Multiple sequence alignment - TraesCS5D01G451700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G451700 chr5D 100.000 2720 0 0 1 2720 499865824 499863105 0.000000e+00 5024.0
1 TraesCS5D01G451700 chr5D 80.063 1580 254 36 666 2214 42075981 42077530 0.000000e+00 1116.0
2 TraesCS5D01G451700 chr5D 93.168 161 10 1 1 161 507175987 507176146 4.530000e-58 235.0
3 TraesCS5D01G451700 chr5D 95.489 133 4 2 2294 2424 444768406 444768538 7.630000e-51 211.0
4 TraesCS5D01G451700 chr5D 97.458 118 3 0 2307 2424 30459071 30459188 4.590000e-48 202.0
5 TraesCS5D01G451700 chr5D 86.420 81 7 4 357 437 398899533 398899609 4.830000e-13 86.1
6 TraesCS5D01G451700 chr5D 100.000 33 0 0 365 397 28480034 28480002 8.130000e-06 62.1
7 TraesCS5D01G451700 chr5D 100.000 32 0 0 365 396 332447744 332447775 2.920000e-05 60.2
8 TraesCS5D01G451700 chr5B 93.684 1884 67 13 467 2312 621238574 621236705 0.000000e+00 2772.0
9 TraesCS5D01G451700 chr5B 86.062 1643 194 16 693 2309 556795809 556794176 0.000000e+00 1733.0
10 TraesCS5D01G451700 chr5B 95.681 301 10 1 2423 2720 621236709 621236409 5.270000e-132 481.0
11 TraesCS5D01G451700 chr5B 92.105 152 9 3 213 363 621238723 621238574 7.630000e-51 211.0
12 TraesCS5D01G451700 chr5B 88.889 135 13 2 2588 2720 556624731 556624597 6.030000e-37 165.0
13 TraesCS5D01G451700 chr5B 85.882 85 10 2 2404 2487 556624980 556624897 3.730000e-14 89.8
14 TraesCS5D01G451700 chr6B 84.879 1574 201 13 766 2313 15381521 15379959 0.000000e+00 1554.0
15 TraesCS5D01G451700 chr6B 80.209 1531 247 37 811 2312 15715152 15713649 0.000000e+00 1098.0
16 TraesCS5D01G451700 chr6B 78.903 1313 226 21 870 2169 15216729 15215455 0.000000e+00 843.0
17 TraesCS5D01G451700 chr6B 98.319 119 2 0 2306 2424 128924769 128924887 2.740000e-50 209.0
18 TraesCS5D01G451700 chr6B 94.531 128 7 0 2307 2434 631288177 631288304 5.940000e-47 198.0
19 TraesCS5D01G451700 chr6B 90.370 135 11 2 2588 2720 16269167 16269301 2.780000e-40 176.0
20 TraesCS5D01G451700 chr6B 88.636 132 11 3 2589 2720 670591018 670590891 1.010000e-34 158.0
21 TraesCS5D01G451700 chr6B 88.235 85 8 2 2404 2487 16268917 16269000 1.720000e-17 100.0
22 TraesCS5D01G451700 chr6B 89.744 78 6 2 2404 2480 15233273 15233197 6.200000e-17 99.0
23 TraesCS5D01G451700 chr1B 84.496 1606 193 24 744 2313 662037311 662038896 0.000000e+00 1535.0
24 TraesCS5D01G451700 chr1B 79.688 1600 253 28 742 2304 662153020 662154584 0.000000e+00 1088.0
25 TraesCS5D01G451700 chr6A 82.877 1606 218 26 742 2313 9461445 9463027 0.000000e+00 1389.0
26 TraesCS5D01G451700 chr6A 83.163 1467 197 21 871 2309 9355310 9356754 0.000000e+00 1295.0
27 TraesCS5D01G451700 chr6A 78.244 1025 170 29 750 1745 9364602 9365602 2.320000e-170 608.0
28 TraesCS5D01G451700 chr6A 75.865 1127 208 30 744 1835 9336032 9337129 1.440000e-142 516.0
29 TraesCS5D01G451700 chr6A 88.732 71 6 2 365 433 301951364 301951294 4.830000e-13 86.1
30 TraesCS5D01G451700 chr6A 100.000 35 0 0 363 397 25691351 25691317 6.290000e-07 65.8
31 TraesCS5D01G451700 chr6D 81.658 1701 237 45 649 2309 33894942 33896607 0.000000e+00 1343.0
32 TraesCS5D01G451700 chr6D 81.615 1610 228 35 742 2312 8552807 8551227 0.000000e+00 1271.0
33 TraesCS5D01G451700 chr6D 82.169 1475 208 27 870 2313 8987360 8988810 0.000000e+00 1216.0
34 TraesCS5D01G451700 chr6D 84.396 1019 137 13 1294 2309 8915622 8916621 0.000000e+00 981.0
35 TraesCS5D01G451700 chr6D 79.316 1199 185 36 741 1904 8967571 8968741 0.000000e+00 782.0
36 TraesCS5D01G451700 chr6D 75.593 1180 238 21 743 1900 8899518 8900669 3.080000e-149 538.0
37 TraesCS5D01G451700 chr6D 92.683 164 9 3 1 164 94786031 94785871 1.630000e-57 233.0
38 TraesCS5D01G451700 chr6D 91.304 161 14 0 2558 2718 8916834 8916994 1.270000e-53 220.0
39 TraesCS5D01G451700 chr6D 99.145 117 1 0 2308 2424 336183812 336183928 7.630000e-51 211.0
40 TraesCS5D01G451700 chr6D 96.694 121 3 1 2308 2428 471326716 471326597 1.650000e-47 200.0
41 TraesCS5D01G451700 chr6D 92.453 53 4 0 617 669 8402595 8402543 2.900000e-10 76.8
42 TraesCS5D01G451700 chr6D 92.453 53 4 0 617 669 8893879 8893931 2.900000e-10 76.8
43 TraesCS5D01G451700 chr2B 81.086 1639 216 44 705 2306 54044054 54042473 0.000000e+00 1223.0
44 TraesCS5D01G451700 chr2B 87.591 137 14 2 2584 2720 709568046 709567913 3.630000e-34 156.0
45 TraesCS5D01G451700 chr2B 100.000 28 0 0 409 436 123104689 123104662 5.000000e-03 52.8
46 TraesCS5D01G451700 chrUn 82.058 1215 185 21 988 2194 95438112 95439301 0.000000e+00 1005.0
47 TraesCS5D01G451700 chrUn 91.613 155 11 2 3 156 348118947 348118794 2.120000e-51 213.0
48 TraesCS5D01G451700 chr7B 82.530 830 114 9 750 1564 32348068 32347255 0.000000e+00 701.0
49 TraesCS5D01G451700 chr7B 95.000 40 2 0 365 404 75778841 75778880 2.260000e-06 63.9
50 TraesCS5D01G451700 chr5A 87.791 516 23 13 566 1051 624205448 624204943 3.930000e-158 568.0
51 TraesCS5D01G451700 chr5A 96.333 300 8 3 2423 2720 624204151 624203853 8.750000e-135 490.0
52 TraesCS5D01G451700 chr5A 84.483 116 8 7 203 315 624205745 624205637 3.700000e-19 106.0
53 TraesCS5D01G451700 chr5A 93.478 46 1 2 360 404 135141221 135141265 1.750000e-07 67.6
54 TraesCS5D01G451700 chr5A 100.000 32 0 0 402 433 27691455 27691424 2.920000e-05 60.2
55 TraesCS5D01G451700 chr1D 95.455 154 7 0 7 160 203317917 203317764 2.090000e-61 246.0
56 TraesCS5D01G451700 chr1D 93.333 45 2 1 358 401 218898539 218898583 6.290000e-07 65.8
57 TraesCS5D01G451700 chr1D 97.143 35 1 0 365 399 47957707 47957673 2.920000e-05 60.2
58 TraesCS5D01G451700 chr4D 93.038 158 10 1 1 158 428578514 428578358 2.110000e-56 230.0
59 TraesCS5D01G451700 chr3A 93.038 158 10 1 1 157 522058237 522058394 2.110000e-56 230.0
60 TraesCS5D01G451700 chr2D 90.419 167 15 1 1 167 574565200 574565035 4.560000e-53 219.0
61 TraesCS5D01G451700 chr2D 93.939 132 5 1 2304 2432 70464003 70463872 2.140000e-46 196.0
62 TraesCS5D01G451700 chr7A 91.083 157 14 0 1 157 92466504 92466660 2.120000e-51 213.0
63 TraesCS5D01G451700 chr4A 91.558 154 12 1 1 154 611261028 611261180 7.630000e-51 211.0
64 TraesCS5D01G451700 chr7D 97.521 121 2 1 2305 2424 380627579 380627699 3.550000e-49 206.0
65 TraesCS5D01G451700 chr3D 96.721 122 3 1 2304 2424 7308052 7308173 4.590000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G451700 chr5D 499863105 499865824 2719 True 5024.000000 5024 100.000000 1 2720 1 chr5D.!!$R2 2719
1 TraesCS5D01G451700 chr5D 42075981 42077530 1549 False 1116.000000 1116 80.063000 666 2214 1 chr5D.!!$F2 1548
2 TraesCS5D01G451700 chr5B 556794176 556795809 1633 True 1733.000000 1733 86.062000 693 2309 1 chr5B.!!$R1 1616
3 TraesCS5D01G451700 chr5B 621236409 621238723 2314 True 1154.666667 2772 93.823333 213 2720 3 chr5B.!!$R3 2507
4 TraesCS5D01G451700 chr6B 15379959 15381521 1562 True 1554.000000 1554 84.879000 766 2313 1 chr6B.!!$R3 1547
5 TraesCS5D01G451700 chr6B 15713649 15715152 1503 True 1098.000000 1098 80.209000 811 2312 1 chr6B.!!$R4 1501
6 TraesCS5D01G451700 chr6B 15215455 15216729 1274 True 843.000000 843 78.903000 870 2169 1 chr6B.!!$R1 1299
7 TraesCS5D01G451700 chr1B 662037311 662038896 1585 False 1535.000000 1535 84.496000 744 2313 1 chr1B.!!$F1 1569
8 TraesCS5D01G451700 chr1B 662153020 662154584 1564 False 1088.000000 1088 79.688000 742 2304 1 chr1B.!!$F2 1562
9 TraesCS5D01G451700 chr6A 9461445 9463027 1582 False 1389.000000 1389 82.877000 742 2313 1 chr6A.!!$F4 1571
10 TraesCS5D01G451700 chr6A 9355310 9356754 1444 False 1295.000000 1295 83.163000 871 2309 1 chr6A.!!$F2 1438
11 TraesCS5D01G451700 chr6A 9364602 9365602 1000 False 608.000000 608 78.244000 750 1745 1 chr6A.!!$F3 995
12 TraesCS5D01G451700 chr6A 9336032 9337129 1097 False 516.000000 516 75.865000 744 1835 1 chr6A.!!$F1 1091
13 TraesCS5D01G451700 chr6D 33894942 33896607 1665 False 1343.000000 1343 81.658000 649 2309 1 chr6D.!!$F5 1660
14 TraesCS5D01G451700 chr6D 8551227 8552807 1580 True 1271.000000 1271 81.615000 742 2312 1 chr6D.!!$R2 1570
15 TraesCS5D01G451700 chr6D 8987360 8988810 1450 False 1216.000000 1216 82.169000 870 2313 1 chr6D.!!$F4 1443
16 TraesCS5D01G451700 chr6D 8967571 8968741 1170 False 782.000000 782 79.316000 741 1904 1 chr6D.!!$F3 1163
17 TraesCS5D01G451700 chr6D 8915622 8916994 1372 False 600.500000 981 87.850000 1294 2718 2 chr6D.!!$F7 1424
18 TraesCS5D01G451700 chr6D 8899518 8900669 1151 False 538.000000 538 75.593000 743 1900 1 chr6D.!!$F2 1157
19 TraesCS5D01G451700 chr2B 54042473 54044054 1581 True 1223.000000 1223 81.086000 705 2306 1 chr2B.!!$R1 1601
20 TraesCS5D01G451700 chrUn 95438112 95439301 1189 False 1005.000000 1005 82.058000 988 2194 1 chrUn.!!$F1 1206
21 TraesCS5D01G451700 chr7B 32347255 32348068 813 True 701.000000 701 82.530000 750 1564 1 chr7B.!!$R1 814
22 TraesCS5D01G451700 chr5A 624203853 624205745 1892 True 388.000000 568 89.535667 203 2720 3 chr5A.!!$R2 2517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.034089 AAGCACCTATCCCAAGCACC 60.034 55.0 0.0 0.0 0.00 5.01 F
137 138 0.034089 GCACCTATCCCAAGCACCTT 60.034 55.0 0.0 0.0 0.00 3.50 F
139 140 0.034089 ACCTATCCCAAGCACCTTGC 60.034 55.0 0.0 0.0 45.46 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1533 1.683011 GGGTTGGTGGTGATCATCCTG 60.683 57.143 2.86 0.0 0.0 3.86 R
1706 1898 6.257193 CCTTGAGAAACTTTACAACGTAGTGT 59.743 38.462 0.00 0.0 45.0 3.55 R
2010 2210 9.631452 AGTGATGACATTACATATCAGTATTCG 57.369 33.333 12.40 0.0 32.9 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.864628 AAATCGAGTTCTTCTTAAGCACC 57.135 39.130 0.00 0.00 0.00 5.01
25 26 2.942710 TCGAGTTCTTCTTAAGCACCG 58.057 47.619 0.00 0.00 0.00 4.94
26 27 1.993370 CGAGTTCTTCTTAAGCACCGG 59.007 52.381 0.00 0.00 0.00 5.28
27 28 2.609737 CGAGTTCTTCTTAAGCACCGGT 60.610 50.000 0.00 0.00 0.00 5.28
28 29 2.737252 GAGTTCTTCTTAAGCACCGGTG 59.263 50.000 30.66 30.66 0.00 4.94
43 44 5.209818 CACCGGTGCTTATTTCTATAGGA 57.790 43.478 24.02 0.00 0.00 2.94
44 45 4.989168 CACCGGTGCTTATTTCTATAGGAC 59.011 45.833 24.02 0.00 0.00 3.85
45 46 4.652421 ACCGGTGCTTATTTCTATAGGACA 59.348 41.667 6.12 0.00 0.00 4.02
46 47 5.221461 ACCGGTGCTTATTTCTATAGGACAG 60.221 44.000 6.12 0.00 0.00 3.51
47 48 5.010719 CCGGTGCTTATTTCTATAGGACAGA 59.989 44.000 0.00 0.00 0.00 3.41
48 49 5.921408 CGGTGCTTATTTCTATAGGACAGAC 59.079 44.000 0.00 0.00 0.00 3.51
49 50 5.921408 GGTGCTTATTTCTATAGGACAGACG 59.079 44.000 0.00 0.00 0.00 4.18
50 51 5.402867 GTGCTTATTTCTATAGGACAGACGC 59.597 44.000 0.00 0.00 0.00 5.19
51 52 5.302059 TGCTTATTTCTATAGGACAGACGCT 59.698 40.000 0.00 0.00 0.00 5.07
52 53 6.183360 TGCTTATTTCTATAGGACAGACGCTT 60.183 38.462 0.00 0.00 0.00 4.68
53 54 7.013942 TGCTTATTTCTATAGGACAGACGCTTA 59.986 37.037 0.00 0.00 0.00 3.09
54 55 7.866393 GCTTATTTCTATAGGACAGACGCTTAA 59.134 37.037 0.00 0.00 0.00 1.85
55 56 9.915629 CTTATTTCTATAGGACAGACGCTTAAT 57.084 33.333 0.00 0.00 0.00 1.40
59 60 9.745880 TTTCTATAGGACAGACGCTTAATTAAG 57.254 33.333 19.08 19.08 36.40 1.85
72 73 5.272283 CTTAATTAAGCGTCTACCCTCCA 57.728 43.478 12.15 0.00 0.00 3.86
73 74 3.538634 AATTAAGCGTCTACCCTCCAC 57.461 47.619 0.00 0.00 0.00 4.02
74 75 1.927487 TTAAGCGTCTACCCTCCACA 58.073 50.000 0.00 0.00 0.00 4.17
75 76 1.927487 TAAGCGTCTACCCTCCACAA 58.073 50.000 0.00 0.00 0.00 3.33
76 77 1.053424 AAGCGTCTACCCTCCACAAA 58.947 50.000 0.00 0.00 0.00 2.83
77 78 1.276622 AGCGTCTACCCTCCACAAAT 58.723 50.000 0.00 0.00 0.00 2.32
78 79 2.463752 AGCGTCTACCCTCCACAAATA 58.536 47.619 0.00 0.00 0.00 1.40
79 80 2.835764 AGCGTCTACCCTCCACAAATAA 59.164 45.455 0.00 0.00 0.00 1.40
80 81 3.118738 AGCGTCTACCCTCCACAAATAAG 60.119 47.826 0.00 0.00 0.00 1.73
81 82 3.195661 CGTCTACCCTCCACAAATAAGC 58.804 50.000 0.00 0.00 0.00 3.09
82 83 3.369052 CGTCTACCCTCCACAAATAAGCA 60.369 47.826 0.00 0.00 0.00 3.91
83 84 3.939592 GTCTACCCTCCACAAATAAGCAC 59.060 47.826 0.00 0.00 0.00 4.40
84 85 2.215942 ACCCTCCACAAATAAGCACC 57.784 50.000 0.00 0.00 0.00 5.01
85 86 1.094785 CCCTCCACAAATAAGCACCG 58.905 55.000 0.00 0.00 0.00 4.94
86 87 1.094785 CCTCCACAAATAAGCACCGG 58.905 55.000 0.00 0.00 0.00 5.28
87 88 1.613255 CCTCCACAAATAAGCACCGGT 60.613 52.381 0.00 0.00 0.00 5.28
88 89 1.468520 CTCCACAAATAAGCACCGGTG 59.531 52.381 30.66 30.66 0.00 4.94
122 123 6.819397 AACTGGTTTATTTCTCTAAGCACC 57.181 37.500 0.00 0.00 0.00 5.01
123 124 6.128138 ACTGGTTTATTTCTCTAAGCACCT 57.872 37.500 0.00 0.00 0.00 4.00
124 125 7.253905 ACTGGTTTATTTCTCTAAGCACCTA 57.746 36.000 0.00 0.00 0.00 3.08
125 126 7.862675 ACTGGTTTATTTCTCTAAGCACCTAT 58.137 34.615 0.00 0.00 0.00 2.57
126 127 7.988028 ACTGGTTTATTTCTCTAAGCACCTATC 59.012 37.037 0.00 0.00 0.00 2.08
127 128 7.280356 TGGTTTATTTCTCTAAGCACCTATCC 58.720 38.462 0.00 0.00 0.00 2.59
128 129 6.711194 GGTTTATTTCTCTAAGCACCTATCCC 59.289 42.308 0.00 0.00 0.00 3.85
129 130 7.280356 GTTTATTTCTCTAAGCACCTATCCCA 58.720 38.462 0.00 0.00 0.00 4.37
130 131 5.975988 ATTTCTCTAAGCACCTATCCCAA 57.024 39.130 0.00 0.00 0.00 4.12
131 132 5.359194 TTTCTCTAAGCACCTATCCCAAG 57.641 43.478 0.00 0.00 0.00 3.61
132 133 2.700897 TCTCTAAGCACCTATCCCAAGC 59.299 50.000 0.00 0.00 0.00 4.01
133 134 2.435805 CTCTAAGCACCTATCCCAAGCA 59.564 50.000 0.00 0.00 0.00 3.91
134 135 2.170607 TCTAAGCACCTATCCCAAGCAC 59.829 50.000 0.00 0.00 0.00 4.40
135 136 0.034089 AAGCACCTATCCCAAGCACC 60.034 55.000 0.00 0.00 0.00 5.01
136 137 0.916358 AGCACCTATCCCAAGCACCT 60.916 55.000 0.00 0.00 0.00 4.00
137 138 0.034089 GCACCTATCCCAAGCACCTT 60.034 55.000 0.00 0.00 0.00 3.50
138 139 1.755179 CACCTATCCCAAGCACCTTG 58.245 55.000 0.00 0.00 40.75 3.61
139 140 0.034089 ACCTATCCCAAGCACCTTGC 60.034 55.000 0.00 0.00 45.46 4.01
150 151 0.527565 GCACCTTGCATTGTACAGGG 59.472 55.000 4.92 0.00 44.26 4.45
151 152 0.527565 CACCTTGCATTGTACAGGGC 59.472 55.000 12.42 12.42 37.79 5.19
152 153 0.611896 ACCTTGCATTGTACAGGGCC 60.612 55.000 15.55 0.00 37.79 5.80
153 154 0.323725 CCTTGCATTGTACAGGGCCT 60.324 55.000 15.55 0.00 0.00 5.19
154 155 1.064758 CCTTGCATTGTACAGGGCCTA 60.065 52.381 5.28 0.00 0.00 3.93
155 156 2.620367 CCTTGCATTGTACAGGGCCTAA 60.620 50.000 5.28 0.00 0.00 2.69
156 157 2.418368 TGCATTGTACAGGGCCTAAG 57.582 50.000 5.28 0.00 0.00 2.18
157 158 1.064758 TGCATTGTACAGGGCCTAAGG 60.065 52.381 5.28 0.00 0.00 2.69
158 159 1.211949 GCATTGTACAGGGCCTAAGGA 59.788 52.381 5.28 0.00 0.00 3.36
159 160 2.356741 GCATTGTACAGGGCCTAAGGAA 60.357 50.000 5.28 0.00 0.00 3.36
160 161 3.545703 CATTGTACAGGGCCTAAGGAAG 58.454 50.000 5.28 0.00 0.00 3.46
161 162 2.634639 TGTACAGGGCCTAAGGAAGA 57.365 50.000 5.28 0.00 0.00 2.87
162 163 2.185387 TGTACAGGGCCTAAGGAAGAC 58.815 52.381 5.28 0.00 0.00 3.01
163 164 2.185387 GTACAGGGCCTAAGGAAGACA 58.815 52.381 5.28 0.00 0.00 3.41
164 165 1.742308 ACAGGGCCTAAGGAAGACAA 58.258 50.000 5.28 0.00 0.00 3.18
165 166 2.062636 ACAGGGCCTAAGGAAGACAAA 58.937 47.619 5.28 0.00 0.00 2.83
166 167 2.649816 ACAGGGCCTAAGGAAGACAAAT 59.350 45.455 5.28 0.00 0.00 2.32
167 168 3.282885 CAGGGCCTAAGGAAGACAAATC 58.717 50.000 5.28 0.00 0.00 2.17
168 169 2.919602 AGGGCCTAAGGAAGACAAATCA 59.080 45.455 2.82 0.00 0.00 2.57
169 170 3.529319 AGGGCCTAAGGAAGACAAATCAT 59.471 43.478 2.82 0.00 0.00 2.45
170 171 3.633986 GGGCCTAAGGAAGACAAATCATG 59.366 47.826 0.84 0.00 0.00 3.07
172 173 4.706962 GGCCTAAGGAAGACAAATCATGTT 59.293 41.667 0.00 0.00 44.12 2.71
173 174 5.163612 GGCCTAAGGAAGACAAATCATGTTC 60.164 44.000 0.00 0.00 44.12 3.18
174 175 5.163612 GCCTAAGGAAGACAAATCATGTTCC 60.164 44.000 1.68 1.68 44.12 3.62
175 176 6.183347 CCTAAGGAAGACAAATCATGTTCCT 58.817 40.000 5.85 5.85 46.66 3.36
178 179 5.316327 GGAAGACAAATCATGTTCCTTCC 57.684 43.478 11.14 11.14 46.91 3.46
179 180 5.964958 GAAGACAAATCATGTTCCTTCCA 57.035 39.130 0.00 0.00 44.12 3.53
180 181 6.521151 GAAGACAAATCATGTTCCTTCCAT 57.479 37.500 0.00 0.00 44.12 3.41
181 182 6.923199 AAGACAAATCATGTTCCTTCCATT 57.077 33.333 0.00 0.00 44.12 3.16
182 183 6.923199 AGACAAATCATGTTCCTTCCATTT 57.077 33.333 0.00 0.00 44.12 2.32
183 184 7.307131 AGACAAATCATGTTCCTTCCATTTT 57.693 32.000 0.00 0.00 44.12 1.82
184 185 8.421249 AGACAAATCATGTTCCTTCCATTTTA 57.579 30.769 0.00 0.00 44.12 1.52
185 186 9.039165 AGACAAATCATGTTCCTTCCATTTTAT 57.961 29.630 0.00 0.00 44.12 1.40
186 187 9.090692 GACAAATCATGTTCCTTCCATTTTATG 57.909 33.333 0.00 0.00 44.12 1.90
187 188 8.814931 ACAAATCATGTTCCTTCCATTTTATGA 58.185 29.630 0.00 0.00 40.06 2.15
188 189 9.656040 CAAATCATGTTCCTTCCATTTTATGAA 57.344 29.630 0.00 0.00 0.00 2.57
190 191 9.826574 AATCATGTTCCTTCCATTTTATGAATG 57.173 29.630 0.00 0.00 0.00 2.67
191 192 8.592529 TCATGTTCCTTCCATTTTATGAATGA 57.407 30.769 5.49 0.00 0.00 2.57
192 193 9.033711 TCATGTTCCTTCCATTTTATGAATGAA 57.966 29.630 5.49 0.00 0.00 2.57
193 194 9.826574 CATGTTCCTTCCATTTTATGAATGAAT 57.173 29.630 5.49 0.00 0.00 2.57
195 196 9.033711 TGTTCCTTCCATTTTATGAATGAATCA 57.966 29.630 5.49 0.00 43.67 2.57
196 197 9.525409 GTTCCTTCCATTTTATGAATGAATCAG 57.475 33.333 5.49 0.00 42.53 2.90
197 198 8.827832 TCCTTCCATTTTATGAATGAATCAGT 57.172 30.769 5.49 0.00 42.53 3.41
198 199 9.919416 TCCTTCCATTTTATGAATGAATCAGTA 57.081 29.630 5.49 0.00 42.53 2.74
369 372 8.182227 GCCATACTCAAATTAGTTTTGTACTCC 58.818 37.037 0.00 0.00 44.25 3.85
370 373 8.674607 CCATACTCAAATTAGTTTTGTACTCCC 58.325 37.037 0.00 0.00 44.25 4.30
371 374 9.449719 CATACTCAAATTAGTTTTGTACTCCCT 57.550 33.333 0.00 0.00 44.25 4.20
373 376 8.392372 ACTCAAATTAGTTTTGTACTCCCTTC 57.608 34.615 0.00 0.00 44.25 3.46
374 377 7.172703 ACTCAAATTAGTTTTGTACTCCCTTCG 59.827 37.037 0.00 0.00 44.25 3.79
375 378 6.993902 TCAAATTAGTTTTGTACTCCCTTCGT 59.006 34.615 0.00 0.00 44.25 3.85
376 379 8.149647 TCAAATTAGTTTTGTACTCCCTTCGTA 58.850 33.333 0.00 0.00 44.25 3.43
377 380 8.943002 CAAATTAGTTTTGTACTCCCTTCGTAT 58.057 33.333 0.00 0.00 39.93 3.06
378 381 8.713737 AATTAGTTTTGTACTCCCTTCGTATC 57.286 34.615 0.00 0.00 38.33 2.24
379 382 5.733620 AGTTTTGTACTCCCTTCGTATCA 57.266 39.130 0.00 0.00 28.23 2.15
380 383 6.105397 AGTTTTGTACTCCCTTCGTATCAA 57.895 37.500 0.00 0.00 28.23 2.57
381 384 6.527423 AGTTTTGTACTCCCTTCGTATCAAA 58.473 36.000 0.00 0.00 28.23 2.69
382 385 6.993902 AGTTTTGTACTCCCTTCGTATCAAAA 59.006 34.615 0.00 0.00 32.35 2.44
383 386 7.664318 AGTTTTGTACTCCCTTCGTATCAAAAT 59.336 33.333 0.00 0.00 34.48 1.82
384 387 8.938906 GTTTTGTACTCCCTTCGTATCAAAATA 58.061 33.333 0.00 0.00 34.48 1.40
385 388 9.675464 TTTTGTACTCCCTTCGTATCAAAATAT 57.325 29.630 0.00 0.00 31.28 1.28
388 391 9.976511 TGTACTCCCTTCGTATCAAAATATAAG 57.023 33.333 0.00 0.00 0.00 1.73
391 394 7.866393 ACTCCCTTCGTATCAAAATATAAGACG 59.134 37.037 0.00 0.00 0.00 4.18
392 395 7.719483 TCCCTTCGTATCAAAATATAAGACGT 58.281 34.615 0.00 0.00 0.00 4.34
393 396 8.199449 TCCCTTCGTATCAAAATATAAGACGTT 58.801 33.333 0.00 0.00 0.00 3.99
394 397 8.823818 CCCTTCGTATCAAAATATAAGACGTTT 58.176 33.333 0.00 0.00 0.00 3.60
413 416 3.540314 TTTTTGGCACTGCAGAAATGT 57.460 38.095 23.35 0.00 0.00 2.71
414 417 2.798976 TTTGGCACTGCAGAAATGTC 57.201 45.000 23.35 10.85 0.00 3.06
415 418 1.985473 TTGGCACTGCAGAAATGTCT 58.015 45.000 23.35 0.00 32.85 3.41
416 419 1.985473 TGGCACTGCAGAAATGTCTT 58.015 45.000 23.35 0.00 28.78 3.01
417 420 3.138884 TGGCACTGCAGAAATGTCTTA 57.861 42.857 23.35 0.00 28.78 2.10
418 421 3.689347 TGGCACTGCAGAAATGTCTTAT 58.311 40.909 23.35 0.00 28.78 1.73
419 422 4.842574 TGGCACTGCAGAAATGTCTTATA 58.157 39.130 23.35 0.00 28.78 0.98
420 423 5.439721 TGGCACTGCAGAAATGTCTTATAT 58.560 37.500 23.35 0.00 28.78 0.86
421 424 5.887598 TGGCACTGCAGAAATGTCTTATATT 59.112 36.000 23.35 0.00 28.78 1.28
422 425 6.377996 TGGCACTGCAGAAATGTCTTATATTT 59.622 34.615 23.35 0.00 28.78 1.40
423 426 7.093814 TGGCACTGCAGAAATGTCTTATATTTT 60.094 33.333 23.35 0.00 28.78 1.82
424 427 7.221452 GGCACTGCAGAAATGTCTTATATTTTG 59.779 37.037 23.35 2.49 28.78 2.44
425 428 7.970061 GCACTGCAGAAATGTCTTATATTTTGA 59.030 33.333 23.35 0.00 28.78 2.69
452 455 8.539770 ACAGAGATAGAATGTTATTATTGCGG 57.460 34.615 0.00 0.00 0.00 5.69
453 456 7.604164 ACAGAGATAGAATGTTATTATTGCGGG 59.396 37.037 0.00 0.00 0.00 6.13
454 457 6.595716 AGAGATAGAATGTTATTATTGCGGGC 59.404 38.462 0.00 0.00 0.00 6.13
455 458 6.237901 AGATAGAATGTTATTATTGCGGGCA 58.762 36.000 0.00 0.00 0.00 5.36
456 459 6.886459 AGATAGAATGTTATTATTGCGGGCAT 59.114 34.615 0.00 0.00 0.00 4.40
457 460 5.125100 AGAATGTTATTATTGCGGGCATG 57.875 39.130 0.00 0.00 0.00 4.06
458 461 3.940209 ATGTTATTATTGCGGGCATGG 57.060 42.857 0.00 0.00 0.00 3.66
459 462 1.959985 TGTTATTATTGCGGGCATGGG 59.040 47.619 0.00 0.00 0.00 4.00
460 463 0.965439 TTATTATTGCGGGCATGGGC 59.035 50.000 0.00 0.00 40.13 5.36
461 464 0.178978 TATTATTGCGGGCATGGGCA 60.179 50.000 0.00 0.00 43.71 5.36
464 467 3.001994 TTGCGGGCATGGGCAATT 61.002 55.556 0.00 0.00 43.63 2.32
465 468 3.016541 TTGCGGGCATGGGCAATTC 62.017 57.895 0.00 0.00 43.63 2.17
466 469 3.149648 GCGGGCATGGGCAATTCT 61.150 61.111 0.00 0.00 43.71 2.40
467 470 2.724273 GCGGGCATGGGCAATTCTT 61.724 57.895 0.00 0.00 43.71 2.52
468 471 1.899617 CGGGCATGGGCAATTCTTT 59.100 52.632 0.00 0.00 43.71 2.52
469 472 0.249955 CGGGCATGGGCAATTCTTTT 59.750 50.000 0.00 0.00 43.71 2.27
470 473 1.338960 CGGGCATGGGCAATTCTTTTT 60.339 47.619 0.00 0.00 43.71 1.94
471 474 2.086094 GGGCATGGGCAATTCTTTTTG 58.914 47.619 0.00 0.00 43.71 2.44
486 489 6.620253 TTCTTTTTGCAGTGTAAAAACGTC 57.380 33.333 22.89 0.00 34.41 4.34
611 715 1.353694 GCCCAGCCCATTATCAGAGAT 59.646 52.381 0.00 0.00 0.00 2.75
664 768 2.457366 GTCGAACAAGACCAGACCAT 57.543 50.000 0.00 0.00 35.22 3.55
684 803 2.409870 CCACGCAAATCCTCTGGCC 61.410 63.158 0.00 0.00 0.00 5.36
738 870 4.935495 CGCTGGCACCACCACAGT 62.935 66.667 0.00 0.00 46.36 3.55
739 871 2.429930 GCTGGCACCACCACAGTA 59.570 61.111 0.00 0.00 46.36 2.74
740 872 1.002134 GCTGGCACCACCACAGTAT 60.002 57.895 0.00 0.00 46.36 2.12
868 1030 0.395724 ATTTCCCCAAGCACCGGATC 60.396 55.000 9.46 0.00 0.00 3.36
977 1146 4.517815 GCCAATCCCGACGCCGTA 62.518 66.667 0.00 0.00 0.00 4.02
990 1159 2.416432 GCCGTACTCGCCTTCCTCT 61.416 63.158 0.00 0.00 35.54 3.69
1341 1533 2.413142 GCTGTGCATCTCAAGGCCC 61.413 63.158 0.00 0.00 0.00 5.80
1705 1897 4.035843 GGATCAGACCCCGACACT 57.964 61.111 0.00 0.00 0.00 3.55
1706 1898 3.202548 GGATCAGACCCCGACACTA 57.797 57.895 0.00 0.00 0.00 2.74
2010 2210 8.912988 TGTTATGAAACTGATAATTTGATCCCC 58.087 33.333 0.00 0.00 36.51 4.81
2122 2334 3.194968 ACGTATTGGGACTAAGTGTGAGG 59.805 47.826 0.00 0.00 0.00 3.86
2197 2409 6.072452 GGTGTATTGAGATAATTAGCCAAGGC 60.072 42.308 2.02 2.02 42.33 4.35
2309 2536 6.325286 TGCCCATCCCAAATTTAGGTAAATAC 59.675 38.462 2.44 0.00 35.00 1.89
2313 2540 7.232737 CCATCCCAAATTTAGGTAAATACTCCC 59.767 40.741 2.44 0.00 35.00 4.30
2314 2541 7.533923 TCCCAAATTTAGGTAAATACTCCCT 57.466 36.000 2.44 0.00 35.00 4.20
2315 2542 7.580007 TCCCAAATTTAGGTAAATACTCCCTC 58.420 38.462 2.44 0.00 35.00 4.30
2316 2543 6.776116 CCCAAATTTAGGTAAATACTCCCTCC 59.224 42.308 0.00 0.00 35.00 4.30
2317 2544 6.485648 CCAAATTTAGGTAAATACTCCCTCCG 59.514 42.308 0.00 0.00 35.00 4.63
2318 2545 6.819947 AATTTAGGTAAATACTCCCTCCGT 57.180 37.500 0.00 0.00 35.00 4.69
2319 2546 5.859205 TTTAGGTAAATACTCCCTCCGTC 57.141 43.478 0.00 0.00 0.00 4.79
2320 2547 2.675583 AGGTAAATACTCCCTCCGTCC 58.324 52.381 0.00 0.00 0.00 4.79
2321 2548 1.339291 GGTAAATACTCCCTCCGTCCG 59.661 57.143 0.00 0.00 0.00 4.79
2322 2549 2.301346 GTAAATACTCCCTCCGTCCGA 58.699 52.381 0.00 0.00 0.00 4.55
2323 2550 1.856629 AAATACTCCCTCCGTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
2324 2551 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2325 2552 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2326 2553 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2327 2554 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2328 2555 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2329 2556 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2330 2557 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2331 2558 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2332 2559 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2333 2560 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2334 2561 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2343 2570 5.022021 CGAAAATACTTGTCGGAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
2344 2571 5.390461 CGAAAATACTTGTCGGAGAAATGCA 60.390 40.000 0.00 0.00 39.69 3.96
2345 2572 6.515272 AAAATACTTGTCGGAGAAATGCAT 57.485 33.333 0.00 0.00 39.69 3.96
2346 2573 7.465379 CGAAAATACTTGTCGGAGAAATGCATA 60.465 37.037 0.00 0.00 39.69 3.14
2347 2574 7.624360 AAATACTTGTCGGAGAAATGCATAA 57.376 32.000 0.00 0.00 39.69 1.90
2348 2575 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
2349 2576 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
2350 2577 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
2351 2578 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
2352 2579 6.808212 ACTTGTCGGAGAAATGCATAAAAATG 59.192 34.615 0.00 0.00 39.69 2.32
2353 2580 6.507958 TGTCGGAGAAATGCATAAAAATGA 57.492 33.333 0.00 0.00 39.69 2.57
2354 2581 6.918626 TGTCGGAGAAATGCATAAAAATGAA 58.081 32.000 0.00 0.00 39.69 2.57
2355 2582 7.546358 TGTCGGAGAAATGCATAAAAATGAAT 58.454 30.769 0.00 0.00 39.69 2.57
2356 2583 7.488792 TGTCGGAGAAATGCATAAAAATGAATG 59.511 33.333 0.00 0.00 39.69 2.67
2357 2584 7.489113 GTCGGAGAAATGCATAAAAATGAATGT 59.511 33.333 0.00 0.00 39.69 2.71
2358 2585 8.681806 TCGGAGAAATGCATAAAAATGAATGTA 58.318 29.630 0.00 0.00 0.00 2.29
2359 2586 9.467258 CGGAGAAATGCATAAAAATGAATGTAT 57.533 29.630 0.00 0.00 30.86 2.29
2389 2616 9.967346 GAACTAAAGTACATCTAGATACATGCA 57.033 33.333 4.54 0.00 0.00 3.96
2393 2620 8.839310 AAAGTACATCTAGATACATGCATTCC 57.161 34.615 4.54 0.00 0.00 3.01
2394 2621 7.789202 AGTACATCTAGATACATGCATTCCT 57.211 36.000 4.54 0.00 0.00 3.36
2395 2622 7.835822 AGTACATCTAGATACATGCATTCCTC 58.164 38.462 4.54 0.00 0.00 3.71
2396 2623 6.047511 ACATCTAGATACATGCATTCCTCC 57.952 41.667 4.54 0.00 0.00 4.30
2397 2624 4.790765 TCTAGATACATGCATTCCTCCG 57.209 45.455 0.00 0.00 0.00 4.63
2398 2625 4.407365 TCTAGATACATGCATTCCTCCGA 58.593 43.478 0.00 0.00 0.00 4.55
2399 2626 3.393089 AGATACATGCATTCCTCCGAC 57.607 47.619 0.00 0.00 0.00 4.79
2400 2627 2.061773 GATACATGCATTCCTCCGACG 58.938 52.381 0.00 0.00 0.00 5.12
2401 2628 1.107945 TACATGCATTCCTCCGACGA 58.892 50.000 0.00 0.00 0.00 4.20
2402 2629 0.179100 ACATGCATTCCTCCGACGAG 60.179 55.000 0.00 0.00 35.72 4.18
2403 2630 0.179100 CATGCATTCCTCCGACGAGT 60.179 55.000 0.00 0.00 33.93 4.18
2404 2631 1.067060 CATGCATTCCTCCGACGAGTA 59.933 52.381 0.00 0.00 33.93 2.59
2405 2632 1.399714 TGCATTCCTCCGACGAGTAT 58.600 50.000 0.00 0.00 33.93 2.12
2406 2633 1.754803 TGCATTCCTCCGACGAGTATT 59.245 47.619 0.00 0.00 33.93 1.89
2407 2634 2.167693 TGCATTCCTCCGACGAGTATTT 59.832 45.455 0.00 0.00 33.93 1.40
2408 2635 2.795470 GCATTCCTCCGACGAGTATTTC 59.205 50.000 0.00 0.00 33.93 2.17
2409 2636 3.381949 CATTCCTCCGACGAGTATTTCC 58.618 50.000 0.00 0.00 33.93 3.13
2410 2637 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
2411 2638 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
2412 2639 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
2413 2640 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
2414 2641 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
2415 2642 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
2416 2643 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
2417 2644 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
2418 2645 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
2419 2646 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
2420 2647 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2421 2648 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2422 2649 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2423 2650 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2424 2651 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
2425 2652 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
2426 2653 1.823041 CCGGACGGAGGGAGTAGTC 60.823 68.421 4.40 0.00 37.50 2.59
2427 2654 1.224039 CGGACGGAGGGAGTAGTCT 59.776 63.158 0.00 0.00 34.34 3.24
2432 2659 3.586892 GACGGAGGGAGTAGTCTTTTTG 58.413 50.000 0.00 0.00 0.00 2.44
2550 2885 5.127491 TCATTCAACCGTGGAAACTTTAGT 58.873 37.500 0.00 0.00 0.00 2.24
2710 3045 5.602145 AGGTTATCTGCTAAAGAGAGATGCT 59.398 40.000 0.00 0.00 38.67 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.927142 CGGTGCTTAAGAAGAACTCGATT 59.073 43.478 6.67 0.00 37.22 3.34
5 6 2.352421 CCGGTGCTTAAGAAGAACTCGA 60.352 50.000 6.67 0.00 37.22 4.04
7 8 2.737252 CACCGGTGCTTAAGAAGAACTC 59.263 50.000 24.02 0.00 37.22 3.01
21 22 4.989168 GTCCTATAGAAATAAGCACCGGTG 59.011 45.833 30.66 30.66 0.00 4.94
22 23 4.652421 TGTCCTATAGAAATAAGCACCGGT 59.348 41.667 0.00 0.00 0.00 5.28
23 24 5.010719 TCTGTCCTATAGAAATAAGCACCGG 59.989 44.000 0.00 0.00 0.00 5.28
24 25 5.921408 GTCTGTCCTATAGAAATAAGCACCG 59.079 44.000 0.00 0.00 0.00 4.94
25 26 5.921408 CGTCTGTCCTATAGAAATAAGCACC 59.079 44.000 0.00 0.00 0.00 5.01
26 27 5.402867 GCGTCTGTCCTATAGAAATAAGCAC 59.597 44.000 0.00 0.00 0.00 4.40
27 28 5.302059 AGCGTCTGTCCTATAGAAATAAGCA 59.698 40.000 0.00 0.00 0.00 3.91
28 29 5.774630 AGCGTCTGTCCTATAGAAATAAGC 58.225 41.667 0.00 0.00 0.00 3.09
29 30 9.915629 ATTAAGCGTCTGTCCTATAGAAATAAG 57.084 33.333 0.00 0.00 0.00 1.73
33 34 9.745880 CTTAATTAAGCGTCTGTCCTATAGAAA 57.254 33.333 12.15 0.00 0.00 2.52
50 51 5.048507 GTGGAGGGTAGACGCTTAATTAAG 58.951 45.833 19.08 19.08 39.39 1.85
51 52 4.467082 TGTGGAGGGTAGACGCTTAATTAA 59.533 41.667 0.33 0.00 39.39 1.40
52 53 4.025360 TGTGGAGGGTAGACGCTTAATTA 58.975 43.478 0.33 0.00 39.39 1.40
53 54 2.835764 TGTGGAGGGTAGACGCTTAATT 59.164 45.455 0.33 0.00 39.39 1.40
54 55 2.463752 TGTGGAGGGTAGACGCTTAAT 58.536 47.619 0.33 0.00 39.39 1.40
55 56 1.927487 TGTGGAGGGTAGACGCTTAA 58.073 50.000 0.33 0.00 39.39 1.85
56 57 1.927487 TTGTGGAGGGTAGACGCTTA 58.073 50.000 0.33 0.00 39.39 3.09
57 58 1.053424 TTTGTGGAGGGTAGACGCTT 58.947 50.000 0.33 0.00 39.39 4.68
58 59 1.276622 ATTTGTGGAGGGTAGACGCT 58.723 50.000 0.00 0.00 42.17 5.07
59 60 2.973694 TATTTGTGGAGGGTAGACGC 57.026 50.000 0.00 0.00 0.00 5.19
60 61 3.195661 GCTTATTTGTGGAGGGTAGACG 58.804 50.000 0.00 0.00 0.00 4.18
61 62 3.939592 GTGCTTATTTGTGGAGGGTAGAC 59.060 47.826 0.00 0.00 0.00 2.59
62 63 3.054655 GGTGCTTATTTGTGGAGGGTAGA 60.055 47.826 0.00 0.00 0.00 2.59
63 64 3.279434 GGTGCTTATTTGTGGAGGGTAG 58.721 50.000 0.00 0.00 0.00 3.18
64 65 2.355310 CGGTGCTTATTTGTGGAGGGTA 60.355 50.000 0.00 0.00 0.00 3.69
65 66 1.613255 CGGTGCTTATTTGTGGAGGGT 60.613 52.381 0.00 0.00 0.00 4.34
66 67 1.094785 CGGTGCTTATTTGTGGAGGG 58.905 55.000 0.00 0.00 0.00 4.30
67 68 1.094785 CCGGTGCTTATTTGTGGAGG 58.905 55.000 0.00 0.00 0.00 4.30
68 69 1.468520 CACCGGTGCTTATTTGTGGAG 59.531 52.381 24.02 0.00 0.00 3.86
69 70 1.529226 CACCGGTGCTTATTTGTGGA 58.471 50.000 24.02 0.00 0.00 4.02
96 97 8.141909 GGTGCTTAGAGAAATAAACCAGTTTTT 58.858 33.333 0.37 0.00 34.23 1.94
97 98 7.505923 AGGTGCTTAGAGAAATAAACCAGTTTT 59.494 33.333 0.37 0.00 34.23 2.43
98 99 7.004691 AGGTGCTTAGAGAAATAAACCAGTTT 58.995 34.615 0.86 0.86 36.63 2.66
99 100 6.543735 AGGTGCTTAGAGAAATAAACCAGTT 58.456 36.000 0.00 0.00 0.00 3.16
100 101 6.128138 AGGTGCTTAGAGAAATAAACCAGT 57.872 37.500 0.00 0.00 0.00 4.00
101 102 7.442666 GGATAGGTGCTTAGAGAAATAAACCAG 59.557 40.741 0.00 0.00 0.00 4.00
102 103 7.280356 GGATAGGTGCTTAGAGAAATAAACCA 58.720 38.462 0.00 0.00 0.00 3.67
103 104 6.711194 GGGATAGGTGCTTAGAGAAATAAACC 59.289 42.308 0.00 0.00 0.00 3.27
104 105 7.280356 TGGGATAGGTGCTTAGAGAAATAAAC 58.720 38.462 0.00 0.00 0.00 2.01
105 106 7.446106 TGGGATAGGTGCTTAGAGAAATAAA 57.554 36.000 0.00 0.00 0.00 1.40
106 107 7.446106 TTGGGATAGGTGCTTAGAGAAATAA 57.554 36.000 0.00 0.00 0.00 1.40
107 108 6.464465 GCTTGGGATAGGTGCTTAGAGAAATA 60.464 42.308 0.00 0.00 0.00 1.40
108 109 5.688766 GCTTGGGATAGGTGCTTAGAGAAAT 60.689 44.000 0.00 0.00 0.00 2.17
109 110 4.384208 GCTTGGGATAGGTGCTTAGAGAAA 60.384 45.833 0.00 0.00 0.00 2.52
110 111 3.134804 GCTTGGGATAGGTGCTTAGAGAA 59.865 47.826 0.00 0.00 0.00 2.87
111 112 2.700897 GCTTGGGATAGGTGCTTAGAGA 59.299 50.000 0.00 0.00 0.00 3.10
112 113 2.435805 TGCTTGGGATAGGTGCTTAGAG 59.564 50.000 0.00 0.00 0.00 2.43
113 114 2.170607 GTGCTTGGGATAGGTGCTTAGA 59.829 50.000 0.00 0.00 0.00 2.10
114 115 2.565841 GTGCTTGGGATAGGTGCTTAG 58.434 52.381 0.00 0.00 0.00 2.18
115 116 1.211949 GGTGCTTGGGATAGGTGCTTA 59.788 52.381 0.00 0.00 0.00 3.09
116 117 0.034089 GGTGCTTGGGATAGGTGCTT 60.034 55.000 0.00 0.00 0.00 3.91
117 118 0.916358 AGGTGCTTGGGATAGGTGCT 60.916 55.000 0.00 0.00 0.00 4.40
118 119 0.034089 AAGGTGCTTGGGATAGGTGC 60.034 55.000 0.00 0.00 0.00 5.01
119 120 1.755179 CAAGGTGCTTGGGATAGGTG 58.245 55.000 0.00 0.00 37.77 4.00
120 121 0.034089 GCAAGGTGCTTGGGATAGGT 60.034 55.000 0.00 0.00 41.31 3.08
121 122 0.034186 TGCAAGGTGCTTGGGATAGG 60.034 55.000 1.43 0.00 45.31 2.57
122 123 2.062971 ATGCAAGGTGCTTGGGATAG 57.937 50.000 0.00 0.00 45.31 2.08
123 124 2.101783 CAATGCAAGGTGCTTGGGATA 58.898 47.619 0.00 0.00 45.31 2.59
124 125 0.899720 CAATGCAAGGTGCTTGGGAT 59.100 50.000 0.00 0.00 45.31 3.85
125 126 0.469705 ACAATGCAAGGTGCTTGGGA 60.470 50.000 0.00 0.00 45.31 4.37
126 127 1.067635 GTACAATGCAAGGTGCTTGGG 60.068 52.381 0.00 3.39 45.31 4.12
127 128 1.612950 TGTACAATGCAAGGTGCTTGG 59.387 47.619 9.81 4.00 45.31 3.61
128 129 2.352030 CCTGTACAATGCAAGGTGCTTG 60.352 50.000 0.00 6.38 45.31 4.01
129 130 1.888512 CCTGTACAATGCAAGGTGCTT 59.111 47.619 0.00 0.00 45.31 3.91
130 131 1.538047 CCTGTACAATGCAAGGTGCT 58.462 50.000 0.00 0.00 45.31 4.40
131 132 0.527565 CCCTGTACAATGCAAGGTGC 59.472 55.000 0.00 0.00 45.29 5.01
132 133 0.527565 GCCCTGTACAATGCAAGGTG 59.472 55.000 10.53 0.00 0.00 4.00
133 134 0.611896 GGCCCTGTACAATGCAAGGT 60.612 55.000 15.74 0.00 0.00 3.50
134 135 0.323725 AGGCCCTGTACAATGCAAGG 60.324 55.000 15.74 4.43 0.00 3.61
135 136 2.418368 TAGGCCCTGTACAATGCAAG 57.582 50.000 15.74 0.00 0.00 4.01
136 137 2.620367 CCTTAGGCCCTGTACAATGCAA 60.620 50.000 15.74 4.46 0.00 4.08
137 138 1.064758 CCTTAGGCCCTGTACAATGCA 60.065 52.381 15.74 0.00 0.00 3.96
138 139 1.211949 TCCTTAGGCCCTGTACAATGC 59.788 52.381 0.00 7.56 0.00 3.56
139 140 3.199946 TCTTCCTTAGGCCCTGTACAATG 59.800 47.826 0.00 0.00 0.00 2.82
140 141 3.200165 GTCTTCCTTAGGCCCTGTACAAT 59.800 47.826 0.00 0.00 0.00 2.71
141 142 2.570302 GTCTTCCTTAGGCCCTGTACAA 59.430 50.000 0.00 0.00 0.00 2.41
142 143 2.185387 GTCTTCCTTAGGCCCTGTACA 58.815 52.381 0.00 0.00 0.00 2.90
143 144 2.185387 TGTCTTCCTTAGGCCCTGTAC 58.815 52.381 0.00 0.00 0.00 2.90
144 145 2.634639 TGTCTTCCTTAGGCCCTGTA 57.365 50.000 0.00 0.00 0.00 2.74
145 146 1.742308 TTGTCTTCCTTAGGCCCTGT 58.258 50.000 0.00 0.00 0.00 4.00
146 147 2.879103 TTTGTCTTCCTTAGGCCCTG 57.121 50.000 0.00 0.00 0.00 4.45
147 148 2.919602 TGATTTGTCTTCCTTAGGCCCT 59.080 45.455 0.00 0.00 0.00 5.19
148 149 3.366052 TGATTTGTCTTCCTTAGGCCC 57.634 47.619 0.00 0.00 0.00 5.80
149 150 4.273318 ACATGATTTGTCTTCCTTAGGCC 58.727 43.478 0.00 0.00 30.89 5.19
150 151 5.163612 GGAACATGATTTGTCTTCCTTAGGC 60.164 44.000 0.00 0.00 37.68 3.93
151 152 6.183347 AGGAACATGATTTGTCTTCCTTAGG 58.817 40.000 0.00 0.00 41.02 2.69
152 153 7.693969 AAGGAACATGATTTGTCTTCCTTAG 57.306 36.000 17.94 0.00 46.65 2.18
155 156 5.012893 GGAAGGAACATGATTTGTCTTCCT 58.987 41.667 18.20 13.30 46.33 3.36
156 157 5.316327 GGAAGGAACATGATTTGTCTTCC 57.684 43.478 0.00 9.07 45.06 3.46
157 158 5.964958 TGGAAGGAACATGATTTGTCTTC 57.035 39.130 0.00 3.93 37.68 2.87
158 159 6.923199 AATGGAAGGAACATGATTTGTCTT 57.077 33.333 0.00 0.00 37.68 3.01
159 160 6.923199 AAATGGAAGGAACATGATTTGTCT 57.077 33.333 0.00 0.00 37.68 3.41
160 161 9.090692 CATAAAATGGAAGGAACATGATTTGTC 57.909 33.333 0.00 0.00 37.68 3.18
161 162 8.814931 TCATAAAATGGAAGGAACATGATTTGT 58.185 29.630 0.00 0.00 41.53 2.83
162 163 9.656040 TTCATAAAATGGAAGGAACATGATTTG 57.344 29.630 0.00 0.00 0.00 2.32
164 165 9.826574 CATTCATAAAATGGAAGGAACATGATT 57.173 29.630 0.00 0.00 0.00 2.57
165 166 9.204337 TCATTCATAAAATGGAAGGAACATGAT 57.796 29.630 0.00 0.00 31.69 2.45
166 167 8.592529 TCATTCATAAAATGGAAGGAACATGA 57.407 30.769 0.00 0.00 31.69 3.07
167 168 9.826574 ATTCATTCATAAAATGGAAGGAACATG 57.173 29.630 3.97 0.00 43.70 3.21
169 170 9.033711 TGATTCATTCATAAAATGGAAGGAACA 57.966 29.630 3.97 3.08 43.70 3.18
170 171 9.525409 CTGATTCATTCATAAAATGGAAGGAAC 57.475 33.333 3.97 1.01 43.70 3.62
171 172 9.258629 ACTGATTCATTCATAAAATGGAAGGAA 57.741 29.630 4.31 4.31 44.59 3.36
172 173 8.827832 ACTGATTCATTCATAAAATGGAAGGA 57.172 30.769 0.00 0.00 32.64 3.36
255 256 4.202080 CCACATGCATGCTATGTTAAAGCT 60.202 41.667 26.53 0.00 40.73 3.74
256 257 4.046462 CCACATGCATGCTATGTTAAAGC 58.954 43.478 26.53 0.00 36.67 3.51
393 396 3.132646 AGACATTTCTGCAGTGCCAAAAA 59.867 39.130 14.67 10.56 0.00 1.94
394 397 2.694628 AGACATTTCTGCAGTGCCAAAA 59.305 40.909 14.67 13.09 0.00 2.44
395 398 2.309613 AGACATTTCTGCAGTGCCAAA 58.690 42.857 14.67 11.97 0.00 3.28
396 399 1.985473 AGACATTTCTGCAGTGCCAA 58.015 45.000 14.67 2.22 0.00 4.52
397 400 1.985473 AAGACATTTCTGCAGTGCCA 58.015 45.000 14.67 0.00 29.98 4.92
398 401 6.382869 AATATAAGACATTTCTGCAGTGCC 57.617 37.500 14.67 0.00 29.98 5.01
399 402 7.970061 TCAAAATATAAGACATTTCTGCAGTGC 59.030 33.333 14.67 8.58 29.98 4.40
426 429 9.639601 CCGCAATAATAACATTCTATCTCTGTA 57.360 33.333 0.00 0.00 0.00 2.74
427 430 7.604164 CCCGCAATAATAACATTCTATCTCTGT 59.396 37.037 0.00 0.00 0.00 3.41
428 431 7.413438 GCCCGCAATAATAACATTCTATCTCTG 60.413 40.741 0.00 0.00 0.00 3.35
429 432 6.595716 GCCCGCAATAATAACATTCTATCTCT 59.404 38.462 0.00 0.00 0.00 3.10
430 433 6.371548 TGCCCGCAATAATAACATTCTATCTC 59.628 38.462 0.00 0.00 0.00 2.75
431 434 6.237901 TGCCCGCAATAATAACATTCTATCT 58.762 36.000 0.00 0.00 0.00 1.98
432 435 6.494893 TGCCCGCAATAATAACATTCTATC 57.505 37.500 0.00 0.00 0.00 2.08
433 436 6.127647 CCATGCCCGCAATAATAACATTCTAT 60.128 38.462 0.00 0.00 0.00 1.98
434 437 5.182950 CCATGCCCGCAATAATAACATTCTA 59.817 40.000 0.00 0.00 0.00 2.10
435 438 4.022068 CCATGCCCGCAATAATAACATTCT 60.022 41.667 0.00 0.00 0.00 2.40
436 439 4.236935 CCATGCCCGCAATAATAACATTC 58.763 43.478 0.00 0.00 0.00 2.67
437 440 3.006752 CCCATGCCCGCAATAATAACATT 59.993 43.478 0.00 0.00 0.00 2.71
438 441 2.562298 CCCATGCCCGCAATAATAACAT 59.438 45.455 0.00 0.00 0.00 2.71
439 442 1.959985 CCCATGCCCGCAATAATAACA 59.040 47.619 0.00 0.00 0.00 2.41
440 443 1.336795 GCCCATGCCCGCAATAATAAC 60.337 52.381 0.00 0.00 0.00 1.89
441 444 0.965439 GCCCATGCCCGCAATAATAA 59.035 50.000 0.00 0.00 0.00 1.40
442 445 0.178978 TGCCCATGCCCGCAATAATA 60.179 50.000 0.00 0.00 36.33 0.98
443 446 1.047596 TTGCCCATGCCCGCAATAAT 61.048 50.000 8.49 0.00 39.96 1.28
444 447 1.683707 TTGCCCATGCCCGCAATAA 60.684 52.632 8.49 0.00 39.96 1.40
445 448 2.043551 TTGCCCATGCCCGCAATA 60.044 55.556 8.49 0.00 39.96 1.90
448 451 3.459965 GAATTGCCCATGCCCGCA 61.460 61.111 0.00 0.00 36.33 5.69
449 452 2.242797 AAAGAATTGCCCATGCCCGC 62.243 55.000 0.00 0.00 36.33 6.13
450 453 0.249955 AAAAGAATTGCCCATGCCCG 59.750 50.000 0.00 0.00 36.33 6.13
451 454 2.086094 CAAAAAGAATTGCCCATGCCC 58.914 47.619 0.00 0.00 36.33 5.36
460 463 7.452231 ACGTTTTTACACTGCAAAAAGAATTG 58.548 30.769 0.84 0.00 35.98 2.32
461 464 7.462200 CGACGTTTTTACACTGCAAAAAGAATT 60.462 33.333 0.84 0.00 35.98 2.17
462 465 6.020995 CGACGTTTTTACACTGCAAAAAGAAT 60.021 34.615 0.84 0.00 35.98 2.40
463 466 5.284188 CGACGTTTTTACACTGCAAAAAGAA 59.716 36.000 0.84 0.00 35.98 2.52
464 467 4.789119 CGACGTTTTTACACTGCAAAAAGA 59.211 37.500 0.84 0.00 35.98 2.52
465 468 4.555747 ACGACGTTTTTACACTGCAAAAAG 59.444 37.500 0.00 0.91 35.98 2.27
466 469 4.474113 ACGACGTTTTTACACTGCAAAAA 58.526 34.783 0.00 0.00 33.61 1.94
467 470 4.080969 ACGACGTTTTTACACTGCAAAA 57.919 36.364 0.00 0.00 0.00 2.44
468 471 3.743567 ACGACGTTTTTACACTGCAAA 57.256 38.095 0.00 0.00 0.00 3.68
469 472 6.709145 ATATACGACGTTTTTACACTGCAA 57.291 33.333 5.50 0.00 0.00 4.08
470 473 6.709145 AATATACGACGTTTTTACACTGCA 57.291 33.333 5.50 0.00 0.00 4.41
471 474 7.006742 CCAAAATATACGACGTTTTTACACTGC 59.993 37.037 5.50 0.00 0.00 4.40
472 475 8.011106 ACCAAAATATACGACGTTTTTACACTG 58.989 33.333 5.50 0.00 0.00 3.66
473 476 8.086851 ACCAAAATATACGACGTTTTTACACT 57.913 30.769 5.50 0.00 0.00 3.55
474 477 9.249844 GTACCAAAATATACGACGTTTTTACAC 57.750 33.333 5.50 2.84 0.00 2.90
475 478 8.982685 TGTACCAAAATATACGACGTTTTTACA 58.017 29.630 5.50 6.15 0.00 2.41
561 659 4.863491 GACTGACACAGTGCAATGATTTT 58.137 39.130 22.73 1.01 45.44 1.82
562 660 4.494350 GACTGACACAGTGCAATGATTT 57.506 40.909 22.73 3.76 45.44 2.17
611 715 1.252904 GGTGACCCTACACGCCAGTA 61.253 60.000 0.00 0.00 41.12 2.74
635 739 2.413453 GTCTTGTTCGACCTTGATGCTC 59.587 50.000 0.00 0.00 0.00 4.26
664 768 0.392461 GCCAGAGGATTTGCGTGGTA 60.392 55.000 0.00 0.00 0.00 3.25
724 843 1.295101 CGATACTGTGGTGGTGCCA 59.705 57.895 0.00 0.00 46.95 4.92
868 1030 0.173708 GAGGTAGTTCTCCACAGCGG 59.826 60.000 0.00 0.00 0.00 5.52
977 1146 2.756283 CCGGAGAGGAAGGCGAGT 60.756 66.667 0.00 0.00 45.00 4.18
1341 1533 1.683011 GGGTTGGTGGTGATCATCCTG 60.683 57.143 2.86 0.00 0.00 3.86
1702 1894 7.433131 TGAGAAACTTTACAACGTAGTGTAGTG 59.567 37.037 0.75 1.67 45.00 2.74
1703 1895 7.483307 TGAGAAACTTTACAACGTAGTGTAGT 58.517 34.615 0.75 0.00 45.00 2.73
1704 1896 7.919313 TGAGAAACTTTACAACGTAGTGTAG 57.081 36.000 0.75 0.00 45.00 2.74
1705 1897 7.436080 CCTTGAGAAACTTTACAACGTAGTGTA 59.564 37.037 0.00 0.00 45.00 2.90
1706 1898 6.257193 CCTTGAGAAACTTTACAACGTAGTGT 59.743 38.462 0.00 0.00 45.00 3.55
2010 2210 9.631452 AGTGATGACATTACATATCAGTATTCG 57.369 33.333 12.40 0.00 32.90 3.34
2197 2409 3.692257 ACTGACATGAAGGAGACCTTG 57.308 47.619 7.81 0.00 44.82 3.61
2309 2536 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2313 2540 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2314 2541 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2320 2547 5.022021 GCATTTCTCCGACAAGTATTTTCG 58.978 41.667 0.00 0.00 0.00 3.46
2321 2548 5.938322 TGCATTTCTCCGACAAGTATTTTC 58.062 37.500 0.00 0.00 0.00 2.29
2322 2549 5.957842 TGCATTTCTCCGACAAGTATTTT 57.042 34.783 0.00 0.00 0.00 1.82
2323 2550 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
2324 2551 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
2325 2552 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
2326 2553 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
2327 2554 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
2328 2555 7.028962 TCATTTTTATGCATTTCTCCGACAAG 58.971 34.615 3.54 0.00 0.00 3.16
2329 2556 6.918626 TCATTTTTATGCATTTCTCCGACAA 58.081 32.000 3.54 0.00 0.00 3.18
2330 2557 6.507958 TCATTTTTATGCATTTCTCCGACA 57.492 33.333 3.54 0.00 0.00 4.35
2331 2558 7.489113 ACATTCATTTTTATGCATTTCTCCGAC 59.511 33.333 3.54 0.00 0.00 4.79
2332 2559 7.546358 ACATTCATTTTTATGCATTTCTCCGA 58.454 30.769 3.54 0.00 0.00 4.55
2333 2560 7.760131 ACATTCATTTTTATGCATTTCTCCG 57.240 32.000 3.54 0.00 0.00 4.63
2363 2590 9.967346 TGCATGTATCTAGATGTACTTTAGTTC 57.033 33.333 15.79 0.00 30.38 3.01
2367 2594 9.929180 GGAATGCATGTATCTAGATGTACTTTA 57.071 33.333 15.79 0.00 30.38 1.85
2368 2595 8.654997 AGGAATGCATGTATCTAGATGTACTTT 58.345 33.333 15.79 5.06 30.38 2.66
2369 2596 8.200024 AGGAATGCATGTATCTAGATGTACTT 57.800 34.615 15.79 2.14 30.38 2.24
2370 2597 7.093552 GGAGGAATGCATGTATCTAGATGTACT 60.094 40.741 15.79 0.00 30.38 2.73
2371 2598 7.038659 GGAGGAATGCATGTATCTAGATGTAC 58.961 42.308 15.79 7.08 30.38 2.90
2372 2599 6.127619 CGGAGGAATGCATGTATCTAGATGTA 60.128 42.308 15.79 4.44 30.38 2.29
2373 2600 5.337089 CGGAGGAATGCATGTATCTAGATGT 60.337 44.000 15.79 0.00 30.38 3.06
2374 2601 5.105595 TCGGAGGAATGCATGTATCTAGATG 60.106 44.000 15.79 0.83 0.00 2.90
2375 2602 5.019470 TCGGAGGAATGCATGTATCTAGAT 58.981 41.667 10.73 10.73 0.00 1.98
2376 2603 4.218635 GTCGGAGGAATGCATGTATCTAGA 59.781 45.833 0.00 0.00 0.00 2.43
2377 2604 4.489810 GTCGGAGGAATGCATGTATCTAG 58.510 47.826 0.00 0.00 0.00 2.43
2378 2605 3.057526 CGTCGGAGGAATGCATGTATCTA 60.058 47.826 0.00 0.00 0.00 1.98
2379 2606 2.288457 CGTCGGAGGAATGCATGTATCT 60.288 50.000 0.00 0.00 0.00 1.98
2380 2607 2.061773 CGTCGGAGGAATGCATGTATC 58.938 52.381 0.00 0.00 0.00 2.24
2381 2608 1.686587 TCGTCGGAGGAATGCATGTAT 59.313 47.619 0.00 0.00 0.00 2.29
2382 2609 1.067060 CTCGTCGGAGGAATGCATGTA 59.933 52.381 0.00 0.00 36.61 2.29
2383 2610 0.179100 CTCGTCGGAGGAATGCATGT 60.179 55.000 0.00 0.00 36.61 3.21
2384 2611 0.179100 ACTCGTCGGAGGAATGCATG 60.179 55.000 0.00 0.00 44.93 4.06
2385 2612 1.399714 TACTCGTCGGAGGAATGCAT 58.600 50.000 0.00 0.00 44.93 3.96
2386 2613 1.399714 ATACTCGTCGGAGGAATGCA 58.600 50.000 1.73 0.00 44.93 3.96
2387 2614 2.510768 AATACTCGTCGGAGGAATGC 57.489 50.000 1.73 0.00 44.93 3.56
2388 2615 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
2389 2616 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
2390 2617 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
2391 2618 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
2392 2619 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
2393 2620 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
2394 2621 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
2395 2622 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
2396 2623 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
2397 2624 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
2398 2625 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
2399 2626 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
2400 2627 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
2401 2628 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2402 2629 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2403 2630 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2404 2631 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2405 2632 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2406 2633 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2407 2634 2.262774 GACTACTCCCTCCGTCCGGA 62.263 65.000 0.00 0.00 42.90 5.14
2408 2635 1.823041 GACTACTCCCTCCGTCCGG 60.823 68.421 0.00 0.00 0.00 5.14
2409 2636 0.394080 AAGACTACTCCCTCCGTCCG 60.394 60.000 0.00 0.00 0.00 4.79
2410 2637 1.849977 AAAGACTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
2411 2638 3.586892 CAAAAAGACTACTCCCTCCGTC 58.413 50.000 0.00 0.00 0.00 4.79
2412 2639 2.302157 CCAAAAAGACTACTCCCTCCGT 59.698 50.000 0.00 0.00 0.00 4.69
2413 2640 2.565834 TCCAAAAAGACTACTCCCTCCG 59.434 50.000 0.00 0.00 0.00 4.63
2414 2641 4.580868 CTTCCAAAAAGACTACTCCCTCC 58.419 47.826 0.00 0.00 0.00 4.30
2415 2642 4.004314 GCTTCCAAAAAGACTACTCCCTC 58.996 47.826 0.00 0.00 0.00 4.30
2416 2643 3.394606 TGCTTCCAAAAAGACTACTCCCT 59.605 43.478 0.00 0.00 0.00 4.20
2417 2644 3.751518 TGCTTCCAAAAAGACTACTCCC 58.248 45.455 0.00 0.00 0.00 4.30
2418 2645 3.189495 GCTGCTTCCAAAAAGACTACTCC 59.811 47.826 0.00 0.00 0.00 3.85
2419 2646 4.068599 AGCTGCTTCCAAAAAGACTACTC 58.931 43.478 0.00 0.00 0.00 2.59
2420 2647 3.817647 CAGCTGCTTCCAAAAAGACTACT 59.182 43.478 0.00 0.00 0.00 2.57
2421 2648 3.057946 CCAGCTGCTTCCAAAAAGACTAC 60.058 47.826 8.66 0.00 0.00 2.73
2422 2649 3.149196 CCAGCTGCTTCCAAAAAGACTA 58.851 45.455 8.66 0.00 0.00 2.59
2423 2650 1.959282 CCAGCTGCTTCCAAAAAGACT 59.041 47.619 8.66 0.00 0.00 3.24
2424 2651 1.956477 TCCAGCTGCTTCCAAAAAGAC 59.044 47.619 8.66 0.00 0.00 3.01
2425 2652 2.158623 TCTCCAGCTGCTTCCAAAAAGA 60.159 45.455 8.66 0.00 0.00 2.52
2426 2653 2.228343 CTCTCCAGCTGCTTCCAAAAAG 59.772 50.000 8.66 0.00 0.00 2.27
2427 2654 2.233271 CTCTCCAGCTGCTTCCAAAAA 58.767 47.619 8.66 0.00 0.00 1.94
2569 2904 5.047660 AGGAGAACTCATCTGTGTACACTTC 60.048 44.000 25.60 17.94 38.96 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.