Multiple sequence alignment - TraesCS5D01G452700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G452700 chr5D 100.000 5367 0 0 665 6031 500496894 500491528 0.000000e+00 9912
1 TraesCS5D01G452700 chr5D 100.000 352 0 0 1 352 500497558 500497207 0.000000e+00 651
2 TraesCS5D01G452700 chr5D 82.390 159 25 3 3982 4139 176094373 176094217 1.050000e-27 135
3 TraesCS5D01G452700 chr5A 94.657 4735 184 28 665 5366 626997485 626992787 0.000000e+00 7278
4 TraesCS5D01G452700 chr5A 94.262 610 30 4 5423 6031 626992633 626992028 0.000000e+00 928
5 TraesCS5D01G452700 chr5A 82.895 152 24 2 3988 4138 161916384 161916534 1.050000e-27 135
6 TraesCS5D01G452700 chr5B 94.544 2676 96 24 2727 5366 622043672 622041011 0.000000e+00 4087
7 TraesCS5D01G452700 chr5B 93.553 1303 65 11 665 1955 622054148 622052853 0.000000e+00 1923
8 TraesCS5D01G452700 chr5B 95.729 1077 41 3 1666 2738 622052842 622051767 0.000000e+00 1729
9 TraesCS5D01G452700 chr5B 94.098 610 29 6 5425 6031 622040865 622040260 0.000000e+00 920


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G452700 chr5D 500491528 500497558 6030 True 5281.5 9912 100.0000 1 6031 2 chr5D.!!$R2 6030
1 TraesCS5D01G452700 chr5A 626992028 626997485 5457 True 4103.0 7278 94.4595 665 6031 2 chr5A.!!$R1 5366
2 TraesCS5D01G452700 chr5B 622040260 622043672 3412 True 2503.5 4087 94.3210 2727 6031 2 chr5B.!!$R1 3304
3 TraesCS5D01G452700 chr5B 622051767 622054148 2381 True 1826.0 1923 94.6410 665 2738 2 chr5B.!!$R2 2073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.030235 GGGTGTTCGTTCCTTTGCAC 59.970 55.000 0.00 0.00 0.00 4.57 F
764 766 0.181350 ATTCCAAGGATGTCGAGGGC 59.819 55.000 0.00 0.00 0.00 5.19 F
1915 2227 0.690744 AGGCCATAAACATTGCCCCC 60.691 55.000 5.01 0.00 45.14 5.40 F
2196 2508 1.323534 GTGGTTCAGCAACTATACGCG 59.676 52.381 3.53 3.53 32.50 6.01 F
3922 4242 2.000447 GGTTGGATACTGTGCGAAGAC 59.000 52.381 0.00 0.00 37.61 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1350 0.528249 GCCGTGCAGCCCAATTAATG 60.528 55.000 0.00 0.0 0.00 1.90 R
1955 2267 1.410153 CAGGCCCATGCTTGAATTACC 59.590 52.381 0.00 0.0 46.84 2.85 R
3147 3462 0.475906 AACAAAGAGGTCTGCTGGCT 59.524 50.000 0.00 0.0 0.00 4.75 R
4183 4503 2.223537 TATGTCAGCACCGCATACAG 57.776 50.000 0.00 0.0 31.24 2.74 R
5760 6218 1.133598 AGTGATGCGCCATGATTTGTG 59.866 47.619 4.18 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.029838 AAGATCATGTCGTGAAGCCC 57.970 50.000 0.00 0.00 40.97 5.19
20 21 0.179000 AGATCATGTCGTGAAGCCCC 59.821 55.000 0.00 0.00 40.97 5.80
21 22 0.815615 GATCATGTCGTGAAGCCCCC 60.816 60.000 0.00 0.00 40.97 5.40
22 23 1.274703 ATCATGTCGTGAAGCCCCCT 61.275 55.000 0.00 0.00 40.97 4.79
23 24 1.450312 CATGTCGTGAAGCCCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
24 25 1.918293 ATGTCGTGAAGCCCCCTCA 60.918 57.895 0.00 0.00 0.00 3.86
25 26 1.488705 ATGTCGTGAAGCCCCCTCAA 61.489 55.000 0.00 0.00 0.00 3.02
26 27 1.376037 GTCGTGAAGCCCCCTCAAG 60.376 63.158 0.00 0.00 0.00 3.02
27 28 1.535444 TCGTGAAGCCCCCTCAAGA 60.535 57.895 0.00 0.00 0.00 3.02
28 29 1.078848 CGTGAAGCCCCCTCAAGAG 60.079 63.158 0.00 0.00 0.00 2.85
29 30 1.544825 CGTGAAGCCCCCTCAAGAGA 61.545 60.000 0.00 0.00 0.00 3.10
30 31 0.251634 GTGAAGCCCCCTCAAGAGAG 59.748 60.000 0.00 0.00 41.72 3.20
31 32 0.178891 TGAAGCCCCCTCAAGAGAGT 60.179 55.000 0.00 0.00 40.40 3.24
32 33 0.988063 GAAGCCCCCTCAAGAGAGTT 59.012 55.000 0.00 0.00 40.40 3.01
33 34 0.695347 AAGCCCCCTCAAGAGAGTTG 59.305 55.000 0.00 0.00 40.40 3.16
34 35 1.204113 AGCCCCCTCAAGAGAGTTGG 61.204 60.000 0.00 0.00 40.40 3.77
35 36 1.201429 GCCCCCTCAAGAGAGTTGGA 61.201 60.000 0.00 0.00 40.40 3.53
36 37 0.615850 CCCCCTCAAGAGAGTTGGAC 59.384 60.000 0.00 0.00 40.40 4.02
37 38 0.247736 CCCCTCAAGAGAGTTGGACG 59.752 60.000 0.00 0.00 40.40 4.79
38 39 1.257743 CCCTCAAGAGAGTTGGACGA 58.742 55.000 0.00 0.00 40.40 4.20
39 40 1.067495 CCCTCAAGAGAGTTGGACGAC 60.067 57.143 0.00 0.00 40.40 4.34
40 41 1.613925 CCTCAAGAGAGTTGGACGACA 59.386 52.381 0.00 0.00 40.40 4.35
41 42 2.035961 CCTCAAGAGAGTTGGACGACAA 59.964 50.000 0.00 0.00 40.40 3.18
42 43 3.492656 CCTCAAGAGAGTTGGACGACAAA 60.493 47.826 0.00 0.00 41.58 2.83
43 44 3.717707 TCAAGAGAGTTGGACGACAAAG 58.282 45.455 0.00 0.00 41.58 2.77
44 45 2.802816 CAAGAGAGTTGGACGACAAAGG 59.197 50.000 0.00 0.00 41.58 3.11
45 46 2.040178 AGAGAGTTGGACGACAAAGGT 58.960 47.619 0.00 0.00 41.58 3.50
46 47 2.434702 AGAGAGTTGGACGACAAAGGTT 59.565 45.455 0.00 0.00 41.58 3.50
47 48 3.640029 AGAGAGTTGGACGACAAAGGTTA 59.360 43.478 0.00 0.00 41.58 2.85
48 49 3.988517 GAGAGTTGGACGACAAAGGTTAG 59.011 47.826 0.00 0.00 41.58 2.34
49 50 2.479275 GAGTTGGACGACAAAGGTTAGC 59.521 50.000 0.00 0.00 41.58 3.09
50 51 1.534163 GTTGGACGACAAAGGTTAGCC 59.466 52.381 0.00 0.00 41.58 3.93
51 52 0.320073 TGGACGACAAAGGTTAGCCG 60.320 55.000 0.00 0.00 40.50 5.52
52 53 0.037975 GGACGACAAAGGTTAGCCGA 60.038 55.000 0.00 0.00 40.50 5.54
53 54 1.066136 GACGACAAAGGTTAGCCGAC 58.934 55.000 0.00 0.00 40.50 4.79
54 55 0.677842 ACGACAAAGGTTAGCCGACT 59.322 50.000 0.00 0.00 40.50 4.18
55 56 1.069668 ACGACAAAGGTTAGCCGACTT 59.930 47.619 0.00 0.00 40.50 3.01
56 57 1.459592 CGACAAAGGTTAGCCGACTTG 59.540 52.381 6.59 6.59 40.50 3.16
57 58 2.762745 GACAAAGGTTAGCCGACTTGA 58.237 47.619 12.69 0.00 40.50 3.02
58 59 3.335579 GACAAAGGTTAGCCGACTTGAT 58.664 45.455 12.69 1.36 40.50 2.57
59 60 3.074412 ACAAAGGTTAGCCGACTTGATG 58.926 45.455 12.69 0.11 40.50 3.07
60 61 3.244422 ACAAAGGTTAGCCGACTTGATGA 60.244 43.478 12.69 0.00 40.50 2.92
61 62 2.969628 AGGTTAGCCGACTTGATGAG 57.030 50.000 0.00 0.00 40.50 2.90
62 63 1.482593 AGGTTAGCCGACTTGATGAGG 59.517 52.381 0.00 0.00 40.50 3.86
69 70 3.411415 CCGACTTGATGAGGCATTTTC 57.589 47.619 0.00 0.00 30.26 2.29
70 71 2.098117 CCGACTTGATGAGGCATTTTCC 59.902 50.000 0.00 0.00 30.26 3.13
71 72 3.012518 CGACTTGATGAGGCATTTTCCT 58.987 45.455 0.00 0.00 39.67 3.36
79 80 2.125773 AGGCATTTTCCTCTGAGCAG 57.874 50.000 0.00 0.00 0.00 4.24
80 81 0.455005 GGCATTTTCCTCTGAGCAGC 59.545 55.000 0.00 0.00 0.00 5.25
81 82 1.461559 GCATTTTCCTCTGAGCAGCT 58.538 50.000 0.00 0.00 0.00 4.24
82 83 1.817447 GCATTTTCCTCTGAGCAGCTT 59.183 47.619 0.00 0.00 0.00 3.74
83 84 2.230750 GCATTTTCCTCTGAGCAGCTTT 59.769 45.455 0.00 0.00 0.00 3.51
84 85 3.672781 GCATTTTCCTCTGAGCAGCTTTC 60.673 47.826 0.00 0.00 0.00 2.62
85 86 2.191128 TTTCCTCTGAGCAGCTTTCC 57.809 50.000 0.00 0.00 0.00 3.13
86 87 1.059098 TTCCTCTGAGCAGCTTTCCA 58.941 50.000 0.00 0.00 0.00 3.53
87 88 1.059098 TCCTCTGAGCAGCTTTCCAA 58.941 50.000 0.00 0.00 0.00 3.53
88 89 1.163554 CCTCTGAGCAGCTTTCCAAC 58.836 55.000 0.00 0.00 0.00 3.77
89 90 1.163554 CTCTGAGCAGCTTTCCAACC 58.836 55.000 0.00 0.00 0.00 3.77
90 91 0.767375 TCTGAGCAGCTTTCCAACCT 59.233 50.000 0.00 0.00 0.00 3.50
91 92 1.143684 TCTGAGCAGCTTTCCAACCTT 59.856 47.619 0.00 0.00 0.00 3.50
92 93 1.268899 CTGAGCAGCTTTCCAACCTTG 59.731 52.381 0.00 0.00 0.00 3.61
93 94 1.133823 TGAGCAGCTTTCCAACCTTGA 60.134 47.619 0.00 0.00 0.00 3.02
94 95 1.538950 GAGCAGCTTTCCAACCTTGAG 59.461 52.381 0.00 0.00 0.00 3.02
95 96 0.038801 GCAGCTTTCCAACCTTGAGC 60.039 55.000 0.00 0.00 0.00 4.26
96 97 1.321474 CAGCTTTCCAACCTTGAGCA 58.679 50.000 0.00 0.00 35.86 4.26
97 98 1.682854 CAGCTTTCCAACCTTGAGCAA 59.317 47.619 0.00 0.00 35.86 3.91
98 99 2.101249 CAGCTTTCCAACCTTGAGCAAA 59.899 45.455 0.00 0.00 35.86 3.68
99 100 2.363359 AGCTTTCCAACCTTGAGCAAAG 59.637 45.455 0.00 0.00 35.86 2.77
100 101 2.101415 GCTTTCCAACCTTGAGCAAAGT 59.899 45.455 0.00 0.00 33.66 2.66
101 102 3.317993 GCTTTCCAACCTTGAGCAAAGTA 59.682 43.478 0.00 0.00 33.66 2.24
102 103 4.793028 GCTTTCCAACCTTGAGCAAAGTAC 60.793 45.833 0.00 0.00 33.66 2.73
103 104 3.569194 TCCAACCTTGAGCAAAGTACA 57.431 42.857 0.00 0.00 33.66 2.90
104 105 3.892284 TCCAACCTTGAGCAAAGTACAA 58.108 40.909 0.00 0.00 33.66 2.41
105 106 3.882888 TCCAACCTTGAGCAAAGTACAAG 59.117 43.478 0.00 0.00 40.12 3.16
106 107 3.882888 CCAACCTTGAGCAAAGTACAAGA 59.117 43.478 0.00 0.00 42.12 3.02
107 108 4.338118 CCAACCTTGAGCAAAGTACAAGAA 59.662 41.667 0.00 0.00 42.12 2.52
108 109 5.163561 CCAACCTTGAGCAAAGTACAAGAAA 60.164 40.000 0.00 0.00 42.12 2.52
109 110 6.461509 CCAACCTTGAGCAAAGTACAAGAAAT 60.462 38.462 0.00 0.00 42.12 2.17
110 111 6.715347 ACCTTGAGCAAAGTACAAGAAATT 57.285 33.333 0.00 0.00 42.12 1.82
111 112 6.739112 ACCTTGAGCAAAGTACAAGAAATTC 58.261 36.000 0.00 0.00 42.12 2.17
112 113 6.547510 ACCTTGAGCAAAGTACAAGAAATTCT 59.452 34.615 0.00 0.00 42.12 2.40
113 114 6.860023 CCTTGAGCAAAGTACAAGAAATTCTG 59.140 38.462 0.00 0.00 42.12 3.02
114 115 6.317789 TGAGCAAAGTACAAGAAATTCTGG 57.682 37.500 0.00 0.00 0.00 3.86
115 116 5.126396 AGCAAAGTACAAGAAATTCTGGC 57.874 39.130 0.00 0.00 0.00 4.85
116 117 4.021981 AGCAAAGTACAAGAAATTCTGGCC 60.022 41.667 0.00 0.00 0.00 5.36
117 118 4.021981 GCAAAGTACAAGAAATTCTGGCCT 60.022 41.667 3.32 0.00 0.00 5.19
118 119 5.509670 GCAAAGTACAAGAAATTCTGGCCTT 60.510 40.000 3.32 0.00 0.00 4.35
119 120 5.712152 AAGTACAAGAAATTCTGGCCTTG 57.288 39.130 3.32 0.00 41.12 3.61
121 122 4.520492 AGTACAAGAAATTCTGGCCTTGTG 59.480 41.667 3.32 0.00 45.86 3.33
122 123 2.629617 ACAAGAAATTCTGGCCTTGTGG 59.370 45.455 3.32 0.00 45.01 4.17
123 124 2.892852 CAAGAAATTCTGGCCTTGTGGA 59.107 45.455 3.32 0.00 33.34 4.02
124 125 3.463048 AGAAATTCTGGCCTTGTGGAT 57.537 42.857 3.32 0.00 34.57 3.41
125 126 3.094572 AGAAATTCTGGCCTTGTGGATG 58.905 45.455 3.32 0.00 34.57 3.51
126 127 2.905415 AATTCTGGCCTTGTGGATGA 57.095 45.000 3.32 0.00 34.57 2.92
127 128 2.431954 ATTCTGGCCTTGTGGATGAG 57.568 50.000 3.32 0.00 34.57 2.90
128 129 1.067295 TTCTGGCCTTGTGGATGAGT 58.933 50.000 3.32 0.00 34.57 3.41
129 130 1.067295 TCTGGCCTTGTGGATGAGTT 58.933 50.000 3.32 0.00 34.57 3.01
130 131 1.425066 TCTGGCCTTGTGGATGAGTTT 59.575 47.619 3.32 0.00 34.57 2.66
131 132 1.542915 CTGGCCTTGTGGATGAGTTTG 59.457 52.381 3.32 0.00 34.57 2.93
132 133 1.133513 TGGCCTTGTGGATGAGTTTGT 60.134 47.619 3.32 0.00 34.57 2.83
133 134 1.541588 GGCCTTGTGGATGAGTTTGTC 59.458 52.381 0.00 0.00 34.57 3.18
134 135 1.541588 GCCTTGTGGATGAGTTTGTCC 59.458 52.381 0.00 0.00 34.57 4.02
135 136 2.862541 CCTTGTGGATGAGTTTGTCCA 58.137 47.619 0.00 0.00 42.03 4.02
136 137 3.221771 CCTTGTGGATGAGTTTGTCCAA 58.778 45.455 0.00 0.00 45.50 3.53
137 138 3.636300 CCTTGTGGATGAGTTTGTCCAAA 59.364 43.478 0.00 0.00 45.50 3.28
138 139 4.499696 CCTTGTGGATGAGTTTGTCCAAAC 60.500 45.833 13.66 13.66 45.50 2.93
139 140 7.460769 CCTTGTGGATGAGTTTGTCCAAACC 62.461 48.000 16.96 10.49 45.50 3.27
173 174 6.817765 GTGAAGACACATTTCATTTAGGGA 57.182 37.500 0.00 0.00 45.32 4.20
174 175 6.612306 GTGAAGACACATTTCATTTAGGGAC 58.388 40.000 0.00 0.00 45.32 4.46
175 176 5.710099 TGAAGACACATTTCATTTAGGGACC 59.290 40.000 0.00 0.00 30.03 4.46
176 177 5.255397 AGACACATTTCATTTAGGGACCA 57.745 39.130 0.00 0.00 0.00 4.02
177 178 5.831103 AGACACATTTCATTTAGGGACCAT 58.169 37.500 0.00 0.00 0.00 3.55
178 179 6.256053 AGACACATTTCATTTAGGGACCATT 58.744 36.000 0.00 0.00 0.00 3.16
179 180 6.725834 AGACACATTTCATTTAGGGACCATTT 59.274 34.615 0.00 0.00 0.00 2.32
180 181 7.893302 AGACACATTTCATTTAGGGACCATTTA 59.107 33.333 0.00 0.00 0.00 1.40
181 182 8.066612 ACACATTTCATTTAGGGACCATTTAG 57.933 34.615 0.00 0.00 0.00 1.85
182 183 7.893302 ACACATTTCATTTAGGGACCATTTAGA 59.107 33.333 0.00 0.00 0.00 2.10
183 184 8.408601 CACATTTCATTTAGGGACCATTTAGAG 58.591 37.037 0.00 0.00 0.00 2.43
184 185 8.116026 ACATTTCATTTAGGGACCATTTAGAGT 58.884 33.333 0.00 0.00 0.00 3.24
185 186 7.938140 TTTCATTTAGGGACCATTTAGAGTG 57.062 36.000 0.00 0.00 0.00 3.51
186 187 6.001449 TCATTTAGGGACCATTTAGAGTGG 57.999 41.667 0.00 0.00 42.55 4.00
204 205 6.061231 GAGTGGTTAAACTCAGTTTCAAGG 57.939 41.667 5.92 0.00 44.98 3.61
205 206 4.887655 AGTGGTTAAACTCAGTTTCAAGGG 59.112 41.667 5.92 0.00 37.01 3.95
206 207 4.643334 GTGGTTAAACTCAGTTTCAAGGGT 59.357 41.667 5.92 0.00 37.01 4.34
207 208 4.642885 TGGTTAAACTCAGTTTCAAGGGTG 59.357 41.667 5.92 0.00 37.01 4.61
208 209 4.643334 GGTTAAACTCAGTTTCAAGGGTGT 59.357 41.667 5.92 0.00 37.01 4.16
209 210 5.126545 GGTTAAACTCAGTTTCAAGGGTGTT 59.873 40.000 5.92 0.00 37.01 3.32
210 211 4.983671 AAACTCAGTTTCAAGGGTGTTC 57.016 40.909 0.00 0.00 28.86 3.18
211 212 2.561569 ACTCAGTTTCAAGGGTGTTCG 58.438 47.619 0.00 0.00 0.00 3.95
212 213 2.093128 ACTCAGTTTCAAGGGTGTTCGT 60.093 45.455 0.00 0.00 0.00 3.85
213 214 2.943033 CTCAGTTTCAAGGGTGTTCGTT 59.057 45.455 0.00 0.00 0.00 3.85
214 215 2.940410 TCAGTTTCAAGGGTGTTCGTTC 59.060 45.455 0.00 0.00 0.00 3.95
215 216 2.032924 CAGTTTCAAGGGTGTTCGTTCC 59.967 50.000 0.00 0.00 0.00 3.62
216 217 2.092592 AGTTTCAAGGGTGTTCGTTCCT 60.093 45.455 0.00 0.00 0.00 3.36
217 218 2.686405 GTTTCAAGGGTGTTCGTTCCTT 59.314 45.455 0.00 0.00 41.15 3.36
218 219 2.721425 TCAAGGGTGTTCGTTCCTTT 57.279 45.000 0.00 0.00 38.70 3.11
219 220 2.294074 TCAAGGGTGTTCGTTCCTTTG 58.706 47.619 0.00 0.00 38.70 2.77
220 221 1.029681 AAGGGTGTTCGTTCCTTTGC 58.970 50.000 0.00 0.00 37.60 3.68
221 222 0.106918 AGGGTGTTCGTTCCTTTGCA 60.107 50.000 0.00 0.00 0.00 4.08
222 223 0.030235 GGGTGTTCGTTCCTTTGCAC 59.970 55.000 0.00 0.00 0.00 4.57
223 224 1.021968 GGTGTTCGTTCCTTTGCACT 58.978 50.000 0.00 0.00 0.00 4.40
224 225 1.002792 GGTGTTCGTTCCTTTGCACTC 60.003 52.381 0.00 0.00 0.00 3.51
225 226 1.668751 GTGTTCGTTCCTTTGCACTCA 59.331 47.619 0.00 0.00 0.00 3.41
226 227 2.290641 GTGTTCGTTCCTTTGCACTCAT 59.709 45.455 0.00 0.00 0.00 2.90
227 228 2.948979 TGTTCGTTCCTTTGCACTCATT 59.051 40.909 0.00 0.00 0.00 2.57
228 229 3.003275 TGTTCGTTCCTTTGCACTCATTC 59.997 43.478 0.00 0.00 0.00 2.67
229 230 3.126001 TCGTTCCTTTGCACTCATTCT 57.874 42.857 0.00 0.00 0.00 2.40
230 231 3.067106 TCGTTCCTTTGCACTCATTCTC 58.933 45.455 0.00 0.00 0.00 2.87
231 232 2.160417 CGTTCCTTTGCACTCATTCTCC 59.840 50.000 0.00 0.00 0.00 3.71
232 233 3.149196 GTTCCTTTGCACTCATTCTCCA 58.851 45.455 0.00 0.00 0.00 3.86
233 234 3.726557 TCCTTTGCACTCATTCTCCAT 57.273 42.857 0.00 0.00 0.00 3.41
234 235 4.842531 TCCTTTGCACTCATTCTCCATA 57.157 40.909 0.00 0.00 0.00 2.74
235 236 5.178096 TCCTTTGCACTCATTCTCCATAA 57.822 39.130 0.00 0.00 0.00 1.90
236 237 5.759059 TCCTTTGCACTCATTCTCCATAAT 58.241 37.500 0.00 0.00 0.00 1.28
237 238 5.824624 TCCTTTGCACTCATTCTCCATAATC 59.175 40.000 0.00 0.00 0.00 1.75
238 239 5.591472 CCTTTGCACTCATTCTCCATAATCA 59.409 40.000 0.00 0.00 0.00 2.57
239 240 6.264744 CCTTTGCACTCATTCTCCATAATCAT 59.735 38.462 0.00 0.00 0.00 2.45
240 241 6.872628 TTGCACTCATTCTCCATAATCATC 57.127 37.500 0.00 0.00 0.00 2.92
241 242 5.932455 TGCACTCATTCTCCATAATCATCA 58.068 37.500 0.00 0.00 0.00 3.07
242 243 5.995897 TGCACTCATTCTCCATAATCATCAG 59.004 40.000 0.00 0.00 0.00 2.90
243 244 6.183361 TGCACTCATTCTCCATAATCATCAGA 60.183 38.462 0.00 0.00 0.00 3.27
244 245 6.709397 GCACTCATTCTCCATAATCATCAGAA 59.291 38.462 0.00 0.00 0.00 3.02
245 246 7.307870 GCACTCATTCTCCATAATCATCAGAAC 60.308 40.741 0.00 0.00 0.00 3.01
246 247 6.927936 ACTCATTCTCCATAATCATCAGAACG 59.072 38.462 0.00 0.00 0.00 3.95
247 248 6.226052 TCATTCTCCATAATCATCAGAACGG 58.774 40.000 0.00 0.00 0.00 4.44
248 249 5.869649 TTCTCCATAATCATCAGAACGGA 57.130 39.130 0.00 0.00 0.00 4.69
249 250 5.459536 TCTCCATAATCATCAGAACGGAG 57.540 43.478 0.00 0.00 40.15 4.63
250 251 5.140454 TCTCCATAATCATCAGAACGGAGA 58.860 41.667 0.00 0.00 44.17 3.71
251 252 5.777223 TCTCCATAATCATCAGAACGGAGAT 59.223 40.000 0.00 0.00 42.12 2.75
252 253 6.948309 TCTCCATAATCATCAGAACGGAGATA 59.052 38.462 0.00 0.00 42.12 1.98
253 254 7.617329 TCTCCATAATCATCAGAACGGAGATAT 59.383 37.037 0.00 0.00 42.12 1.63
254 255 8.823220 TCCATAATCATCAGAACGGAGATATA 57.177 34.615 0.00 0.00 0.00 0.86
255 256 9.255029 TCCATAATCATCAGAACGGAGATATAA 57.745 33.333 0.00 0.00 0.00 0.98
256 257 9.875691 CCATAATCATCAGAACGGAGATATAAA 57.124 33.333 0.00 0.00 0.00 1.40
260 261 8.783833 ATCATCAGAACGGAGATATAAATTGG 57.216 34.615 0.00 0.00 0.00 3.16
261 262 7.962441 TCATCAGAACGGAGATATAAATTGGA 58.038 34.615 0.00 0.00 0.00 3.53
262 263 8.597167 TCATCAGAACGGAGATATAAATTGGAT 58.403 33.333 0.00 0.00 0.00 3.41
263 264 8.663025 CATCAGAACGGAGATATAAATTGGATG 58.337 37.037 0.00 0.00 0.00 3.51
264 265 6.650807 TCAGAACGGAGATATAAATTGGATGC 59.349 38.462 0.00 0.00 0.00 3.91
265 266 6.652481 CAGAACGGAGATATAAATTGGATGCT 59.348 38.462 0.00 0.00 0.00 3.79
266 267 7.173907 CAGAACGGAGATATAAATTGGATGCTT 59.826 37.037 0.00 0.00 0.00 3.91
267 268 7.389053 AGAACGGAGATATAAATTGGATGCTTC 59.611 37.037 0.00 0.00 0.00 3.86
268 269 6.773638 ACGGAGATATAAATTGGATGCTTCT 58.226 36.000 0.00 0.00 0.00 2.85
269 270 6.876257 ACGGAGATATAAATTGGATGCTTCTC 59.124 38.462 0.00 0.00 0.00 2.87
270 271 6.875726 CGGAGATATAAATTGGATGCTTCTCA 59.124 38.462 0.00 0.00 31.04 3.27
271 272 7.388776 CGGAGATATAAATTGGATGCTTCTCAA 59.611 37.037 0.00 3.29 31.04 3.02
272 273 8.728833 GGAGATATAAATTGGATGCTTCTCAAG 58.271 37.037 0.00 0.00 31.04 3.02
273 274 9.499479 GAGATATAAATTGGATGCTTCTCAAGA 57.501 33.333 0.00 0.00 0.00 3.02
282 283 8.627208 TTGGATGCTTCTCAAGATATTATTCC 57.373 34.615 0.00 0.00 0.00 3.01
283 284 7.748677 TGGATGCTTCTCAAGATATTATTCCA 58.251 34.615 0.00 0.00 0.00 3.53
284 285 7.663081 TGGATGCTTCTCAAGATATTATTCCAC 59.337 37.037 0.00 0.00 0.00 4.02
285 286 7.882271 GGATGCTTCTCAAGATATTATTCCACT 59.118 37.037 0.00 0.00 0.00 4.00
286 287 9.935241 GATGCTTCTCAAGATATTATTCCACTA 57.065 33.333 0.00 0.00 0.00 2.74
287 288 9.717942 ATGCTTCTCAAGATATTATTCCACTAC 57.282 33.333 0.00 0.00 0.00 2.73
288 289 8.928448 TGCTTCTCAAGATATTATTCCACTACT 58.072 33.333 0.00 0.00 0.00 2.57
294 295 9.656323 TCAAGATATTATTCCACTACTAGGTGT 57.344 33.333 0.00 0.00 35.63 4.16
295 296 9.915629 CAAGATATTATTCCACTACTAGGTGTC 57.084 37.037 0.00 0.00 35.63 3.67
296 297 9.656323 AAGATATTATTCCACTACTAGGTGTCA 57.344 33.333 0.00 0.00 35.63 3.58
297 298 9.830186 AGATATTATTCCACTACTAGGTGTCAT 57.170 33.333 0.00 0.00 35.63 3.06
299 300 7.914427 ATTATTCCACTACTAGGTGTCATCA 57.086 36.000 0.00 0.00 35.63 3.07
300 301 7.914427 TTATTCCACTACTAGGTGTCATCAT 57.086 36.000 0.00 0.00 35.63 2.45
301 302 5.854010 TTCCACTACTAGGTGTCATCATC 57.146 43.478 0.00 0.00 35.63 2.92
302 303 4.215908 TCCACTACTAGGTGTCATCATCC 58.784 47.826 0.00 0.00 35.63 3.51
303 304 4.079154 TCCACTACTAGGTGTCATCATCCT 60.079 45.833 0.00 0.00 35.63 3.24
304 305 5.133830 TCCACTACTAGGTGTCATCATCCTA 59.866 44.000 0.00 0.00 35.63 2.94
305 306 5.833667 CCACTACTAGGTGTCATCATCCTAA 59.166 44.000 0.00 0.00 34.08 2.69
306 307 6.495181 CCACTACTAGGTGTCATCATCCTAAT 59.505 42.308 0.00 0.00 34.08 1.73
307 308 7.309499 CCACTACTAGGTGTCATCATCCTAATC 60.309 44.444 0.00 0.00 34.08 1.75
308 309 5.713792 ACTAGGTGTCATCATCCTAATCG 57.286 43.478 0.00 0.00 34.08 3.34
309 310 5.141182 ACTAGGTGTCATCATCCTAATCGT 58.859 41.667 0.00 0.00 34.08 3.73
310 311 4.592485 AGGTGTCATCATCCTAATCGTC 57.408 45.455 0.00 0.00 0.00 4.20
311 312 3.004839 AGGTGTCATCATCCTAATCGTCG 59.995 47.826 0.00 0.00 0.00 5.12
312 313 3.004419 GGTGTCATCATCCTAATCGTCGA 59.996 47.826 0.00 0.00 0.00 4.20
313 314 3.975670 GTGTCATCATCCTAATCGTCGAC 59.024 47.826 5.18 5.18 0.00 4.20
314 315 3.630312 TGTCATCATCCTAATCGTCGACA 59.370 43.478 17.16 3.13 0.00 4.35
315 316 4.278419 TGTCATCATCCTAATCGTCGACAT 59.722 41.667 17.16 5.54 0.00 3.06
316 317 4.854291 GTCATCATCCTAATCGTCGACATC 59.146 45.833 17.16 0.00 0.00 3.06
317 318 4.518970 TCATCATCCTAATCGTCGACATCA 59.481 41.667 17.16 0.00 0.00 3.07
318 319 4.911514 TCATCCTAATCGTCGACATCAA 57.088 40.909 17.16 0.00 0.00 2.57
319 320 4.860072 TCATCCTAATCGTCGACATCAAG 58.140 43.478 17.16 7.14 0.00 3.02
320 321 3.710326 TCCTAATCGTCGACATCAAGG 57.290 47.619 17.16 15.66 0.00 3.61
321 322 3.284617 TCCTAATCGTCGACATCAAGGA 58.715 45.455 17.16 17.60 0.00 3.36
322 323 3.697542 TCCTAATCGTCGACATCAAGGAA 59.302 43.478 17.16 4.65 0.00 3.36
323 324 4.045104 CCTAATCGTCGACATCAAGGAAG 58.955 47.826 17.16 1.53 0.00 3.46
324 325 2.586258 ATCGTCGACATCAAGGAAGG 57.414 50.000 17.16 0.00 0.00 3.46
325 326 1.541379 TCGTCGACATCAAGGAAGGA 58.459 50.000 17.16 0.00 0.00 3.36
326 327 2.100197 TCGTCGACATCAAGGAAGGAT 58.900 47.619 17.16 0.00 0.00 3.24
327 328 2.496070 TCGTCGACATCAAGGAAGGATT 59.504 45.455 17.16 0.00 0.00 3.01
328 329 2.860735 CGTCGACATCAAGGAAGGATTC 59.139 50.000 17.16 0.00 46.67 2.52
343 344 6.286240 GAAGGATTCAAAAATGGTAAGGCT 57.714 37.500 0.00 0.00 46.62 4.58
344 345 7.404671 GAAGGATTCAAAAATGGTAAGGCTA 57.595 36.000 0.00 0.00 46.62 3.93
345 346 6.775594 AGGATTCAAAAATGGTAAGGCTAC 57.224 37.500 0.00 0.00 0.00 3.58
346 347 6.252995 AGGATTCAAAAATGGTAAGGCTACA 58.747 36.000 0.00 0.00 0.00 2.74
347 348 6.897413 AGGATTCAAAAATGGTAAGGCTACAT 59.103 34.615 0.00 0.00 0.00 2.29
348 349 6.980397 GGATTCAAAAATGGTAAGGCTACATG 59.020 38.462 0.00 0.00 0.00 3.21
349 350 6.909550 TTCAAAAATGGTAAGGCTACATGT 57.090 33.333 2.69 2.69 0.00 3.21
350 351 6.509418 TCAAAAATGGTAAGGCTACATGTC 57.491 37.500 0.00 0.00 0.00 3.06
351 352 6.007076 TCAAAAATGGTAAGGCTACATGTCA 58.993 36.000 0.00 0.00 0.00 3.58
740 742 1.265905 GAACGGCATTCCTGAAAACGT 59.734 47.619 0.00 0.00 32.37 3.99
764 766 0.181350 ATTCCAAGGATGTCGAGGGC 59.819 55.000 0.00 0.00 0.00 5.19
765 767 0.909610 TTCCAAGGATGTCGAGGGCT 60.910 55.000 0.00 0.00 0.00 5.19
780 782 5.066505 GTCGAGGGCTATGAATTCAATTTGT 59.933 40.000 13.09 0.00 0.00 2.83
782 784 5.594926 GAGGGCTATGAATTCAATTTGTGG 58.405 41.667 13.09 0.00 0.00 4.17
829 831 4.658786 AGGTTCTCGGGGTGGCCT 62.659 66.667 3.32 0.00 0.00 5.19
1098 1103 1.673767 TGGCCAAGGAGAAGAAGGAT 58.326 50.000 0.61 0.00 0.00 3.24
1193 1198 1.881324 GCTCTCCTACCTCATCGGTAC 59.119 57.143 0.00 0.00 46.73 3.34
1226 1231 0.747255 CCGTTGATCCATCCGTCTCT 59.253 55.000 0.00 0.00 0.00 3.10
1275 1280 2.365095 GATCGTCCGTTGGGCCTAGG 62.365 65.000 3.67 3.67 0.00 3.02
1328 1338 2.803956 TCCGTTGTTTCTTCGAATGTCC 59.196 45.455 0.00 0.00 0.00 4.02
1340 1350 1.728971 CGAATGTCCTGTGCAGTTCTC 59.271 52.381 0.00 0.00 0.00 2.87
1816 2125 8.023021 TGCAATCTAATATGACCTACTGAGTT 57.977 34.615 0.00 0.00 0.00 3.01
1877 2189 5.219896 CGTTCATGAGTTGAATTGCATTTCG 60.220 40.000 14.72 1.62 45.77 3.46
1882 2194 5.698832 TGAGTTGAATTGCATTTCGGTTAG 58.301 37.500 14.72 0.00 0.00 2.34
1910 2222 4.795970 GACGTAGAGGCCATAAACATTG 57.204 45.455 5.01 0.00 0.00 2.82
1914 2226 0.752658 GAGGCCATAAACATTGCCCC 59.247 55.000 5.01 0.00 45.14 5.80
1915 2227 0.690744 AGGCCATAAACATTGCCCCC 60.691 55.000 5.01 0.00 45.14 5.40
1919 2231 2.290577 GCCATAAACATTGCCCCCAAAA 60.291 45.455 0.00 0.00 34.05 2.44
1923 2235 3.421919 AAACATTGCCCCCAAAATGAG 57.578 42.857 2.60 0.00 37.26 2.90
1964 2276 9.675464 AAATAGTTCTACATTCCGGTAATTCAA 57.325 29.630 0.00 0.00 0.00 2.69
1970 2282 3.381272 ACATTCCGGTAATTCAAGCATGG 59.619 43.478 0.00 0.00 0.00 3.66
2104 2416 4.523083 TCTAATGGTAGGCATGTTCAACC 58.477 43.478 0.00 0.00 0.00 3.77
2128 2440 7.067008 ACCATTACCTTCTTTTATCATTCCGTG 59.933 37.037 0.00 0.00 0.00 4.94
2196 2508 1.323534 GTGGTTCAGCAACTATACGCG 59.676 52.381 3.53 3.53 32.50 6.01
2295 2607 9.378597 GAACTCAATTTCTTAACGTACCTTTTC 57.621 33.333 0.00 0.00 0.00 2.29
2538 2850 9.549078 AAGGTCAGAAGCTACTTTTATAATAGC 57.451 33.333 8.05 8.05 41.39 2.97
2564 2876 5.336929 CCAAATCAGGATCAGAACAATTGCA 60.337 40.000 5.05 0.00 0.00 4.08
3112 3427 5.702349 AGAGACAATTGAAGCCAAAGAAG 57.298 39.130 13.59 0.00 35.67 2.85
3222 3537 5.771165 GGTAGTAGATTAGGACTCTCCTTGG 59.229 48.000 0.00 0.00 46.91 3.61
3468 3783 4.400529 TGTGCTGTGACCGTAATATCAT 57.599 40.909 0.00 0.00 0.00 2.45
3599 3914 9.970395 CATATAAGCCATTCATATGTGTTTGTT 57.030 29.630 1.90 0.00 31.08 2.83
3705 4025 5.648960 AGAGAAGAAGAACCCTAGTCTAACG 59.351 44.000 0.00 0.00 0.00 3.18
3922 4242 2.000447 GGTTGGATACTGTGCGAAGAC 59.000 52.381 0.00 0.00 37.61 3.01
4036 4356 2.564062 AGATTTCAGGCAAACATGGTGG 59.436 45.455 0.00 0.00 0.00 4.61
4140 4460 5.295292 CGATGTGATCCAGCAAGAAGTATTT 59.705 40.000 0.00 0.00 0.00 1.40
4145 4465 7.283127 TGTGATCCAGCAAGAAGTATTTAATCC 59.717 37.037 0.00 0.00 0.00 3.01
4183 4503 6.791303 TCTCTTTGTTGTGTGTAAAATGTCC 58.209 36.000 0.00 0.00 0.00 4.02
4371 4695 2.607771 CCTTTGACGCCAATGTTCTTGG 60.608 50.000 0.00 0.00 42.37 3.61
4424 4748 3.516300 TCCTGACGTAGCCTAATTTTCCA 59.484 43.478 0.00 0.00 0.00 3.53
4538 4864 6.437928 TGTGTACATTCTTGCTTTCATCAAC 58.562 36.000 0.00 0.00 0.00 3.18
4590 4924 9.978044 CTGAATGTCTCACATCTGATTAAGATA 57.022 33.333 0.00 0.00 44.24 1.98
4645 4979 4.386424 GGAAAATATCACCTTGTAGGGCCT 60.386 45.833 12.58 12.58 40.58 5.19
4756 5108 4.539408 CGATTCACGTTGCGAACAGCTT 62.539 50.000 0.00 0.00 41.11 3.74
4849 5201 3.732048 ATTGTGTCCCGGGTAAGATTT 57.268 42.857 22.86 0.00 0.00 2.17
4850 5202 2.483014 TGTGTCCCGGGTAAGATTTG 57.517 50.000 22.86 0.00 0.00 2.32
4852 5204 0.034863 TGTCCCGGGTAAGATTTGCC 60.035 55.000 22.86 0.00 34.30 4.52
4856 5208 1.896465 CCCGGGTAAGATTTGCCAAAA 59.104 47.619 14.18 0.00 37.12 2.44
4857 5209 2.094234 CCCGGGTAAGATTTGCCAAAAG 60.094 50.000 14.18 0.00 37.12 2.27
4858 5210 2.606108 CGGGTAAGATTTGCCAAAAGC 58.394 47.619 0.00 0.00 44.14 3.51
4859 5211 2.231235 CGGGTAAGATTTGCCAAAAGCT 59.769 45.455 0.00 0.00 43.74 3.74
4907 5259 8.792830 TCGAAGTTCCTGATTCTTTCAATAAT 57.207 30.769 0.00 0.00 32.78 1.28
4940 5292 3.165875 GGACTCAATCGGGAGGATCATA 58.834 50.000 0.00 0.00 39.27 2.15
5033 5385 2.124695 CCGGCTGGTTCTTAGGCC 60.125 66.667 2.29 0.00 41.02 5.19
5091 5445 1.226018 GAAGAATTTCGCGGGCACG 60.226 57.895 2.50 2.50 44.63 5.34
5186 5542 9.961265 GCATCATCTTATTCTTTCATTTGATCA 57.039 29.630 0.00 0.00 0.00 2.92
5221 5577 9.788960 TTGTAATATATGAGTGATCGCTATGAC 57.211 33.333 9.20 2.82 0.00 3.06
5306 5662 6.897259 ATTTGTATTGCAATGCTTGATGTC 57.103 33.333 24.99 5.23 36.89 3.06
5409 5835 8.491331 TTTTTAAGCAAATTTAGGGATGCATC 57.509 30.769 18.81 18.81 41.18 3.91
5459 5914 6.617317 GCATACAAGCAAGCAATAGATACTCG 60.617 42.308 0.00 0.00 0.00 4.18
5491 5946 4.878397 CGCTCTTGGGACTAATCTGATTTT 59.122 41.667 8.38 0.00 0.00 1.82
5492 5947 5.355350 CGCTCTTGGGACTAATCTGATTTTT 59.645 40.000 8.38 0.00 0.00 1.94
5508 5963 8.477419 TCTGATTTTTCAAACTTAAGGGTCAT 57.523 30.769 7.53 0.00 0.00 3.06
5546 6001 4.335315 TGCTCGTCATCAATACCAAAATCC 59.665 41.667 0.00 0.00 0.00 3.01
5569 6026 3.918270 ACTTGGGGCCTAAAAGTACCTTA 59.082 43.478 15.14 0.00 32.48 2.69
5639 6096 1.135431 GCGCCAGTGATTTGTGCATAA 60.135 47.619 0.00 0.00 0.00 1.90
5640 6097 2.670789 GCGCCAGTGATTTGTGCATAAA 60.671 45.455 11.24 11.24 0.00 1.40
5685 6142 1.331756 GGAGATACATTTGGCTGCACG 59.668 52.381 0.50 0.00 0.00 5.34
5704 6162 1.741706 CGGTACCACTACAGACGACAT 59.258 52.381 13.54 0.00 0.00 3.06
5760 6218 8.970691 ATTACTAGCACAAATCAAATGACAAC 57.029 30.769 0.00 0.00 0.00 3.32
5840 6298 3.190874 CCGAGGATAACAAAGCTGAGTC 58.809 50.000 0.00 0.00 0.00 3.36
5846 6304 6.410540 AGGATAACAAAGCTGAGTCTTAAGG 58.589 40.000 1.85 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.407437 GGGGCTTCACGACATGATCTT 60.407 52.381 0.00 0.00 37.11 2.40
1 2 0.179000 GGGGCTTCACGACATGATCT 59.821 55.000 0.00 0.00 37.11 2.75
2 3 0.815615 GGGGGCTTCACGACATGATC 60.816 60.000 0.00 0.00 37.11 2.92
3 4 1.224592 GGGGGCTTCACGACATGAT 59.775 57.895 0.00 0.00 37.11 2.45
4 5 1.899437 GAGGGGGCTTCACGACATGA 61.899 60.000 0.00 0.00 34.65 3.07
5 6 1.450312 GAGGGGGCTTCACGACATG 60.450 63.158 0.00 0.00 0.00 3.21
6 7 1.488705 TTGAGGGGGCTTCACGACAT 61.489 55.000 0.00 0.00 0.00 3.06
7 8 2.111999 CTTGAGGGGGCTTCACGACA 62.112 60.000 0.00 0.00 0.00 4.35
8 9 1.376037 CTTGAGGGGGCTTCACGAC 60.376 63.158 0.00 0.00 0.00 4.34
9 10 1.535444 TCTTGAGGGGGCTTCACGA 60.535 57.895 0.00 0.00 0.00 4.35
10 11 1.078848 CTCTTGAGGGGGCTTCACG 60.079 63.158 0.00 0.00 0.00 4.35
11 12 0.251634 CTCTCTTGAGGGGGCTTCAC 59.748 60.000 0.00 0.00 36.70 3.18
12 13 0.178891 ACTCTCTTGAGGGGGCTTCA 60.179 55.000 2.36 0.00 44.29 3.02
13 14 0.988063 AACTCTCTTGAGGGGGCTTC 59.012 55.000 2.36 0.00 44.29 3.86
14 15 0.695347 CAACTCTCTTGAGGGGGCTT 59.305 55.000 2.36 0.00 44.29 4.35
15 16 1.204113 CCAACTCTCTTGAGGGGGCT 61.204 60.000 2.36 0.00 44.29 5.19
16 17 1.201429 TCCAACTCTCTTGAGGGGGC 61.201 60.000 2.36 0.00 44.29 5.80
17 18 0.615850 GTCCAACTCTCTTGAGGGGG 59.384 60.000 2.36 0.00 44.29 5.40
18 19 0.247736 CGTCCAACTCTCTTGAGGGG 59.752 60.000 2.36 0.00 44.29 4.79
19 20 1.067495 GTCGTCCAACTCTCTTGAGGG 60.067 57.143 0.00 0.00 44.29 4.30
20 21 1.613925 TGTCGTCCAACTCTCTTGAGG 59.386 52.381 0.00 0.00 44.29 3.86
21 22 3.371102 TTGTCGTCCAACTCTCTTGAG 57.629 47.619 0.00 0.00 45.43 3.02
22 23 3.492656 CCTTTGTCGTCCAACTCTCTTGA 60.493 47.826 0.00 0.00 31.20 3.02
23 24 2.802816 CCTTTGTCGTCCAACTCTCTTG 59.197 50.000 0.00 0.00 31.20 3.02
24 25 2.434702 ACCTTTGTCGTCCAACTCTCTT 59.565 45.455 0.00 0.00 31.20 2.85
25 26 2.040178 ACCTTTGTCGTCCAACTCTCT 58.960 47.619 0.00 0.00 31.20 3.10
26 27 2.528041 ACCTTTGTCGTCCAACTCTC 57.472 50.000 0.00 0.00 31.20 3.20
27 28 3.802675 GCTAACCTTTGTCGTCCAACTCT 60.803 47.826 0.00 0.00 31.20 3.24
28 29 2.479275 GCTAACCTTTGTCGTCCAACTC 59.521 50.000 0.00 0.00 31.20 3.01
29 30 2.490991 GCTAACCTTTGTCGTCCAACT 58.509 47.619 0.00 0.00 31.20 3.16
30 31 1.534163 GGCTAACCTTTGTCGTCCAAC 59.466 52.381 0.00 0.00 31.20 3.77
31 32 1.874739 CGGCTAACCTTTGTCGTCCAA 60.875 52.381 0.00 0.00 0.00 3.53
32 33 0.320073 CGGCTAACCTTTGTCGTCCA 60.320 55.000 0.00 0.00 0.00 4.02
33 34 0.037975 TCGGCTAACCTTTGTCGTCC 60.038 55.000 0.00 0.00 33.07 4.79
34 35 1.066136 GTCGGCTAACCTTTGTCGTC 58.934 55.000 0.00 0.00 33.07 4.20
35 36 0.677842 AGTCGGCTAACCTTTGTCGT 59.322 50.000 0.00 0.00 33.07 4.34
36 37 1.459592 CAAGTCGGCTAACCTTTGTCG 59.540 52.381 0.00 0.00 32.56 4.35
37 38 2.762745 TCAAGTCGGCTAACCTTTGTC 58.237 47.619 0.00 0.00 0.00 3.18
38 39 2.922740 TCAAGTCGGCTAACCTTTGT 57.077 45.000 0.00 0.00 0.00 2.83
39 40 3.334691 TCATCAAGTCGGCTAACCTTTG 58.665 45.455 0.00 0.00 0.00 2.77
40 41 3.600388 CTCATCAAGTCGGCTAACCTTT 58.400 45.455 0.00 0.00 0.00 3.11
41 42 2.093447 CCTCATCAAGTCGGCTAACCTT 60.093 50.000 0.00 0.00 0.00 3.50
42 43 1.482593 CCTCATCAAGTCGGCTAACCT 59.517 52.381 0.00 0.00 0.00 3.50
43 44 1.941325 CCTCATCAAGTCGGCTAACC 58.059 55.000 0.00 0.00 0.00 2.85
44 45 1.291132 GCCTCATCAAGTCGGCTAAC 58.709 55.000 0.00 0.00 39.42 2.34
45 46 0.901827 TGCCTCATCAAGTCGGCTAA 59.098 50.000 0.00 0.00 42.90 3.09
46 47 1.123077 ATGCCTCATCAAGTCGGCTA 58.877 50.000 0.00 0.00 42.90 3.93
47 48 0.254178 AATGCCTCATCAAGTCGGCT 59.746 50.000 0.00 0.00 42.90 5.52
48 49 1.098050 AAATGCCTCATCAAGTCGGC 58.902 50.000 0.00 0.00 42.78 5.54
49 50 2.098117 GGAAAATGCCTCATCAAGTCGG 59.902 50.000 0.00 0.00 0.00 4.79
50 51 3.012518 AGGAAAATGCCTCATCAAGTCG 58.987 45.455 0.00 0.00 30.76 4.18
60 61 1.954258 GCTGCTCAGAGGAAAATGCCT 60.954 52.381 0.00 0.00 42.17 4.75
61 62 0.455005 GCTGCTCAGAGGAAAATGCC 59.545 55.000 0.00 0.00 0.00 4.40
62 63 1.461559 AGCTGCTCAGAGGAAAATGC 58.538 50.000 0.00 0.00 0.00 3.56
63 64 3.119566 GGAAAGCTGCTCAGAGGAAAATG 60.120 47.826 1.00 0.00 0.00 2.32
64 65 3.087781 GGAAAGCTGCTCAGAGGAAAAT 58.912 45.455 1.00 0.00 0.00 1.82
65 66 2.158623 TGGAAAGCTGCTCAGAGGAAAA 60.159 45.455 1.00 0.00 0.00 2.29
66 67 1.421268 TGGAAAGCTGCTCAGAGGAAA 59.579 47.619 1.00 0.00 0.00 3.13
67 68 1.059098 TGGAAAGCTGCTCAGAGGAA 58.941 50.000 1.00 0.00 0.00 3.36
68 69 1.059098 TTGGAAAGCTGCTCAGAGGA 58.941 50.000 1.00 0.00 0.00 3.71
69 70 1.163554 GTTGGAAAGCTGCTCAGAGG 58.836 55.000 1.00 0.00 0.00 3.69
70 71 1.163554 GGTTGGAAAGCTGCTCAGAG 58.836 55.000 1.00 0.00 42.05 3.35
71 72 3.329300 GGTTGGAAAGCTGCTCAGA 57.671 52.632 1.00 0.00 42.05 3.27
79 80 2.101415 ACTTTGCTCAAGGTTGGAAAGC 59.899 45.455 6.83 0.00 46.62 3.51
80 81 4.338118 TGTACTTTGCTCAAGGTTGGAAAG 59.662 41.667 2.77 0.00 36.72 2.62
81 82 4.274147 TGTACTTTGCTCAAGGTTGGAAA 58.726 39.130 2.77 0.00 36.72 3.13
82 83 3.892284 TGTACTTTGCTCAAGGTTGGAA 58.108 40.909 2.77 0.00 36.72 3.53
83 84 3.569194 TGTACTTTGCTCAAGGTTGGA 57.431 42.857 2.77 0.00 36.72 3.53
84 85 3.882888 TCTTGTACTTTGCTCAAGGTTGG 59.117 43.478 2.77 0.00 38.99 3.77
85 86 5.499139 TTCTTGTACTTTGCTCAAGGTTG 57.501 39.130 2.77 0.00 38.99 3.77
86 87 6.715347 ATTTCTTGTACTTTGCTCAAGGTT 57.285 33.333 2.77 0.00 38.99 3.50
87 88 6.547510 AGAATTTCTTGTACTTTGCTCAAGGT 59.452 34.615 3.00 3.00 38.99 3.50
88 89 6.860023 CAGAATTTCTTGTACTTTGCTCAAGG 59.140 38.462 0.00 0.00 38.99 3.61
89 90 6.860023 CCAGAATTTCTTGTACTTTGCTCAAG 59.140 38.462 0.00 0.00 39.59 3.02
90 91 6.735694 GCCAGAATTTCTTGTACTTTGCTCAA 60.736 38.462 0.00 0.00 0.00 3.02
91 92 5.278463 GCCAGAATTTCTTGTACTTTGCTCA 60.278 40.000 0.00 0.00 0.00 4.26
92 93 5.157067 GCCAGAATTTCTTGTACTTTGCTC 58.843 41.667 0.00 0.00 0.00 4.26
93 94 4.021981 GGCCAGAATTTCTTGTACTTTGCT 60.022 41.667 0.00 0.00 0.00 3.91
94 95 4.021981 AGGCCAGAATTTCTTGTACTTTGC 60.022 41.667 5.01 0.00 0.00 3.68
95 96 5.712152 AGGCCAGAATTTCTTGTACTTTG 57.288 39.130 5.01 0.00 0.00 2.77
96 97 5.598417 ACAAGGCCAGAATTTCTTGTACTTT 59.402 36.000 5.01 0.00 45.21 2.66
97 98 5.010012 CACAAGGCCAGAATTTCTTGTACTT 59.990 40.000 5.01 0.91 45.26 2.24
98 99 4.520492 CACAAGGCCAGAATTTCTTGTACT 59.480 41.667 5.01 0.00 45.26 2.73
99 100 4.321230 CCACAAGGCCAGAATTTCTTGTAC 60.321 45.833 5.01 0.00 45.26 2.90
100 101 3.826157 CCACAAGGCCAGAATTTCTTGTA 59.174 43.478 5.01 0.00 45.26 2.41
102 103 2.892852 TCCACAAGGCCAGAATTTCTTG 59.107 45.455 5.01 0.00 41.46 3.02
103 104 3.243359 TCCACAAGGCCAGAATTTCTT 57.757 42.857 5.01 0.00 33.74 2.52
104 105 2.978156 TCCACAAGGCCAGAATTTCT 57.022 45.000 5.01 0.00 33.74 2.52
105 106 3.091545 TCATCCACAAGGCCAGAATTTC 58.908 45.455 5.01 0.00 33.74 2.17
106 107 3.094572 CTCATCCACAAGGCCAGAATTT 58.905 45.455 5.01 0.00 33.74 1.82
107 108 2.042162 ACTCATCCACAAGGCCAGAATT 59.958 45.455 5.01 0.00 33.74 2.17
108 109 1.637553 ACTCATCCACAAGGCCAGAAT 59.362 47.619 5.01 0.00 33.74 2.40
109 110 1.067295 ACTCATCCACAAGGCCAGAA 58.933 50.000 5.01 0.00 33.74 3.02
110 111 1.067295 AACTCATCCACAAGGCCAGA 58.933 50.000 5.01 0.00 33.74 3.86
111 112 1.542915 CAAACTCATCCACAAGGCCAG 59.457 52.381 5.01 0.00 33.74 4.85
112 113 1.133513 ACAAACTCATCCACAAGGCCA 60.134 47.619 5.01 0.00 33.74 5.36
113 114 1.541588 GACAAACTCATCCACAAGGCC 59.458 52.381 0.00 0.00 33.74 5.19
114 115 1.541588 GGACAAACTCATCCACAAGGC 59.458 52.381 0.00 0.00 34.87 4.35
115 116 2.862541 TGGACAAACTCATCCACAAGG 58.137 47.619 0.00 0.00 40.17 3.61
116 117 4.499696 GGTTTGGACAAACTCATCCACAAG 60.500 45.833 22.65 0.00 44.80 3.16
117 118 3.383185 GGTTTGGACAAACTCATCCACAA 59.617 43.478 22.65 0.00 44.80 3.33
118 119 2.955660 GGTTTGGACAAACTCATCCACA 59.044 45.455 22.65 0.00 44.80 4.17
119 120 2.955660 TGGTTTGGACAAACTCATCCAC 59.044 45.455 22.65 8.79 44.80 4.02
138 139 6.764308 ATGTGTCTTCACCATTCTAAATGG 57.236 37.500 15.48 15.48 43.26 3.16
139 140 8.298854 TGAAATGTGTCTTCACCATTCTAAATG 58.701 33.333 11.45 0.00 43.26 2.32
140 141 8.408043 TGAAATGTGTCTTCACCATTCTAAAT 57.592 30.769 11.45 0.00 43.26 1.40
141 142 7.815840 TGAAATGTGTCTTCACCATTCTAAA 57.184 32.000 11.45 0.00 43.26 1.85
142 143 8.408043 AATGAAATGTGTCTTCACCATTCTAA 57.592 30.769 11.45 0.00 43.26 2.10
143 144 8.408043 AAATGAAATGTGTCTTCACCATTCTA 57.592 30.769 11.45 0.00 43.26 2.10
144 145 6.906157 AATGAAATGTGTCTTCACCATTCT 57.094 33.333 11.45 0.00 43.26 2.40
145 146 7.756722 CCTAAATGAAATGTGTCTTCACCATTC 59.243 37.037 0.00 0.00 43.26 2.67
146 147 7.309990 CCCTAAATGAAATGTGTCTTCACCATT 60.310 37.037 0.00 0.00 43.26 3.16
147 148 6.153340 CCCTAAATGAAATGTGTCTTCACCAT 59.847 38.462 0.00 0.00 43.26 3.55
148 149 5.476599 CCCTAAATGAAATGTGTCTTCACCA 59.523 40.000 0.00 0.00 43.26 4.17
149 150 5.710099 TCCCTAAATGAAATGTGTCTTCACC 59.290 40.000 0.00 0.00 43.26 4.02
150 151 6.349363 GGTCCCTAAATGAAATGTGTCTTCAC 60.349 42.308 0.00 0.00 44.08 3.18
151 152 5.710099 GGTCCCTAAATGAAATGTGTCTTCA 59.290 40.000 0.00 0.00 37.22 3.02
152 153 5.710099 TGGTCCCTAAATGAAATGTGTCTTC 59.290 40.000 0.00 0.00 0.00 2.87
153 154 5.640147 TGGTCCCTAAATGAAATGTGTCTT 58.360 37.500 0.00 0.00 0.00 3.01
154 155 5.255397 TGGTCCCTAAATGAAATGTGTCT 57.745 39.130 0.00 0.00 0.00 3.41
155 156 6.530019 AATGGTCCCTAAATGAAATGTGTC 57.470 37.500 0.00 0.00 0.00 3.67
156 157 6.933514 AAATGGTCCCTAAATGAAATGTGT 57.066 33.333 0.00 0.00 0.00 3.72
157 158 8.292444 TCTAAATGGTCCCTAAATGAAATGTG 57.708 34.615 0.00 0.00 0.00 3.21
158 159 8.116026 ACTCTAAATGGTCCCTAAATGAAATGT 58.884 33.333 0.00 0.00 0.00 2.71
159 160 8.408601 CACTCTAAATGGTCCCTAAATGAAATG 58.591 37.037 0.00 0.00 0.00 2.32
160 161 7.561356 CCACTCTAAATGGTCCCTAAATGAAAT 59.439 37.037 0.00 0.00 32.08 2.17
161 162 6.889722 CCACTCTAAATGGTCCCTAAATGAAA 59.110 38.462 0.00 0.00 32.08 2.69
162 163 6.423182 CCACTCTAAATGGTCCCTAAATGAA 58.577 40.000 0.00 0.00 32.08 2.57
163 164 6.001449 CCACTCTAAATGGTCCCTAAATGA 57.999 41.667 0.00 0.00 32.08 2.57
174 175 7.745620 AACTGAGTTTAACCACTCTAAATGG 57.254 36.000 8.41 0.00 43.32 3.16
175 176 8.836413 TGAAACTGAGTTTAACCACTCTAAATG 58.164 33.333 11.01 0.00 43.32 2.32
176 177 8.974060 TGAAACTGAGTTTAACCACTCTAAAT 57.026 30.769 11.01 0.00 43.32 1.40
177 178 8.795842 TTGAAACTGAGTTTAACCACTCTAAA 57.204 30.769 11.01 0.00 43.32 1.85
178 179 7.497909 CCTTGAAACTGAGTTTAACCACTCTAA 59.502 37.037 11.01 0.00 43.32 2.10
179 180 6.990349 CCTTGAAACTGAGTTTAACCACTCTA 59.010 38.462 11.01 0.00 43.32 2.43
180 181 5.823045 CCTTGAAACTGAGTTTAACCACTCT 59.177 40.000 11.01 0.00 43.32 3.24
181 182 5.008712 CCCTTGAAACTGAGTTTAACCACTC 59.991 44.000 11.01 0.00 43.23 3.51
182 183 4.887655 CCCTTGAAACTGAGTTTAACCACT 59.112 41.667 11.01 0.00 35.77 4.00
183 184 4.643334 ACCCTTGAAACTGAGTTTAACCAC 59.357 41.667 11.01 0.00 35.77 4.16
184 185 4.642885 CACCCTTGAAACTGAGTTTAACCA 59.357 41.667 11.01 2.17 35.77 3.67
185 186 4.643334 ACACCCTTGAAACTGAGTTTAACC 59.357 41.667 11.01 0.00 35.77 2.85
186 187 5.830000 ACACCCTTGAAACTGAGTTTAAC 57.170 39.130 11.01 0.05 35.77 2.01
187 188 5.065474 CGAACACCCTTGAAACTGAGTTTAA 59.935 40.000 11.01 0.00 35.77 1.52
188 189 4.573201 CGAACACCCTTGAAACTGAGTTTA 59.427 41.667 11.01 0.00 35.77 2.01
189 190 3.377172 CGAACACCCTTGAAACTGAGTTT 59.623 43.478 10.82 10.82 38.54 2.66
190 191 2.943033 CGAACACCCTTGAAACTGAGTT 59.057 45.455 0.00 0.00 0.00 3.01
191 192 2.093128 ACGAACACCCTTGAAACTGAGT 60.093 45.455 0.00 0.00 0.00 3.41
192 193 2.561569 ACGAACACCCTTGAAACTGAG 58.438 47.619 0.00 0.00 0.00 3.35
193 194 2.702592 ACGAACACCCTTGAAACTGA 57.297 45.000 0.00 0.00 0.00 3.41
194 195 2.032924 GGAACGAACACCCTTGAAACTG 59.967 50.000 0.00 0.00 0.00 3.16
195 196 2.092592 AGGAACGAACACCCTTGAAACT 60.093 45.455 0.00 0.00 0.00 2.66
196 197 2.294979 AGGAACGAACACCCTTGAAAC 58.705 47.619 0.00 0.00 0.00 2.78
197 198 2.721425 AGGAACGAACACCCTTGAAA 57.279 45.000 0.00 0.00 0.00 2.69
198 199 2.685897 CAAAGGAACGAACACCCTTGAA 59.314 45.455 0.00 0.00 39.97 2.69
199 200 2.294074 CAAAGGAACGAACACCCTTGA 58.706 47.619 0.00 0.00 39.97 3.02
200 201 1.269051 GCAAAGGAACGAACACCCTTG 60.269 52.381 0.00 0.00 39.97 3.61
201 202 1.029681 GCAAAGGAACGAACACCCTT 58.970 50.000 0.00 0.00 41.70 3.95
202 203 0.106918 TGCAAAGGAACGAACACCCT 60.107 50.000 0.00 0.00 0.00 4.34
203 204 0.030235 GTGCAAAGGAACGAACACCC 59.970 55.000 0.00 0.00 0.00 4.61
204 205 1.002792 GAGTGCAAAGGAACGAACACC 60.003 52.381 0.00 0.00 0.00 4.16
205 206 1.668751 TGAGTGCAAAGGAACGAACAC 59.331 47.619 0.00 0.00 0.00 3.32
206 207 2.031258 TGAGTGCAAAGGAACGAACA 57.969 45.000 0.00 0.00 0.00 3.18
207 208 3.251004 AGAATGAGTGCAAAGGAACGAAC 59.749 43.478 0.00 0.00 0.00 3.95
208 209 3.476552 AGAATGAGTGCAAAGGAACGAA 58.523 40.909 0.00 0.00 0.00 3.85
209 210 3.067106 GAGAATGAGTGCAAAGGAACGA 58.933 45.455 0.00 0.00 0.00 3.85
210 211 2.160417 GGAGAATGAGTGCAAAGGAACG 59.840 50.000 0.00 0.00 0.00 3.95
211 212 3.149196 TGGAGAATGAGTGCAAAGGAAC 58.851 45.455 0.00 0.00 0.00 3.62
212 213 3.507162 TGGAGAATGAGTGCAAAGGAA 57.493 42.857 0.00 0.00 0.00 3.36
213 214 3.726557 ATGGAGAATGAGTGCAAAGGA 57.273 42.857 0.00 0.00 0.00 3.36
214 215 5.591472 TGATTATGGAGAATGAGTGCAAAGG 59.409 40.000 0.00 0.00 0.00 3.11
215 216 6.688637 TGATTATGGAGAATGAGTGCAAAG 57.311 37.500 0.00 0.00 0.00 2.77
216 217 6.829811 TGATGATTATGGAGAATGAGTGCAAA 59.170 34.615 0.00 0.00 0.00 3.68
217 218 6.358991 TGATGATTATGGAGAATGAGTGCAA 58.641 36.000 0.00 0.00 0.00 4.08
218 219 5.932455 TGATGATTATGGAGAATGAGTGCA 58.068 37.500 0.00 0.00 0.00 4.57
219 220 6.228995 TCTGATGATTATGGAGAATGAGTGC 58.771 40.000 0.00 0.00 0.00 4.40
220 221 7.095732 CGTTCTGATGATTATGGAGAATGAGTG 60.096 40.741 0.00 0.00 33.35 3.51
221 222 6.927936 CGTTCTGATGATTATGGAGAATGAGT 59.072 38.462 0.00 0.00 33.35 3.41
222 223 6.368243 CCGTTCTGATGATTATGGAGAATGAG 59.632 42.308 0.00 0.00 33.35 2.90
223 224 6.041979 TCCGTTCTGATGATTATGGAGAATGA 59.958 38.462 0.00 0.00 33.35 2.57
224 225 6.226052 TCCGTTCTGATGATTATGGAGAATG 58.774 40.000 0.00 0.00 31.97 2.67
225 226 6.268617 TCTCCGTTCTGATGATTATGGAGAAT 59.731 38.462 12.63 0.00 45.62 2.40
226 227 5.598417 TCTCCGTTCTGATGATTATGGAGAA 59.402 40.000 12.63 0.00 45.62 2.87
227 228 5.140454 TCTCCGTTCTGATGATTATGGAGA 58.860 41.667 11.46 11.46 46.21 3.71
228 229 5.459536 TCTCCGTTCTGATGATTATGGAG 57.540 43.478 7.84 7.84 42.42 3.86
229 230 7.724490 ATATCTCCGTTCTGATGATTATGGA 57.276 36.000 0.00 0.00 0.00 3.41
230 231 9.875691 TTTATATCTCCGTTCTGATGATTATGG 57.124 33.333 0.00 0.00 0.00 2.74
234 235 9.224267 CCAATTTATATCTCCGTTCTGATGATT 57.776 33.333 0.00 0.00 0.00 2.57
235 236 8.597167 TCCAATTTATATCTCCGTTCTGATGAT 58.403 33.333 0.00 0.00 0.00 2.45
236 237 7.962441 TCCAATTTATATCTCCGTTCTGATGA 58.038 34.615 0.00 0.00 0.00 2.92
237 238 8.663025 CATCCAATTTATATCTCCGTTCTGATG 58.337 37.037 0.00 0.00 0.00 3.07
238 239 7.335422 GCATCCAATTTATATCTCCGTTCTGAT 59.665 37.037 0.00 0.00 0.00 2.90
239 240 6.650807 GCATCCAATTTATATCTCCGTTCTGA 59.349 38.462 0.00 0.00 0.00 3.27
240 241 6.652481 AGCATCCAATTTATATCTCCGTTCTG 59.348 38.462 0.00 0.00 0.00 3.02
241 242 6.773638 AGCATCCAATTTATATCTCCGTTCT 58.226 36.000 0.00 0.00 0.00 3.01
242 243 7.389053 AGAAGCATCCAATTTATATCTCCGTTC 59.611 37.037 0.00 0.00 0.00 3.95
243 244 7.227156 AGAAGCATCCAATTTATATCTCCGTT 58.773 34.615 0.00 0.00 0.00 4.44
244 245 6.773638 AGAAGCATCCAATTTATATCTCCGT 58.226 36.000 0.00 0.00 0.00 4.69
245 246 6.875726 TGAGAAGCATCCAATTTATATCTCCG 59.124 38.462 0.00 0.00 31.95 4.63
246 247 8.627208 TTGAGAAGCATCCAATTTATATCTCC 57.373 34.615 0.00 0.00 31.95 3.71
247 248 9.499479 TCTTGAGAAGCATCCAATTTATATCTC 57.501 33.333 0.00 0.00 33.22 2.75
256 257 9.240734 GGAATAATATCTTGAGAAGCATCCAAT 57.759 33.333 0.00 0.00 0.00 3.16
257 258 8.219868 TGGAATAATATCTTGAGAAGCATCCAA 58.780 33.333 0.00 0.00 0.00 3.53
258 259 7.663081 GTGGAATAATATCTTGAGAAGCATCCA 59.337 37.037 0.00 0.00 0.00 3.41
259 260 7.882271 AGTGGAATAATATCTTGAGAAGCATCC 59.118 37.037 0.00 0.00 0.00 3.51
260 261 8.845413 AGTGGAATAATATCTTGAGAAGCATC 57.155 34.615 0.00 0.00 0.00 3.91
261 262 9.717942 GTAGTGGAATAATATCTTGAGAAGCAT 57.282 33.333 0.00 0.00 0.00 3.79
262 263 8.928448 AGTAGTGGAATAATATCTTGAGAAGCA 58.072 33.333 0.00 0.00 0.00 3.91
268 269 9.656323 ACACCTAGTAGTGGAATAATATCTTGA 57.344 33.333 4.45 0.00 42.28 3.02
269 270 9.915629 GACACCTAGTAGTGGAATAATATCTTG 57.084 37.037 4.45 0.00 42.28 3.02
270 271 9.656323 TGACACCTAGTAGTGGAATAATATCTT 57.344 33.333 4.45 0.00 42.28 2.40
271 272 9.830186 ATGACACCTAGTAGTGGAATAATATCT 57.170 33.333 4.45 0.00 42.28 1.98
273 274 9.601810 TGATGACACCTAGTAGTGGAATAATAT 57.398 33.333 4.45 0.00 42.28 1.28
274 275 9.601810 ATGATGACACCTAGTAGTGGAATAATA 57.398 33.333 4.45 0.00 42.28 0.98
275 276 7.914427 TGATGACACCTAGTAGTGGAATAAT 57.086 36.000 4.45 0.00 42.28 1.28
276 277 7.015292 GGATGATGACACCTAGTAGTGGAATAA 59.985 40.741 4.45 0.00 42.28 1.40
277 278 6.493802 GGATGATGACACCTAGTAGTGGAATA 59.506 42.308 4.45 0.00 42.28 1.75
278 279 5.305644 GGATGATGACACCTAGTAGTGGAAT 59.694 44.000 4.45 0.00 42.28 3.01
279 280 4.649674 GGATGATGACACCTAGTAGTGGAA 59.350 45.833 4.45 0.00 42.28 3.53
280 281 4.079154 AGGATGATGACACCTAGTAGTGGA 60.079 45.833 4.45 0.00 42.28 4.02
281 282 4.219115 AGGATGATGACACCTAGTAGTGG 58.781 47.826 4.45 0.00 42.28 4.00
282 283 6.961360 TTAGGATGATGACACCTAGTAGTG 57.039 41.667 0.00 0.00 43.65 2.74
283 284 6.431543 CGATTAGGATGATGACACCTAGTAGT 59.568 42.308 0.00 0.00 37.54 2.73
284 285 6.431543 ACGATTAGGATGATGACACCTAGTAG 59.568 42.308 0.00 0.00 37.54 2.57
285 286 6.304624 ACGATTAGGATGATGACACCTAGTA 58.695 40.000 0.00 0.00 37.54 1.82
286 287 5.141182 ACGATTAGGATGATGACACCTAGT 58.859 41.667 0.00 0.00 37.54 2.57
287 288 5.617973 CGACGATTAGGATGATGACACCTAG 60.618 48.000 0.00 0.00 37.54 3.02
288 289 4.215613 CGACGATTAGGATGATGACACCTA 59.784 45.833 0.00 0.00 35.52 3.08
289 290 3.004839 CGACGATTAGGATGATGACACCT 59.995 47.826 0.00 0.00 37.76 4.00
290 291 3.004419 TCGACGATTAGGATGATGACACC 59.996 47.826 0.00 0.00 0.00 4.16
291 292 3.975670 GTCGACGATTAGGATGATGACAC 59.024 47.826 0.00 0.00 0.00 3.67
292 293 3.630312 TGTCGACGATTAGGATGATGACA 59.370 43.478 11.62 0.00 0.00 3.58
293 294 4.224715 TGTCGACGATTAGGATGATGAC 57.775 45.455 11.62 0.00 0.00 3.06
294 295 4.518970 TGATGTCGACGATTAGGATGATGA 59.481 41.667 11.62 0.00 0.00 2.92
295 296 4.798574 TGATGTCGACGATTAGGATGATG 58.201 43.478 11.62 0.00 0.00 3.07
296 297 5.453567 TTGATGTCGACGATTAGGATGAT 57.546 39.130 11.62 0.00 0.00 2.45
297 298 4.261614 CCTTGATGTCGACGATTAGGATGA 60.262 45.833 16.98 0.00 0.00 2.92
298 299 3.983988 CCTTGATGTCGACGATTAGGATG 59.016 47.826 16.98 0.84 0.00 3.51
299 300 3.889538 TCCTTGATGTCGACGATTAGGAT 59.110 43.478 19.29 4.03 0.00 3.24
300 301 3.284617 TCCTTGATGTCGACGATTAGGA 58.715 45.455 19.29 19.29 0.00 2.94
301 302 3.710326 TCCTTGATGTCGACGATTAGG 57.290 47.619 11.62 14.44 0.00 2.69
302 303 4.045104 CCTTCCTTGATGTCGACGATTAG 58.955 47.826 11.62 5.88 0.00 1.73
303 304 3.697542 TCCTTCCTTGATGTCGACGATTA 59.302 43.478 11.62 0.00 0.00 1.75
304 305 2.496070 TCCTTCCTTGATGTCGACGATT 59.504 45.455 11.62 0.00 0.00 3.34
305 306 2.100197 TCCTTCCTTGATGTCGACGAT 58.900 47.619 11.62 5.64 0.00 3.73
306 307 1.541379 TCCTTCCTTGATGTCGACGA 58.459 50.000 11.62 0.00 0.00 4.20
307 308 2.586258 ATCCTTCCTTGATGTCGACG 57.414 50.000 11.62 0.00 0.00 5.12
308 309 3.861840 TGAATCCTTCCTTGATGTCGAC 58.138 45.455 9.11 9.11 0.00 4.20
309 310 4.551702 TTGAATCCTTCCTTGATGTCGA 57.448 40.909 0.00 0.00 0.00 4.20
310 311 5.627499 TTTTGAATCCTTCCTTGATGTCG 57.373 39.130 0.00 0.00 0.00 4.35
311 312 6.815142 CCATTTTTGAATCCTTCCTTGATGTC 59.185 38.462 0.00 0.00 0.00 3.06
312 313 6.270695 ACCATTTTTGAATCCTTCCTTGATGT 59.729 34.615 0.00 0.00 0.00 3.06
313 314 6.704310 ACCATTTTTGAATCCTTCCTTGATG 58.296 36.000 0.00 0.00 0.00 3.07
314 315 6.940430 ACCATTTTTGAATCCTTCCTTGAT 57.060 33.333 0.00 0.00 0.00 2.57
315 316 7.039082 CCTTACCATTTTTGAATCCTTCCTTGA 60.039 37.037 0.00 0.00 0.00 3.02
316 317 7.099120 CCTTACCATTTTTGAATCCTTCCTTG 58.901 38.462 0.00 0.00 0.00 3.61
317 318 6.295859 GCCTTACCATTTTTGAATCCTTCCTT 60.296 38.462 0.00 0.00 0.00 3.36
318 319 5.187772 GCCTTACCATTTTTGAATCCTTCCT 59.812 40.000 0.00 0.00 0.00 3.36
319 320 5.187772 AGCCTTACCATTTTTGAATCCTTCC 59.812 40.000 0.00 0.00 0.00 3.46
320 321 6.286240 AGCCTTACCATTTTTGAATCCTTC 57.714 37.500 0.00 0.00 0.00 3.46
321 322 6.723977 TGTAGCCTTACCATTTTTGAATCCTT 59.276 34.615 0.00 0.00 0.00 3.36
322 323 6.252995 TGTAGCCTTACCATTTTTGAATCCT 58.747 36.000 0.00 0.00 0.00 3.24
323 324 6.524101 TGTAGCCTTACCATTTTTGAATCC 57.476 37.500 0.00 0.00 0.00 3.01
324 325 7.547227 ACATGTAGCCTTACCATTTTTGAATC 58.453 34.615 0.00 0.00 0.00 2.52
325 326 7.178274 TGACATGTAGCCTTACCATTTTTGAAT 59.822 33.333 0.00 0.00 0.00 2.57
326 327 6.491745 TGACATGTAGCCTTACCATTTTTGAA 59.508 34.615 0.00 0.00 0.00 2.69
327 328 6.007076 TGACATGTAGCCTTACCATTTTTGA 58.993 36.000 0.00 0.00 0.00 2.69
328 329 6.266168 TGACATGTAGCCTTACCATTTTTG 57.734 37.500 0.00 0.00 0.00 2.44
740 742 4.344102 CCCTCGACATCCTTGGAATACTTA 59.656 45.833 0.00 0.00 0.00 2.24
747 749 0.032515 TAGCCCTCGACATCCTTGGA 60.033 55.000 0.00 0.00 0.00 3.53
748 750 1.051812 ATAGCCCTCGACATCCTTGG 58.948 55.000 0.00 0.00 0.00 3.61
749 751 1.688735 TCATAGCCCTCGACATCCTTG 59.311 52.381 0.00 0.00 0.00 3.61
752 754 3.244215 TGAATTCATAGCCCTCGACATCC 60.244 47.826 3.38 0.00 0.00 3.51
754 756 4.422073 TTGAATTCATAGCCCTCGACAT 57.578 40.909 9.40 0.00 0.00 3.06
764 766 9.123902 TGGATAGACCACAAATTGAATTCATAG 57.876 33.333 9.40 2.46 44.64 2.23
782 784 3.256879 TGCGATCTCATCCTTGGATAGAC 59.743 47.826 1.37 2.23 0.00 2.59
800 802 1.798223 CGAGAACCTCACAATTTGCGA 59.202 47.619 0.00 0.00 0.00 5.10
829 831 0.596600 GAGCACGAACGGTCTGTTGA 60.597 55.000 0.56 0.00 42.09 3.18
1098 1103 2.153401 CACCTCCTTCACCACCCCA 61.153 63.158 0.00 0.00 0.00 4.96
1226 1231 4.909696 TGAAACCGAAATGAAAGAAGCA 57.090 36.364 0.00 0.00 0.00 3.91
1275 1280 2.202479 GCAAGAAATGCGACGCCC 60.202 61.111 18.69 3.96 46.87 6.13
1292 1298 1.213013 CGGACTCGTCTCCCAGTTG 59.787 63.158 0.00 0.00 0.00 3.16
1311 1317 3.003275 GCACAGGACATTCGAAGAAACAA 59.997 43.478 3.35 0.00 45.90 2.83
1319 1325 1.344438 AGAACTGCACAGGACATTCGA 59.656 47.619 2.21 0.00 0.00 3.71
1320 1326 1.728971 GAGAACTGCACAGGACATTCG 59.271 52.381 2.21 0.00 0.00 3.34
1328 1338 4.676196 GCCCAATTAATGAGAACTGCACAG 60.676 45.833 0.00 0.00 0.00 3.66
1340 1350 0.528249 GCCGTGCAGCCCAATTAATG 60.528 55.000 0.00 0.00 0.00 1.90
1386 1396 2.753043 CCAGCCACCATGCACTCC 60.753 66.667 0.00 0.00 0.00 3.85
1748 2057 8.036575 CACAATACATCCTGGTTCAATCAAAAT 58.963 33.333 0.00 0.00 0.00 1.82
1816 2125 1.663643 GCGCGAATGATTGTAAGTGGA 59.336 47.619 12.10 0.00 0.00 4.02
1877 2189 3.763127 CTACGTCCGGCCGCTAACC 62.763 68.421 22.85 3.51 0.00 2.85
1910 2222 1.758862 CCAATCTCTCATTTTGGGGGC 59.241 52.381 0.00 0.00 36.96 5.80
1941 2253 6.759827 GCTTGAATTACCGGAATGTAGAACTA 59.240 38.462 9.46 0.00 0.00 2.24
1955 2267 1.410153 CAGGCCCATGCTTGAATTACC 59.590 52.381 0.00 0.00 46.84 2.85
1964 2276 3.389002 GGAAAATAAATCAGGCCCATGCT 59.611 43.478 0.00 0.00 37.74 3.79
1970 2282 5.888161 TCTGAAGAGGAAAATAAATCAGGCC 59.112 40.000 0.00 0.00 34.91 5.19
2104 2416 8.122952 GTCACGGAATGATAAAAGAAGGTAATG 58.877 37.037 0.00 0.00 40.28 1.90
2128 2440 3.005578 ACTTTACCAACTCGGAGACAGTC 59.994 47.826 12.86 0.00 38.63 3.51
2196 2508 3.557595 CACCAGAAACAGGATCGAATAGC 59.442 47.826 0.00 0.00 0.00 2.97
2538 2850 3.370840 TGTTCTGATCCTGATTTGGGG 57.629 47.619 0.00 0.00 0.00 4.96
2564 2876 5.551305 TGAATCAGTCAATATCGATGGGT 57.449 39.130 8.54 0.00 31.51 4.51
2617 2929 4.072839 GGTGCTCTTTAAAGTACCTGCTT 58.927 43.478 21.20 0.00 45.52 3.91
2738 3052 6.537301 TGGATATTAAACAGAACTGCTAACGG 59.463 38.462 1.46 0.00 0.00 4.44
2837 3152 2.559440 GTTGATGAGATCAGCACTCCC 58.441 52.381 0.00 0.00 42.45 4.30
3092 3407 4.279420 GTCCTTCTTTGGCTTCAATTGTCT 59.721 41.667 5.13 0.00 0.00 3.41
3112 3427 3.093717 TCGTCAGTCTTCTTTGTGTCC 57.906 47.619 0.00 0.00 0.00 4.02
3147 3462 0.475906 AACAAAGAGGTCTGCTGGCT 59.524 50.000 0.00 0.00 0.00 4.75
3468 3783 3.182152 AGTTTCTTTGCTAGCCCTCCTA 58.818 45.455 13.29 0.00 0.00 2.94
3621 3939 8.114102 TCAGAGAGGAAATAAGTAGAACCTACA 58.886 37.037 6.86 0.00 0.00 2.74
3794 4114 6.608405 AGGCAATTGATATGGTCATCAAAGAA 59.392 34.615 10.34 0.00 45.46 2.52
3922 4242 8.983307 AGTTTAAATCTCTTACGTGAAGTAGG 57.017 34.615 0.00 0.00 36.56 3.18
4036 4356 9.739786 CGATTTTGTGATTAAATTTTGGTAAGC 57.260 29.630 0.00 0.00 0.00 3.09
4140 4460 3.045634 AGATGTGTTCGGGGATGGATTA 58.954 45.455 0.00 0.00 0.00 1.75
4145 4465 2.679837 CAAAGAGATGTGTTCGGGGATG 59.320 50.000 0.00 0.00 0.00 3.51
4183 4503 2.223537 TATGTCAGCACCGCATACAG 57.776 50.000 0.00 0.00 31.24 2.74
4399 4723 6.126997 TGGAAAATTAGGCTACGTCAGGATAA 60.127 38.462 0.00 0.00 0.00 1.75
4410 4734 8.710749 AATGCATCTATTGGAAAATTAGGCTA 57.289 30.769 0.00 0.00 0.00 3.93
4424 4748 7.991460 TCAGATGAAACAGAGAATGCATCTATT 59.009 33.333 0.00 0.00 40.11 1.73
4528 4854 3.944015 GAGGTCTCCCATGTTGATGAAAG 59.056 47.826 0.00 0.00 0.00 2.62
4538 4864 0.108615 GTCGTGTGAGGTCTCCCATG 60.109 60.000 0.00 0.00 0.00 3.66
4548 4874 2.706555 TCAGTAGCTTGTCGTGTGAG 57.293 50.000 0.00 0.00 0.00 3.51
4642 4976 9.237187 TCTCCATAGATGATATATAATCGAGGC 57.763 37.037 4.64 0.00 0.00 4.70
4756 5108 3.334691 CACGCCAAACTCTTCCTTGATA 58.665 45.455 0.00 0.00 0.00 2.15
4849 5201 2.300723 TCCGTAGAGTAAGCTTTTGGCA 59.699 45.455 3.20 0.00 44.79 4.92
4850 5202 2.968675 TCCGTAGAGTAAGCTTTTGGC 58.031 47.619 3.20 0.00 42.19 4.52
4852 5204 6.202188 TGAAGTTTCCGTAGAGTAAGCTTTTG 59.798 38.462 3.20 0.00 0.00 2.44
4856 5208 5.464030 TTGAAGTTTCCGTAGAGTAAGCT 57.536 39.130 0.00 0.00 0.00 3.74
4857 5209 5.695363 ACTTTGAAGTTTCCGTAGAGTAAGC 59.305 40.000 0.00 0.00 35.21 3.09
4858 5210 7.710766 AACTTTGAAGTTTCCGTAGAGTAAG 57.289 36.000 3.37 0.00 46.52 2.34
4907 5259 3.948473 CGATTGAGTCCTGGTAGAGAAGA 59.052 47.826 0.00 0.00 0.00 2.87
4985 5337 1.452110 CACGCATCACCATTTCCTCA 58.548 50.000 0.00 0.00 0.00 3.86
5043 5395 2.169789 CAATCTCTGCCACTCCGCG 61.170 63.158 0.00 0.00 0.00 6.46
5059 5411 6.727824 GAAATTCTTCGGAGAAGATGTCAA 57.272 37.500 12.62 0.00 44.65 3.18
5091 5445 2.231478 TGTCTCTCTGGATTCACGGAAC 59.769 50.000 0.00 0.00 0.00 3.62
5389 5815 5.188359 ACTTGATGCATCCCTAAATTTGCTT 59.812 36.000 23.67 0.00 36.10 3.91
5459 5914 2.335712 CCCAAGAGCGAAGGTTGCC 61.336 63.158 0.00 0.00 39.88 4.52
5514 5969 7.931407 TGGTATTGATGACGAGCAATTAATAGT 59.069 33.333 0.00 0.00 39.02 2.12
5517 5972 7.566760 TTGGTATTGATGACGAGCAATTAAT 57.433 32.000 0.00 0.00 39.02 1.40
5546 6001 2.041216 AGGTACTTTTAGGCCCCAAGTG 59.959 50.000 18.01 5.23 27.25 3.16
5639 6096 9.442047 CTTGTTCCAGATCAGAGTTAACTATTT 57.558 33.333 8.42 0.00 0.00 1.40
5640 6097 8.043710 CCTTGTTCCAGATCAGAGTTAACTATT 58.956 37.037 8.42 0.00 0.00 1.73
5652 6109 6.566079 AATGTATCTCCTTGTTCCAGATCA 57.434 37.500 0.00 0.00 0.00 2.92
5685 6142 2.490903 ACATGTCGTCTGTAGTGGTACC 59.509 50.000 4.43 4.43 0.00 3.34
5760 6218 1.133598 AGTGATGCGCCATGATTTGTG 59.866 47.619 4.18 0.00 0.00 3.33
5840 6298 4.335315 TGAAACCATTATCGCAGCCTTAAG 59.665 41.667 0.00 0.00 0.00 1.85
5846 6304 2.159393 TGCTTGAAACCATTATCGCAGC 60.159 45.455 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.