACT 60.755 66.667 0.00 0.00 0.00 3.24
880 4514 2.753043 TCCGCCCGTACCAGACTC 60.753 66.667 0.00 0.00 0.00 3.36
887 4526 0.818296 CCGTACCAGACTCCTCCAAG 59.182 60.000 0.00 0.00 0.00 3.61
895 4534 4.785453 CTCCTCCAAGGCGCACCC 62.785 72.222 10.83 0.00 34.61 4.61
926 4571 4.871557 ACGACAAAGTTAACACTACAAGCA 59.128 37.500 8.61 0.00 30.68 3.91
973 4618 2.892334 GCGCGTGCTGGAGTCAAAA 61.892 57.895 15.02 0.00 38.39 2.44
998 4643 1.900498 GCAGCTGTTGGTTGGCTCT 60.900 57.895 16.64 0.00 33.74 4.09
1067 4712 3.192230 CTGCGCGGCGTGGATAAA 61.192 61.111 24.46 0.65 0.00 1.40
1249 4917 2.107292 CCTGCTGCTGCTACTGCTG 61.107 63.158 17.00 4.62 40.48 4.41
1269 4937 1.583495 CTACGGCCGTGTCTCTGACA 61.583 60.000 40.02 16.37 40.50 3.58
1280 4948 2.067013 GTCTCTGACAGCGGGTTTAAC 58.933 52.381 0.00 0.00 32.09 2.01
1283 4951 1.274167 TCTGACAGCGGGTTTAACGAT 59.726 47.619 0.00 0.00 0.00 3.73
1426 5094 3.450028 GCTCGTGGCATCTCTTTCT 57.550 52.632 0.00 0.00 41.35 2.52
1447 5115 3.887621 TGTACAGGTCTAACTGATGGC 57.112 47.619 1.15 0.00 40.97 4.40
1448 5116 2.500098 TGTACAGGTCTAACTGATGGCC 59.500 50.000 1.15 0.00 40.97 5.36
1449 5117 1.656587 ACAGGTCTAACTGATGGCCA 58.343 50.000 8.56 8.56 40.97 5.36
1451 5119 0.543749 AGGTCTAACTGATGGCCAGC 59.456 55.000 15.83 15.83 46.81 4.85
1452 5120 0.543749 GGTCTAACTGATGGCCAGCT 59.456 55.000 23.69 4.23 46.81 4.24
1496 5164 9.034544 TCAGAGCTTTTTATTTTCTTTTCTTGC 57.965 29.630 0.00 0.00 0.00 4.01
1497 5165 9.038803 CAGAGCTTTTTATTTTCTTTTCTTGCT 57.961 29.630 0.00 0.00 0.00 3.91
1539 5207 8.411683 AGAAATTGCTGAAATAAGCTTCCTATG 58.588 33.333 0.00 0.00 43.90 2.23
1541 5209 7.651027 ATTGCTGAAATAAGCTTCCTATGTT 57.349 32.000 0.00 0.00 43.90 2.71
1555 5223 8.774586 AGCTTCCTATGTTTATTTACTATTGCG 58.225 33.333 0.00 0.00 0.00 4.85
1556 5224 7.534239 GCTTCCTATGTTTATTTACTATTGCGC 59.466 37.037 0.00 0.00 0.00 6.09
1573 5241 2.162608 TGCGCCGCAAGTAAATTTACAT 59.837 40.909 26.06 14.63 34.76 2.29
1574 5242 2.781646 GCGCCGCAAGTAAATTTACATC 59.218 45.455 26.06 14.81 36.12 3.06
1575 5243 3.729462 GCGCCGCAAGTAAATTTACATCA 60.729 43.478 26.06 0.00 36.12 3.07
1579 5247 6.208644 GCCGCAAGTAAATTTACATCATCAT 58.791 36.000 26.06 4.90 36.12 2.45
1614 5282 9.553064 GATCCATTTCAAATGTACACTATCTCT 57.447 33.333 9.31 0.00 0.00 3.10
1623 5291 9.636879 CAAATGTACACTATCTCTATCATCTGG 57.363 37.037 0.00 0.00 0.00 3.86
1624 5292 6.825944 TGTACACTATCTCTATCATCTGGC 57.174 41.667 0.00 0.00 0.00 4.85
1625 5293 6.306987 TGTACACTATCTCTATCATCTGGCA 58.693 40.000 0.00 0.00 0.00 4.92
1626 5294 6.777580 TGTACACTATCTCTATCATCTGGCAA 59.222 38.462 0.00 0.00 0.00 4.52
1627 5295 6.095432 ACACTATCTCTATCATCTGGCAAC 57.905 41.667 0.00 0.00 0.00 4.17
1628 5296 5.837979 ACACTATCTCTATCATCTGGCAACT 59.162 40.000 0.00 0.00 37.61 3.16
1629 5297 6.157904 CACTATCTCTATCATCTGGCAACTG 58.842 44.000 0.00 0.00 37.61 3.16
1630 5298 5.837979 ACTATCTCTATCATCTGGCAACTGT 59.162 40.000 0.00 0.00 36.78 3.55
1631 5299 5.627182 ATCTCTATCATCTGGCAACTGTT 57.373 39.130 0.00 0.00 36.78 3.16
1632 5300 5.016051 TCTCTATCATCTGGCAACTGTTC 57.984 43.478 0.00 0.00 36.78 3.18
1633 5301 4.713814 TCTCTATCATCTGGCAACTGTTCT 59.286 41.667 0.00 0.00 36.78 3.01
1634 5302 5.188555 TCTCTATCATCTGGCAACTGTTCTT 59.811 40.000 0.00 0.00 36.78 2.52
1635 5303 5.181009 TCTATCATCTGGCAACTGTTCTTG 58.819 41.667 0.00 0.00 36.78 3.02
1636 5304 3.213206 TCATCTGGCAACTGTTCTTGT 57.787 42.857 0.00 0.00 36.78 3.16
1637 5305 4.350368 TCATCTGGCAACTGTTCTTGTA 57.650 40.909 0.00 0.00 36.78 2.41
1638 5306 4.065088 TCATCTGGCAACTGTTCTTGTAC 58.935 43.478 0.00 0.00 36.78 2.90
1639 5307 3.552132 TCTGGCAACTGTTCTTGTACA 57.448 42.857 0.00 0.00 36.78 2.90
1640 5308 4.085357 TCTGGCAACTGTTCTTGTACAT 57.915 40.909 0.00 0.00 36.78 2.29
1641 5309 3.814842 TCTGGCAACTGTTCTTGTACATG 59.185 43.478 0.00 0.00 36.78 3.21
1642 5310 2.293122 TGGCAACTGTTCTTGTACATGC 59.707 45.455 0.00 0.27 34.72 4.06
1643 5311 2.554032 GGCAACTGTTCTTGTACATGCT 59.446 45.455 12.17 0.00 35.43 3.79
1644 5312 3.365364 GGCAACTGTTCTTGTACATGCTC 60.365 47.826 12.17 5.35 35.43 4.26
1645 5313 3.499918 GCAACTGTTCTTGTACATGCTCT 59.500 43.478 0.00 0.00 33.42 4.09
1646 5314 4.612259 GCAACTGTTCTTGTACATGCTCTG 60.612 45.833 0.00 3.03 33.42 3.35
1647 5315 4.342862 ACTGTTCTTGTACATGCTCTGT 57.657 40.909 0.00 3.60 42.13 3.41
1648 5316 4.310769 ACTGTTCTTGTACATGCTCTGTC 58.689 43.478 0.00 0.00 39.39 3.51
1649 5317 3.664107 TGTTCTTGTACATGCTCTGTCC 58.336 45.455 0.00 0.00 39.39 4.02
1650 5318 3.324846 TGTTCTTGTACATGCTCTGTCCT 59.675 43.478 0.00 0.00 39.39 3.85
1651 5319 3.599730 TCTTGTACATGCTCTGTCCTG 57.400 47.619 0.00 0.00 39.39 3.86
1652 5320 2.005451 CTTGTACATGCTCTGTCCTGC 58.995 52.381 0.00 0.00 39.39 4.85
1653 5321 1.269958 TGTACATGCTCTGTCCTGCT 58.730 50.000 0.00 0.00 39.39 4.24
1657 5325 1.078356 ATGCTCTGTCCTGCTGCTG 60.078 57.895 0.00 0.00 0.00 4.41
1692 5360 1.890489 TGCTTTGTTCTGCTGCATGAT 59.110 42.857 1.31 0.00 0.00 2.45
1693 5361 3.083293 TGCTTTGTTCTGCTGCATGATA 58.917 40.909 1.31 0.00 0.00 2.15
1696 5364 5.107133 GCTTTGTTCTGCTGCATGATAAAT 58.893 37.500 1.31 0.00 0.00 1.40
1697 5365 6.127675 TGCTTTGTTCTGCTGCATGATAAATA 60.128 34.615 1.31 0.00 0.00 1.40
1698 5366 6.921857 GCTTTGTTCTGCTGCATGATAAATAT 59.078 34.615 1.31 0.00 0.00 1.28
1741 5419 0.455005 GCATTCTTCAGGCTTCAGGC 59.545 55.000 0.00 0.00 41.43 4.85
1755 5433 3.181471 GCTTCAGGCTTCTACTGATAGCA 60.181 47.826 16.88 0.00 43.82 3.49
1766 5444 6.544928 TCTACTGATAGCAGAAATGGAACA 57.455 37.500 16.32 0.00 45.17 3.18
1767 5445 6.577103 TCTACTGATAGCAGAAATGGAACAG 58.423 40.000 16.32 0.00 44.02 3.16
1804 5482 6.811665 TCTTCCTGTACATCAACTACATTTCG 59.188 38.462 0.00 0.00 0.00 3.46
1805 5483 6.275494 TCCTGTACATCAACTACATTTCGA 57.725 37.500 0.00 0.00 0.00 3.71
1808 5486 7.491372 TCCTGTACATCAACTACATTTCGATTC 59.509 37.037 0.00 0.00 0.00 2.52
1809 5487 7.277760 CCTGTACATCAACTACATTTCGATTCA 59.722 37.037 0.00 0.00 0.00 2.57
1820 5498 4.455877 ACATTTCGATTCACCCTCTTTCAC 59.544 41.667 0.00 0.00 0.00 3.18
1840 5518 8.498054 TTTCACTCATATTCTCAAGTTCATCC 57.502 34.615 0.00 0.00 0.00 3.51
1843 5521 4.960938 TCATATTCTCAAGTTCATCCGGG 58.039 43.478 0.00 0.00 0.00 5.73
2028 5710 4.066139 AGGCCATCCCACCTTGCC 62.066 66.667 5.01 0.00 42.48 4.52
2033 5715 0.897621 CCATCCCACCTTGCCTTTTC 59.102 55.000 0.00 0.00 0.00 2.29
2081 5766 9.618890 ACAAATTATCATGTATGCTACTCTTGT 57.381 29.630 0.00 0.00 0.00 3.16
2089 5774 9.534565 TCATGTATGCTACTCTTGTTAAATCTC 57.465 33.333 0.00 0.00 0.00 2.75
2090 5775 9.539825 CATGTATGCTACTCTTGTTAAATCTCT 57.460 33.333 0.00 0.00 0.00 3.10
2190 5879 6.463360 TGACATGTTGTAATCTGCTGAACTA 58.537 36.000 0.00 0.00 0.00 2.24
2206 5895 9.941664 CTGCTGAACTATAAATTTACATTCTGG 57.058 33.333 17.30 12.04 0.00 3.86
2207 5896 9.679661 TGCTGAACTATAAATTTACATTCTGGA 57.320 29.630 17.30 14.47 0.00 3.86
2208 5897 9.937175 GCTGAACTATAAATTTACATTCTGGAC 57.063 33.333 17.30 6.72 0.00 4.02
2220 5909 4.583871 ACATTCTGGACTTTAGCTTCTGG 58.416 43.478 0.00 0.00 0.00 3.86
2224 5913 4.642429 TCTGGACTTTAGCTTCTGGAAAC 58.358 43.478 0.00 0.00 0.00 2.78
2324 6015 2.229792 CCAAGCCTCACTGTGCTTTTA 58.770 47.619 2.12 0.00 45.09 1.52
2428 6119 4.701956 AGAATGACCTTGCGTTAATTGG 57.298 40.909 0.00 0.00 0.00 3.16
2509 6212 4.392138 GCTGGGTGTGTCTTGATAGTTTAC 59.608 45.833 0.00 0.00 0.00 2.01
2617 6320 6.930731 TCTTTTTGGTAGCACATTTAATCCC 58.069 36.000 0.00 0.00 0.00 3.85
2730 6433 3.445008 AGCTCCACTCCTAAATCTGACA 58.555 45.455 0.00 0.00 0.00 3.58
2776 6479 9.421399 CTAAAATCCATGTACTTTCCCCTTTAT 57.579 33.333 0.00 0.00 0.00 1.40
2815 6518 8.243426 TGAATTGCTTATTTGACCATACTGTTC 58.757 33.333 0.00 0.00 0.00 3.18
2818 6521 5.121611 TGCTTATTTGACCATACTGTTCACG 59.878 40.000 0.00 0.00 0.00 4.35
2819 6522 5.350365 GCTTATTTGACCATACTGTTCACGA 59.650 40.000 0.00 0.00 0.00 4.35
2835 6538 6.227522 TGTTCACGATTCTTCCTGTAAATGA 58.772 36.000 0.00 0.00 0.00 2.57
2839 6542 7.751732 TCACGATTCTTCCTGTAAATGATTTG 58.248 34.615 0.00 0.00 0.00 2.32
3013 6718 7.953158 ATGATATCGTGACTATGGTTTTGAG 57.047 36.000 0.00 0.00 0.00 3.02
3092 6797 3.084786 ACTTTCAGTTAGCTTGGATGGC 58.915 45.455 0.00 0.00 0.00 4.40
3147 6853 3.188048 GCATCTCATGTAATACTGGCTGC 59.812 47.826 0.00 0.00 0.00 5.25
3272 6979 3.548214 CGTCGTTTCTCACACTTCTCAGA 60.548 47.826 0.00 0.00 0.00 3.27
3285 6992 7.046652 CACACTTCTCAGATACAATCCATCTT 58.953 38.462 0.00 0.00 30.18 2.40
3289 6996 7.768120 ACTTCTCAGATACAATCCATCTTGTTC 59.232 37.037 0.00 0.00 39.88 3.18
3321 7028 3.482156 AGATGCAGCATTAGTACCTGG 57.518 47.619 9.90 0.00 0.00 4.45
3344 7051 3.006940 GTGTGTCCAGTTGACTGAACAA 58.993 45.455 12.54 0.00 42.80 2.83
3348 7055 4.814234 GTGTCCAGTTGACTGAACAACATA 59.186 41.667 12.54 6.41 42.80 2.29
3364 7071 5.925943 AACAACATATTGGTTGGTCACCTCA 60.926 40.000 10.39 0.00 45.12 3.86
3365 7072 7.201691 AACAACATATTGGTTGGTCACCTCAT 61.202 38.462 10.39 0.00 45.12 2.90
3366 7073 7.965658 AACAACATATTGGTTGGTCACCTCATA 60.966 37.037 10.39 0.00 45.12 2.15
3371 7078 2.024414 GGTTGGTCACCTCATAATGCC 58.976 52.381 0.00 0.00 43.29 4.40
3372 7079 2.620367 GGTTGGTCACCTCATAATGCCA 60.620 50.000 0.00 0.00 43.29 4.92
3373 7080 3.290710 GTTGGTCACCTCATAATGCCAT 58.709 45.455 0.00 0.00 0.00 4.40
3374 7081 3.668141 TGGTCACCTCATAATGCCATT 57.332 42.857 0.00 0.00 0.00 3.16
3375 7082 4.787135 TGGTCACCTCATAATGCCATTA 57.213 40.909 0.00 0.00 0.00 1.90
3376 7083 5.323382 TGGTCACCTCATAATGCCATTAT 57.677 39.130 4.07 4.07 35.92 1.28
3377 7084 5.316167 TGGTCACCTCATAATGCCATTATC 58.684 41.667 6.97 0.00 33.34 1.75
3378 7085 5.163109 TGGTCACCTCATAATGCCATTATCA 60.163 40.000 6.97 0.00 33.34 2.15
3379 7086 5.413833 GGTCACCTCATAATGCCATTATCAG 59.586 44.000 6.97 4.22 33.34 2.90
3380 7087 5.413833 GTCACCTCATAATGCCATTATCAGG 59.586 44.000 21.73 21.73 45.70 3.86
3381 7088 4.157289 CACCTCATAATGCCATTATCAGGC 59.843 45.833 22.87 0.00 44.55 4.85
3403 7110 6.716628 AGGCTCTGAAACAATCATTTTACTGA 59.283 34.615 0.00 0.00 37.44 3.41
3407 7114 9.403110 CTCTGAAACAATCATTTTACTGAAAGG 57.597 33.333 0.00 0.00 36.10 3.11
3426 7290 6.483307 TGAAAGGAATCACTTATCCGCTATTG 59.517 38.462 0.00 0.00 40.78 1.90
3481 7345 5.294306 CCGCATGTCATACTACTTGTTCATT 59.706 40.000 0.00 0.00 0.00 2.57
3651 7515 3.817647 ACAGAAGATGCAAGTTTCTCACC 59.182 43.478 7.51 0.00 0.00 4.02
3785 7682 5.422214 AATAATCACCGACTGTCTTCCTT 57.578 39.130 6.21 0.00 0.00 3.36
3786 7683 3.771577 AATCACCGACTGTCTTCCTTT 57.228 42.857 6.21 0.00 0.00 3.11
3884 7782 5.242393 CACTTGGAAGAATCATCACTGGTTT 59.758 40.000 0.00 0.00 0.00 3.27
3916 7814 6.889301 AGCTTGAATGAAAGAACTGAATGA 57.111 33.333 0.00 0.00 0.00 2.57
3920 7818 7.094634 GCTTGAATGAAAGAACTGAATGACCTA 60.095 37.037 0.00 0.00 0.00 3.08
4016 7914 1.248785 TGCCGACTGGAGAGGTACAC 61.249 60.000 0.00 0.00 37.49 2.90
4039 7937 4.877823 CACATACATGTTGCTGTAGATGGT 59.122 41.667 2.30 0.00 39.39 3.55
4267 8177 4.164796 TGATCAGAGTCCATGCCTAACATT 59.835 41.667 0.00 0.00 36.64 2.71
4268 8178 3.877559 TCAGAGTCCATGCCTAACATTG 58.122 45.455 0.00 0.00 36.64 2.82
4376 8286 9.065798 TGTGTCTGAAATGATCATTGTTTTCTA 57.934 29.630 21.39 6.42 37.44 2.10
4408 8318 5.069781 ACCCTAAGCAAGCACATTTTTGTAA 59.930 36.000 0.00 0.00 0.00 2.41
4433 8343 6.061441 ACCAAGTGTTGAATTCTGTACATCA 58.939 36.000 7.05 0.00 0.00 3.07
4465 8375 3.263170 TGCCTCCTGTGCTGTAATCTTTA 59.737 43.478 0.00 0.00 0.00 1.85
4482 8392 9.994432 GTAATCTTTATGACTTCATTTCCACAG 57.006 33.333 0.00 0.00 37.76 3.66
4592 8505 1.177401 CAAAGGCCCTTCCAGCTTAC 58.823 55.000 0.00 0.00 37.29 2.34
4695 8608 7.930217 TGCCTAATATAAAGTTGAAGCATCAC 58.070 34.615 0.00 0.00 34.61 3.06
4733 8646 0.250901 CCAGGAACACAGGGACAAGG 60.251 60.000 0.00 0.00 0.00 3.61
4736 8649 1.133792 AGGAACACAGGGACAAGGTTG 60.134 52.381 0.00 0.00 0.00 3.77
4737 8650 1.409661 GGAACACAGGGACAAGGTTGT 60.410 52.381 0.00 0.00 45.65 3.32
4738 8651 1.676006 GAACACAGGGACAAGGTTGTG 59.324 52.381 0.00 2.23 42.43 3.33
4739 8652 0.623723 ACACAGGGACAAGGTTGTGT 59.376 50.000 0.00 3.48 46.62 3.72
4740 8653 1.762708 CACAGGGACAAGGTTGTGTT 58.237 50.000 0.00 0.00 42.43 3.32
4741 8654 2.099405 CACAGGGACAAGGTTGTGTTT 58.901 47.619 0.00 0.00 42.43 2.83
4742 8655 2.495669 CACAGGGACAAGGTTGTGTTTT 59.504 45.455 0.00 0.00 42.43 2.43
4743 8656 2.758423 ACAGGGACAAGGTTGTGTTTTC 59.242 45.455 0.00 0.00 42.43 2.29
4744 8657 2.757868 CAGGGACAAGGTTGTGTTTTCA 59.242 45.455 0.00 0.00 42.43 2.69
4745 8658 3.194542 CAGGGACAAGGTTGTGTTTTCAA 59.805 43.478 0.00 0.00 42.43 2.69
4746 8659 4.030216 AGGGACAAGGTTGTGTTTTCAAT 58.970 39.130 0.00 0.00 42.43 2.57
4747 8660 4.469586 AGGGACAAGGTTGTGTTTTCAATT 59.530 37.500 0.00 0.00 42.43 2.32
4748 8661 5.659079 AGGGACAAGGTTGTGTTTTCAATTA 59.341 36.000 0.00 0.00 42.43 1.40
4749 8662 6.155393 AGGGACAAGGTTGTGTTTTCAATTAA 59.845 34.615 0.00 0.00 42.43 1.40
4764 8677 7.489574 TTTCAATTAAACTGGGAAACATTGC 57.510 32.000 0.00 0.00 0.00 3.56
4788 8701 4.931082 GCTTTCGTCAGCAAGTTAAAAC 57.069 40.909 4.04 0.00 39.83 2.43
4850 8763 3.577805 ACTTAACAGCAACAGAAGGGT 57.422 42.857 0.00 0.00 0.00 4.34
4882 8795 0.187117 TGCCCATTTCCCAGACAACA 59.813 50.000 0.00 0.00 0.00 3.33
4970 8883 9.999009 CGATGAAGCAAAATAGATATGCATAAT 57.001 29.630 11.13 5.29 42.45 1.28
5050 8963 6.758806 TTTCTTAAGGTAAGTGGTTCCTCT 57.241 37.500 1.85 0.00 37.10 3.69
5054 8967 4.415224 AAGGTAAGTGGTTCCTCTAGGA 57.585 45.455 0.00 0.00 43.73 2.94
5070 8983 0.181350 AGGATCCGGCCATGAAAGAC 59.819 55.000 5.98 0.00 0.00 3.01
5108 9021 6.323482 TGATCTTTTTGTTGATCCAAACCTCA 59.677 34.615 0.00 0.00 38.53 3.86
5186 9099 0.741221 AAGGCAAAGATCGTCGAGGC 60.741 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 4.913345 GCAACGGTTAAGTCGCTAAAATTT 59.087 37.500 0.00 0.00 0.00 1.82
49 52 0.389296 TGTACCACCTCGATGCAACG 60.389 55.000 10.48 10.48 0.00 4.10
50 53 1.463444 GTTGTACCACCTCGATGCAAC 59.537 52.381 0.00 2.00 0.00 4.17
52 55 0.036765 GGTTGTACCACCTCGATGCA 60.037 55.000 8.87 0.00 38.42 3.96
53 56 0.036765 TGGTTGTACCACCTCGATGC 60.037 55.000 16.51 0.00 44.79 3.91
63 66 5.861787 GCTTTGTATTCAATGTGGTTGTACC 59.138 40.000 0.00 0.00 38.95 3.34
75 78 2.825532 GCTTGAGGGGCTTTGTATTCAA 59.174 45.455 0.00 0.00 0.00 2.69
79 82 2.659428 GATGCTTGAGGGGCTTTGTAT 58.341 47.619 0.00 0.00 0.00 2.29
82 85 0.677731 TCGATGCTTGAGGGGCTTTG 60.678 55.000 0.00 0.00 0.00 2.77
117 120 5.118203 GGTACATCACTACTGAACAAACGTC 59.882 44.000 0.00 0.00 0.00 4.34
127 130 4.216687 GGCTAGCTAGGTACATCACTACTG 59.783 50.000 22.10 0.00 0.00 2.74
129 132 4.400120 AGGCTAGCTAGGTACATCACTAC 58.600 47.826 22.10 0.78 0.00 2.73
133 136 3.498841 GGAGAGGCTAGCTAGGTACATCA 60.499 52.174 22.10 0.00 0.00 3.07
138 141 3.567397 CAAAGGAGAGGCTAGCTAGGTA 58.433 50.000 22.10 0.99 0.00 3.08
147 150 1.905894 GAGAGAACCAAAGGAGAGGCT 59.094 52.381 0.00 0.00 0.00 4.58
150 153 5.247337 ACCTTTAGAGAGAACCAAAGGAGAG 59.753 44.000 16.61 0.00 46.59 3.20
156 159 9.886132 GTATTATCACCTTTAGAGAGAACCAAA 57.114 33.333 0.00 0.00 0.00 3.28
161 164 9.589461 CTAGGGTATTATCACCTTTAGAGAGAA 57.411 37.037 0.00 0.00 38.73 2.87
169 172 5.607171 CCCAGTCTAGGGTATTATCACCTTT 59.393 44.000 0.00 0.00 44.24 3.11
196 199 0.834261 TTAAGCCTGGCCCAAAACCC 60.834 55.000 16.57 0.00 0.00 4.11
216 219 3.695816 GGGATTTTCACTATGCGCTTTC 58.304 45.455 9.73 0.00 0.00 2.62
217 220 2.097466 CGGGATTTTCACTATGCGCTTT 59.903 45.455 9.73 0.00 0.00 3.51
220 223 1.003866 GTCGGGATTTTCACTATGCGC 60.004 52.381 0.00 0.00 0.00 6.09
221 224 1.597663 GGTCGGGATTTTCACTATGCG 59.402 52.381 0.00 0.00 0.00 4.73
222 225 2.919228 AGGTCGGGATTTTCACTATGC 58.081 47.619 0.00 0.00 0.00 3.14
225 228 2.617021 GCCAAGGTCGGGATTTTCACTA 60.617 50.000 0.00 0.00 0.00 2.74
229 232 1.320344 GGGCCAAGGTCGGGATTTTC 61.320 60.000 4.39 0.00 0.00 2.29
238 242 4.506255 CCGGGATGGGCCAAGGTC 62.506 72.222 11.89 3.07 38.95 3.85
247 251 4.418328 TGTTTCGGGCCGGGATGG 62.418 66.667 27.98 0.00 42.50 3.51
250 254 3.642503 ATGTGTTTCGGGCCGGGA 61.643 61.111 27.98 12.78 0.00 5.14
259 263 5.236911 ACAAATGGCATTGTTCATGTGTTTC 59.763 36.000 14.47 0.00 40.52 2.78
310 334 5.534654 ACCAACGTCAATTAATATGGATGGG 59.465 40.000 4.23 0.00 0.00 4.00
311 335 6.633500 ACCAACGTCAATTAATATGGATGG 57.367 37.500 4.23 0.00 0.00 3.51
314 338 8.795842 ACTAAACCAACGTCAATTAATATGGA 57.204 30.769 4.23 0.00 0.00 3.41
315 339 9.925268 GTACTAAACCAACGTCAATTAATATGG 57.075 33.333 0.00 0.00 0.00 2.74
327 352 4.947645 TGCTAGTTGTACTAAACCAACGT 58.052 39.130 0.00 0.00 44.35 3.99
373 410 9.520515 AGCCCGAAATGAACAAAGATATATTAT 57.479 29.630 0.00 0.00 0.00 1.28
384 421 2.224161 CCCAAAAGCCCGAAATGAACAA 60.224 45.455 0.00 0.00 0.00 2.83
387 424 0.320050 GCCCAAAAGCCCGAAATGAA 59.680 50.000 0.00 0.00 0.00 2.57
414 451 4.389374 CTTGGGCTTGACTTTTCTGTCTA 58.611 43.478 0.00 0.00 37.79 2.59
415 452 3.217626 CTTGGGCTTGACTTTTCTGTCT 58.782 45.455 0.00 0.00 37.79 3.41
416 453 2.287849 GCTTGGGCTTGACTTTTCTGTC 60.288 50.000 0.00 0.00 35.18 3.51
417 454 1.683385 GCTTGGGCTTGACTTTTCTGT 59.317 47.619 0.00 0.00 35.22 3.41
418 455 1.000171 GGCTTGGGCTTGACTTTTCTG 60.000 52.381 0.00 0.00 38.73 3.02
420 457 0.318441 GGGCTTGGGCTTGACTTTTC 59.682 55.000 0.00 0.00 38.73 2.29
464 501 2.282816 CATGGCCCGACAAACCCA 60.283 61.111 0.00 0.00 0.00 4.51
489 526 4.781775 TGAAAGGAACTAAACCTGGTCA 57.218 40.909 0.00 0.00 38.49 4.02
492 529 5.414765 GGTACATGAAAGGAACTAAACCTGG 59.585 44.000 0.00 0.00 38.49 4.45
504 541 2.783135 ACAGCAGTGGTACATGAAAGG 58.217 47.619 0.00 0.00 44.52 3.11
535 572 4.890581 TGGTTACAGCAGTGGTACATTTTT 59.109 37.500 0.00 0.00 44.52 1.94
537 574 4.072131 CTGGTTACAGCAGTGGTACATTT 58.928 43.478 0.00 0.00 38.34 2.32
539 576 3.334583 CTGGTTACAGCAGTGGTACAT 57.665 47.619 0.00 0.00 38.34 2.29
540 577 2.831685 CTGGTTACAGCAGTGGTACA 57.168 50.000 0.00 0.00 38.80 2.90
556 593 3.940209 TTTTTGAGCATTACCAGCTGG 57.060 42.857 31.60 31.60 43.58 4.85
580 617 3.078594 GTGATTGACACCAGCGTTTTT 57.921 42.857 0.00 0.00 43.05 1.94
581 618 2.774439 GTGATTGACACCAGCGTTTT 57.226 45.000 0.00 0.00 43.05 2.43
591 2161 3.744238 TTCCGAGTCTTGTGATTGACA 57.256 42.857 0.00 0.00 35.81 3.58
616 2186 2.020720 TGTTGCGATTGACACCAGTTT 58.979 42.857 0.00 0.00 0.00 2.66
636 3119 0.032678 CCTAGATGCGGATTCGTGCT 59.967 55.000 0.00 0.00 38.89 4.40
653 3136 2.203907 AGGCTGGAGTGAGCACCT 60.204 61.111 0.00 0.00 41.08 4.00
681 3164 1.065926 TGATTGGCATTGTCTCTCGCT 60.066 47.619 0.00 0.00 0.00 4.93
683 3166 1.667724 GGTGATTGGCATTGTCTCTCG 59.332 52.381 0.00 0.00 0.00 4.04
756 4389 0.813184 CTGCAAAGTCCGCCATGATT 59.187 50.000 0.00 0.00 0.00 2.57
761 4394 2.669569 GCTCTGCAAAGTCCGCCA 60.670 61.111 0.00 0.00 0.00 5.69
821 4454 3.744660 GTTTCATCTTGGGACAGACACT 58.255 45.455 0.00 0.00 42.39 3.55
823 4456 2.367241 TCGTTTCATCTTGGGACAGACA 59.633 45.455 0.00 0.00 42.39 3.41
833 4467 3.270877 CGGAAGGGAATCGTTTCATCTT 58.729 45.455 8.41 10.13 33.23 2.40
837 4471 1.670674 CGACGGAAGGGAATCGTTTCA 60.671 52.381 8.41 0.00 37.25 2.69
871 4505 0.970937 CGCCTTGGAGGAGTCTGGTA 60.971 60.000 0.00 0.00 37.67 3.25
872 4506 2.286523 CGCCTTGGAGGAGTCTGGT 61.287 63.158 0.00 0.00 37.67 4.00
874 4508 2.125350 GCGCCTTGGAGGAGTCTG 60.125 66.667 0.00 0.00 37.67 3.51
875 4509 2.604686 TGCGCCTTGGAGGAGTCT 60.605 61.111 4.18 0.00 37.67 3.24
876 4510 2.435059 GTGCGCCTTGGAGGAGTC 60.435 66.667 4.18 0.00 37.67 3.36
877 4511 4.021925 GGTGCGCCTTGGAGGAGT 62.022 66.667 9.68 0.00 37.67 3.85
878 4512 4.785453 GGGTGCGCCTTGGAGGAG 62.785 72.222 17.49 0.00 37.67 3.69
909 4548 6.709018 AATTGGTGCTTGTAGTGTTAACTT 57.291 33.333 7.22 0.00 37.88 2.66
913 4552 6.148811 GCTCTTAATTGGTGCTTGTAGTGTTA 59.851 38.462 0.00 0.00 0.00 2.41
916 4555 4.455533 TGCTCTTAATTGGTGCTTGTAGTG 59.544 41.667 0.00 0.00 0.00 2.74
926 4571 2.943199 GCTCTGCCTGCTCTTAATTGGT 60.943 50.000 0.00 0.00 0.00 3.67
957 4602 0.235926 GAGTTTTGACTCCAGCACGC 59.764 55.000 0.00 0.00 0.00 5.34
961 4606 1.433534 CCGAGAGTTTTGACTCCAGC 58.566 55.000 3.11 0.00 37.46 4.85
967 4612 0.514691 CAGCTGCCGAGAGTTTTGAC 59.485 55.000 0.00 0.00 0.00 3.18
968 4613 0.106708 ACAGCTGCCGAGAGTTTTGA 59.893 50.000 15.27 0.00 0.00 2.69
970 4615 0.947244 CAACAGCTGCCGAGAGTTTT 59.053 50.000 15.27 0.00 0.00 2.43
973 4618 2.044806 AACCAACAGCTGCCGAGAGT 62.045 55.000 15.27 0.00 0.00 3.24
1009 4654 4.125695 GGTAGCCTCGTCGCCGTT 62.126 66.667 0.00 0.00 35.01 4.44
1029 4674 4.265507 ACCTTCCCGACCACCCCT 62.266 66.667 0.00 0.00 0.00 4.79
1037 4682 3.691342 CGCAGGTCACCTTCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
1242 4910 3.066190 ACGGCCGTAGCAGCAGTA 61.066 61.111 33.34 0.00 42.56 2.74
1243 4911 4.742201 CACGGCCGTAGCAGCAGT 62.742 66.667 33.70 0.61 42.56 4.40
1249 4917 2.202623 CAGAGACACGGCCGTAGC 60.203 66.667 33.70 25.01 38.76 3.58
1250 4918 1.136984 GTCAGAGACACGGCCGTAG 59.863 63.158 33.70 26.15 32.09 3.51
1269 4937 1.609555 TGCAAAATCGTTAAACCCGCT 59.390 42.857 0.00 0.00 0.00 5.52
1280 4948 0.449388 GACCCTCAGCTGCAAAATCG 59.551 55.000 9.47 0.00 0.00 3.34
1283 4951 1.148273 ACGACCCTCAGCTGCAAAA 59.852 52.632 9.47 0.00 0.00 2.44
1417 5085 7.451877 TCAGTTAGACCTGTACAAGAAAGAGAT 59.548 37.037 0.00 0.00 34.02 2.75
1426 5094 3.055385 GGCCATCAGTTAGACCTGTACAA 60.055 47.826 0.00 0.00 34.02 2.41
1447 5115 3.005684 TGAAAATGTACAAGCCAAGCTGG 59.994 43.478 0.00 0.00 39.62 4.85
1448 5116 4.241590 TGAAAATGTACAAGCCAAGCTG 57.758 40.909 0.00 0.00 39.62 4.24
1449 5117 4.523943 TGATGAAAATGTACAAGCCAAGCT 59.476 37.500 0.00 0.00 42.56 3.74
1450 5118 4.808558 TGATGAAAATGTACAAGCCAAGC 58.191 39.130 0.00 0.00 0.00 4.01
1451 5119 6.258230 TCTGATGAAAATGTACAAGCCAAG 57.742 37.500 0.00 0.00 0.00 3.61
1452 5120 5.335897 GCTCTGATGAAAATGTACAAGCCAA 60.336 40.000 0.00 0.00 0.00 4.52
1497 5165 5.008613 GCAATTTCTAAACCTGACAGTGTCA 59.991 40.000 24.09 24.09 40.50 3.58
1539 5207 3.942739 TGCGGCGCAATAGTAAATAAAC 58.057 40.909 34.58 0.00 34.76 2.01
1555 5223 5.577835 TGATGATGTAAATTTACTTGCGGC 58.422 37.500 24.81 12.78 34.77 6.53
1556 5224 7.701924 ACAATGATGATGTAAATTTACTTGCGG 59.298 33.333 24.81 10.80 34.77 5.69
1573 5241 9.904198 TTGAAATGGATCTAGTAACAATGATGA 57.096 29.630 0.00 0.00 0.00 2.92
1609 5277 5.366186 AGAACAGTTGCCAGATGATAGAGAT 59.634 40.000 0.00 0.00 0.00 2.75
1614 5282 4.910195 ACAAGAACAGTTGCCAGATGATA 58.090 39.130 0.00 0.00 0.00 2.15
1615 5283 3.759581 ACAAGAACAGTTGCCAGATGAT 58.240 40.909 0.00 0.00 0.00 2.45
1616 5284 3.213206 ACAAGAACAGTTGCCAGATGA 57.787 42.857 0.00 0.00 0.00 2.92
1617 5285 3.814842 TGTACAAGAACAGTTGCCAGATG 59.185 43.478 0.00 0.00 0.00 2.90
1618 5286 4.085357 TGTACAAGAACAGTTGCCAGAT 57.915 40.909 0.00 0.00 0.00 2.90
1619 5287 3.552132 TGTACAAGAACAGTTGCCAGA 57.448 42.857 0.00 0.00 0.00 3.86
1620 5288 3.610114 GCATGTACAAGAACAGTTGCCAG 60.610 47.826 0.00 0.00 31.94 4.85
1621 5289 2.293122 GCATGTACAAGAACAGTTGCCA 59.707 45.455 0.00 0.00 31.94 4.92
1622 5290 2.554032 AGCATGTACAAGAACAGTTGCC 59.446 45.455 0.00 0.00 36.48 4.52
1623 5291 3.499918 AGAGCATGTACAAGAACAGTTGC 59.500 43.478 0.00 2.32 36.21 4.17
1624 5292 4.512944 ACAGAGCATGTACAAGAACAGTTG 59.487 41.667 0.00 0.00 41.60 3.16
1625 5293 4.708177 ACAGAGCATGTACAAGAACAGTT 58.292 39.130 0.00 0.00 41.60 3.16
1626 5294 4.310769 GACAGAGCATGTACAAGAACAGT 58.689 43.478 0.00 0.00 44.17 3.55
1627 5295 3.681897 GGACAGAGCATGTACAAGAACAG 59.318 47.826 0.00 0.00 44.17 3.16
1628 5296 3.324846 AGGACAGAGCATGTACAAGAACA 59.675 43.478 0.00 0.00 46.28 3.18
1629 5297 3.681897 CAGGACAGAGCATGTACAAGAAC 59.318 47.826 0.00 0.00 46.28 3.01
1630 5298 3.866066 GCAGGACAGAGCATGTACAAGAA 60.866 47.826 0.00 0.00 46.28 2.52
1631 5299 2.354103 GCAGGACAGAGCATGTACAAGA 60.354 50.000 0.00 0.00 46.28 3.02
1632 5300 2.005451 GCAGGACAGAGCATGTACAAG 58.995 52.381 0.00 0.00 46.28 3.16
1633 5301 1.625315 AGCAGGACAGAGCATGTACAA 59.375 47.619 0.00 0.00 46.28 2.41
1634 5302 1.066645 CAGCAGGACAGAGCATGTACA 60.067 52.381 0.00 0.00 46.28 2.90
1635 5303 1.649664 CAGCAGGACAGAGCATGTAC 58.350 55.000 0.00 0.00 44.17 2.90
1636 5304 0.107993 GCAGCAGGACAGAGCATGTA 60.108 55.000 0.00 0.00 44.17 2.29
1638 5306 1.078356 AGCAGCAGGACAGAGCATG 60.078 57.895 0.00 0.00 0.00 4.06
1639 5307 1.078356 CAGCAGCAGGACAGAGCAT 60.078 57.895 0.00 0.00 0.00 3.79
1640 5308 2.346365 CAGCAGCAGGACAGAGCA 59.654 61.111 0.00 0.00 0.00 4.26
1641 5309 3.126225 GCAGCAGCAGGACAGAGC 61.126 66.667 0.00 0.00 41.58 4.09
1642 5310 1.742140 CAGCAGCAGCAGGACAGAG 60.742 63.158 3.17 0.00 45.49 3.35
1643 5311 2.048419 AACAGCAGCAGCAGGACAGA 62.048 55.000 3.17 0.00 45.49 3.41
1644 5312 1.170919 AAACAGCAGCAGCAGGACAG 61.171 55.000 3.17 0.00 45.49 3.51
1645 5313 0.752743 AAAACAGCAGCAGCAGGACA 60.753 50.000 3.17 0.00 45.49 4.02
1646 5314 0.386838 AAAAACAGCAGCAGCAGGAC 59.613 50.000 3.17 0.00 45.49 3.85
1647 5315 0.386476 CAAAAACAGCAGCAGCAGGA 59.614 50.000 3.17 0.00 45.49 3.86
1648 5316 0.103572 ACAAAAACAGCAGCAGCAGG 59.896 50.000 3.17 0.00 45.49 4.85
1649 5317 2.223548 TGTACAAAAACAGCAGCAGCAG 60.224 45.455 3.17 0.00 45.49 4.24
1650 5318 1.747924 TGTACAAAAACAGCAGCAGCA 59.252 42.857 3.17 0.00 45.49 4.41
1651 5319 2.490328 TGTACAAAAACAGCAGCAGC 57.510 45.000 0.00 0.00 42.56 5.25
1652 5320 3.182972 GCATTGTACAAAAACAGCAGCAG 59.817 43.478 13.23 0.00 0.00 4.24
1653 5321 3.122297 GCATTGTACAAAAACAGCAGCA 58.878 40.909 13.23 0.00 0.00 4.41
1696 5364 9.923143 CCATAAAATGTATTCTCTCGGTACATA 57.077 33.333 0.00 0.00 37.90 2.29
1697 5365 7.387948 GCCATAAAATGTATTCTCTCGGTACAT 59.612 37.037 0.00 0.00 39.90 2.29
1698 5366 6.704493 GCCATAAAATGTATTCTCTCGGTACA 59.296 38.462 0.00 0.00 33.35 2.90
1713 5382 5.272283 AGCCTGAAGAATGCCATAAAATG 57.728 39.130 0.00 0.00 0.00 2.32
1741 5419 7.044181 TGTTCCATTTCTGCTATCAGTAGAAG 58.956 38.462 6.77 0.00 45.30 2.85
1742 5420 6.946340 TGTTCCATTTCTGCTATCAGTAGAA 58.054 36.000 3.01 3.01 43.55 2.10
1743 5421 6.155221 ACTGTTCCATTTCTGCTATCAGTAGA 59.845 38.462 0.00 0.00 41.10 2.59
1746 5424 5.171339 ACTGTTCCATTTCTGCTATCAGT 57.829 39.130 0.00 0.00 41.10 3.41
1777 5455 8.918202 AAATGTAGTTGATGTACAGGAAGAAA 57.082 30.769 0.33 0.00 33.94 2.52
1797 5475 4.455877 GTGAAAGAGGGTGAATCGAAATGT 59.544 41.667 0.00 0.00 0.00 2.71
1804 5482 7.278875 AGAATATGAGTGAAAGAGGGTGAATC 58.721 38.462 0.00 0.00 0.00 2.52
1805 5483 7.092712 TGAGAATATGAGTGAAAGAGGGTGAAT 60.093 37.037 0.00 0.00 0.00 2.57
1808 5486 5.982356 TGAGAATATGAGTGAAAGAGGGTG 58.018 41.667 0.00 0.00 0.00 4.61
1809 5487 6.214412 ACTTGAGAATATGAGTGAAAGAGGGT 59.786 38.462 0.00 0.00 0.00 4.34
1820 5498 4.993584 CCCGGATGAACTTGAGAATATGAG 59.006 45.833 0.73 0.00 0.00 2.90
1840 5518 7.154656 TGTGATAGAATGAATGTCTTATCCCG 58.845 38.462 0.00 0.00 0.00 5.14
1984 5662 3.057315 CCTCACCACCAATAGCAAACTTG 60.057 47.826 0.00 0.00 0.00 3.16
2160 5849 9.612066 TCAGCAGATTACAACATGTCATAAATA 57.388 29.630 0.00 0.00 0.00 1.40
2195 5884 6.655003 CCAGAAGCTAAAGTCCAGAATGTAAA 59.345 38.462 0.00 0.00 0.00 2.01
2199 5888 4.836825 TCCAGAAGCTAAAGTCCAGAATG 58.163 43.478 0.00 0.00 0.00 2.67
2200 5889 5.505181 TTCCAGAAGCTAAAGTCCAGAAT 57.495 39.130 0.00 0.00 0.00 2.40
2201 5890 4.974645 TTCCAGAAGCTAAAGTCCAGAA 57.025 40.909 0.00 0.00 0.00 3.02
2203 5892 3.753797 GGTTTCCAGAAGCTAAAGTCCAG 59.246 47.826 0.00 0.00 0.00 3.86
2204 5893 3.137544 TGGTTTCCAGAAGCTAAAGTCCA 59.862 43.478 0.00 0.00 0.00 4.02
2205 5894 3.502595 GTGGTTTCCAGAAGCTAAAGTCC 59.497 47.826 0.00 0.00 32.34 3.85
2206 5895 4.134563 TGTGGTTTCCAGAAGCTAAAGTC 58.865 43.478 0.00 0.00 32.34 3.01
2207 5896 4.164843 TGTGGTTTCCAGAAGCTAAAGT 57.835 40.909 0.00 0.00 32.34 2.66
2208 5897 5.514274 TTTGTGGTTTCCAGAAGCTAAAG 57.486 39.130 0.00 0.00 38.04 1.85
2209 5898 6.478512 AATTTGTGGTTTCCAGAAGCTAAA 57.521 33.333 0.00 0.00 38.04 1.85
2210 5899 6.097554 TCAAATTTGTGGTTTCCAGAAGCTAA 59.902 34.615 17.47 0.00 38.04 3.09
2211 5900 5.596361 TCAAATTTGTGGTTTCCAGAAGCTA 59.404 36.000 17.47 0.00 38.04 3.32
2212 5901 4.405358 TCAAATTTGTGGTTTCCAGAAGCT 59.595 37.500 17.47 0.00 38.04 3.74
2213 5902 4.692228 TCAAATTTGTGGTTTCCAGAAGC 58.308 39.130 17.47 0.00 38.04 3.86
2214 5903 5.906073 ACTCAAATTTGTGGTTTCCAGAAG 58.094 37.500 20.88 8.78 38.04 2.85
2220 5909 8.926715 AGTTAAGAACTCAAATTTGTGGTTTC 57.073 30.769 20.88 16.20 37.02 2.78
2314 6005 6.150140 AGCTTTAGGTTCATCTAAAAGCACAG 59.850 38.462 17.38 0.00 38.34 3.66
2324 6015 7.810260 AGGATTTATGAGCTTTAGGTTCATCT 58.190 34.615 0.00 0.00 43.22 2.90
2428 6119 6.204688 TGATCCACGAGGTAATAATCATTTGC 59.795 38.462 0.00 0.00 35.89 3.68
2465 6156 3.751175 GCAGCTTTGGTATGTACAGTTCA 59.249 43.478 0.33 0.00 0.00 3.18
2509 6212 6.016777 AGGATCTCTTGTGCAAAAGTTTGTAG 60.017 38.462 16.28 6.26 40.24 2.74
2617 6320 4.260538 GCTACATGAGAAAGAGGCATTTCG 60.261 45.833 0.00 0.14 42.73 3.46
2719 6422 9.619316 CTATACCGAAGATCTTGTCAGATTTAG 57.381 37.037 14.00 0.62 40.14 1.85
2725 6428 5.974158 CACACTATACCGAAGATCTTGTCAG 59.026 44.000 14.00 8.84 0.00 3.51
2730 6433 6.710597 TTAGCACACTATACCGAAGATCTT 57.289 37.500 7.95 7.95 0.00 2.40
2815 6518 6.470235 GCAAATCATTTACAGGAAGAATCGTG 59.530 38.462 0.00 0.00 44.91 4.35
2818 6521 7.982371 CTGCAAATCATTTACAGGAAGAATC 57.018 36.000 2.67 0.00 0.00 2.52
2835 6538 5.021458 ACTCAATCCTTTCATCCTGCAAAT 58.979 37.500 0.00 0.00 0.00 2.32
2839 6542 3.350833 ACACTCAATCCTTTCATCCTGC 58.649 45.455 0.00 0.00 0.00 4.85
2848 6551 0.250901 AGCGGCAACACTCAATCCTT 60.251 50.000 1.45 0.00 0.00 3.36
3013 6718 6.823689 TCCAATTCTCTTCCAGTTACTTATGC 59.176 38.462 0.00 0.00 0.00 3.14
3092 6797 3.859961 CCACTTACAGTGCGAGATACTTG 59.140 47.826 0.00 0.00 44.63 3.16
3221 6927 8.477256 TCAGAAATTGTTTGAATTCTGGAAAGT 58.523 29.630 7.05 0.00 45.51 2.66
3272 6979 9.685276 TGAAATGTAGAACAAGATGGATTGTAT 57.315 29.630 0.00 0.00 42.49 2.29
3285 6992 6.151691 GCTGCATCTTTTGAAATGTAGAACA 58.848 36.000 4.89 0.00 37.68 3.18
3289 6996 7.972277 ACTAATGCTGCATCTTTTGAAATGTAG 59.028 33.333 16.55 11.07 38.27 2.74
3369 7076 9.083036 ATGATTGTTTCAGAGCCTGATAATGGC 62.083 40.741 5.83 0.00 43.47 4.40
3370 7077 5.591472 TGATTGTTTCAGAGCCTGATAATGG 59.409 40.000 5.83 0.00 40.39 3.16
3371 7078 6.688637 TGATTGTTTCAGAGCCTGATAATG 57.311 37.500 5.83 0.00 40.39 1.90
3372 7079 7.893124 AATGATTGTTTCAGAGCCTGATAAT 57.107 32.000 5.83 7.33 40.39 1.28
3373 7080 7.707624 AAATGATTGTTTCAGAGCCTGATAA 57.292 32.000 5.83 3.70 40.39 1.75
3374 7081 7.707624 AAAATGATTGTTTCAGAGCCTGATA 57.292 32.000 5.83 0.00 40.39 2.15
3375 7082 6.600882 AAAATGATTGTTTCAGAGCCTGAT 57.399 33.333 5.83 0.00 40.39 2.90
3376 7083 6.716628 AGTAAAATGATTGTTTCAGAGCCTGA 59.283 34.615 1.25 1.25 38.87 3.86
3377 7084 6.805271 CAGTAAAATGATTGTTTCAGAGCCTG 59.195 38.462 0.00 0.00 37.89 4.85
3378 7085 6.716628 TCAGTAAAATGATTGTTTCAGAGCCT 59.283 34.615 0.00 0.00 37.89 4.58
3379 7086 6.913170 TCAGTAAAATGATTGTTTCAGAGCC 58.087 36.000 0.00 0.00 37.89 4.70
3380 7087 8.801715 TTTCAGTAAAATGATTGTTTCAGAGC 57.198 30.769 0.00 0.00 37.89 4.09
3381 7088 9.403110 CCTTTCAGTAAAATGATTGTTTCAGAG 57.597 33.333 0.00 0.00 37.89 3.35
3382 7089 9.130661 TCCTTTCAGTAAAATGATTGTTTCAGA 57.869 29.630 0.00 0.00 37.89 3.27
3383 7090 9.748708 TTCCTTTCAGTAAAATGATTGTTTCAG 57.251 29.630 0.00 0.00 37.89 3.02
3389 7096 9.918630 AAGTGATTCCTTTCAGTAAAATGATTG 57.081 29.630 0.00 0.00 0.00 2.67
3403 7110 6.260936 CACAATAGCGGATAAGTGATTCCTTT 59.739 38.462 3.95 0.00 0.00 3.11
3407 7114 5.023551 GCACAATAGCGGATAAGTGATTC 57.976 43.478 11.71 0.00 0.00 2.52
3426 7290 5.902981 TCTTTTTGTTACGAAATGTACGCAC 59.097 36.000 9.73 0.00 31.20 5.34
3481 7345 3.064207 GACAAGCACATTAAGTCGGACA 58.936 45.455 11.27 0.00 0.00 4.02
3785 7682 3.762407 TCACTAGTTTGGCAGTGCTAA 57.238 42.857 16.11 13.15 41.58 3.09
3786 7683 3.071023 ACTTCACTAGTTTGGCAGTGCTA 59.929 43.478 16.11 5.94 41.58 3.49
3823 7720 7.664082 ACTCTGACTTCACTATGAACAAATG 57.336 36.000 0.00 0.00 32.21 2.32
3884 7782 5.569355 TCTTTCATTCAAGCTTGGACCATA 58.431 37.500 25.73 2.68 0.00 2.74
3916 7814 3.573538 TGCAACATCAGCAAACAATAGGT 59.426 39.130 0.00 0.00 39.39 3.08
3920 7818 2.629137 TCCTGCAACATCAGCAAACAAT 59.371 40.909 0.00 0.00 42.17 2.71
4016 7914 4.877823 ACCATCTACAGCAACATGTATGTG 59.122 41.667 17.13 9.67 41.61 3.21
4267 8177 5.894298 ACAGAGGATAAGGCACATTATCA 57.106 39.130 14.78 0.00 41.82 2.15
4268 8178 7.573968 AAAACAGAGGATAAGGCACATTATC 57.426 36.000 6.52 6.52 40.13 1.75
4294 8204 2.143122 GACGAGCCATTGTGTCAGAAA 58.857 47.619 0.00 0.00 0.00 2.52
4296 8206 0.037326 GGACGAGCCATTGTGTCAGA 60.037 55.000 0.00 0.00 36.34 3.27
4297 8207 0.036952 AGGACGAGCCATTGTGTCAG 60.037 55.000 0.00 0.00 40.02 3.51
4376 8286 2.500098 TGCTTGCTTAGGGTTCGATACT 59.500 45.455 0.00 0.00 0.00 2.12
4408 8318 6.545666 TGATGTACAGAATTCAACACTTGGTT 59.454 34.615 8.44 0.00 41.47 3.67
4433 8343 2.224621 GCACAGGAGGCACATGGTATAT 60.225 50.000 1.10 0.00 34.35 0.86
4465 8375 8.641498 ACTATTTTCTGTGGAAATGAAGTCAT 57.359 30.769 0.00 0.00 40.57 3.06
4566 8478 3.068732 GCTGGAAGGGCCTTTGATTTATC 59.931 47.826 21.92 4.48 37.63 1.75
4567 8479 3.033909 GCTGGAAGGGCCTTTGATTTAT 58.966 45.455 21.92 0.00 37.63 1.40
4592 8505 7.962964 ATTATCTGAATATGTGTAACCGTGG 57.037 36.000 0.00 0.00 34.36 4.94
4695 8608 2.425312 TGGTTTGGTTGTACAAGCTGTG 59.575 45.455 31.38 0.00 39.38 3.66
4703 8616 3.018149 TGTGTTCCTGGTTTGGTTGTAC 58.982 45.455 0.00 0.00 0.00 2.90
4733 8646 7.835634 TTCCCAGTTTAATTGAAAACACAAC 57.164 32.000 6.60 0.00 40.97 3.32
4736 8649 7.835634 TGTTTCCCAGTTTAATTGAAAACAC 57.164 32.000 12.91 0.00 40.97 3.32
4737 8650 8.887717 CAATGTTTCCCAGTTTAATTGAAAACA 58.112 29.630 16.49 16.49 40.97 2.83
4738 8651 7.855409 GCAATGTTTCCCAGTTTAATTGAAAAC 59.145 33.333 9.59 9.59 39.22 2.43
4739 8652 7.772757 AGCAATGTTTCCCAGTTTAATTGAAAA 59.227 29.630 0.00 0.00 0.00 2.29
4740 8653 7.278875 AGCAATGTTTCCCAGTTTAATTGAAA 58.721 30.769 0.00 0.00 0.00 2.69
4741 8654 6.825610 AGCAATGTTTCCCAGTTTAATTGAA 58.174 32.000 0.00 0.00 0.00 2.69
4742 8655 6.418057 AGCAATGTTTCCCAGTTTAATTGA 57.582 33.333 0.00 0.00 0.00 2.57
4743 8656 6.566376 GCAAGCAATGTTTCCCAGTTTAATTG 60.566 38.462 0.00 0.00 0.00 2.32
4744 8657 5.469760 GCAAGCAATGTTTCCCAGTTTAATT 59.530 36.000 0.00 0.00 0.00 1.40
4745 8658 4.996758 GCAAGCAATGTTTCCCAGTTTAAT 59.003 37.500 0.00 0.00 0.00 1.40
4746 8659 4.100808 AGCAAGCAATGTTTCCCAGTTTAA 59.899 37.500 0.00 0.00 0.00 1.52
4747 8660 3.640967 AGCAAGCAATGTTTCCCAGTTTA 59.359 39.130 0.00 0.00 0.00 2.01
4748 8661 2.435437 AGCAAGCAATGTTTCCCAGTTT 59.565 40.909 0.00 0.00 0.00 2.66
4749 8662 2.041701 AGCAAGCAATGTTTCCCAGTT 58.958 42.857 0.00 0.00 0.00 3.16
4788 8701 8.344098 AGCATGTTTTTGTTGTTTTGGAATATG 58.656 29.630 0.00 0.00 0.00 1.78
4850 8763 4.081531 GGAAATGGGCAAATGATGTTCAGA 60.082 41.667 0.00 0.00 0.00 3.27
4882 8795 2.191375 CATGCAGAGGATGGCGGT 59.809 61.111 0.00 0.00 0.00 5.68
4970 8883 7.123997 ACTGTACCATGGAAATCATTAATTGCA 59.876 33.333 21.47 0.00 32.92 4.08
5050 8963 1.416401 GTCTTTCATGGCCGGATCCTA 59.584 52.381 5.05 0.00 0.00 2.94
5054 8967 0.107017 CCTGTCTTTCATGGCCGGAT 60.107 55.000 5.05 0.00 0.00 4.18
5108 9021 0.469705 TTGGTGCAGGGATGTTGCTT 60.470 50.000 0.00 0.00 42.02 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.