AutoCloner

Multiple sequence alignment - TraesCS5D01G452400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G452400	chr5D	100.000	2930	0	0	1	2930	500385448	500388377	0.000000e+00	5411.0
1	TraesCS5D01G452400	chr5D	100.000	31	0	0	2593	2623	500388013	500388043	1.130000e-04	58.4
2	TraesCS5D01G452400	chr5D	100.000	31	0	0	2566	2596	500388040	500388070	1.130000e-04	58.4
3	TraesCS5D01G452400	chr2D	95.054	1961	89	3	822	2775	118320314	118322273	0.000000e+00	3077.0
4	TraesCS5D01G452400	chr2D	92.593	162	11	1	2770	2930	118322302	118322463	6.310000e-57	231.0
5	TraesCS5D01G452400	chr3D	94.462	1950	98	4	833	2775	380844483	380842537	0.000000e+00	2994.0
6	TraesCS5D01G452400	chr3D	84.465	1796	244	30	818	2595	283674995	283673217	0.000000e+00	1738.0
7	TraesCS5D01G452400	chr3D	82.409	1677	269	19	851	2510	376692277	376693944	0.000000e+00	1439.0
8	TraesCS5D01G452400	chr3D	91.925	161	13	0	2770	2930	380842507	380842347	2.940000e-55	226.0
9	TraesCS5D01G452400	chr2B	90.826	1962	164	11	824	2775	548520565	548522520	0.000000e+00	2612.0
10	TraesCS5D01G452400	chr2B	91.817	1161	94	1	1616	2775	302915891	302914731	0.000000e+00	1616.0
11	TraesCS5D01G452400	chr1B	89.590	1950	158	24	822	2760	441989828	441987913	0.000000e+00	2435.0
12	TraesCS5D01G452400	chr1B	92.647	136	10	0	2624	2759	441802262	441802127	2.300000e-46	196.0
13	TraesCS5D01G452400	chr5B	94.364	1455	73	5	743	2190	621781655	621783107	0.000000e+00	2224.0
14	TraesCS5D01G452400	chr5B	94.610	705	14	5	66	750	621780708	621781408	0.000000e+00	1070.0
15	TraesCS5D01G452400	chr5B	95.868	484	19	1	1	484	621599437	621599919	0.000000e+00	782.0
16	TraesCS5D01G452400	chr5B	91.534	189	16	0	541	729	621600046	621600234	8.050000e-66	261.0
17	TraesCS5D01G452400	chr5B	92.903	155	10	1	2777	2930	621793978	621794132	1.060000e-54	224.0
18	TraesCS5D01G452400	chr5B	93.750	144	9	0	2632	2775	621793798	621793941	1.770000e-52	217.0
19	TraesCS5D01G452400	chr5B	94.203	69	4	0	408	476	621596372	621596440	3.990000e-19	106.0
20	TraesCS5D01G452400	chr5B	97.222	36	1	0	1	36	621780678	621780713	8.770000e-06	62.1
21	TraesCS5D01G452400	chr1D	83.265	1697	261	20	826	2510	248221047	248222732	0.000000e+00	1539.0
22	TraesCS5D01G452400	chr7A	82.523	1625	251	27	991	2595	229809612	229811223	0.000000e+00	1397.0
23	TraesCS5D01G452400	chr2A	81.633	147	25	2	537	682	175388484	175388339	1.430000e-23	121.0
24	TraesCS5D01G452400	chr7D	89.189	74	5	3	857	928	139647506	139647578	4.020000e-14	89.8
25	TraesCS5D01G452400	chr4D	93.478	46	0	2	851	895	395061080	395061123	6.780000e-07	65.8
26	TraesCS5D01G452400	chr5A	85.484	62	7	2	862	923	91523165	91523224	2.440000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G452400	chr5D	500385448	500388377	2929	False	1842.6	5411	100.000000	1	2930	3	chr5D.!!$F1	2929
1	TraesCS5D01G452400	chr2D	118320314	118322463	2149	False	1654.0	3077	93.823500	822	2930	2	chr2D.!!$F1	2108
2	TraesCS5D01G452400	chr3D	283673217	283674995	1778	True	1738.0	1738	84.465000	818	2595	1	chr3D.!!$R1	1777
3	TraesCS5D01G452400	chr3D	380842347	380844483	2136	True	1610.0	2994	93.193500	833	2930	2	chr3D.!!$R2	2097
4	TraesCS5D01G452400	chr3D	376692277	376693944	1667	False	1439.0	1439	82.409000	851	2510	1	chr3D.!!$F1	1659
5	TraesCS5D01G452400	chr2B	548520565	548522520	1955	False	2612.0	2612	90.826000	824	2775	1	chr2B.!!$F1	1951
6	TraesCS5D01G452400	chr2B	302914731	302915891	1160	True	1616.0	1616	91.817000	1616	2775	1	chr2B.!!$R1	1159
7	TraesCS5D01G452400	chr1B	441987913	441989828	1915	True	2435.0	2435	89.590000	822	2760	1	chr1B.!!$R2	1938
8	TraesCS5D01G452400	chr5B	621780678	621783107	2429	False	1118.7	2224	95.398667	1	2190	3	chr5B.!!$F2	2189
9	TraesCS5D01G452400	chr5B	621596372	621600234	3862	False	383.0	782	93.868333	1	729	3	chr5B.!!$F1	728
10	TraesCS5D01G452400	chr1D	248221047	248222732	1685	False	1539.0	1539	83.265000	826	2510	1	chr1D.!!$F1	1684
11	TraesCS5D01G452400	chr7A	229809612	229811223	1611	False	1397.0	1397	82.523000	991	2595	1	chr7A.!!$F1	1604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
64	3165	0.107459	TGCATGCTGGGCGTATTACA	60.107	50.0	20.33	0.0	0.00	2.41	F
815	4243	0.877071	AATTGCACGAACTGCCTCTG	59.123	50.0	0.00	0.0	46.51	3.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1341	4786	1.283793	CAGCGGTGGAAAGTTGCAG	59.716	57.895	6.74	0.0	0.00	4.41	R
2613	6093	0.105039	CTACACCTGCCCGGATCTTC	59.895	60.000	0.73	0.0	36.31	2.87	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	3133	1.455786	CAACAATTCGCGTCGTCTTCT	59.544	47.619	5.77	0.00	0.00	2.85
33	3134	2.624316	ACAATTCGCGTCGTCTTCTA	57.376	45.000	5.77	0.00	0.00	2.10
34	3135	3.146618	ACAATTCGCGTCGTCTTCTAT	57.853	42.857	5.77	0.00	0.00	1.98
35	3136	3.106672	ACAATTCGCGTCGTCTTCTATC	58.893	45.455	5.77	0.00	0.00	2.08
36	3137	3.105937	CAATTCGCGTCGTCTTCTATCA	58.894	45.455	5.77	0.00	0.00	2.15
37	3138	2.453650	TTCGCGTCGTCTTCTATCAG	57.546	50.000	5.77	0.00	0.00	2.90
38	3139	1.648504	TCGCGTCGTCTTCTATCAGA	58.351	50.000	5.77	0.00	0.00	3.27
39	3140	1.593469	TCGCGTCGTCTTCTATCAGAG	59.407	52.381	5.77	0.00	0.00	3.35
40	3141	1.328069	CGCGTCGTCTTCTATCAGAGT	59.672	52.381	0.00	0.00	0.00	3.24
41	3142	2.223066	CGCGTCGTCTTCTATCAGAGTT	60.223	50.000	0.00	0.00	0.00	3.01
42	3143	3.102276	GCGTCGTCTTCTATCAGAGTTG	58.898	50.000	0.00	0.00	0.00	3.16
43	3144	3.426426	GCGTCGTCTTCTATCAGAGTTGT	60.426	47.826	0.00	0.00	0.00	3.32
44	3145	4.724303	CGTCGTCTTCTATCAGAGTTGTT	58.276	43.478	0.00	0.00	0.00	2.83
45	3146	5.154932	CGTCGTCTTCTATCAGAGTTGTTT	58.845	41.667	0.00	0.00	0.00	2.83
46	3147	5.059832	CGTCGTCTTCTATCAGAGTTGTTTG	59.940	44.000	0.00	0.00	0.00	2.93
47	3148	4.923871	TCGTCTTCTATCAGAGTTGTTTGC	59.076	41.667	0.00	0.00	0.00	3.68
48	3149	4.686091	CGTCTTCTATCAGAGTTGTTTGCA	59.314	41.667	0.00	0.00	0.00	4.08
49	3150	5.349817	CGTCTTCTATCAGAGTTGTTTGCAT	59.650	40.000	0.00	0.00	0.00	3.96
50	3151	6.541086	GTCTTCTATCAGAGTTGTTTGCATG	58.459	40.000	0.00	0.00	0.00	4.06
51	3152	4.952262	TCTATCAGAGTTGTTTGCATGC	57.048	40.909	11.82	11.82	0.00	4.06
52	3153	4.582869	TCTATCAGAGTTGTTTGCATGCT	58.417	39.130	20.33	0.00	0.00	3.79
53	3154	3.570926	ATCAGAGTTGTTTGCATGCTG	57.429	42.857	20.33	5.31	0.00	4.41
54	3155	1.610038	TCAGAGTTGTTTGCATGCTGG	59.390	47.619	20.33	0.00	0.00	4.85
55	3156	0.963962	AGAGTTGTTTGCATGCTGGG	59.036	50.000	20.33	0.00	0.00	4.45
56	3157	0.668401	GAGTTGTTTGCATGCTGGGC	60.668	55.000	20.33	7.17	0.00	5.36
57	3158	2.023223	GTTGTTTGCATGCTGGGCG	61.023	57.895	20.33	0.00	0.00	6.13
58	3159	2.497173	TTGTTTGCATGCTGGGCGT	61.497	52.632	20.33	0.00	0.00	5.68
59	3160	1.175347	TTGTTTGCATGCTGGGCGTA	61.175	50.000	20.33	0.00	0.00	4.42
60	3161	0.964860	TGTTTGCATGCTGGGCGTAT	60.965	50.000	20.33	0.00	0.00	3.06
61	3162	0.173255	GTTTGCATGCTGGGCGTATT	59.827	50.000	20.33	0.00	0.00	1.89
62	3163	1.403679	GTTTGCATGCTGGGCGTATTA	59.596	47.619	20.33	0.00	0.00	0.98
63	3164	1.021202	TTGCATGCTGGGCGTATTAC	58.979	50.000	20.33	0.00	0.00	1.89
64	3165	0.107459	TGCATGCTGGGCGTATTACA	60.107	50.000	20.33	0.00	0.00	2.41
65	3166	1.238439	GCATGCTGGGCGTATTACAT	58.762	50.000	11.37	0.00	0.00	2.29
66	3167	1.197721	GCATGCTGGGCGTATTACATC	59.802	52.381	11.37	0.00	0.00	3.06
182	3283	1.565759	TGAGCTATTTGGCCTCCACAT	59.434	47.619	3.32	0.00	30.78	3.21
276	3377	2.499685	CCCGCTGGCACCTACTAC	59.500	66.667	0.00	0.00	0.00	2.73
277	3378	2.058595	CCCGCTGGCACCTACTACT	61.059	63.158	0.00	0.00	0.00	2.57
278	3379	1.614241	CCCGCTGGCACCTACTACTT	61.614	60.000	0.00	0.00	0.00	2.24
519	3643	7.619965	TCATGACCAGACATAATTCACAGTTA	58.380	34.615	0.00	0.00	0.00	2.24
542	3716	3.120792	CAGCATGCATACAAAGCCAATC	58.879	45.455	21.98	0.00	32.89	2.67
738	3912	1.883084	CAGTGTTCTATCCGGCGGC	60.883	63.158	23.83	6.54	0.00	6.53
815	4243	0.877071	AATTGCACGAACTGCCTCTG	59.123	50.000	0.00	0.00	46.51	3.35
1341	4786	4.754667	GGTCACCGCCGGGAAGAC	62.755	72.222	8.57	12.42	39.49	3.01
1392	4837	1.340114	GGTCTGGAGGGTCACATTTCC	60.340	57.143	0.00	0.00	0.00	3.13
1943	5389	2.919859	CAGAGTGATGCGTACTCAAGTG	59.080	50.000	14.63	3.88	45.41	3.16
1944	5390	2.558795	AGAGTGATGCGTACTCAAGTGT	59.441	45.455	14.63	0.00	45.41	3.55
2373	5823	3.041351	GTGCACGTGATCACCGCA	61.041	61.111	25.82	25.82	34.93	5.69
2429	5879	1.073722	CAAGCAGGCTCTGTTGGGA	59.926	57.895	0.00	0.00	33.43	4.37
2543	5996	1.381872	GACTAGCCAGGGAGGAGCA	60.382	63.158	0.00	0.00	41.22	4.26
2595	6075	1.134280	AGATTGCCACAGAAGATCCGG	60.134	52.381	0.00	0.00	0.00	5.14
2596	6076	0.620556	ATTGCCACAGAAGATCCGGT	59.379	50.000	0.00	0.00	0.00	5.28
2597	6077	0.321564	TTGCCACAGAAGATCCGGTG	60.322	55.000	0.00	0.00	0.00	4.94
2598	6078	4.941609	CCACAGAAGATCCGGTGG	57.058	61.111	0.00	6.84	44.17	4.61
2599	6079	1.983224	CCACAGAAGATCCGGTGGT	59.017	57.895	0.00	0.00	44.47	4.16
2600	6080	0.391661	CCACAGAAGATCCGGTGGTG	60.392	60.000	0.00	4.71	44.47	4.17
2601	6081	1.021390	CACAGAAGATCCGGTGGTGC	61.021	60.000	0.00	0.00	0.00	5.01
2602	6082	1.296392	CAGAAGATCCGGTGGTGCA	59.704	57.895	0.00	0.00	0.00	4.57
2603	6083	0.742281	CAGAAGATCCGGTGGTGCAG	60.742	60.000	0.00	0.00	0.00	4.41
2604	6084	0.904865	AGAAGATCCGGTGGTGCAGA	60.905	55.000	0.00	0.00	0.00	4.26
2605	6085	0.179000	GAAGATCCGGTGGTGCAGAT	59.821	55.000	0.00	0.00	0.00	2.90
2606	6086	0.620556	AAGATCCGGTGGTGCAGATT	59.379	50.000	0.00	0.00	0.00	2.40
2607	6087	0.107508	AGATCCGGTGGTGCAGATTG	60.108	55.000	0.00	0.00	0.00	2.67
2608	6088	1.718757	GATCCGGTGGTGCAGATTGC	61.719	60.000	0.00	0.00	45.29	3.56
2609	6089	3.443045	CCGGTGGTGCAGATTGCC	61.443	66.667	0.00	0.00	44.23	4.52
2610	6090	2.672651	CGGTGGTGCAGATTGCCA	60.673	61.111	0.00	0.00	44.23	4.92
2613	6093	4.084265	TGGTGCAGATTGCCACAG	57.916	55.556	0.00	0.00	44.23	3.66
2614	6094	1.455412	TGGTGCAGATTGCCACAGA	59.545	52.632	0.00	0.00	44.23	3.41
2615	6095	0.178995	TGGTGCAGATTGCCACAGAA	60.179	50.000	0.00	0.00	44.23	3.02
2616	6096	0.524862	GGTGCAGATTGCCACAGAAG	59.475	55.000	0.00	0.00	44.23	2.85
2617	6097	1.527034	GTGCAGATTGCCACAGAAGA	58.473	50.000	0.00	0.00	44.23	2.87
2618	6098	2.089980	GTGCAGATTGCCACAGAAGAT	58.910	47.619	0.00	0.00	44.23	2.40
2619	6099	2.097142	GTGCAGATTGCCACAGAAGATC	59.903	50.000	0.00	0.00	44.23	2.75
2620	6100	1.674962	GCAGATTGCCACAGAAGATCC	59.325	52.381	0.00	0.00	37.42	3.36
2621	6101	1.938577	CAGATTGCCACAGAAGATCCG	59.061	52.381	0.00	0.00	0.00	4.18
2641	6121	2.978824	CAGGTGTAGTGGGACCCG	59.021	66.667	5.91	0.00	32.03	5.28
2646	6126	1.079621	TGTAGTGGGACCCGACCAT	59.920	57.895	5.91	0.00	40.70	3.55
2805	6320	4.351054	CAGGAGGCGGCTTTGGGT	62.351	66.667	14.76	0.00	0.00	4.51
2816	6332	2.757868	CGGCTTTGGGTATTCAAATCCA	59.242	45.455	9.76	0.00	40.79	3.41
2832	6348	4.776322	CAGCCATCCCGTCCGCAA	62.776	66.667	0.00	0.00	0.00	4.85
2848	6364	2.046285	CAACTGATTCGGTGGGGGC	61.046	63.158	0.00	0.00	0.00	5.80
2867	6383	2.274104	GCCAACGCCCAATCCCTA	59.726	61.111	0.00	0.00	0.00	3.53
2871	6387	0.468226	CAACGCCCAATCCCTAGCTA	59.532	55.000	0.00	0.00	0.00	3.32
2878	6394	1.347707	CCAATCCCTAGCTATTGCCGA	59.652	52.381	0.00	0.00	40.80	5.54
2899	6415	2.936032	GGAGGCCCCACTGGTTCT	60.936	66.667	0.00	0.00	36.04	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	3133	3.441222	CCAGCATGCAAACAACTCTGATA	59.559	43.478	21.98	0.00	31.97	2.15
33	3134	2.230508	CCAGCATGCAAACAACTCTGAT	59.769	45.455	21.98	0.00	31.97	2.90
34	3135	1.610038	CCAGCATGCAAACAACTCTGA	59.390	47.619	21.98	0.00	31.97	3.27
35	3136	1.336517	CCCAGCATGCAAACAACTCTG	60.337	52.381	21.98	5.61	31.97	3.35
36	3137	0.963962	CCCAGCATGCAAACAACTCT	59.036	50.000	21.98	0.00	31.97	3.24
37	3138	0.668401	GCCCAGCATGCAAACAACTC	60.668	55.000	21.98	0.00	31.97	3.01
38	3139	1.368579	GCCCAGCATGCAAACAACT	59.631	52.632	21.98	0.00	31.97	3.16
39	3140	2.023223	CGCCCAGCATGCAAACAAC	61.023	57.895	21.98	2.90	31.97	3.32
40	3141	1.175347	TACGCCCAGCATGCAAACAA	61.175	50.000	21.98	0.00	31.97	2.83
41	3142	0.964860	ATACGCCCAGCATGCAAACA	60.965	50.000	21.98	0.00	31.97	2.83
42	3143	0.173255	AATACGCCCAGCATGCAAAC	59.827	50.000	21.98	5.19	31.97	2.93
43	3144	1.403679	GTAATACGCCCAGCATGCAAA	59.596	47.619	21.98	0.00	31.97	3.68
44	3145	1.021202	GTAATACGCCCAGCATGCAA	58.979	50.000	21.98	0.00	31.97	4.08
45	3146	0.107459	TGTAATACGCCCAGCATGCA	60.107	50.000	21.98	0.00	31.97	3.96
46	3147	1.197721	GATGTAATACGCCCAGCATGC	59.802	52.381	10.51	10.51	31.97	4.06
47	3148	2.493035	TGATGTAATACGCCCAGCATG	58.507	47.619	0.00	0.00	0.00	4.06
48	3149	2.928801	TGATGTAATACGCCCAGCAT	57.071	45.000	0.00	0.00	0.00	3.79
49	3150	2.700722	TTGATGTAATACGCCCAGCA	57.299	45.000	0.00	0.00	0.00	4.41
50	3151	3.403038	AGATTGATGTAATACGCCCAGC	58.597	45.455	0.00	0.00	0.00	4.85
51	3152	3.997021	GGAGATTGATGTAATACGCCCAG	59.003	47.826	0.00	0.00	0.00	4.45
52	3153	3.646162	AGGAGATTGATGTAATACGCCCA	59.354	43.478	0.00	0.00	0.00	5.36
53	3154	3.997021	CAGGAGATTGATGTAATACGCCC	59.003	47.826	0.00	0.00	0.00	6.13
54	3155	3.433615	GCAGGAGATTGATGTAATACGCC	59.566	47.826	0.00	0.00	0.00	5.68
55	3156	4.058124	TGCAGGAGATTGATGTAATACGC	58.942	43.478	0.00	0.00	0.00	4.42
56	3157	4.151335	GCTGCAGGAGATTGATGTAATACG	59.849	45.833	17.12	0.00	0.00	3.06
57	3158	5.178996	CAGCTGCAGGAGATTGATGTAATAC	59.821	44.000	17.12	0.00	0.00	1.89
58	3159	5.303165	CAGCTGCAGGAGATTGATGTAATA	58.697	41.667	17.12	0.00	0.00	0.98
59	3160	4.135306	CAGCTGCAGGAGATTGATGTAAT	58.865	43.478	17.12	0.00	0.00	1.89
60	3161	3.538591	CAGCTGCAGGAGATTGATGTAA	58.461	45.455	17.12	0.00	0.00	2.41
61	3162	2.158856	CCAGCTGCAGGAGATTGATGTA	60.159	50.000	17.12	0.00	0.00	2.29
62	3163	1.408405	CCAGCTGCAGGAGATTGATGT	60.408	52.381	17.12	0.00	0.00	3.06
63	3164	1.134189	TCCAGCTGCAGGAGATTGATG	60.134	52.381	17.12	0.00	0.00	3.07
64	3165	1.210538	TCCAGCTGCAGGAGATTGAT	58.789	50.000	17.12	0.00	0.00	2.57
65	3166	2.687781	TCCAGCTGCAGGAGATTGA	58.312	52.632	17.12	0.00	0.00	2.57
276	3377	1.219393	GGAGTCGCCCAAGGAGAAG	59.781	63.158	0.00	0.00	32.47	2.85
277	3378	1.229209	AGGAGTCGCCCAAGGAGAA	60.229	57.895	0.00	0.00	32.47	2.87
278	3379	1.984570	CAGGAGTCGCCCAAGGAGA	60.985	63.158	0.00	0.00	37.37	3.71
519	3643	2.380941	TGGCTTTGTATGCATGCTGAT	58.619	42.857	20.33	7.54	0.00	2.90
542	3716	1.876714	GCATGCGGCAATCAAGCTG	60.877	57.895	6.82	0.00	43.97	4.24
554	3728	1.136147	GAGCCTGTCTTTGCATGCG	59.864	57.895	14.09	0.00	35.61	4.73
738	3912	1.132643	AGCTTACGTCTAAGGAGTGCG	59.867	52.381	0.00	0.00	31.37	5.34
815	4243	3.611674	GCTCGCTAGGGGAGGAGC	61.612	72.222	6.99	4.77	41.88	4.70
1341	4786	1.283793	CAGCGGTGGAAAGTTGCAG	59.716	57.895	6.74	0.00	0.00	4.41
1480	4925	4.899239	GAGTCCGGCCTGCATCGG	62.899	72.222	14.60	14.60	46.89	4.18
1514	4959	4.208686	CGGTCTGCCTAGTCGCCC	62.209	72.222	0.00	0.00	0.00	6.13
2514	5967	2.352032	GGCTAGTCCCTGTCGCAGT	61.352	63.158	6.19	0.00	0.00	4.40
2600	6080	1.674962	GGATCTTCTGTGGCAATCTGC	59.325	52.381	0.00	0.00	44.08	4.26
2601	6081	1.938577	CGGATCTTCTGTGGCAATCTG	59.061	52.381	0.00	0.00	0.00	2.90
2602	6082	1.134280	CCGGATCTTCTGTGGCAATCT	60.134	52.381	0.00	0.00	0.00	2.40
2603	6083	1.303309	CCGGATCTTCTGTGGCAATC	58.697	55.000	0.00	0.00	0.00	2.67
2604	6084	0.107017	CCCGGATCTTCTGTGGCAAT	60.107	55.000	0.73	0.00	0.00	3.56
2605	6085	1.299648	CCCGGATCTTCTGTGGCAA	59.700	57.895	0.73	0.00	0.00	4.52
2606	6086	2.989639	CCCGGATCTTCTGTGGCA	59.010	61.111	0.73	0.00	0.00	4.92
2607	6087	2.514824	GCCCGGATCTTCTGTGGC	60.515	66.667	0.73	0.00	33.91	5.01
2608	6088	1.153289	CTGCCCGGATCTTCTGTGG	60.153	63.158	0.73	0.00	0.00	4.17
2609	6089	1.153289	CCTGCCCGGATCTTCTGTG	60.153	63.158	0.73	0.00	33.16	3.66
2610	6090	1.613630	ACCTGCCCGGATCTTCTGT	60.614	57.895	0.73	0.00	36.31	3.41
2611	6091	1.153289	CACCTGCCCGGATCTTCTG	60.153	63.158	0.73	0.00	36.31	3.02
2612	6092	0.325296	TACACCTGCCCGGATCTTCT	60.325	55.000	0.73	0.00	36.31	2.85
2613	6093	0.105039	CTACACCTGCCCGGATCTTC	59.895	60.000	0.73	0.00	36.31	2.87
2614	6094	0.617820	ACTACACCTGCCCGGATCTT	60.618	55.000	0.73	0.00	36.31	2.40
2615	6095	1.001760	ACTACACCTGCCCGGATCT	59.998	57.895	0.73	0.00	36.31	2.75
2616	6096	1.144057	CACTACACCTGCCCGGATC	59.856	63.158	0.73	0.00	36.31	3.36
2617	6097	2.367202	CCACTACACCTGCCCGGAT	61.367	63.158	0.73	0.00	36.31	4.18
2618	6098	3.000819	CCACTACACCTGCCCGGA	61.001	66.667	0.73	0.00	36.31	5.14
2619	6099	4.096003	CCCACTACACCTGCCCGG	62.096	72.222	0.00	0.00	39.35	5.73
2620	6100	3.000819	TCCCACTACACCTGCCCG	61.001	66.667	0.00	0.00	0.00	6.13
2621	6101	2.669240	GTCCCACTACACCTGCCC	59.331	66.667	0.00	0.00	0.00	5.36
2695	6175	2.225117	ACTTGGTCAAAAGCCTGGCTAT	60.225	45.455	23.69	11.54	38.25	2.97
2805	6320	2.174639	ACGGGATGGCTGGATTTGAATA	59.825	45.455	0.00	0.00	0.00	1.75
2816	6332	4.778143	GTTGCGGACGGGATGGCT	62.778	66.667	0.00	0.00	0.00	4.75
2832	6348	3.728373	GGCCCCCACCGAATCAGT	61.728	66.667	0.00	0.00	0.00	3.41
2867	6383	1.118356	CCTCCTCCTCGGCAATAGCT	61.118	60.000	0.00	0.00	41.70	3.32
2878	6394	4.748798	CCAGTGGGGCCTCCTCCT	62.749	72.222	0.00	0.00	36.20	3.69
2899	6415	1.171549	TGCGATTTTGTCTGGCAGCA	61.172	50.000	10.34	8.61	0.00	4.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.