Multiple sequence alignment - TraesCS5D01G451800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G451800 chr5D 100.000 5242 0 0 1 5242 499872170 499866929 0.000000e+00 9681.0
1 TraesCS5D01G451800 chr5D 88.565 446 43 8 4529 4970 18337349 18337790 7.730000e-148 534.0
2 TraesCS5D01G451800 chr5D 86.519 497 52 13 4489 4975 543749454 543749945 2.780000e-147 532.0
3 TraesCS5D01G451800 chr5D 87.140 451 49 9 4529 4975 84920220 84919775 2.180000e-138 503.0
4 TraesCS5D01G451800 chr5D 89.773 264 24 3 4981 5242 543749997 543750259 8.410000e-88 335.0
5 TraesCS5D01G451800 chr5B 92.749 2055 107 21 1713 3738 621261686 621259645 0.000000e+00 2931.0
6 TraesCS5D01G451800 chr5B 90.983 743 39 15 1 719 621263336 621262598 0.000000e+00 976.0
7 TraesCS5D01G451800 chr5B 77.840 537 67 32 836 1344 621262533 621262021 8.590000e-73 285.0
8 TraesCS5D01G451800 chr5B 83.750 80 11 2 772 851 136413156 136413233 2.020000e-09 75.0
9 TraesCS5D01G451800 chr5B 93.750 48 1 2 721 767 699979072 699979026 2.620000e-08 71.3
10 TraesCS5D01G451800 chr5A 90.755 2185 139 27 2151 4304 624211815 624209663 0.000000e+00 2857.0
11 TraesCS5D01G451800 chr5A 87.184 1662 117 42 1 1612 624213965 624212350 0.000000e+00 1801.0
12 TraesCS5D01G451800 chr5A 92.400 500 33 2 1651 2147 624212351 624211854 0.000000e+00 708.0
13 TraesCS5D01G451800 chr7D 89.984 639 59 5 4569 5204 503694920 503695556 0.000000e+00 821.0
14 TraesCS5D01G451800 chr7D 92.453 265 19 1 4979 5242 564179769 564179505 1.380000e-100 377.0
15 TraesCS5D01G451800 chr7D 90.123 81 8 0 3096 3176 511117163 511117083 7.180000e-19 106.0
16 TraesCS5D01G451800 chr7D 86.301 73 6 3 771 843 139819000 139819068 5.630000e-10 76.8
17 TraesCS5D01G451800 chr7D 85.135 74 7 2 772 845 454519331 454519400 7.280000e-09 73.1
18 TraesCS5D01G451800 chr3D 87.991 458 44 11 4525 4975 51089277 51088824 1.000000e-146 531.0
19 TraesCS5D01G451800 chr3D 89.773 264 25 1 4979 5242 562640416 562640677 2.340000e-88 337.0
20 TraesCS5D01G451800 chr3D 88.816 152 17 0 4452 4603 380963438 380963287 2.490000e-43 187.0
21 TraesCS5D01G451800 chr3D 88.194 144 16 1 4452 4594 603989781 603989638 2.510000e-38 171.0
22 TraesCS5D01G451800 chr3D 84.706 85 7 3 762 843 152486645 152486726 4.350000e-11 80.5
23 TraesCS5D01G451800 chr4D 87.805 451 48 6 4529 4975 238029959 238029512 6.020000e-144 521.0
24 TraesCS5D01G451800 chr4D 91.985 262 20 1 4979 5240 10392166 10391906 2.980000e-97 366.0
25 TraesCS5D01G451800 chr4D 100.000 36 0 0 813 848 27383585 27383620 3.390000e-07 67.6
26 TraesCS5D01G451800 chr3A 88.046 435 44 7 4529 4959 91485660 91486090 4.680000e-140 508.0
27 TraesCS5D01G451800 chr3A 93.750 48 1 2 721 767 56783573 56783619 2.620000e-08 71.3
28 TraesCS5D01G451800 chr3A 96.875 32 1 0 721 752 68867163 68867194 3.000000e-03 54.7
29 TraesCS5D01G451800 chr1A 87.586 435 46 7 4529 4959 405023913 405024343 1.010000e-136 497.0
30 TraesCS5D01G451800 chr4A 84.756 492 63 12 4492 4975 646110984 646110497 2.840000e-132 483.0
31 TraesCS5D01G451800 chr6A 92.977 299 19 2 4362 4659 249533853 249534150 8.060000e-118 435.0
32 TraesCS5D01G451800 chr6D 90.970 299 25 2 4362 4659 185226022 185226319 8.180000e-108 401.0
33 TraesCS5D01G451800 chr6D 90.566 265 21 4 4979 5241 59191110 59190848 1.080000e-91 348.0
34 TraesCS5D01G451800 chr1D 80.180 555 73 22 4711 5242 211711366 211710826 1.070000e-101 381.0
35 TraesCS5D01G451800 chr1D 92.366 262 19 1 4979 5240 487590214 487589954 6.410000e-99 372.0
36 TraesCS5D01G451800 chr2B 91.603 262 22 0 4979 5240 755995404 755995143 3.860000e-96 363.0
37 TraesCS5D01G451800 chr2B 84.932 73 8 3 772 843 796537064 796537134 2.620000e-08 71.3
38 TraesCS5D01G451800 chr2B 83.784 74 7 3 775 843 792996842 792996769 1.220000e-06 65.8
39 TraesCS5D01G451800 chrUn 83.682 239 33 2 2612 2850 317044685 317044453 2.460000e-53 220.0
40 TraesCS5D01G451800 chr3B 83.682 239 33 2 2612 2850 510277799 510278031 2.460000e-53 220.0
41 TraesCS5D01G451800 chr3B 95.833 48 0 2 721 767 706856472 706856426 5.630000e-10 76.8
42 TraesCS5D01G451800 chr3B 91.667 48 2 2 721 767 747527265 747527311 1.220000e-06 65.8
43 TraesCS5D01G451800 chr3B 82.192 73 9 3 773 843 31865896 31865966 5.670000e-05 60.2
44 TraesCS5D01G451800 chr3B 83.871 62 5 4 788 846 52774010 52773951 3.000000e-03 54.7
45 TraesCS5D01G451800 chr6B 83.069 189 27 3 2604 2792 266872813 266872996 3.250000e-37 167.0
46 TraesCS5D01G451800 chr6B 93.750 48 1 2 721 767 34135372 34135326 2.620000e-08 71.3
47 TraesCS5D01G451800 chr7B 94.872 39 2 0 767 805 723957858 723957820 1.580000e-05 62.1
48 TraesCS5D01G451800 chr7B 96.970 33 0 1 742 773 164500714 164500746 3.000000e-03 54.7
49 TraesCS5D01G451800 chr2A 89.583 48 3 2 721 767 52057189 52057143 5.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G451800 chr5D 499866929 499872170 5241 True 9681.000000 9681 100.000000 1 5242 1 chr5D.!!$R2 5241
1 TraesCS5D01G451800 chr5D 543749454 543750259 805 False 433.500000 532 88.146000 4489 5242 2 chr5D.!!$F2 753
2 TraesCS5D01G451800 chr5B 621259645 621263336 3691 True 1397.333333 2931 87.190667 1 3738 3 chr5B.!!$R2 3737
3 TraesCS5D01G451800 chr5A 624209663 624213965 4302 True 1788.666667 2857 90.113000 1 4304 3 chr5A.!!$R1 4303
4 TraesCS5D01G451800 chr7D 503694920 503695556 636 False 821.000000 821 89.984000 4569 5204 1 chr7D.!!$F3 635
5 TraesCS5D01G451800 chr1D 211710826 211711366 540 True 381.000000 381 80.180000 4711 5242 1 chr1D.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 564 0.262580 CCCATGTTCCATGACCCCAT 59.737 55.0 5.80 0.0 0.00 4.00 F
1250 1381 0.033504 TCGCTGTCCCTTTGACTGAC 59.966 55.0 3.76 0.0 44.75 3.51 F
1251 1382 0.034059 CGCTGTCCCTTTGACTGACT 59.966 55.0 3.76 0.0 44.75 3.41 F
1680 1845 0.179018 CGGTCCTTCCATCCCATTCC 60.179 60.0 0.00 0.0 35.57 3.01 F
1681 1846 0.186143 GGTCCTTCCATCCCATTCCC 59.814 60.0 0.00 0.0 35.97 3.97 F
1684 1849 0.186873 CCTTCCATCCCATTCCCAGG 59.813 60.0 0.00 0.0 0.00 4.45 F
1687 1852 0.253583 TCCATCCCATTCCCAGGTGA 60.254 55.0 0.00 0.0 0.00 4.02 F
2302 2533 0.371645 GCGTTCTTCAATCCGAGCTG 59.628 55.0 0.00 0.0 0.00 4.24 F
3986 4246 0.247736 AGTGATGAGGCTCGTTGACC 59.752 55.0 11.18 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1770 0.114954 TGCTTCTTGCCTGGGGAAAT 59.885 50.000 0.00 0.00 42.00 2.17 R
3130 3377 0.244994 GCATATGGTCGCGGATCTCT 59.755 55.000 6.13 0.00 0.00 3.10 R
3197 3450 2.589159 GAATTCCTCTCCGGCCGC 60.589 66.667 22.85 0.00 0.00 6.53 R
3542 3798 1.075226 CCCCGATCTCCTCCTCCAA 60.075 63.158 0.00 0.00 0.00 3.53 R
3595 3851 2.283894 TGCTCCAGGAAGCTCCGA 60.284 61.111 10.99 0.00 42.75 4.55 R
3697 3953 2.158696 AGCCATGGTATCTTCTCCAAGC 60.159 50.000 14.67 0.00 37.27 4.01 R
3706 3962 3.713764 ACTTTCAGCTAGCCATGGTATCT 59.286 43.478 14.67 4.49 0.00 1.98 R
4019 4279 0.385390 CAAACCAACCAGCACCAGTC 59.615 55.000 0.00 0.00 0.00 3.51 R
5070 5394 5.007034 TCATGGCAAATTTAGTTCTCGGAA 58.993 37.500 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.224370 ACACACCCGATGGACTAACTTTAT 59.776 41.667 0.00 0.00 34.81 1.40
303 308 2.435586 CGTGAGCTGAAGGCCCTG 60.436 66.667 0.00 0.00 43.05 4.45
316 321 1.599576 GCCCTGTGAGAAGGAGGAC 59.400 63.158 0.00 0.00 40.02 3.85
376 381 2.036862 ACCCTAACTCAACGTTGTCTCC 59.963 50.000 26.47 0.00 37.05 3.71
544 563 0.848648 TCCCATGTTCCATGACCCCA 60.849 55.000 5.80 0.00 0.00 4.96
545 564 0.262580 CCCATGTTCCATGACCCCAT 59.737 55.000 5.80 0.00 0.00 4.00
592 615 9.689976 TGTTTGTATTATTGTCATGGTTTGAAG 57.310 29.630 0.00 0.00 35.70 3.02
605 628 8.613830 GTCATGGTTTGAAGTTTGCAAATTTGC 61.614 37.037 31.67 31.67 44.67 3.68
653 676 1.547372 GCCACCATGATAATGGATGGC 59.453 52.381 26.88 26.88 44.39 4.40
669 692 3.245052 GGATGGCCCAGCTTTACATCTAT 60.245 47.826 0.00 0.00 38.33 1.98
673 696 5.130350 TGGCCCAGCTTTACATCTATAAAC 58.870 41.667 0.00 0.00 0.00 2.01
691 714 9.565090 TCTATAAACATGAAAGCATAAGCATCT 57.435 29.630 0.00 0.00 45.49 2.90
703 726 5.286295 GCATAAGCATCTCCATGACATGGT 61.286 45.833 29.44 14.10 45.25 3.55
723 746 3.436035 GGTCACCCCTGGGAAATAATACC 60.436 52.174 16.20 7.84 38.96 2.73
730 753 3.060611 CTGGGAAATAATACCCCCTCCA 58.939 50.000 0.00 0.00 45.01 3.86
734 757 3.011369 GGAAATAATACCCCCTCCATCCC 59.989 52.174 0.00 0.00 0.00 3.85
735 758 3.393782 AATAATACCCCCTCCATCCCA 57.606 47.619 0.00 0.00 0.00 4.37
736 759 3.621173 ATAATACCCCCTCCATCCCAT 57.379 47.619 0.00 0.00 0.00 4.00
737 760 4.746206 ATAATACCCCCTCCATCCCATA 57.254 45.455 0.00 0.00 0.00 2.74
738 761 3.393782 AATACCCCCTCCATCCCATAA 57.606 47.619 0.00 0.00 0.00 1.90
739 762 3.621173 ATACCCCCTCCATCCCATAAT 57.379 47.619 0.00 0.00 0.00 1.28
740 763 4.746206 ATACCCCCTCCATCCCATAATA 57.254 45.455 0.00 0.00 0.00 0.98
741 764 3.393782 ACCCCCTCCATCCCATAATAA 57.606 47.619 0.00 0.00 0.00 1.40
787 810 7.093421 ACACTAAATTTAGTACTCCCTCAGTCC 60.093 40.741 26.38 0.00 41.82 3.85
790 813 4.348020 TTTAGTACTCCCTCAGTCCCAT 57.652 45.455 0.00 0.00 36.43 4.00
794 817 5.681494 AGTACTCCCTCAGTCCCATAATA 57.319 43.478 0.00 0.00 36.43 0.98
798 821 7.896496 AGTACTCCCTCAGTCCCATAATATAAG 59.104 40.741 0.00 0.00 36.43 1.73
800 823 6.957020 ACTCCCTCAGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
801 824 5.721960 TCCCTCAGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
802 825 5.485353 CCCTCAGTCCCATAATATAAGAGCA 59.515 44.000 0.00 0.00 0.00 4.26
803 826 6.157645 CCCTCAGTCCCATAATATAAGAGCAT 59.842 42.308 0.00 0.00 0.00 3.79
806 829 8.206126 TCAGTCCCATAATATAAGAGCATTGA 57.794 34.615 0.00 0.00 0.00 2.57
807 830 8.097038 TCAGTCCCATAATATAAGAGCATTGAC 58.903 37.037 0.00 0.00 0.00 3.18
808 831 8.099537 CAGTCCCATAATATAAGAGCATTGACT 58.900 37.037 0.00 0.00 0.00 3.41
809 832 8.099537 AGTCCCATAATATAAGAGCATTGACTG 58.900 37.037 0.00 0.00 0.00 3.51
810 833 7.880195 GTCCCATAATATAAGAGCATTGACTGT 59.120 37.037 0.00 0.00 0.00 3.55
811 834 8.097038 TCCCATAATATAAGAGCATTGACTGTC 58.903 37.037 0.00 0.00 0.00 3.51
879 958 6.018669 CGCCATATTAAAAGTCAGAGAAGGAC 60.019 42.308 0.00 0.00 35.50 3.85
892 978 6.092807 GTCAGAGAAGGACCATTCACATTTAC 59.907 42.308 0.00 0.00 0.00 2.01
1017 1118 2.403252 GACCCGGTGTCAGAAATGAT 57.597 50.000 15.65 0.00 43.85 2.45
1025 1126 6.095440 CCCGGTGTCAGAAATGATAAGAAAAT 59.905 38.462 0.00 0.00 0.00 1.82
1026 1127 7.362920 CCCGGTGTCAGAAATGATAAGAAAATT 60.363 37.037 0.00 0.00 0.00 1.82
1073 1181 8.256605 TGGGACACAATGACATATTTAAATTGG 58.743 33.333 5.91 1.86 33.50 3.16
1078 1186 9.153721 CACAATGACATATTTAAATTGGCAACT 57.846 29.630 17.27 0.00 30.89 3.16
1108 1216 2.092323 GAAAGCCACCACCCTGTTATC 58.908 52.381 0.00 0.00 0.00 1.75
1117 1226 5.359860 CCACCACCCTGTTATCTTTATTTCC 59.640 44.000 0.00 0.00 0.00 3.13
1160 1280 1.001406 CACCTGTCGCCTCTTCTTCTT 59.999 52.381 0.00 0.00 0.00 2.52
1161 1281 1.694696 ACCTGTCGCCTCTTCTTCTTT 59.305 47.619 0.00 0.00 0.00 2.52
1162 1282 2.897969 ACCTGTCGCCTCTTCTTCTTTA 59.102 45.455 0.00 0.00 0.00 1.85
1163 1283 3.515901 ACCTGTCGCCTCTTCTTCTTTAT 59.484 43.478 0.00 0.00 0.00 1.40
1164 1284 4.116238 CCTGTCGCCTCTTCTTCTTTATC 58.884 47.826 0.00 0.00 0.00 1.75
1165 1285 4.142049 CCTGTCGCCTCTTCTTCTTTATCT 60.142 45.833 0.00 0.00 0.00 1.98
1206 1326 4.447138 TCTGGTGTACATTTCCAACCTT 57.553 40.909 0.00 0.00 0.00 3.50
1217 1337 0.770499 TCCAACCTTGCCATGACAGA 59.230 50.000 0.00 0.00 0.00 3.41
1218 1338 1.171308 CCAACCTTGCCATGACAGAG 58.829 55.000 0.00 0.00 0.00 3.35
1220 1340 2.233271 CAACCTTGCCATGACAGAGTT 58.767 47.619 0.00 0.00 0.00 3.01
1222 1342 1.421268 ACCTTGCCATGACAGAGTTCA 59.579 47.619 0.00 0.00 0.00 3.18
1223 1343 2.040813 ACCTTGCCATGACAGAGTTCAT 59.959 45.455 0.00 0.00 36.62 2.57
1249 1380 0.318441 CTCGCTGTCCCTTTGACTGA 59.682 55.000 3.76 0.00 44.75 3.41
1250 1381 0.033504 TCGCTGTCCCTTTGACTGAC 59.966 55.000 3.76 0.00 44.75 3.51
1251 1382 0.034059 CGCTGTCCCTTTGACTGACT 59.966 55.000 3.76 0.00 44.75 3.41
1252 1383 1.517242 GCTGTCCCTTTGACTGACTG 58.483 55.000 3.76 0.00 44.75 3.51
1253 1384 1.879796 GCTGTCCCTTTGACTGACTGG 60.880 57.143 3.76 0.00 44.75 4.00
1255 1386 2.104792 CTGTCCCTTTGACTGACTGGAA 59.895 50.000 0.00 0.00 44.75 3.53
1294 1430 6.483405 AGAAATCTCTCTCAGCCTTCAATTT 58.517 36.000 0.00 0.00 0.00 1.82
1295 1431 6.947158 AGAAATCTCTCTCAGCCTTCAATTTT 59.053 34.615 0.00 0.00 0.00 1.82
1336 1472 1.197036 GTTTCTTGGTAGTTGGCGAGC 59.803 52.381 0.00 0.00 0.00 5.03
1393 1532 1.133513 TCTGGAGGAGATCTGAGCCTC 60.134 57.143 17.06 17.06 45.88 4.70
1402 1541 0.754957 ATCTGAGCCTCCTCCGTGAG 60.755 60.000 0.00 0.00 37.29 3.51
1419 1558 4.974591 CGTGAGGAAGGAAATTTGCTAAG 58.025 43.478 13.01 0.00 0.00 2.18
1423 1562 4.998051 AGGAAGGAAATTTGCTAAGTCCA 58.002 39.130 23.19 0.00 28.76 4.02
1424 1563 4.767409 AGGAAGGAAATTTGCTAAGTCCAC 59.233 41.667 23.19 7.48 28.76 4.02
1426 1565 4.388577 AGGAAATTTGCTAAGTCCACCT 57.611 40.909 10.87 0.00 0.00 4.00
1485 1629 6.701340 TGAAGGTATGTATGTATGCATCTCC 58.299 40.000 0.19 4.46 36.58 3.71
1499 1643 1.028905 ATCTCCTCTCGCCTTCTTCG 58.971 55.000 0.00 0.00 0.00 3.79
1502 1646 1.001815 CTCCTCTCGCCTTCTTCGATC 60.002 57.143 0.00 0.00 35.25 3.69
1505 1649 2.606795 CCTCTCGCCTTCTTCGATCATC 60.607 54.545 0.00 0.00 35.25 2.92
1509 1653 1.224722 GCCTTCTTCGATCATCGGCC 61.225 60.000 7.33 0.00 40.88 6.13
1528 1672 1.479323 CCCAATTTGCACATCTCCTGG 59.521 52.381 0.00 0.00 0.00 4.45
1537 1681 2.435805 GCACATCTCCTGGTCCATCTTA 59.564 50.000 0.00 0.00 0.00 2.10
1571 1722 6.088616 CCGTGAAGAAATTTGCTCAAATTCTC 59.911 38.462 17.69 16.02 46.76 2.87
1574 1725 9.122613 GTGAAGAAATTTGCTCAAATTCTCTAC 57.877 33.333 17.69 13.93 46.76 2.59
1592 1743 7.806409 TCTCTACTGAGAATCTGAGATTCAG 57.194 40.000 30.40 24.07 45.42 3.02
1614 1765 3.693085 GTCAATCACCATGATCTGCAACT 59.307 43.478 0.00 0.00 35.76 3.16
1615 1766 3.943381 TCAATCACCATGATCTGCAACTC 59.057 43.478 0.00 0.00 35.76 3.01
1617 1768 0.376152 CACCATGATCTGCAACTCGC 59.624 55.000 0.00 0.00 42.89 5.03
1619 1770 0.745486 CCATGATCTGCAACTCGCCA 60.745 55.000 0.00 0.00 41.33 5.69
1620 1771 1.306148 CATGATCTGCAACTCGCCAT 58.694 50.000 0.00 0.00 41.33 4.40
1625 1776 0.960364 TCTGCAACTCGCCATTTCCC 60.960 55.000 0.00 0.00 41.33 3.97
1630 1781 2.830370 CTCGCCATTTCCCCAGGC 60.830 66.667 0.00 0.00 44.89 4.85
1677 1842 1.700042 GCTCGGTCCTTCCATCCCAT 61.700 60.000 0.00 0.00 35.57 4.00
1678 1843 0.839946 CTCGGTCCTTCCATCCCATT 59.160 55.000 0.00 0.00 35.57 3.16
1680 1845 0.179018 CGGTCCTTCCATCCCATTCC 60.179 60.000 0.00 0.00 35.57 3.01
1681 1846 0.186143 GGTCCTTCCATCCCATTCCC 59.814 60.000 0.00 0.00 35.97 3.97
1684 1849 0.186873 CCTTCCATCCCATTCCCAGG 59.813 60.000 0.00 0.00 0.00 4.45
1686 1851 0.630673 TTCCATCCCATTCCCAGGTG 59.369 55.000 0.00 0.00 0.00 4.00
1687 1852 0.253583 TCCATCCCATTCCCAGGTGA 60.254 55.000 0.00 0.00 0.00 4.02
1688 1853 0.630673 CCATCCCATTCCCAGGTGAA 59.369 55.000 0.00 0.00 0.00 3.18
1741 1918 0.526524 GATCTCACCGGCAGTTCTCG 60.527 60.000 0.00 0.00 0.00 4.04
1961 2138 2.506438 CCGAAGCGTCGTCTTCCC 60.506 66.667 20.36 2.64 46.21 3.97
2006 2201 1.374125 GGCATTGGGGACGTTTTGC 60.374 57.895 0.00 0.00 0.00 3.68
2017 2212 0.949105 ACGTTTTGCGAGATCGGCTT 60.949 50.000 12.10 0.00 44.77 4.35
2279 2510 2.851263 ACCTCATACGAAGGTTGCAA 57.149 45.000 0.00 0.00 30.72 4.08
2300 2531 1.019278 TGGCGTTCTTCAATCCGAGC 61.019 55.000 0.00 0.00 0.00 5.03
2302 2533 0.371645 GCGTTCTTCAATCCGAGCTG 59.628 55.000 0.00 0.00 0.00 4.24
2304 2535 2.544685 CGTTCTTCAATCCGAGCTGAT 58.455 47.619 0.00 0.00 0.00 2.90
2363 2594 5.334646 CCAGACAACATTCAGACAAGTGATG 60.335 44.000 0.00 0.00 0.00 3.07
2366 2597 6.319658 AGACAACATTCAGACAAGTGATGTTT 59.680 34.615 0.00 0.00 44.12 2.83
2525 2766 1.462283 CAGAAGAAGATGTGTGGCACG 59.538 52.381 13.77 0.00 37.14 5.34
2555 2799 0.953471 TGGCGAACCATCTGAAACCG 60.953 55.000 0.00 0.00 42.67 4.44
2668 2912 1.515952 CTCGCAGCTCTCCACTTCG 60.516 63.158 0.00 0.00 0.00 3.79
2884 3131 3.474570 AGGTCCATGGCGCTCCTC 61.475 66.667 6.96 0.00 0.00 3.71
3043 3290 2.278401 GCGTACGACCGGGATGAC 60.278 66.667 21.65 0.00 0.00 3.06
3046 3293 3.520862 TACGACCGGGATGACGCC 61.521 66.667 6.32 0.00 0.00 5.68
3168 3415 2.125350 GCTCCTTCCGTGCCAGAG 60.125 66.667 0.00 0.00 0.00 3.35
3315 3568 2.671177 CGAACAACAGCAGCGGGAG 61.671 63.158 0.00 0.00 0.00 4.30
3337 3590 2.359975 CAAGAACCGGAGCCCACC 60.360 66.667 9.46 0.00 0.00 4.61
3347 3600 4.353437 AGCCCACCGACGTCGAAC 62.353 66.667 37.65 20.72 43.02 3.95
3358 3614 2.652642 CGACGTCGAACAAGAAGAAGAG 59.347 50.000 33.35 0.00 43.02 2.85
3363 3619 1.443802 GAACAAGAAGAAGAGGGCGG 58.556 55.000 0.00 0.00 0.00 6.13
3697 3953 1.027255 TCAGAGAGCTCCGGAAGACG 61.027 60.000 10.93 0.00 43.80 4.18
3706 3962 1.183030 TCCGGAAGACGCTTGGAGAA 61.183 55.000 0.00 0.00 42.52 2.87
3728 3984 3.713764 AGATACCATGGCTAGCTGAAAGT 59.286 43.478 13.04 8.71 35.30 2.66
3752 4008 4.195334 GGCCGGGGTCATGCTCAT 62.195 66.667 2.18 0.00 0.00 2.90
3753 4009 2.903855 GCCGGGGTCATGCTCATG 60.904 66.667 2.18 3.55 40.09 3.07
3754 4010 2.903855 CCGGGGTCATGCTCATGC 60.904 66.667 5.04 1.33 38.65 4.06
3791 4047 4.141158 AGAGGTGACCAATTCTTCAACCTT 60.141 41.667 3.63 0.00 28.82 3.50
3792 4048 4.145052 AGGTGACCAATTCTTCAACCTTC 58.855 43.478 3.63 0.00 28.82 3.46
3794 4050 2.552315 TGACCAATTCTTCAACCTTCGC 59.448 45.455 0.00 0.00 0.00 4.70
3805 4064 2.053627 CAACCTTCGCACTGAAAATGC 58.946 47.619 0.00 0.00 39.81 3.56
3920 4180 2.945008 TGATCCTTGTGATTTGATCGGC 59.055 45.455 0.00 0.00 37.11 5.54
3928 4188 2.096496 GTGATTTGATCGGCTGGAGTTG 59.904 50.000 0.00 0.00 0.00 3.16
3941 4201 1.205655 TGGAGTTGGAGCTGATCGAAG 59.794 52.381 0.00 0.00 0.00 3.79
3979 4239 5.675538 AGGTTGTAAATAGTGATGAGGCTC 58.324 41.667 7.79 7.79 0.00 4.70
3980 4240 4.508124 GGTTGTAAATAGTGATGAGGCTCG 59.492 45.833 10.42 0.00 0.00 5.03
3982 4242 5.339008 TGTAAATAGTGATGAGGCTCGTT 57.661 39.130 11.18 0.00 0.00 3.85
3985 4245 2.941453 TAGTGATGAGGCTCGTTGAC 57.059 50.000 11.18 10.70 0.00 3.18
3986 4246 0.247736 AGTGATGAGGCTCGTTGACC 59.752 55.000 11.18 0.00 0.00 4.02
4018 4278 4.492791 CATGTGTGCATATATGGTGGTG 57.507 45.455 14.51 0.00 33.30 4.17
4019 4279 2.929641 TGTGTGCATATATGGTGGTGG 58.070 47.619 14.51 0.00 0.00 4.61
4020 4280 2.507471 TGTGTGCATATATGGTGGTGGA 59.493 45.455 14.51 0.00 0.00 4.02
4021 4281 2.878406 GTGTGCATATATGGTGGTGGAC 59.122 50.000 14.51 0.94 34.11 4.02
4022 4282 2.777114 TGTGCATATATGGTGGTGGACT 59.223 45.455 14.51 0.00 34.54 3.85
4031 4291 2.772191 TGGTGGACTGGTGCTGGT 60.772 61.111 0.00 0.00 0.00 4.00
4075 4335 2.166741 TTTGCGTCGAGTGTTTGTTG 57.833 45.000 0.00 0.00 0.00 3.33
4087 4347 4.691175 AGTGTTTGTTGTGCAATGCATTA 58.309 34.783 12.38 0.44 41.91 1.90
4093 4353 4.548494 TGTTGTGCAATGCATTACAGAAG 58.452 39.130 19.50 5.31 41.91 2.85
4094 4354 4.037803 TGTTGTGCAATGCATTACAGAAGT 59.962 37.500 19.50 0.00 41.91 3.01
4097 4357 5.244755 TGTGCAATGCATTACAGAAGTAGA 58.755 37.500 12.38 0.00 41.91 2.59
4104 4364 6.286240 TGCATTACAGAAGTAGAGTGTCAT 57.714 37.500 0.00 0.00 0.00 3.06
4105 4365 6.101997 TGCATTACAGAAGTAGAGTGTCATG 58.898 40.000 0.00 0.00 31.69 3.07
4111 4371 6.773638 ACAGAAGTAGAGTGTCATGGAATTT 58.226 36.000 0.00 0.00 0.00 1.82
4114 4374 4.910195 AGTAGAGTGTCATGGAATTTGCA 58.090 39.130 0.00 0.00 0.00 4.08
4125 4385 2.288702 TGGAATTTGCACCCGTTTCATG 60.289 45.455 0.00 0.00 0.00 3.07
4126 4386 2.288763 GGAATTTGCACCCGTTTCATGT 60.289 45.455 0.00 0.00 0.00 3.21
4127 4387 3.057174 GGAATTTGCACCCGTTTCATGTA 60.057 43.478 0.00 0.00 0.00 2.29
4135 4395 4.155280 GCACCCGTTTCATGTAGTACAAAT 59.845 41.667 7.16 0.00 0.00 2.32
4162 4422 9.632807 TTTTATCTTGACGGGTTTGAAATATTG 57.367 29.630 0.00 0.00 0.00 1.90
4186 4456 7.734942 TGTGAGGATGTAAGTATGATGCATAA 58.265 34.615 0.00 0.00 0.00 1.90
4190 4460 9.360093 GAGGATGTAAGTATGATGCATAACTAC 57.640 37.037 0.00 1.89 0.00 2.73
4191 4461 8.314751 AGGATGTAAGTATGATGCATAACTACC 58.685 37.037 0.00 4.37 0.00 3.18
4201 4471 6.418946 TGATGCATAACTACCATGGTGTAAA 58.581 36.000 28.17 14.25 0.00 2.01
4202 4472 6.887002 TGATGCATAACTACCATGGTGTAAAA 59.113 34.615 28.17 5.82 0.00 1.52
4208 4478 9.787532 CATAACTACCATGGTGTAAAATTTCAG 57.212 33.333 28.17 14.47 0.00 3.02
4212 4482 7.888021 ACTACCATGGTGTAAAATTTCAGATCA 59.112 33.333 28.17 0.00 0.00 2.92
4219 4489 9.190858 TGGTGTAAAATTTCAGATCAAAATTCG 57.809 29.630 15.22 0.00 35.75 3.34
4226 4496 5.687770 TTCAGATCAAAATTCGAAGTGCA 57.312 34.783 3.35 0.00 0.00 4.57
4227 4497 5.885230 TCAGATCAAAATTCGAAGTGCAT 57.115 34.783 3.35 0.00 0.00 3.96
4244 4514 9.214953 CGAAGTGCATATCTAGAAACAAAAATC 57.785 33.333 0.00 0.00 0.00 2.17
4248 4518 9.282247 GTGCATATCTAGAAACAAAAATCACAG 57.718 33.333 0.00 0.00 0.00 3.66
4251 4521 9.778993 CATATCTAGAAACAAAAATCACAGGTG 57.221 33.333 0.00 0.00 0.00 4.00
4271 4541 4.037684 GGTGACGGTGTGAATAGTAGCTAT 59.962 45.833 0.00 0.00 0.00 2.97
4297 4567 1.203075 ACCGGGCCTTTAATTCAACCA 60.203 47.619 6.32 0.00 0.00 3.67
4304 4574 5.414454 GGGCCTTTAATTCAACCAATTTTCC 59.586 40.000 0.84 0.00 36.09 3.13
4305 4575 6.000840 GGCCTTTAATTCAACCAATTTTCCA 58.999 36.000 0.00 0.00 36.09 3.53
4306 4576 6.658816 GGCCTTTAATTCAACCAATTTTCCAT 59.341 34.615 0.00 0.00 36.09 3.41
4307 4577 7.826744 GGCCTTTAATTCAACCAATTTTCCATA 59.173 33.333 0.00 0.00 36.09 2.74
4308 4578 8.882736 GCCTTTAATTCAACCAATTTTCCATAG 58.117 33.333 0.00 0.00 36.09 2.23
4309 4579 9.942850 CCTTTAATTCAACCAATTTTCCATAGT 57.057 29.630 0.00 0.00 36.09 2.12
4315 4585 9.936329 ATTCAACCAATTTTCCATAGTATAGGT 57.064 29.630 0.00 0.00 0.00 3.08
4316 4586 9.762381 TTCAACCAATTTTCCATAGTATAGGTT 57.238 29.630 0.00 0.00 36.16 3.50
4319 4589 9.862149 AACCAATTTTCCATAGTATAGGTTAGG 57.138 33.333 0.00 0.00 34.19 2.69
4320 4590 8.445588 ACCAATTTTCCATAGTATAGGTTAGGG 58.554 37.037 0.00 0.00 0.00 3.53
4321 4591 7.393515 CCAATTTTCCATAGTATAGGTTAGGGC 59.606 40.741 0.00 0.00 0.00 5.19
4322 4592 7.890169 ATTTTCCATAGTATAGGTTAGGGCT 57.110 36.000 0.00 0.00 0.00 5.19
4323 4593 6.930068 TTTCCATAGTATAGGTTAGGGCTC 57.070 41.667 0.00 0.00 0.00 4.70
4324 4594 5.880279 TCCATAGTATAGGTTAGGGCTCT 57.120 43.478 0.00 0.00 0.00 4.09
4325 4595 5.828871 TCCATAGTATAGGTTAGGGCTCTC 58.171 45.833 0.00 0.00 0.00 3.20
4326 4596 4.957327 CCATAGTATAGGTTAGGGCTCTCC 59.043 50.000 0.00 0.00 0.00 3.71
4340 4610 2.620585 GGCTCTCCCAATAAGACAATGC 59.379 50.000 0.00 0.00 0.00 3.56
4341 4611 3.282021 GCTCTCCCAATAAGACAATGCA 58.718 45.455 0.00 0.00 0.00 3.96
4342 4612 3.065925 GCTCTCCCAATAAGACAATGCAC 59.934 47.826 0.00 0.00 0.00 4.57
4343 4613 3.620488 TCTCCCAATAAGACAATGCACC 58.380 45.455 0.00 0.00 0.00 5.01
4344 4614 3.266772 TCTCCCAATAAGACAATGCACCT 59.733 43.478 0.00 0.00 0.00 4.00
4345 4615 3.355378 TCCCAATAAGACAATGCACCTG 58.645 45.455 0.00 0.00 0.00 4.00
4346 4616 3.091545 CCCAATAAGACAATGCACCTGT 58.908 45.455 2.97 2.97 0.00 4.00
4347 4617 3.119388 CCCAATAAGACAATGCACCTGTG 60.119 47.826 7.96 0.00 0.00 3.66
4348 4618 3.758023 CCAATAAGACAATGCACCTGTGA 59.242 43.478 7.96 0.00 0.00 3.58
4349 4619 4.218200 CCAATAAGACAATGCACCTGTGAA 59.782 41.667 7.96 0.00 0.00 3.18
4350 4620 5.278907 CCAATAAGACAATGCACCTGTGAAA 60.279 40.000 7.96 0.00 0.00 2.69
4351 4621 3.715628 AAGACAATGCACCTGTGAAAC 57.284 42.857 7.96 0.00 37.35 2.78
4352 4622 2.936202 AGACAATGCACCTGTGAAACT 58.064 42.857 7.96 0.00 38.04 2.66
4353 4623 4.085357 AGACAATGCACCTGTGAAACTA 57.915 40.909 7.96 0.00 38.04 2.24
4354 4624 4.460263 AGACAATGCACCTGTGAAACTAA 58.540 39.130 7.96 0.00 38.04 2.24
4355 4625 5.072741 AGACAATGCACCTGTGAAACTAAT 58.927 37.500 7.96 0.00 38.04 1.73
4356 4626 5.536161 AGACAATGCACCTGTGAAACTAATT 59.464 36.000 7.96 0.00 38.04 1.40
4357 4627 5.772521 ACAATGCACCTGTGAAACTAATTC 58.227 37.500 0.51 0.00 38.04 2.17
4358 4628 5.536161 ACAATGCACCTGTGAAACTAATTCT 59.464 36.000 0.51 0.00 38.92 2.40
4359 4629 6.040842 ACAATGCACCTGTGAAACTAATTCTT 59.959 34.615 0.51 0.00 38.92 2.52
4360 4630 7.230510 ACAATGCACCTGTGAAACTAATTCTTA 59.769 33.333 0.51 0.00 38.92 2.10
4361 4631 7.944729 ATGCACCTGTGAAACTAATTCTTAT 57.055 32.000 0.51 0.00 38.92 1.73
4362 4632 7.759489 TGCACCTGTGAAACTAATTCTTATT 57.241 32.000 0.51 0.00 38.92 1.40
4363 4633 8.177119 TGCACCTGTGAAACTAATTCTTATTT 57.823 30.769 0.51 0.00 38.92 1.40
4364 4634 8.637986 TGCACCTGTGAAACTAATTCTTATTTT 58.362 29.630 0.51 0.00 38.92 1.82
4365 4635 8.915654 GCACCTGTGAAACTAATTCTTATTTTG 58.084 33.333 0.51 0.00 38.92 2.44
4366 4636 8.915654 CACCTGTGAAACTAATTCTTATTTTGC 58.084 33.333 0.00 0.00 38.92 3.68
4367 4637 8.088365 ACCTGTGAAACTAATTCTTATTTTGCC 58.912 33.333 0.00 0.00 38.92 4.52
4368 4638 8.087750 CCTGTGAAACTAATTCTTATTTTGCCA 58.912 33.333 0.00 0.00 38.92 4.92
4369 4639 9.643693 CTGTGAAACTAATTCTTATTTTGCCAT 57.356 29.630 0.00 0.00 38.92 4.40
4370 4640 9.421806 TGTGAAACTAATTCTTATTTTGCCATG 57.578 29.630 0.00 0.00 38.92 3.66
4371 4641 8.872845 GTGAAACTAATTCTTATTTTGCCATGG 58.127 33.333 7.63 7.63 38.92 3.66
4372 4642 7.548780 TGAAACTAATTCTTATTTTGCCATGGC 59.451 33.333 30.54 30.54 38.92 4.40
4373 4643 7.548780 GAAACTAATTCTTATTTTGCCATGGCA 59.451 33.333 35.59 35.59 41.12 4.92
4384 4654 2.939460 GCCATGGCAAATTAAGACGT 57.061 45.000 32.08 0.00 41.49 4.34
4385 4655 3.230743 GCCATGGCAAATTAAGACGTT 57.769 42.857 32.08 0.00 41.49 3.99
4386 4656 3.584834 GCCATGGCAAATTAAGACGTTT 58.415 40.909 32.08 0.00 41.49 3.60
4387 4657 3.993736 GCCATGGCAAATTAAGACGTTTT 59.006 39.130 32.08 0.00 41.49 2.43
4388 4658 5.164954 GCCATGGCAAATTAAGACGTTTTA 58.835 37.500 32.08 0.00 41.49 1.52
4389 4659 5.061684 GCCATGGCAAATTAAGACGTTTTAC 59.938 40.000 32.08 0.00 41.49 2.01
4390 4660 5.575218 CCATGGCAAATTAAGACGTTTTACC 59.425 40.000 0.00 0.00 0.00 2.85
4391 4661 5.769484 TGGCAAATTAAGACGTTTTACCA 57.231 34.783 0.00 0.00 0.00 3.25
4392 4662 6.334102 TGGCAAATTAAGACGTTTTACCAT 57.666 33.333 0.00 0.00 0.00 3.55
4393 4663 6.153067 TGGCAAATTAAGACGTTTTACCATG 58.847 36.000 0.00 0.00 0.00 3.66
4394 4664 5.575218 GGCAAATTAAGACGTTTTACCATGG 59.425 40.000 11.19 11.19 0.00 3.66
4395 4665 5.061684 GCAAATTAAGACGTTTTACCATGGC 59.938 40.000 13.04 0.00 0.00 4.40
4396 4666 5.968528 AATTAAGACGTTTTACCATGGCA 57.031 34.783 13.04 0.00 0.00 4.92
4397 4667 5.968528 ATTAAGACGTTTTACCATGGCAA 57.031 34.783 13.04 1.21 0.00 4.52
4398 4668 5.769484 TTAAGACGTTTTACCATGGCAAA 57.231 34.783 13.04 9.21 0.00 3.68
4399 4669 4.864704 AAGACGTTTTACCATGGCAAAT 57.135 36.364 13.04 0.00 0.00 2.32
4400 4670 4.864704 AGACGTTTTACCATGGCAAATT 57.135 36.364 13.04 2.96 0.00 1.82
4401 4671 5.208463 AGACGTTTTACCATGGCAAATTT 57.792 34.783 13.04 2.61 0.00 1.82
4402 4672 6.334102 AGACGTTTTACCATGGCAAATTTA 57.666 33.333 13.04 0.00 0.00 1.40
4403 4673 6.750148 AGACGTTTTACCATGGCAAATTTAA 58.250 32.000 13.04 0.00 0.00 1.52
4404 4674 7.210873 AGACGTTTTACCATGGCAAATTTAAA 58.789 30.769 13.04 5.25 0.00 1.52
4405 4675 7.711339 AGACGTTTTACCATGGCAAATTTAAAA 59.289 29.630 13.04 11.23 0.00 1.52
4406 4676 8.384607 ACGTTTTACCATGGCAAATTTAAAAT 57.615 26.923 13.04 0.00 0.00 1.82
4407 4677 8.286097 ACGTTTTACCATGGCAAATTTAAAATG 58.714 29.630 21.91 21.91 34.10 2.32
4408 4678 8.286097 CGTTTTACCATGGCAAATTTAAAATGT 58.714 29.630 13.04 0.00 0.00 2.71
4409 4679 9.958234 GTTTTACCATGGCAAATTTAAAATGTT 57.042 25.926 13.04 0.00 0.00 2.71
4412 4682 9.956720 TTACCATGGCAAATTTAAAATGTTTTG 57.043 25.926 13.04 7.38 33.32 2.44
4418 4688 7.335861 GCAAATTTAAAATGTTTTGCCATGG 57.664 32.000 19.39 7.63 45.01 3.66
4419 4689 6.128876 GCAAATTTAAAATGTTTTGCCATGGC 60.129 34.615 30.54 30.54 45.01 4.40
4430 4700 2.354902 GCCATGGCAAGTTTGGAGT 58.645 52.632 32.08 0.00 41.49 3.85
4431 4701 0.681175 GCCATGGCAAGTTTGGAGTT 59.319 50.000 32.08 0.00 41.49 3.01
4432 4702 1.070601 GCCATGGCAAGTTTGGAGTTT 59.929 47.619 32.08 0.00 41.49 2.66
4433 4703 2.485302 GCCATGGCAAGTTTGGAGTTTT 60.485 45.455 32.08 0.00 41.49 2.43
4434 4704 3.244044 GCCATGGCAAGTTTGGAGTTTTA 60.244 43.478 32.08 0.00 41.49 1.52
4435 4705 4.563374 GCCATGGCAAGTTTGGAGTTTTAT 60.563 41.667 32.08 0.00 41.49 1.40
4436 4706 5.550290 CCATGGCAAGTTTGGAGTTTTATT 58.450 37.500 0.00 0.00 31.94 1.40
4437 4707 5.639082 CCATGGCAAGTTTGGAGTTTTATTC 59.361 40.000 0.00 0.00 31.94 1.75
4438 4708 5.860941 TGGCAAGTTTGGAGTTTTATTCA 57.139 34.783 0.00 0.00 0.00 2.57
4439 4709 5.596845 TGGCAAGTTTGGAGTTTTATTCAC 58.403 37.500 0.00 0.00 0.00 3.18
4440 4710 5.127845 TGGCAAGTTTGGAGTTTTATTCACA 59.872 36.000 0.00 0.00 0.00 3.58
4441 4711 5.462068 GGCAAGTTTGGAGTTTTATTCACAC 59.538 40.000 0.00 0.00 0.00 3.82
4442 4712 6.273071 GCAAGTTTGGAGTTTTATTCACACT 58.727 36.000 0.00 0.00 0.00 3.55
4443 4713 6.417930 GCAAGTTTGGAGTTTTATTCACACTC 59.582 38.462 0.00 0.00 36.91 3.51
4452 4722 8.965986 GAGTTTTATTCACACTCCAATTAACC 57.034 34.615 0.00 0.00 32.26 2.85
4453 4723 8.472007 AGTTTTATTCACACTCCAATTAACCA 57.528 30.769 0.00 0.00 0.00 3.67
4454 4724 9.088987 AGTTTTATTCACACTCCAATTAACCAT 57.911 29.630 0.00 0.00 0.00 3.55
4455 4725 9.139174 GTTTTATTCACACTCCAATTAACCATG 57.861 33.333 0.00 0.00 0.00 3.66
4456 4726 5.920193 ATTCACACTCCAATTAACCATGG 57.080 39.130 11.19 11.19 38.09 3.66
4457 4727 3.088532 TCACACTCCAATTAACCATGGC 58.911 45.455 13.04 0.00 36.62 4.40
4458 4728 2.824936 CACACTCCAATTAACCATGGCA 59.175 45.455 13.04 0.00 36.62 4.92
4459 4729 3.257873 CACACTCCAATTAACCATGGCAA 59.742 43.478 13.04 6.76 36.62 4.52
4460 4730 4.081531 CACACTCCAATTAACCATGGCAAT 60.082 41.667 13.04 9.07 36.62 3.56
4461 4731 5.126869 CACACTCCAATTAACCATGGCAATA 59.873 40.000 13.04 0.00 36.62 1.90
4462 4732 5.719085 ACACTCCAATTAACCATGGCAATAA 59.281 36.000 13.04 9.59 36.62 1.40
4463 4733 6.212388 ACACTCCAATTAACCATGGCAATAAA 59.788 34.615 13.04 0.00 36.62 1.40
4464 4734 7.102346 CACTCCAATTAACCATGGCAATAAAA 58.898 34.615 13.04 0.00 36.62 1.52
4465 4735 7.278424 CACTCCAATTAACCATGGCAATAAAAG 59.722 37.037 13.04 11.27 36.62 2.27
4466 4736 7.038373 ACTCCAATTAACCATGGCAATAAAAGT 60.038 33.333 13.04 11.82 36.62 2.66
4467 4737 8.367660 TCCAATTAACCATGGCAATAAAAGTA 57.632 30.769 13.04 0.00 36.62 2.24
4468 4738 8.816894 TCCAATTAACCATGGCAATAAAAGTAA 58.183 29.630 13.04 0.00 36.62 2.24
4469 4739 9.442047 CCAATTAACCATGGCAATAAAAGTAAA 57.558 29.630 13.04 0.00 0.00 2.01
4494 4764 6.882768 AATTGCCATGGGAATTTAGGTAAA 57.117 33.333 31.93 3.92 42.10 2.01
4495 4765 7.450323 AATTGCCATGGGAATTTAGGTAAAT 57.550 32.000 31.93 12.38 42.10 1.40
4496 4766 6.882768 TTGCCATGGGAATTTAGGTAAATT 57.117 33.333 15.64 7.31 45.60 1.82
4497 4767 6.882768 TGCCATGGGAATTTAGGTAAATTT 57.117 33.333 15.13 0.00 43.67 1.82
4498 4768 7.979786 TGCCATGGGAATTTAGGTAAATTTA 57.020 32.000 15.13 0.00 43.67 1.40
4499 4769 7.787028 TGCCATGGGAATTTAGGTAAATTTAC 58.213 34.615 18.30 18.30 43.67 2.01
4500 4770 7.400339 TGCCATGGGAATTTAGGTAAATTTACA 59.600 33.333 25.59 9.18 43.67 2.41
4501 4771 8.261522 GCCATGGGAATTTAGGTAAATTTACAA 58.738 33.333 25.59 14.31 43.67 2.41
4528 4798 9.292195 TGTTAATAAGGGTAAATTAGCTATGGC 57.708 33.333 0.00 0.00 39.06 4.40
4529 4799 9.292195 GTTAATAAGGGTAAATTAGCTATGGCA 57.708 33.333 3.10 0.00 41.70 4.92
4530 4800 9.869667 TTAATAAGGGTAAATTAGCTATGGCAA 57.130 29.630 3.10 0.00 41.70 4.52
4531 4801 8.776061 AATAAGGGTAAATTAGCTATGGCAAA 57.224 30.769 3.10 0.00 41.70 3.68
4532 4802 8.956446 ATAAGGGTAAATTAGCTATGGCAAAT 57.044 30.769 3.10 0.00 41.70 2.32
4534 4804 8.776061 AAGGGTAAATTAGCTATGGCAAATAA 57.224 30.769 3.10 0.00 41.70 1.40
4535 4805 8.776061 AGGGTAAATTAGCTATGGCAAATAAA 57.224 30.769 3.10 0.00 41.70 1.40
4536 4806 9.207868 AGGGTAAATTAGCTATGGCAAATAAAA 57.792 29.630 3.10 0.00 41.70 1.52
4537 4807 9.825109 GGGTAAATTAGCTATGGCAAATAAAAA 57.175 29.630 3.10 0.00 41.70 1.94
4553 4823 9.127006 GCAAATAAAAAGTAAAAATTGCCATGG 57.873 29.630 7.63 7.63 36.75 3.66
4554 4824 9.127006 CAAATAAAAAGTAAAAATTGCCATGGC 57.873 29.630 30.54 30.54 42.35 4.40
4587 4857 7.789349 AGTTAAATATTGCCATGGGGATTTAGT 59.211 33.333 15.13 0.00 35.59 2.24
4590 4860 8.560124 AAATATTGCCATGGGGATTTAGTTAA 57.440 30.769 15.13 0.00 35.59 2.01
4592 4862 8.740616 ATATTGCCATGGGGATTTAGTTAAAT 57.259 30.769 15.13 0.00 38.51 1.40
4594 4864 6.478512 TGCCATGGGGATTTAGTTAAATTC 57.521 37.500 15.13 0.00 36.13 2.17
4596 4866 5.528870 CCATGGGGATTTAGTTAAATTCGC 58.471 41.667 2.85 11.17 41.75 4.70
4598 4868 4.862371 TGGGGATTTAGTTAAATTCGCCT 58.138 39.130 14.04 0.00 41.09 5.52
4617 4887 6.416415 TCGCCTTGTTAATAAGGGTCAATTA 58.584 36.000 26.70 3.68 45.91 1.40
4618 4888 6.540914 TCGCCTTGTTAATAAGGGTCAATTAG 59.459 38.462 26.70 4.44 45.91 1.73
4626 4896 3.205815 GGGTCAATTAGCCATGGCA 57.794 52.632 37.18 19.62 45.71 4.92
4629 4899 2.435437 GGGTCAATTAGCCATGGCAAAT 59.565 45.455 37.18 20.37 45.71 2.32
4633 4906 6.290605 GGTCAATTAGCCATGGCAAATAAAT 58.709 36.000 37.18 23.02 44.88 1.40
4635 4908 8.096414 GGTCAATTAGCCATGGCAAATAAATAT 58.904 33.333 37.18 16.55 44.88 1.28
4695 4968 4.954089 TGGGGATTTAGGTAAATTTGCCT 58.046 39.130 27.82 27.82 45.62 4.75
4731 5005 8.096414 GGTCAATTAGCCATGGCAAATAAATAT 58.904 33.333 37.18 16.55 44.88 1.28
4778 5053 7.732222 AGTTCAATTTGCCATAGGGATTTAA 57.268 32.000 0.00 0.00 35.59 1.52
4962 5239 4.486125 AAAAATTGCCATGGGGATGTAC 57.514 40.909 15.13 0.00 35.59 2.90
4964 5241 0.843309 ATTGCCATGGGGATGTACGA 59.157 50.000 15.13 0.00 35.59 3.43
4970 5247 3.886505 GCCATGGGGATGTACGAAAATTA 59.113 43.478 15.13 0.00 35.59 1.40
4975 5252 3.949113 GGGGATGTACGAAAATTAGCCAA 59.051 43.478 0.00 0.00 0.00 4.52
4976 5253 4.399934 GGGGATGTACGAAAATTAGCCAAA 59.600 41.667 0.00 0.00 0.00 3.28
4997 5320 7.188157 CCAAATCATTTTGTGTTGTTTTGGAG 58.812 34.615 15.47 0.00 46.28 3.86
5016 5339 7.455641 TTGGAGAATTTAAAGAATTACCGCA 57.544 32.000 0.00 0.00 0.00 5.69
5119 5443 6.582636 TCGATAACTATGTTTGCCATCTTCT 58.417 36.000 0.00 0.00 34.86 2.85
5125 5449 6.721318 ACTATGTTTGCCATCTTCTAGGAAA 58.279 36.000 0.00 0.00 34.86 3.13
5177 5502 9.504708 AATTTTGCCATGATCAATCAACTAAAA 57.495 25.926 0.00 2.72 40.69 1.52
5230 5555 7.611213 AGATTAGTTTCCATGGTAGAAAACG 57.389 36.000 12.58 0.00 35.13 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.358725 TGTAAATCCGTGACTGAGCATAGTA 59.641 40.000 0.00 0.00 0.00 1.82
165 166 1.443194 GATGCAGCGCTGGTGTTTG 60.443 57.895 36.47 12.94 33.19 2.93
166 167 1.580845 GAGATGCAGCGCTGGTGTTT 61.581 55.000 36.47 5.64 33.19 2.83
178 179 3.333899 ATGCGCCCTGTGAGATGCA 62.334 57.895 4.18 0.00 36.69 3.96
277 278 0.179234 TTCAGCTCACGGGTTTCACA 59.821 50.000 0.00 0.00 0.00 3.58
303 308 1.484240 CTCCATGGTCCTCCTTCTCAC 59.516 57.143 12.58 0.00 34.23 3.51
316 321 1.001764 TTGTCTGGCTGCTCCATGG 60.002 57.895 4.97 4.97 45.50 3.66
331 336 0.319900 ACAGCGACATTCGAGCTTGT 60.320 50.000 0.00 0.00 43.74 3.16
376 381 1.717728 GCGAAACACAACGACAGCG 60.718 57.895 0.00 0.00 44.79 5.18
544 563 2.158769 TGAGCACAACACCAGACAAGAT 60.159 45.455 0.00 0.00 0.00 2.40
545 564 1.209261 TGAGCACAACACCAGACAAGA 59.791 47.619 0.00 0.00 0.00 3.02
605 628 1.409427 GGAACCCACAGATACTCCGAG 59.591 57.143 0.00 0.00 0.00 4.63
617 640 2.668550 GCCACGTCTGGAACCCAC 60.669 66.667 0.00 0.00 40.55 4.61
618 641 3.948719 GGCCACGTCTGGAACCCA 61.949 66.667 0.00 0.00 40.55 4.51
653 676 8.450578 TTCATGTTTATAGATGTAAAGCTGGG 57.549 34.615 0.00 0.00 0.00 4.45
669 692 6.602803 TGGAGATGCTTATGCTTTCATGTTTA 59.397 34.615 1.96 0.00 40.48 2.01
673 696 5.240844 TCATGGAGATGCTTATGCTTTCATG 59.759 40.000 1.96 8.20 40.48 3.07
703 726 2.787035 GGGTATTATTTCCCAGGGGTGA 59.213 50.000 5.33 0.00 42.95 4.02
760 783 8.890410 ACTGAGGGAGTACTAAATTTAGTGTA 57.110 34.615 31.97 16.50 43.44 2.90
764 787 6.383147 TGGGACTGAGGGAGTACTAAATTTAG 59.617 42.308 21.21 21.21 35.54 1.85
767 790 4.695606 TGGGACTGAGGGAGTACTAAATT 58.304 43.478 0.00 0.00 35.54 1.82
768 791 4.348020 TGGGACTGAGGGAGTACTAAAT 57.652 45.455 0.00 0.00 35.54 1.40
769 792 3.839323 TGGGACTGAGGGAGTACTAAA 57.161 47.619 0.00 0.00 35.54 1.85
770 793 5.476950 TTATGGGACTGAGGGAGTACTAA 57.523 43.478 0.00 0.00 35.54 2.24
771 794 5.681494 ATTATGGGACTGAGGGAGTACTA 57.319 43.478 0.00 0.00 35.54 1.82
772 795 4.561254 ATTATGGGACTGAGGGAGTACT 57.439 45.455 0.00 0.00 35.54 2.73
773 796 7.894364 TCTTATATTATGGGACTGAGGGAGTAC 59.106 40.741 0.00 0.00 33.83 2.73
774 797 8.008104 TCTTATATTATGGGACTGAGGGAGTA 57.992 38.462 0.00 0.00 33.83 2.59
775 798 6.875469 TCTTATATTATGGGACTGAGGGAGT 58.125 40.000 0.00 0.00 37.76 3.85
778 801 5.485353 TGCTCTTATATTATGGGACTGAGGG 59.515 44.000 0.00 0.00 0.00 4.30
783 806 8.099537 CAGTCAATGCTCTTATATTATGGGACT 58.900 37.037 0.00 0.00 0.00 3.85
787 810 8.837788 TGACAGTCAATGCTCTTATATTATGG 57.162 34.615 0.00 0.00 0.00 2.74
803 826 9.276590 CCATAATATAAGAGCATTGACAGTCAA 57.723 33.333 18.42 18.42 41.09 3.18
806 829 7.880195 GTCCCATAATATAAGAGCATTGACAGT 59.120 37.037 0.00 0.00 0.00 3.55
807 830 7.063898 CGTCCCATAATATAAGAGCATTGACAG 59.936 40.741 0.00 0.00 0.00 3.51
808 831 6.873605 CGTCCCATAATATAAGAGCATTGACA 59.126 38.462 0.00 0.00 0.00 3.58
809 832 6.313905 CCGTCCCATAATATAAGAGCATTGAC 59.686 42.308 0.00 0.00 0.00 3.18
810 833 6.212589 TCCGTCCCATAATATAAGAGCATTGA 59.787 38.462 0.00 0.00 0.00 2.57
811 834 6.406370 TCCGTCCCATAATATAAGAGCATTG 58.594 40.000 0.00 0.00 0.00 2.82
869 948 6.176183 AGTAAATGTGAATGGTCCTTCTCTG 58.824 40.000 0.00 0.00 0.00 3.35
879 958 9.865321 AATGAATGAGAAAGTAAATGTGAATGG 57.135 29.630 0.00 0.00 0.00 3.16
906 992 8.985315 AATGCTCCATTCTGTTCTAATGAATA 57.015 30.769 0.00 0.00 36.61 1.75
907 993 7.893124 AATGCTCCATTCTGTTCTAATGAAT 57.107 32.000 0.00 0.00 36.61 2.57
908 994 8.985315 ATAATGCTCCATTCTGTTCTAATGAA 57.015 30.769 0.00 0.00 36.61 2.57
909 995 8.985315 AATAATGCTCCATTCTGTTCTAATGA 57.015 30.769 0.00 0.00 36.61 2.57
912 998 9.547753 GAGTAATAATGCTCCATTCTGTTCTAA 57.452 33.333 0.00 0.00 35.54 2.10
1025 1126 7.238933 TCCCATCTAAACCTTTTTCCTCTCTAA 59.761 37.037 0.00 0.00 0.00 2.10
1026 1127 6.733807 TCCCATCTAAACCTTTTTCCTCTCTA 59.266 38.462 0.00 0.00 0.00 2.43
1032 1139 4.830600 TGTGTCCCATCTAAACCTTTTTCC 59.169 41.667 0.00 0.00 0.00 3.13
1034 1141 6.553100 TCATTGTGTCCCATCTAAACCTTTTT 59.447 34.615 0.00 0.00 0.00 1.94
1073 1181 5.392057 GGTGGCTTTCTCAATTACTAGTTGC 60.392 44.000 0.00 0.00 0.00 4.17
1078 1186 4.566907 GGGTGGTGGCTTTCTCAATTACTA 60.567 45.833 0.00 0.00 0.00 1.82
1079 1187 3.421844 GGTGGTGGCTTTCTCAATTACT 58.578 45.455 0.00 0.00 0.00 2.24
1080 1188 2.492088 GGGTGGTGGCTTTCTCAATTAC 59.508 50.000 0.00 0.00 0.00 1.89
1117 1226 7.063074 GGTGAATGCTCATGATCTTTTCTTTTG 59.937 37.037 0.00 0.00 33.05 2.44
1133 1253 1.078848 AGGCGACAGGTGAATGCTC 60.079 57.895 0.00 0.00 0.00 4.26
1163 1283 8.717821 CCAGATTAGACGAAATAAACAACAAGA 58.282 33.333 0.00 0.00 0.00 3.02
1164 1284 8.504005 ACCAGATTAGACGAAATAAACAACAAG 58.496 33.333 0.00 0.00 0.00 3.16
1165 1285 8.286800 CACCAGATTAGACGAAATAAACAACAA 58.713 33.333 0.00 0.00 0.00 2.83
1188 1308 2.029380 GGCAAGGTTGGAAATGTACACC 60.029 50.000 0.00 0.00 0.00 4.16
1206 1326 3.181451 GGGATATGAACTCTGTCATGGCA 60.181 47.826 0.00 0.00 38.69 4.92
1217 1337 2.625790 GACAGCGAGAGGGATATGAACT 59.374 50.000 0.00 0.00 0.00 3.01
1218 1338 2.288518 GGACAGCGAGAGGGATATGAAC 60.289 54.545 0.00 0.00 0.00 3.18
1220 1340 1.621992 GGACAGCGAGAGGGATATGA 58.378 55.000 0.00 0.00 0.00 2.15
1222 1342 0.485099 AGGGACAGCGAGAGGGATAT 59.515 55.000 0.00 0.00 0.00 1.63
1223 1343 0.261991 AAGGGACAGCGAGAGGGATA 59.738 55.000 0.00 0.00 0.00 2.59
1249 1380 6.080648 TCTACGCGTATCAATAATTCCAGT 57.919 37.500 20.91 0.00 0.00 4.00
1250 1381 7.402811 TTTCTACGCGTATCAATAATTCCAG 57.597 36.000 20.91 4.87 0.00 3.86
1251 1382 7.870954 AGATTTCTACGCGTATCAATAATTCCA 59.129 33.333 20.91 0.00 0.00 3.53
1252 1383 8.240883 AGATTTCTACGCGTATCAATAATTCC 57.759 34.615 20.91 8.36 0.00 3.01
1253 1384 9.130312 AGAGATTTCTACGCGTATCAATAATTC 57.870 33.333 20.91 16.19 0.00 2.17
1255 1386 8.516234 AGAGAGATTTCTACGCGTATCAATAAT 58.484 33.333 20.91 13.82 32.53 1.28
1294 1430 6.702716 ACCGTCCAATAAACAAAGAAAGAA 57.297 33.333 0.00 0.00 0.00 2.52
1295 1431 6.702716 AACCGTCCAATAAACAAAGAAAGA 57.297 33.333 0.00 0.00 0.00 2.52
1336 1472 1.153208 GGATGGAGCTGGAGCACTG 60.153 63.158 0.00 0.00 45.16 3.66
1363 1499 2.214181 CTCCTCCAGACCCACGTTCG 62.214 65.000 0.00 0.00 0.00 3.95
1402 1541 4.082190 GGTGGACTTAGCAAATTTCCTTCC 60.082 45.833 0.00 0.00 0.00 3.46
1417 1556 5.420409 GTCGATGAAATCTTAGGTGGACTT 58.580 41.667 0.00 0.00 42.58 3.01
1419 1558 3.797256 CGTCGATGAAATCTTAGGTGGAC 59.203 47.826 0.00 0.00 42.58 4.02
1423 1562 5.067936 AGTGATCGTCGATGAAATCTTAGGT 59.932 40.000 13.54 0.00 42.58 3.08
1424 1563 5.524284 AGTGATCGTCGATGAAATCTTAGG 58.476 41.667 13.54 0.00 42.58 2.69
1426 1565 5.681543 CGAAGTGATCGTCGATGAAATCTTA 59.318 40.000 13.54 0.00 46.52 2.10
1450 1590 7.212976 ACATACATACCTTCATCTCATGTGTC 58.787 38.462 0.00 0.00 32.39 3.67
1454 1594 7.820872 TGCATACATACATACCTTCATCTCATG 59.179 37.037 0.00 0.00 0.00 3.07
1485 1629 2.660490 GATGATCGAAGAAGGCGAGAG 58.340 52.381 0.00 0.00 43.58 3.20
1499 1643 0.746063 TGCAAATTGGGCCGATGATC 59.254 50.000 7.13 0.00 0.00 2.92
1502 1646 0.176219 ATGTGCAAATTGGGCCGATG 59.824 50.000 7.13 0.00 0.00 3.84
1505 1649 0.179129 GAGATGTGCAAATTGGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
1509 1653 2.165030 GACCAGGAGATGTGCAAATTGG 59.835 50.000 4.06 4.06 0.00 3.16
1528 1672 1.069358 CGGAGAAGGGCTAAGATGGAC 59.931 57.143 0.00 0.00 0.00 4.02
1586 1737 5.277876 GCAGATCATGGTGATTGACTGAATC 60.278 44.000 9.84 0.00 37.20 2.52
1592 1743 3.693085 AGTTGCAGATCATGGTGATTGAC 59.307 43.478 0.00 0.00 37.20 3.18
1617 1768 1.188863 CTTCTTGCCTGGGGAAATGG 58.811 55.000 0.00 0.00 0.00 3.16
1619 1770 0.114954 TGCTTCTTGCCTGGGGAAAT 59.885 50.000 0.00 0.00 42.00 2.17
1620 1771 0.540365 CTGCTTCTTGCCTGGGGAAA 60.540 55.000 0.00 0.00 42.00 3.13
1625 1776 1.881602 GAAGCTGCTTCTTGCCTGG 59.118 57.895 29.91 0.00 42.00 4.45
1641 1792 1.200252 GAGCTGTCACTGAGCGTAGAA 59.800 52.381 0.00 0.00 41.61 2.10
1643 1794 0.522286 CGAGCTGTCACTGAGCGTAG 60.522 60.000 0.00 0.00 41.61 3.51
1645 1796 2.256764 CGAGCTGTCACTGAGCGT 59.743 61.111 0.00 0.00 41.61 5.07
1646 1797 2.505777 CCGAGCTGTCACTGAGCG 60.506 66.667 0.00 0.00 41.61 5.03
1647 1798 1.445238 GACCGAGCTGTCACTGAGC 60.445 63.158 0.00 0.00 35.29 4.26
1677 1842 2.621407 GCCATTGATCTTCACCTGGGAA 60.621 50.000 0.00 0.00 32.72 3.97
1678 1843 1.064463 GCCATTGATCTTCACCTGGGA 60.064 52.381 0.00 0.00 32.72 4.37
1680 1845 2.431954 AGCCATTGATCTTCACCTGG 57.568 50.000 0.00 0.00 34.31 4.45
1681 1846 4.148128 AGTAGCCATTGATCTTCACCTG 57.852 45.455 0.00 0.00 0.00 4.00
1684 1849 7.045126 ACTAGTAGTAGCCATTGATCTTCAC 57.955 40.000 0.00 0.00 0.00 3.18
1741 1918 4.321966 GCCGAGGATAGCAGGGCC 62.322 72.222 0.00 0.00 37.82 5.80
1906 2083 1.528776 GAGGTCGCGGTAGGAGGAT 60.529 63.158 6.13 0.00 0.00 3.24
2113 2308 0.461870 CCTTCAACCGATCGATGGCA 60.462 55.000 18.66 5.30 0.00 4.92
2279 2510 2.009774 CTCGGATTGAAGAACGCCATT 58.990 47.619 0.00 0.00 0.00 3.16
2300 2531 1.467734 GCCACTCTGAACTTGCATCAG 59.532 52.381 9.15 9.15 44.53 2.90
2302 2533 1.527034 TGCCACTCTGAACTTGCATC 58.473 50.000 0.00 0.00 0.00 3.91
2304 2535 1.761449 TTTGCCACTCTGAACTTGCA 58.239 45.000 0.00 0.00 0.00 4.08
2363 2594 5.753438 GGGGTTCTTCATCTTTTGTTGAAAC 59.247 40.000 0.00 0.00 37.59 2.78
2366 2597 4.541705 TGGGGTTCTTCATCTTTTGTTGA 58.458 39.130 0.00 0.00 0.00 3.18
2555 2799 2.821688 GCTCATCCGCTGCAGCTTC 61.822 63.158 34.22 8.48 39.32 3.86
2566 2810 1.700042 ATTCAGGGTCCGGCTCATCC 61.700 60.000 0.00 0.00 0.00 3.51
2668 2912 3.125573 GGCGCCCGGAAAGAAGAC 61.126 66.667 18.11 0.00 0.00 3.01
2884 3131 1.336632 CCTCCTCCAGCTCCTTCCAG 61.337 65.000 0.00 0.00 0.00 3.86
3130 3377 0.244994 GCATATGGTCGCGGATCTCT 59.755 55.000 6.13 0.00 0.00 3.10
3168 3415 3.488090 CGCCGGTTTCGCCTTCTC 61.488 66.667 1.90 0.00 34.25 2.87
3197 3450 2.589159 GAATTCCTCTCCGGCCGC 60.589 66.667 22.85 0.00 0.00 6.53
3315 3568 3.119096 GCTCCGGTTCTTGGACGC 61.119 66.667 0.00 0.00 0.00 5.19
3337 3590 2.647337 TCTTCTTCTTGTTCGACGTCG 58.353 47.619 31.30 31.30 41.45 5.12
3347 3600 2.103042 CGCCGCCCTCTTCTTCTTG 61.103 63.158 0.00 0.00 0.00 3.02
3541 3797 1.403687 CCCCGATCTCCTCCTCCAAC 61.404 65.000 0.00 0.00 0.00 3.77
3542 3798 1.075226 CCCCGATCTCCTCCTCCAA 60.075 63.158 0.00 0.00 0.00 3.53
3595 3851 2.283894 TGCTCCAGGAAGCTCCGA 60.284 61.111 10.99 0.00 42.75 4.55
3697 3953 2.158696 AGCCATGGTATCTTCTCCAAGC 60.159 50.000 14.67 0.00 37.27 4.01
3706 3962 3.713764 ACTTTCAGCTAGCCATGGTATCT 59.286 43.478 14.67 4.49 0.00 1.98
3749 4005 2.078392 CTGTGTGTGTATGCTGCATGA 58.922 47.619 24.59 8.63 0.00 3.07
3750 4006 2.078392 TCTGTGTGTGTATGCTGCATG 58.922 47.619 24.59 5.01 0.00 4.06
3751 4007 2.353323 CTCTGTGTGTGTATGCTGCAT 58.647 47.619 20.18 20.18 0.00 3.96
3752 4008 1.608801 CCTCTGTGTGTGTATGCTGCA 60.609 52.381 4.13 4.13 0.00 4.41
3753 4009 1.081892 CCTCTGTGTGTGTATGCTGC 58.918 55.000 0.00 0.00 0.00 5.25
3754 4010 2.071540 CACCTCTGTGTGTGTATGCTG 58.928 52.381 0.00 0.00 37.72 4.41
3760 4016 0.908910 TTGGTCACCTCTGTGTGTGT 59.091 50.000 0.00 0.00 43.26 3.72
3765 4021 3.743521 TGAAGAATTGGTCACCTCTGTG 58.256 45.455 0.00 0.00 44.18 3.66
3776 4032 2.554032 AGTGCGAAGGTTGAAGAATTGG 59.446 45.455 0.00 0.00 0.00 3.16
3777 4033 3.250762 TCAGTGCGAAGGTTGAAGAATTG 59.749 43.478 0.00 0.00 0.00 2.32
3791 4047 1.069973 CACGAAGCATTTTCAGTGCGA 60.070 47.619 0.00 0.00 46.86 5.10
3792 4048 1.069973 TCACGAAGCATTTTCAGTGCG 60.070 47.619 0.00 0.00 46.86 5.34
3794 4050 4.408993 TGATCACGAAGCATTTTCAGTG 57.591 40.909 0.00 0.00 0.00 3.66
3805 4064 2.897436 TCCAGCAGATTGATCACGAAG 58.103 47.619 0.00 0.00 0.00 3.79
3853 4112 0.395862 ACTGGATCGATCGGAGGTGT 60.396 55.000 18.81 6.71 0.00 4.16
3920 4180 0.820226 TCGATCAGCTCCAACTCCAG 59.180 55.000 0.00 0.00 0.00 3.86
3928 4188 1.363744 CACAACCTTCGATCAGCTCC 58.636 55.000 0.00 0.00 0.00 4.70
3941 4201 2.819608 ACAACCTACATCATGCACAACC 59.180 45.455 0.00 0.00 0.00 3.77
3980 4240 4.153475 ACACATGCTTATTGTACGGTCAAC 59.847 41.667 0.00 0.00 0.00 3.18
3982 4242 3.682377 CACACATGCTTATTGTACGGTCA 59.318 43.478 0.00 0.00 0.00 4.02
4010 4270 2.156098 AGCACCAGTCCACCACCAT 61.156 57.895 0.00 0.00 0.00 3.55
4011 4271 2.772191 AGCACCAGTCCACCACCA 60.772 61.111 0.00 0.00 0.00 4.17
4012 4272 2.281761 CAGCACCAGTCCACCACC 60.282 66.667 0.00 0.00 0.00 4.61
4013 4273 2.281761 CCAGCACCAGTCCACCAC 60.282 66.667 0.00 0.00 0.00 4.16
4014 4274 2.382770 AACCAGCACCAGTCCACCA 61.383 57.895 0.00 0.00 0.00 4.17
4015 4275 1.898574 CAACCAGCACCAGTCCACC 60.899 63.158 0.00 0.00 0.00 4.61
4016 4276 1.898574 CCAACCAGCACCAGTCCAC 60.899 63.158 0.00 0.00 0.00 4.02
4017 4277 1.932156 AACCAACCAGCACCAGTCCA 61.932 55.000 0.00 0.00 0.00 4.02
4018 4278 0.755327 AAACCAACCAGCACCAGTCC 60.755 55.000 0.00 0.00 0.00 3.85
4019 4279 0.385390 CAAACCAACCAGCACCAGTC 59.615 55.000 0.00 0.00 0.00 3.51
4020 4280 1.675720 GCAAACCAACCAGCACCAGT 61.676 55.000 0.00 0.00 0.00 4.00
4021 4281 1.067916 GCAAACCAACCAGCACCAG 59.932 57.895 0.00 0.00 0.00 4.00
4022 4282 1.260538 TTGCAAACCAACCAGCACCA 61.261 50.000 0.00 0.00 36.62 4.17
4031 4291 1.110442 CTGGTCCACTTGCAAACCAA 58.890 50.000 18.77 6.22 41.07 3.67
4063 4323 1.518102 GCATTGCACAACAAACACTCG 59.482 47.619 3.15 0.00 42.86 4.18
4069 4329 4.941657 TCTGTAATGCATTGCACAACAAA 58.058 34.783 24.06 11.47 43.04 2.83
4075 4335 5.352569 ACTCTACTTCTGTAATGCATTGCAC 59.647 40.000 24.06 14.73 43.04 4.57
4087 4347 6.365970 AATTCCATGACACTCTACTTCTGT 57.634 37.500 0.00 0.00 0.00 3.41
4093 4353 4.142600 GGTGCAAATTCCATGACACTCTAC 60.143 45.833 0.00 0.00 0.00 2.59
4094 4354 4.009675 GGTGCAAATTCCATGACACTCTA 58.990 43.478 0.00 0.00 0.00 2.43
4097 4357 1.895131 GGGTGCAAATTCCATGACACT 59.105 47.619 0.00 0.00 0.00 3.55
4104 4364 1.403814 TGAAACGGGTGCAAATTCCA 58.596 45.000 0.00 0.00 0.00 3.53
4105 4365 2.288763 ACATGAAACGGGTGCAAATTCC 60.289 45.455 0.00 0.00 0.00 3.01
4111 4371 2.037381 TGTACTACATGAAACGGGTGCA 59.963 45.455 0.00 0.00 0.00 4.57
4114 4374 6.887626 AAATTTGTACTACATGAAACGGGT 57.112 33.333 0.00 0.00 0.00 5.28
4125 4385 8.724229 ACCCGTCAAGATAAAAATTTGTACTAC 58.276 33.333 0.00 0.00 0.00 2.73
4126 4386 8.851541 ACCCGTCAAGATAAAAATTTGTACTA 57.148 30.769 0.00 0.00 0.00 1.82
4127 4387 7.754851 ACCCGTCAAGATAAAAATTTGTACT 57.245 32.000 0.00 0.00 0.00 2.73
4162 4422 7.875041 AGTTATGCATCATACTTACATCCTCAC 59.125 37.037 0.19 0.00 0.00 3.51
4176 4446 5.052693 ACACCATGGTAGTTATGCATCAT 57.947 39.130 19.28 0.00 0.00 2.45
4179 4449 7.896383 ATTTTACACCATGGTAGTTATGCAT 57.104 32.000 19.28 3.79 0.00 3.96
4181 4451 8.247562 TGAAATTTTACACCATGGTAGTTATGC 58.752 33.333 19.28 3.36 0.00 3.14
4186 4456 7.888021 TGATCTGAAATTTTACACCATGGTAGT 59.112 33.333 19.28 19.39 0.00 2.73
4190 4460 8.830201 TTTTGATCTGAAATTTTACACCATGG 57.170 30.769 11.19 11.19 0.00 3.66
4201 4471 7.147312 TGCACTTCGAATTTTGATCTGAAATT 58.853 30.769 15.57 15.57 38.89 1.82
4202 4472 6.680810 TGCACTTCGAATTTTGATCTGAAAT 58.319 32.000 0.00 0.00 0.00 2.17
4208 4478 8.982685 TCTAGATATGCACTTCGAATTTTGATC 58.017 33.333 0.00 0.00 0.00 2.92
4212 4482 8.946085 TGTTTCTAGATATGCACTTCGAATTTT 58.054 29.630 0.00 0.00 0.00 1.82
4226 4496 9.739276 TCACCTGTGATTTTTGTTTCTAGATAT 57.261 29.630 0.00 0.00 34.14 1.63
4227 4497 8.999431 GTCACCTGTGATTTTTGTTTCTAGATA 58.001 33.333 2.91 0.00 42.18 1.98
4244 4514 2.288825 ACTATTCACACCGTCACCTGTG 60.289 50.000 0.00 0.00 39.38 3.66
4248 4518 2.165845 AGCTACTATTCACACCGTCACC 59.834 50.000 0.00 0.00 0.00 4.02
4251 4521 4.444720 GCAATAGCTACTATTCACACCGTC 59.555 45.833 0.00 0.00 34.83 4.79
4271 4541 0.609681 ATTAAAGGCCCGGTTCGCAA 60.610 50.000 0.00 0.00 0.00 4.85
4297 4567 8.289182 AGCCCTAACCTATACTATGGAAAATT 57.711 34.615 0.00 0.00 0.00 1.82
4319 4589 2.620585 GCATTGTCTTATTGGGAGAGCC 59.379 50.000 0.00 0.00 0.00 4.70
4320 4590 3.065925 GTGCATTGTCTTATTGGGAGAGC 59.934 47.826 0.00 0.00 0.00 4.09
4321 4591 3.629398 GGTGCATTGTCTTATTGGGAGAG 59.371 47.826 0.00 0.00 0.00 3.20
4322 4592 3.266772 AGGTGCATTGTCTTATTGGGAGA 59.733 43.478 0.00 0.00 0.00 3.71
4323 4593 3.379372 CAGGTGCATTGTCTTATTGGGAG 59.621 47.826 0.00 0.00 0.00 4.30
4324 4594 3.245229 ACAGGTGCATTGTCTTATTGGGA 60.245 43.478 0.00 0.00 0.00 4.37
4325 4595 3.091545 ACAGGTGCATTGTCTTATTGGG 58.908 45.455 0.00 0.00 0.00 4.12
4326 4596 3.758023 TCACAGGTGCATTGTCTTATTGG 59.242 43.478 4.05 0.00 0.00 3.16
4327 4597 5.375417 TTCACAGGTGCATTGTCTTATTG 57.625 39.130 4.05 0.00 0.00 1.90
4328 4598 5.536161 AGTTTCACAGGTGCATTGTCTTATT 59.464 36.000 4.05 0.00 0.00 1.40
4329 4599 5.072741 AGTTTCACAGGTGCATTGTCTTAT 58.927 37.500 4.05 0.00 0.00 1.73
4330 4600 4.460263 AGTTTCACAGGTGCATTGTCTTA 58.540 39.130 4.05 0.00 0.00 2.10
4331 4601 3.290710 AGTTTCACAGGTGCATTGTCTT 58.709 40.909 4.05 0.00 0.00 3.01
4332 4602 2.936202 AGTTTCACAGGTGCATTGTCT 58.064 42.857 4.05 0.00 0.00 3.41
4333 4603 4.829064 TTAGTTTCACAGGTGCATTGTC 57.171 40.909 4.05 0.00 0.00 3.18
4334 4604 5.536161 AGAATTAGTTTCACAGGTGCATTGT 59.464 36.000 0.00 0.00 36.75 2.71
4335 4605 6.017400 AGAATTAGTTTCACAGGTGCATTG 57.983 37.500 0.00 0.00 36.75 2.82
4336 4606 6.655078 AAGAATTAGTTTCACAGGTGCATT 57.345 33.333 0.00 0.00 36.75 3.56
4337 4607 7.944729 ATAAGAATTAGTTTCACAGGTGCAT 57.055 32.000 0.00 0.00 36.75 3.96
4338 4608 7.759489 AATAAGAATTAGTTTCACAGGTGCA 57.241 32.000 0.00 0.00 36.75 4.57
4339 4609 8.915654 CAAAATAAGAATTAGTTTCACAGGTGC 58.084 33.333 0.00 0.00 44.42 5.01
4340 4610 8.915654 GCAAAATAAGAATTAGTTTCACAGGTG 58.084 33.333 0.00 0.00 44.42 4.00
4341 4611 8.088365 GGCAAAATAAGAATTAGTTTCACAGGT 58.912 33.333 0.00 0.00 44.42 4.00
4342 4612 8.087750 TGGCAAAATAAGAATTAGTTTCACAGG 58.912 33.333 0.00 0.00 44.42 4.00
4343 4613 9.643693 ATGGCAAAATAAGAATTAGTTTCACAG 57.356 29.630 0.00 0.00 44.42 3.66
4344 4614 9.421806 CATGGCAAAATAAGAATTAGTTTCACA 57.578 29.630 0.00 0.00 44.42 3.58
4345 4615 8.872845 CCATGGCAAAATAAGAATTAGTTTCAC 58.127 33.333 0.00 0.00 44.42 3.18
4346 4616 7.548780 GCCATGGCAAAATAAGAATTAGTTTCA 59.451 33.333 32.08 0.00 44.42 2.69
4347 4617 7.548780 TGCCATGGCAAAATAAGAATTAGTTTC 59.451 33.333 36.95 0.61 45.71 2.78
4365 4635 2.939460 ACGTCTTAATTTGCCATGGC 57.061 45.000 30.54 30.54 42.35 4.40
4366 4636 5.575218 GGTAAAACGTCTTAATTTGCCATGG 59.425 40.000 7.63 7.63 38.30 3.66
4367 4637 6.153067 TGGTAAAACGTCTTAATTTGCCATG 58.847 36.000 13.38 0.00 41.73 3.66
4368 4638 6.334102 TGGTAAAACGTCTTAATTTGCCAT 57.666 33.333 13.38 0.00 41.73 4.40
4369 4639 5.769484 TGGTAAAACGTCTTAATTTGCCA 57.231 34.783 13.38 13.38 43.49 4.92
4370 4640 5.575218 CCATGGTAAAACGTCTTAATTTGCC 59.425 40.000 2.57 9.14 38.71 4.52
4371 4641 5.061684 GCCATGGTAAAACGTCTTAATTTGC 59.938 40.000 14.67 0.00 0.00 3.68
4372 4642 6.153067 TGCCATGGTAAAACGTCTTAATTTG 58.847 36.000 14.67 0.00 0.00 2.32
4373 4643 6.334102 TGCCATGGTAAAACGTCTTAATTT 57.666 33.333 14.67 0.00 0.00 1.82
4374 4644 5.968528 TGCCATGGTAAAACGTCTTAATT 57.031 34.783 14.67 0.00 0.00 1.40
4375 4645 5.968528 TTGCCATGGTAAAACGTCTTAAT 57.031 34.783 13.43 0.00 0.00 1.40
4376 4646 5.769484 TTTGCCATGGTAAAACGTCTTAA 57.231 34.783 23.79 0.00 0.00 1.85
4377 4647 5.968528 ATTTGCCATGGTAAAACGTCTTA 57.031 34.783 28.47 6.92 33.78 2.10
4378 4648 4.864704 ATTTGCCATGGTAAAACGTCTT 57.135 36.364 28.47 11.02 33.78 3.01
4379 4649 4.864704 AATTTGCCATGGTAAAACGTCT 57.135 36.364 28.47 11.71 33.78 4.18
4380 4650 7.409465 TTTAAATTTGCCATGGTAAAACGTC 57.591 32.000 28.47 3.49 33.78 4.34
4381 4651 7.787725 TTTTAAATTTGCCATGGTAAAACGT 57.212 28.000 28.47 18.99 33.78 3.99
4382 4652 8.286097 ACATTTTAAATTTGCCATGGTAAAACG 58.714 29.630 28.47 16.73 33.78 3.60
4383 4653 9.958234 AACATTTTAAATTTGCCATGGTAAAAC 57.042 25.926 28.47 5.73 33.78 2.43
4386 4656 9.956720 CAAAACATTTTAAATTTGCCATGGTAA 57.043 25.926 11.68 11.68 0.00 2.85
4395 4665 7.335861 GCCATGGCAAAACATTTTAAATTTG 57.664 32.000 32.08 7.38 41.49 2.32
4412 4682 0.681175 AACTCCAAACTTGCCATGGC 59.319 50.000 30.54 30.54 42.35 4.40
4413 4683 3.473923 AAAACTCCAAACTTGCCATGG 57.526 42.857 7.63 7.63 35.49 3.66
4414 4684 6.146021 GTGAATAAAACTCCAAACTTGCCATG 59.854 38.462 0.00 0.00 0.00 3.66
4415 4685 6.183360 TGTGAATAAAACTCCAAACTTGCCAT 60.183 34.615 0.00 0.00 0.00 4.40
4416 4686 5.127845 TGTGAATAAAACTCCAAACTTGCCA 59.872 36.000 0.00 0.00 0.00 4.92
4417 4687 5.462068 GTGTGAATAAAACTCCAAACTTGCC 59.538 40.000 0.00 0.00 0.00 4.52
4418 4688 6.273071 AGTGTGAATAAAACTCCAAACTTGC 58.727 36.000 0.00 0.00 0.00 4.01
4419 4689 7.914537 GAGTGTGAATAAAACTCCAAACTTG 57.085 36.000 0.00 0.00 35.36 3.16
4427 4697 8.573035 TGGTTAATTGGAGTGTGAATAAAACTC 58.427 33.333 0.00 0.00 39.70 3.01
4428 4698 8.472007 TGGTTAATTGGAGTGTGAATAAAACT 57.528 30.769 0.00 0.00 0.00 2.66
4429 4699 9.139174 CATGGTTAATTGGAGTGTGAATAAAAC 57.861 33.333 0.00 0.00 0.00 2.43
4430 4700 8.310382 CCATGGTTAATTGGAGTGTGAATAAAA 58.690 33.333 2.57 0.00 34.81 1.52
4431 4701 7.578571 GCCATGGTTAATTGGAGTGTGAATAAA 60.579 37.037 14.67 0.00 34.81 1.40
4432 4702 6.127479 GCCATGGTTAATTGGAGTGTGAATAA 60.127 38.462 14.67 0.00 34.81 1.40
4433 4703 5.359576 GCCATGGTTAATTGGAGTGTGAATA 59.640 40.000 14.67 0.00 34.81 1.75
4434 4704 4.160252 GCCATGGTTAATTGGAGTGTGAAT 59.840 41.667 14.67 0.00 34.81 2.57
4435 4705 3.509575 GCCATGGTTAATTGGAGTGTGAA 59.490 43.478 14.67 0.00 34.81 3.18
4436 4706 3.088532 GCCATGGTTAATTGGAGTGTGA 58.911 45.455 14.67 0.00 34.81 3.58
4437 4707 2.824936 TGCCATGGTTAATTGGAGTGTG 59.175 45.455 14.67 0.00 34.81 3.82
4438 4708 3.168035 TGCCATGGTTAATTGGAGTGT 57.832 42.857 14.67 0.00 34.81 3.55
4439 4709 4.741321 ATTGCCATGGTTAATTGGAGTG 57.259 40.909 14.67 0.00 34.81 3.51
4440 4710 6.865834 TTTATTGCCATGGTTAATTGGAGT 57.134 33.333 14.67 0.00 34.81 3.85
4441 4711 7.330262 ACTTTTATTGCCATGGTTAATTGGAG 58.670 34.615 14.67 13.31 34.81 3.86
4442 4712 7.251321 ACTTTTATTGCCATGGTTAATTGGA 57.749 32.000 14.67 2.72 34.81 3.53
4443 4713 9.442047 TTTACTTTTATTGCCATGGTTAATTGG 57.558 29.630 14.67 8.04 36.03 3.16
4468 4738 6.138391 ACCTAAATTCCCATGGCAATTTTT 57.862 33.333 27.29 11.25 34.68 1.94
4469 4739 5.777526 ACCTAAATTCCCATGGCAATTTT 57.222 34.783 27.29 16.98 34.68 1.82
4470 4740 6.882768 TTACCTAAATTCCCATGGCAATTT 57.117 33.333 25.83 25.83 36.43 1.82
4471 4741 6.882768 TTTACCTAAATTCCCATGGCAATT 57.117 33.333 7.90 7.90 0.00 2.32
4472 4742 7.450323 AATTTACCTAAATTCCCATGGCAAT 57.550 32.000 6.09 0.00 40.75 3.56
4473 4743 6.882768 AATTTACCTAAATTCCCATGGCAA 57.117 33.333 6.09 0.00 40.75 4.52
4474 4744 6.882768 AAATTTACCTAAATTCCCATGGCA 57.117 33.333 6.09 0.00 43.06 4.92
4475 4745 7.787028 TGTAAATTTACCTAAATTCCCATGGC 58.213 34.615 22.47 0.00 43.06 4.40
4502 4772 9.292195 GCCATAGCTAATTTACCCTTATTAACA 57.708 33.333 0.00 0.00 35.50 2.41
4503 4773 9.292195 TGCCATAGCTAATTTACCCTTATTAAC 57.708 33.333 0.00 0.00 40.80 2.01
4504 4774 9.869667 TTGCCATAGCTAATTTACCCTTATTAA 57.130 29.630 0.00 0.00 40.80 1.40
4505 4775 9.869667 TTTGCCATAGCTAATTTACCCTTATTA 57.130 29.630 0.00 0.00 40.80 0.98
4506 4776 8.776061 TTTGCCATAGCTAATTTACCCTTATT 57.224 30.769 0.00 0.00 40.80 1.40
4507 4777 8.956446 ATTTGCCATAGCTAATTTACCCTTAT 57.044 30.769 0.00 0.00 40.85 1.73
4508 4778 9.869667 TTATTTGCCATAGCTAATTTACCCTTA 57.130 29.630 0.00 0.00 40.85 2.69
4509 4779 8.776061 TTATTTGCCATAGCTAATTTACCCTT 57.224 30.769 0.00 0.00 40.85 3.95
4510 4780 8.776061 TTTATTTGCCATAGCTAATTTACCCT 57.224 30.769 0.00 0.00 40.85 4.34
4511 4781 9.825109 TTTTTATTTGCCATAGCTAATTTACCC 57.175 29.630 0.00 0.00 40.85 3.69
4524 4794 8.854117 TGGCAATTTTTACTTTTTATTTGCCAT 58.146 25.926 18.96 0.00 40.63 4.40
4525 4795 8.225603 TGGCAATTTTTACTTTTTATTTGCCA 57.774 26.923 18.96 18.96 42.82 4.92
4526 4796 9.127006 CATGGCAATTTTTACTTTTTATTTGCC 57.873 29.630 14.64 14.64 36.80 4.52
4527 4797 9.127006 CCATGGCAATTTTTACTTTTTATTTGC 57.873 29.630 0.00 0.00 0.00 3.68
4528 4798 9.127006 GCCATGGCAATTTTTACTTTTTATTTG 57.873 29.630 32.08 0.00 41.49 2.32
4547 4817 8.069574 GCAATATTTAACTTTTATTGCCATGGC 58.930 33.333 30.54 30.54 46.34 4.40
4554 4824 9.054922 CCCCATGGCAATATTTAACTTTTATTG 57.945 33.333 6.09 0.00 36.73 1.90
4555 4825 8.997734 TCCCCATGGCAATATTTAACTTTTATT 58.002 29.630 6.09 0.00 0.00 1.40
4556 4826 8.560124 TCCCCATGGCAATATTTAACTTTTAT 57.440 30.769 6.09 0.00 0.00 1.40
4557 4827 7.979786 TCCCCATGGCAATATTTAACTTTTA 57.020 32.000 6.09 0.00 0.00 1.52
4558 4828 6.882768 TCCCCATGGCAATATTTAACTTTT 57.117 33.333 6.09 0.00 0.00 2.27
4559 4829 7.450323 AATCCCCATGGCAATATTTAACTTT 57.550 32.000 6.09 0.00 0.00 2.66
4560 4830 7.450323 AAATCCCCATGGCAATATTTAACTT 57.550 32.000 6.09 0.00 0.00 2.66
4561 4831 7.789349 ACTAAATCCCCATGGCAATATTTAACT 59.211 33.333 6.09 0.00 0.00 2.24
4562 4832 7.962441 ACTAAATCCCCATGGCAATATTTAAC 58.038 34.615 6.09 0.00 0.00 2.01
4563 4833 8.560124 AACTAAATCCCCATGGCAATATTTAA 57.440 30.769 6.09 0.00 0.00 1.52
4564 4834 9.661954 TTAACTAAATCCCCATGGCAATATTTA 57.338 29.630 6.09 11.41 0.00 1.40
4565 4835 8.560124 TTAACTAAATCCCCATGGCAATATTT 57.440 30.769 6.09 10.90 0.00 1.40
4566 4836 8.560124 TTTAACTAAATCCCCATGGCAATATT 57.440 30.769 6.09 0.00 0.00 1.28
4567 4837 8.740616 ATTTAACTAAATCCCCATGGCAATAT 57.259 30.769 6.09 0.00 30.50 1.28
4568 4838 8.560124 AATTTAACTAAATCCCCATGGCAATA 57.440 30.769 6.09 0.00 35.00 1.90
4569 4839 7.450323 AATTTAACTAAATCCCCATGGCAAT 57.550 32.000 6.09 0.00 35.00 3.56
4570 4840 6.406400 CGAATTTAACTAAATCCCCATGGCAA 60.406 38.462 6.09 0.00 35.00 4.52
4571 4841 5.068460 CGAATTTAACTAAATCCCCATGGCA 59.932 40.000 6.09 0.00 35.00 4.92
4572 4842 5.528870 CGAATTTAACTAAATCCCCATGGC 58.471 41.667 6.09 0.00 35.00 4.40
4573 4843 5.508994 GGCGAATTTAACTAAATCCCCATGG 60.509 44.000 4.14 4.14 35.00 3.66
4574 4844 5.301805 AGGCGAATTTAACTAAATCCCCATG 59.698 40.000 0.00 0.00 35.00 3.66
4587 4857 7.393796 TGACCCTTATTAACAAGGCGAATTTAA 59.606 33.333 7.03 0.00 43.30 1.52
4590 4860 5.258051 TGACCCTTATTAACAAGGCGAATT 58.742 37.500 7.03 0.00 43.30 2.17
4592 4862 4.289238 TGACCCTTATTAACAAGGCGAA 57.711 40.909 7.03 0.00 43.30 4.70
4594 4864 5.576447 AATTGACCCTTATTAACAAGGCG 57.424 39.130 7.03 3.53 43.30 5.52
4596 4866 6.605594 TGGCTAATTGACCCTTATTAACAAGG 59.394 38.462 5.48 5.48 44.11 3.61
4598 4868 7.069331 CCATGGCTAATTGACCCTTATTAACAA 59.931 37.037 0.00 0.00 0.00 2.83
4617 4887 9.904198 AAGTTTTAATATTTATTTGCCATGGCT 57.096 25.926 35.53 19.66 42.51 4.75
4618 4888 9.934190 CAAGTTTTAATATTTATTTGCCATGGC 57.066 29.630 30.54 30.54 42.35 4.40
4695 4968 6.549364 CCATGGCTAATTGACCCTTATTACAA 59.451 38.462 0.00 0.00 0.00 2.41
4740 5014 7.821846 GGCAAATTGAACTTTTATTACCATGGA 59.178 33.333 21.47 0.00 0.00 3.41
4747 5021 9.261035 TCCCTATGGCAAATTGAACTTTTATTA 57.739 29.630 0.00 0.00 0.00 0.98
4849 5125 5.130311 GCAAATTTACCTAAATCCCCATGGT 59.870 40.000 11.73 0.00 35.00 3.55
4901 5177 9.369904 CATGGCAAGTTTTACTATTTATTTGCT 57.630 29.630 0.00 0.00 39.52 3.91
4975 5252 8.735692 ATTCTCCAAAACAACACAAAATGATT 57.264 26.923 0.00 0.00 0.00 2.57
4976 5253 8.735692 AATTCTCCAAAACAACACAAAATGAT 57.264 26.923 0.00 0.00 0.00 2.45
5024 5347 5.938438 GCCATGGCAACTTTTGATTTTTA 57.062 34.783 32.08 0.00 41.49 1.52
5070 5394 5.007034 TCATGGCAAATTTAGTTCTCGGAA 58.993 37.500 0.00 0.00 0.00 4.30
5119 5443 5.163764 CGCATCATAGCAAACTTGTTTCCTA 60.164 40.000 0.14 0.14 0.00 2.94
5125 5449 5.181245 AGTTTACGCATCATAGCAAACTTGT 59.819 36.000 0.00 0.00 37.41 3.16
5215 5540 6.570764 GCAAATTTACCGTTTTCTACCATGGA 60.571 38.462 21.47 0.67 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.