Multiple sequence alignment - TraesCS5D01G451600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G451600 chr5D 100.000 3702 0 0 1 3702 499855569 499859270 0.000000e+00 6837.0
1 TraesCS5D01G451600 chr5D 84.971 173 17 3 2880 3043 403969962 403969790 2.290000e-37 167.0
2 TraesCS5D01G451600 chr5D 93.478 46 3 0 801 846 350331951 350331906 6.630000e-08 69.4
3 TraesCS5D01G451600 chr5A 93.657 1608 72 12 903 2502 624197113 624198698 0.000000e+00 2377.0
4 TraesCS5D01G451600 chr5A 94.649 542 21 5 2572 3106 624198823 624199363 0.000000e+00 833.0
5 TraesCS5D01G451600 chr5A 95.455 506 16 4 3198 3702 624199387 624199886 0.000000e+00 800.0
6 TraesCS5D01G451600 chr5A 86.706 504 38 14 314 806 624195133 624195618 1.960000e-147 532.0
7 TraesCS5D01G451600 chr5A 90.000 60 6 0 2807 2866 41527420 41527361 1.100000e-10 78.7
8 TraesCS5D01G451600 chr5B 94.405 1537 64 9 867 2396 621230420 621231941 0.000000e+00 2342.0
9 TraesCS5D01G451600 chr5B 84.894 662 75 13 98 749 621229591 621230237 0.000000e+00 645.0
10 TraesCS5D01G451600 chr5B 83.658 257 20 13 2523 2764 621232215 621232464 4.810000e-54 222.0
11 TraesCS5D01G451600 chr5B 86.585 164 19 3 2882 3043 621232657 621232819 1.060000e-40 178.0
12 TraesCS5D01G451600 chr5B 89.583 96 10 0 2771 2866 621232505 621232600 5.020000e-24 122.0
13 TraesCS5D01G451600 chr5B 95.455 44 2 0 800 843 531189215 531189258 1.840000e-08 71.3
14 TraesCS5D01G451600 chr4B 79.219 948 165 26 1312 2249 517008510 517007585 6.750000e-177 630.0
15 TraesCS5D01G451600 chr4B 78.151 952 165 33 1312 2249 517171613 517172535 1.930000e-157 566.0
16 TraesCS5D01G451600 chr4B 77.182 951 151 37 1312 2249 517081634 517080737 9.240000e-136 494.0
17 TraesCS5D01G451600 chr4D 78.233 951 166 33 1312 2249 419232645 419231723 4.150000e-159 571.0
18 TraesCS5D01G451600 chr4D 84.971 173 17 6 2880 3043 275235194 275235022 2.290000e-37 167.0
19 TraesCS5D01G451600 chr4D 90.909 55 5 0 2807 2861 275235303 275235249 1.430000e-09 75.0
20 TraesCS5D01G451600 chr4D 93.617 47 3 0 800 846 497465924 497465970 1.840000e-08 71.3
21 TraesCS5D01G451600 chr4A 77.986 586 97 22 1671 2249 45366265 45365705 4.580000e-89 339.0
22 TraesCS5D01G451600 chr3A 72.025 958 205 45 1316 2249 110000569 110001487 3.720000e-55 226.0
23 TraesCS5D01G451600 chr3D 71.903 783 172 38 1464 2234 114182387 114183133 2.270000e-42 183.0
24 TraesCS5D01G451600 chr3D 95.455 44 2 0 800 843 400683940 400683983 1.840000e-08 71.3
25 TraesCS5D01G451600 chr1B 85.549 173 16 3 2880 3043 159087316 159087488 4.920000e-39 172.0
26 TraesCS5D01G451600 chr1B 90.909 55 5 0 2807 2861 107876812 107876758 1.430000e-09 75.0
27 TraesCS5D01G451600 chr1B 90.566 53 4 1 802 853 12365075 12365023 6.630000e-08 69.4
28 TraesCS5D01G451600 chr2B 85.057 174 15 8 2880 3043 691134511 691134339 2.290000e-37 167.0
29 TraesCS5D01G451600 chr2B 90.000 60 6 0 2807 2866 691134621 691134562 1.100000e-10 78.7
30 TraesCS5D01G451600 chr1D 84.971 173 17 3 2880 3043 463401418 463401246 2.290000e-37 167.0
31 TraesCS5D01G451600 chr1D 83.815 173 19 3 2880 3043 26248777 26248949 4.950000e-34 156.0
32 TraesCS5D01G451600 chr7B 83.929 168 18 6 2880 3038 707972973 707972806 6.400000e-33 152.0
33 TraesCS5D01G451600 chr7B 90.909 55 5 0 2807 2861 27765576 27765630 1.430000e-09 75.0
34 TraesCS5D01G451600 chr7B 90.909 55 5 0 2807 2861 707973083 707973029 1.430000e-09 75.0
35 TraesCS5D01G451600 chr7B 93.478 46 3 0 801 846 141852298 141852253 6.630000e-08 69.4
36 TraesCS5D01G451600 chr1A 90.000 60 6 0 2807 2866 30576425 30576366 1.100000e-10 78.7
37 TraesCS5D01G451600 chr7A 88.060 67 3 4 803 868 697006931 697006869 1.430000e-09 75.0
38 TraesCS5D01G451600 chr2D 88.710 62 4 3 788 846 300888168 300888229 5.130000e-09 73.1
39 TraesCS5D01G451600 chr6D 95.455 44 2 0 800 843 110157074 110157031 1.840000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G451600 chr5D 499855569 499859270 3701 False 6837.0 6837 100.00000 1 3702 1 chr5D.!!$F1 3701
1 TraesCS5D01G451600 chr5A 624195133 624199886 4753 False 1135.5 2377 92.61675 314 3702 4 chr5A.!!$F1 3388
2 TraesCS5D01G451600 chr5B 621229591 621232819 3228 False 701.8 2342 87.82500 98 3043 5 chr5B.!!$F2 2945
3 TraesCS5D01G451600 chr4B 517007585 517008510 925 True 630.0 630 79.21900 1312 2249 1 chr4B.!!$R1 937
4 TraesCS5D01G451600 chr4B 517171613 517172535 922 False 566.0 566 78.15100 1312 2249 1 chr4B.!!$F1 937
5 TraesCS5D01G451600 chr4B 517080737 517081634 897 True 494.0 494 77.18200 1312 2249 1 chr4B.!!$R2 937
6 TraesCS5D01G451600 chr4D 419231723 419232645 922 True 571.0 571 78.23300 1312 2249 1 chr4D.!!$R1 937
7 TraesCS5D01G451600 chr4A 45365705 45366265 560 True 339.0 339 77.98600 1671 2249 1 chr4A.!!$R1 578
8 TraesCS5D01G451600 chr3A 110000569 110001487 918 False 226.0 226 72.02500 1316 2249 1 chr3A.!!$F1 933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 684 0.034059 AGGCTCTTCAACGTGACCTG 59.966 55.0 0.0 0.0 0.0 4.00 F
1246 2851 0.178992 AAAAGCACCAGTAGCAGCCA 60.179 50.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2562 4391 0.111639 TAGTGGGTTGGGCTTGAACC 59.888 55.0 0.0 0.0 42.0 3.62 R
3146 5066 0.036294 GCCGAGCCCTTTGTAGAAGT 60.036 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.162716 GCGATGCGTCTCCAAAAGT 58.837 52.632 4.05 0.00 0.00 2.66
23 24 0.095417 GCGATGCGTCTCCAAAAGTC 59.905 55.000 4.05 0.00 0.00 3.01
24 25 1.428448 CGATGCGTCTCCAAAAGTCA 58.572 50.000 4.05 0.00 0.00 3.41
25 26 2.002586 CGATGCGTCTCCAAAAGTCAT 58.997 47.619 4.05 0.00 0.00 3.06
26 27 2.416547 CGATGCGTCTCCAAAAGTCATT 59.583 45.455 4.05 0.00 0.00 2.57
27 28 3.616821 CGATGCGTCTCCAAAAGTCATTA 59.383 43.478 4.05 0.00 0.00 1.90
28 29 4.271049 CGATGCGTCTCCAAAAGTCATTAT 59.729 41.667 4.05 0.00 0.00 1.28
29 30 4.944962 TGCGTCTCCAAAAGTCATTATG 57.055 40.909 0.00 0.00 0.00 1.90
30 31 4.323417 TGCGTCTCCAAAAGTCATTATGT 58.677 39.130 0.00 0.00 0.00 2.29
31 32 4.391830 TGCGTCTCCAAAAGTCATTATGTC 59.608 41.667 0.00 0.00 0.00 3.06
32 33 4.201822 GCGTCTCCAAAAGTCATTATGTCC 60.202 45.833 0.00 0.00 0.00 4.02
33 34 4.032900 CGTCTCCAAAAGTCATTATGTCCG 59.967 45.833 0.00 0.00 0.00 4.79
34 35 4.332819 GTCTCCAAAAGTCATTATGTCCGG 59.667 45.833 0.00 0.00 0.00 5.14
35 36 4.019681 TCTCCAAAAGTCATTATGTCCGGT 60.020 41.667 0.00 0.00 0.00 5.28
36 37 4.258543 TCCAAAAGTCATTATGTCCGGTC 58.741 43.478 0.00 0.00 0.00 4.79
37 38 4.006989 CCAAAAGTCATTATGTCCGGTCA 58.993 43.478 3.25 3.25 0.00 4.02
38 39 4.640201 CCAAAAGTCATTATGTCCGGTCAT 59.360 41.667 18.20 18.20 0.00 3.06
39 40 5.449041 CCAAAAGTCATTATGTCCGGTCATG 60.449 44.000 22.31 9.17 0.00 3.07
40 41 4.487714 AAGTCATTATGTCCGGTCATGT 57.512 40.909 22.31 9.52 0.00 3.21
41 42 4.487714 AGTCATTATGTCCGGTCATGTT 57.512 40.909 22.31 8.16 0.00 2.71
42 43 5.607939 AGTCATTATGTCCGGTCATGTTA 57.392 39.130 22.31 9.36 0.00 2.41
43 44 5.601662 AGTCATTATGTCCGGTCATGTTAG 58.398 41.667 22.31 10.60 0.00 2.34
44 45 5.362717 AGTCATTATGTCCGGTCATGTTAGA 59.637 40.000 22.31 12.44 0.00 2.10
45 46 5.462398 GTCATTATGTCCGGTCATGTTAGAC 59.538 44.000 22.31 18.54 37.80 2.59
53 54 1.076332 GTCATGTTAGACCACACCGC 58.924 55.000 0.00 0.00 32.36 5.68
54 55 0.973632 TCATGTTAGACCACACCGCT 59.026 50.000 0.00 0.00 0.00 5.52
55 56 1.067142 TCATGTTAGACCACACCGCTC 60.067 52.381 0.00 0.00 0.00 5.03
56 57 1.066858 CATGTTAGACCACACCGCTCT 60.067 52.381 0.00 0.00 0.00 4.09
57 58 1.045407 TGTTAGACCACACCGCTCTT 58.955 50.000 0.00 0.00 0.00 2.85
58 59 2.241160 TGTTAGACCACACCGCTCTTA 58.759 47.619 0.00 0.00 0.00 2.10
59 60 2.829720 TGTTAGACCACACCGCTCTTAT 59.170 45.455 0.00 0.00 0.00 1.73
60 61 3.119245 TGTTAGACCACACCGCTCTTATC 60.119 47.826 0.00 0.00 0.00 1.75
61 62 0.824759 AGACCACACCGCTCTTATCC 59.175 55.000 0.00 0.00 0.00 2.59
62 63 0.535335 GACCACACCGCTCTTATCCA 59.465 55.000 0.00 0.00 0.00 3.41
63 64 0.537188 ACCACACCGCTCTTATCCAG 59.463 55.000 0.00 0.00 0.00 3.86
64 65 0.537188 CCACACCGCTCTTATCCAGT 59.463 55.000 0.00 0.00 0.00 4.00
65 66 1.754803 CCACACCGCTCTTATCCAGTA 59.245 52.381 0.00 0.00 0.00 2.74
66 67 2.223829 CCACACCGCTCTTATCCAGTAG 60.224 54.545 0.00 0.00 0.00 2.57
67 68 1.409427 ACACCGCTCTTATCCAGTAGC 59.591 52.381 0.00 0.00 0.00 3.58
72 73 2.953020 GCTCTTATCCAGTAGCGATGG 58.047 52.381 0.00 0.00 39.33 3.51
73 74 2.353208 GCTCTTATCCAGTAGCGATGGG 60.353 54.545 5.25 0.00 38.44 4.00
74 75 3.157881 CTCTTATCCAGTAGCGATGGGA 58.842 50.000 5.25 0.00 38.44 4.37
75 76 2.891580 TCTTATCCAGTAGCGATGGGAC 59.108 50.000 5.25 0.00 38.44 4.46
91 92 3.831323 TGGGACATGTCAACATTGAAGT 58.169 40.909 26.47 0.00 39.21 3.01
92 93 3.569277 TGGGACATGTCAACATTGAAGTG 59.431 43.478 26.47 1.52 39.21 3.16
93 94 3.820467 GGGACATGTCAACATTGAAGTGA 59.180 43.478 26.47 0.00 39.21 3.41
94 95 4.320494 GGGACATGTCAACATTGAAGTGAC 60.320 45.833 26.47 4.48 39.21 3.67
95 96 4.275689 GGACATGTCAACATTGAAGTGACA 59.724 41.667 26.47 18.07 42.57 3.58
96 97 5.221028 GGACATGTCAACATTGAAGTGACAA 60.221 40.000 26.47 0.00 41.85 3.18
102 103 5.687285 GTCAACATTGAAGTGACAATCAACC 59.313 40.000 6.07 0.00 38.29 3.77
105 106 5.132502 ACATTGAAGTGACAATCAACCTGA 58.867 37.500 6.07 0.00 38.29 3.86
107 108 4.149511 TGAAGTGACAATCAACCTGACA 57.850 40.909 0.00 0.00 0.00 3.58
172 173 3.134127 GGTGTGCGCCTTGATCCC 61.134 66.667 4.18 0.00 0.00 3.85
174 175 4.776322 TGTGCGCCTTGATCCCCG 62.776 66.667 4.18 0.00 0.00 5.73
216 217 3.263489 TGATCCCCACGCGTAATTTAA 57.737 42.857 13.44 0.00 0.00 1.52
219 220 1.077915 CCCCACGCGTAATTTAACGT 58.922 50.000 13.44 0.00 44.64 3.99
221 222 1.060986 CCCACGCGTAATTTAACGTCC 59.939 52.381 13.44 0.00 44.64 4.79
226 227 3.859386 ACGCGTAATTTAACGTCCTAAGG 59.141 43.478 11.67 0.00 44.64 2.69
235 236 2.544844 ACGTCCTAAGGAGGGATTCA 57.455 50.000 0.00 0.00 43.94 2.57
246 247 2.670939 GAGGGATTCAAGGGGATTTGG 58.329 52.381 0.00 0.00 0.00 3.28
266 267 3.883462 CCACGCGGCAGAATTACA 58.117 55.556 12.47 0.00 0.00 2.41
267 268 1.423845 CCACGCGGCAGAATTACAC 59.576 57.895 12.47 0.00 0.00 2.90
281 282 3.855689 ATTACACTGCCAGCATTTCAC 57.144 42.857 0.00 0.00 0.00 3.18
286 287 3.181463 ACACTGCCAGCATTTCACATTTT 60.181 39.130 0.00 0.00 0.00 1.82
290 291 2.936553 GCCAGCATTTCACATTTTCCCC 60.937 50.000 0.00 0.00 0.00 4.81
309 310 1.186267 CCCTATGTACGGGAGGAGGC 61.186 65.000 8.67 0.00 44.90 4.70
310 311 0.469331 CCTATGTACGGGAGGAGGCA 60.469 60.000 2.11 0.00 31.45 4.75
350 351 4.995487 ACACTCATTTTCGTCTTACCCTTC 59.005 41.667 0.00 0.00 0.00 3.46
400 401 2.697425 CGCTCCATCGTTGCTTCG 59.303 61.111 0.00 0.00 0.00 3.79
413 414 2.259818 CTTCGCTGCTCTCCACGT 59.740 61.111 0.00 0.00 0.00 4.49
420 421 2.046892 GCTCTCCACGTGTGCCAT 60.047 61.111 15.65 0.00 0.00 4.40
440 441 1.349688 TCATAACCAAGCTCCACCGTT 59.650 47.619 0.00 0.00 0.00 4.44
448 449 2.358737 CTCCACCGTTGTGCCTCC 60.359 66.667 0.00 0.00 41.35 4.30
472 476 2.435938 TCATGGAAAGACGCCGCC 60.436 61.111 0.00 0.00 0.00 6.13
473 477 3.864686 CATGGAAAGACGCCGCCG 61.865 66.667 0.00 0.00 41.14 6.46
577 589 1.677637 GGATGTCCTCCACGACCTCC 61.678 65.000 0.00 0.00 44.26 4.30
579 591 2.283676 GTCCTCCACGACCTCCCA 60.284 66.667 0.00 0.00 0.00 4.37
589 601 3.711059 GACCTCCCATGGCCTGCTG 62.711 68.421 6.09 0.00 0.00 4.41
663 675 4.324563 CCCCTTGATAGAAAGGCTCTTCAA 60.325 45.833 10.57 5.31 44.69 2.69
672 684 0.034059 AGGCTCTTCAACGTGACCTG 59.966 55.000 0.00 0.00 0.00 4.00
686 698 3.638484 GTGACCTGCACAAAAATACACC 58.362 45.455 0.00 0.00 46.91 4.16
744 756 4.898829 TTGTTCAATGACACACTCTTGG 57.101 40.909 0.00 0.00 0.00 3.61
754 895 6.353404 TGACACACTCTTGGTATATCAACA 57.647 37.500 0.00 0.00 0.00 3.33
792 934 9.743057 TGCGCTAATATATTTTTGCAAGTAAAT 57.257 25.926 9.73 12.46 0.00 1.40
802 944 8.891671 ATTTTTGCAAGTAAATCATGTGAAGT 57.108 26.923 0.00 0.00 0.00 3.01
803 945 9.979578 ATTTTTGCAAGTAAATCATGTGAAGTA 57.020 25.926 0.00 0.00 0.00 2.24
804 946 8.795786 TTTTGCAAGTAAATCATGTGAAGTAC 57.204 30.769 0.00 0.00 0.00 2.73
805 947 7.744087 TTGCAAGTAAATCATGTGAAGTACT 57.256 32.000 0.00 0.00 32.45 2.73
806 948 7.744087 TGCAAGTAAATCATGTGAAGTACTT 57.256 32.000 8.13 8.13 37.78 2.24
807 949 7.806690 TGCAAGTAAATCATGTGAAGTACTTC 58.193 34.615 25.73 25.73 36.44 3.01
808 950 7.443879 TGCAAGTAAATCATGTGAAGTACTTCA 59.556 33.333 30.07 30.07 46.27 3.02
860 1002 9.570468 AGATCACTACTTATATTCTGTTACGGA 57.430 33.333 0.00 0.00 0.00 4.69
863 1005 8.573885 TCACTACTTATATTCTGTTACGGATGG 58.426 37.037 0.00 0.00 0.00 3.51
883 1026 7.762615 CGGATGGAGTACTAATTTACAGAAACA 59.237 37.037 0.00 0.00 0.00 2.83
897 1040 9.912634 ATTTACAGAAACATGTACTTCATTTGG 57.087 29.630 11.80 0.82 35.44 3.28
914 2518 5.819901 TCATTTGGCCGAAATTTTTGAAAGT 59.180 32.000 10.16 0.00 31.41 2.66
916 2520 6.502136 TTTGGCCGAAATTTTTGAAAGTTT 57.498 29.167 1.75 0.00 31.64 2.66
954 2558 4.031652 CCAATTCCACGAAATTTGCGATTC 59.968 41.667 3.21 0.00 0.00 2.52
1061 2666 4.331717 CGAAACCGATAGCATTACAAACCT 59.668 41.667 0.00 0.00 0.00 3.50
1074 2679 1.110442 CAAACCTGGTGAGGCAAACA 58.890 50.000 0.00 0.00 44.33 2.83
1113 2718 3.826754 CCTAGCCGTGCTCTCGCA 61.827 66.667 1.46 0.00 45.60 5.10
1133 2738 2.093941 CACTCGGCGTCGATATACCTAG 59.906 54.545 14.65 0.00 45.04 3.02
1234 2839 2.029518 GCAGCCCACCAAAAGCAC 59.970 61.111 0.00 0.00 0.00 4.40
1238 2843 2.133641 GCCCACCAAAAGCACCAGT 61.134 57.895 0.00 0.00 0.00 4.00
1244 2849 0.242017 CCAAAAGCACCAGTAGCAGC 59.758 55.000 0.00 0.00 0.00 5.25
1245 2850 0.242017 CAAAAGCACCAGTAGCAGCC 59.758 55.000 0.00 0.00 0.00 4.85
1246 2851 0.178992 AAAAGCACCAGTAGCAGCCA 60.179 50.000 0.00 0.00 0.00 4.75
1795 3437 2.099141 TCCTCAAGATTTGCGACCTG 57.901 50.000 0.00 0.00 0.00 4.00
1798 3440 0.690192 TCAAGATTTGCGACCTGGGA 59.310 50.000 0.00 0.00 0.00 4.37
1945 3587 1.067416 GTGCGTCATGGCCGAGATA 59.933 57.895 9.44 0.00 0.00 1.98
1981 3623 1.006571 GTTCAAGGGCGACGTGAGA 60.007 57.895 0.00 0.00 38.78 3.27
2053 3695 3.986006 GACGACAGGACGTGGCCA 61.986 66.667 0.00 0.00 46.52 5.36
2096 3738 3.406361 GCGCGGTGCATAGATCGG 61.406 66.667 8.83 0.00 45.45 4.18
2179 3830 2.424733 GGACGGCTACCAGGTCCTC 61.425 68.421 0.00 0.00 45.34 3.71
2278 3929 3.698463 GACGTCGGCACCAACACG 61.698 66.667 0.00 2.24 38.24 4.49
2364 4015 2.202479 GAAGAATGCGCAACGGCC 60.202 61.111 17.11 0.00 36.38 6.13
2401 4145 2.812591 CAATGGAGCCATGTAGATGCTC 59.187 50.000 11.24 11.24 36.68 4.26
2412 4160 3.629058 TGTAGATGCTCGAAGAATACGC 58.371 45.455 0.00 0.00 34.09 4.42
2419 4167 2.412089 GCTCGAAGAATACGCACTTGTT 59.588 45.455 0.00 0.00 34.09 2.83
2420 4168 3.120649 GCTCGAAGAATACGCACTTGTTT 60.121 43.478 0.00 0.00 34.09 2.83
2421 4169 4.610680 GCTCGAAGAATACGCACTTGTTTT 60.611 41.667 0.00 0.00 34.09 2.43
2422 4170 5.412526 TCGAAGAATACGCACTTGTTTTT 57.587 34.783 0.00 0.00 0.00 1.94
2423 4171 5.201910 TCGAAGAATACGCACTTGTTTTTG 58.798 37.500 0.00 0.00 0.00 2.44
2424 4172 4.967575 CGAAGAATACGCACTTGTTTTTGT 59.032 37.500 0.00 0.00 0.00 2.83
2425 4173 6.018913 TCGAAGAATACGCACTTGTTTTTGTA 60.019 34.615 0.00 0.00 0.00 2.41
2426 4174 6.629649 CGAAGAATACGCACTTGTTTTTGTAA 59.370 34.615 0.00 0.00 0.00 2.41
2427 4175 7.356154 CGAAGAATACGCACTTGTTTTTGTAAC 60.356 37.037 0.00 0.00 0.00 2.50
2428 4176 7.023197 AGAATACGCACTTGTTTTTGTAACT 57.977 32.000 0.00 0.00 0.00 2.24
2429 4177 7.477494 AGAATACGCACTTGTTTTTGTAACTT 58.523 30.769 0.00 0.00 0.00 2.66
2430 4178 7.642586 AGAATACGCACTTGTTTTTGTAACTTC 59.357 33.333 0.00 0.00 0.00 3.01
2431 4179 4.092816 ACGCACTTGTTTTTGTAACTTCG 58.907 39.130 0.00 0.00 0.00 3.79
2432 4180 4.142859 ACGCACTTGTTTTTGTAACTTCGA 60.143 37.500 0.00 0.00 0.00 3.71
2433 4181 4.967575 CGCACTTGTTTTTGTAACTTCGAT 59.032 37.500 0.00 0.00 0.00 3.59
2434 4182 5.113529 CGCACTTGTTTTTGTAACTTCGATC 59.886 40.000 0.00 0.00 0.00 3.69
2437 4185 7.339207 CACTTGTTTTTGTAACTTCGATCGTA 58.661 34.615 15.94 4.34 0.00 3.43
2494 4246 7.961351 AGAAGTTGTATCTCTATCTCCCAATG 58.039 38.462 0.00 0.00 0.00 2.82
2502 4254 9.213799 GTATCTCTATCTCCCAATGAAACATTC 57.786 37.037 0.00 0.00 0.00 2.67
2503 4255 7.443302 TCTCTATCTCCCAATGAAACATTCT 57.557 36.000 0.00 0.00 0.00 2.40
2506 4258 7.278135 TCTATCTCCCAATGAAACATTCTCTG 58.722 38.462 0.00 0.00 0.00 3.35
2510 4262 6.069440 TCTCCCAATGAAACATTCTCTGGTAT 60.069 38.462 0.00 0.00 33.14 2.73
2513 4265 6.125029 CCAATGAAACATTCTCTGGTATCCT 58.875 40.000 0.00 0.00 31.51 3.24
2514 4266 6.261826 CCAATGAAACATTCTCTGGTATCCTC 59.738 42.308 0.00 0.00 31.51 3.71
2515 4267 6.821616 ATGAAACATTCTCTGGTATCCTCT 57.178 37.500 0.00 0.00 0.00 3.69
2518 4270 8.324191 TGAAACATTCTCTGGTATCCTCTATT 57.676 34.615 0.00 0.00 0.00 1.73
2519 4271 9.434275 TGAAACATTCTCTGGTATCCTCTATTA 57.566 33.333 0.00 0.00 0.00 0.98
2535 4364 7.683578 TCCTCTATTAGCATATGCACTCAAAT 58.316 34.615 28.62 19.33 45.16 2.32
2538 4367 8.327941 TCTATTAGCATATGCACTCAAATTCC 57.672 34.615 28.62 0.00 45.16 3.01
2551 4380 9.912634 TGCACTCAAATTCCTTTCTTAATTTAG 57.087 29.630 0.00 0.00 34.40 1.85
2587 4418 3.072476 TCAAGCCCAACCCACTATATAGC 59.928 47.826 9.78 0.00 0.00 2.97
2611 4442 5.065914 TGAGGATGAACTGAAGAAACCTTG 58.934 41.667 0.00 0.00 0.00 3.61
2619 4450 7.930217 TGAACTGAAGAAACCTTGTAGAATTG 58.070 34.615 0.00 0.00 0.00 2.32
2620 4451 7.556275 TGAACTGAAGAAACCTTGTAGAATTGT 59.444 33.333 0.00 0.00 0.00 2.71
2730 4568 5.045578 ACTTCCTTTAAAGAGCATAGCCTGA 60.046 40.000 16.98 0.00 0.00 3.86
2769 4635 6.723298 TGTTGCTCCAGGAATTTCTTAAAA 57.277 33.333 0.00 0.00 0.00 1.52
2838 4712 7.950684 AGTGAGGCATCCTTAGAATACTATGTA 59.049 37.037 0.00 0.00 31.76 2.29
2851 4725 7.197017 AGAATACTATGTAGTTCTGACGCTTG 58.803 38.462 0.00 0.00 37.73 4.01
2902 4818 3.676873 GCAGGGAAGTATGCACATTTTGG 60.677 47.826 0.00 0.00 42.11 3.28
2943 4859 7.062255 GCCAACTAAAATCTGTGAGCATTAAAC 59.938 37.037 0.00 0.00 0.00 2.01
2950 4866 5.227569 TCTGTGAGCATTAAACCTTCTGA 57.772 39.130 0.00 0.00 0.00 3.27
2957 4873 8.490355 GTGAGCATTAAACCTTCTGAAAAATTG 58.510 33.333 0.00 0.00 0.00 2.32
2966 4882 3.641437 TCTGAAAAATTGGGTCAAGCG 57.359 42.857 0.00 0.00 0.00 4.68
2993 4909 0.324552 AGGGCCTGCATGCACATTTA 60.325 50.000 18.46 0.00 37.02 1.40
3110 5030 9.567848 TGTCAGAAACTTGAATAAACTTTCAAC 57.432 29.630 0.00 0.00 39.91 3.18
3111 5031 9.788960 GTCAGAAACTTGAATAAACTTTCAACT 57.211 29.630 0.00 0.00 39.91 3.16
3112 5032 9.787532 TCAGAAACTTGAATAAACTTTCAACTG 57.212 29.630 8.06 8.06 39.91 3.16
3117 5037 9.450807 AACTTGAATAAACTTTCAACTGATTCG 57.549 29.630 0.00 0.00 39.91 3.34
3118 5038 8.621286 ACTTGAATAAACTTTCAACTGATTCGT 58.379 29.630 0.00 0.00 39.91 3.85
3119 5039 9.107367 CTTGAATAAACTTTCAACTGATTCGTC 57.893 33.333 0.00 0.00 39.91 4.20
3120 5040 8.148807 TGAATAAACTTTCAACTGATTCGTCA 57.851 30.769 0.00 0.00 32.82 4.35
3121 5041 8.282592 TGAATAAACTTTCAACTGATTCGTCAG 58.717 33.333 4.01 4.01 36.04 3.51
3132 5052 5.896922 CTGATTCGTCAGTATTGGCTAAG 57.103 43.478 0.00 0.00 33.32 2.18
3133 5053 4.693283 TGATTCGTCAGTATTGGCTAAGG 58.307 43.478 0.00 0.00 0.00 2.69
3134 5054 4.161565 TGATTCGTCAGTATTGGCTAAGGT 59.838 41.667 0.00 0.00 0.00 3.50
3135 5055 4.546829 TTCGTCAGTATTGGCTAAGGTT 57.453 40.909 0.00 0.00 0.00 3.50
3136 5056 4.119442 TCGTCAGTATTGGCTAAGGTTC 57.881 45.455 0.00 0.00 0.00 3.62
3137 5057 3.512329 TCGTCAGTATTGGCTAAGGTTCA 59.488 43.478 0.00 0.00 0.00 3.18
3138 5058 3.865745 CGTCAGTATTGGCTAAGGTTCAG 59.134 47.826 0.00 0.00 0.00 3.02
3139 5059 3.623510 GTCAGTATTGGCTAAGGTTCAGC 59.376 47.826 0.00 0.00 38.35 4.26
3140 5060 3.263170 TCAGTATTGGCTAAGGTTCAGCA 59.737 43.478 0.00 0.00 40.95 4.41
3141 5061 3.624861 CAGTATTGGCTAAGGTTCAGCAG 59.375 47.826 0.00 0.00 40.95 4.24
3142 5062 2.134789 ATTGGCTAAGGTTCAGCAGG 57.865 50.000 0.00 0.00 40.95 4.85
3143 5063 0.609131 TTGGCTAAGGTTCAGCAGGC 60.609 55.000 0.00 0.00 40.95 4.85
3144 5064 1.750780 GGCTAAGGTTCAGCAGGCC 60.751 63.158 0.00 0.00 40.95 5.19
3145 5065 1.750780 GCTAAGGTTCAGCAGGCCC 60.751 63.158 0.00 0.00 38.93 5.80
3146 5066 1.685224 CTAAGGTTCAGCAGGCCCA 59.315 57.895 0.00 0.00 0.00 5.36
3147 5067 0.678048 CTAAGGTTCAGCAGGCCCAC 60.678 60.000 0.00 0.00 0.00 4.61
3148 5068 1.133809 TAAGGTTCAGCAGGCCCACT 61.134 55.000 0.00 0.00 0.00 4.00
3149 5069 2.011617 AAGGTTCAGCAGGCCCACTT 62.012 55.000 0.00 0.00 0.00 3.16
3150 5070 1.973812 GGTTCAGCAGGCCCACTTC 60.974 63.158 0.00 0.00 0.00 3.01
3151 5071 1.073897 GTTCAGCAGGCCCACTTCT 59.926 57.895 0.00 0.00 0.00 2.85
3152 5072 0.324943 GTTCAGCAGGCCCACTTCTA 59.675 55.000 0.00 0.00 0.00 2.10
3153 5073 0.324943 TTCAGCAGGCCCACTTCTAC 59.675 55.000 0.00 0.00 0.00 2.59
3154 5074 0.835971 TCAGCAGGCCCACTTCTACA 60.836 55.000 0.00 0.00 0.00 2.74
3155 5075 0.036732 CAGCAGGCCCACTTCTACAA 59.963 55.000 0.00 0.00 0.00 2.41
3156 5076 0.771127 AGCAGGCCCACTTCTACAAA 59.229 50.000 0.00 0.00 0.00 2.83
3157 5077 1.168714 GCAGGCCCACTTCTACAAAG 58.831 55.000 0.00 0.00 0.00 2.77
3158 5078 1.826385 CAGGCCCACTTCTACAAAGG 58.174 55.000 0.00 0.00 0.00 3.11
3159 5079 0.698818 AGGCCCACTTCTACAAAGGG 59.301 55.000 0.00 0.00 42.55 3.95
3162 5082 2.115343 CCCACTTCTACAAAGGGCTC 57.885 55.000 0.00 0.00 31.81 4.70
3163 5083 1.676014 CCCACTTCTACAAAGGGCTCG 60.676 57.143 0.00 0.00 31.81 5.03
3164 5084 1.676014 CCACTTCTACAAAGGGCTCGG 60.676 57.143 0.00 0.00 0.00 4.63
3165 5085 0.036294 ACTTCTACAAAGGGCTCGGC 60.036 55.000 0.00 0.00 0.00 5.54
3166 5086 0.036388 CTTCTACAAAGGGCTCGGCA 60.036 55.000 0.00 0.00 0.00 5.69
3167 5087 0.398696 TTCTACAAAGGGCTCGGCAA 59.601 50.000 0.00 0.00 0.00 4.52
3168 5088 0.321298 TCTACAAAGGGCTCGGCAAC 60.321 55.000 0.00 0.00 0.00 4.17
3169 5089 1.302993 TACAAAGGGCTCGGCAACC 60.303 57.895 0.00 0.00 0.00 3.77
3170 5090 1.774894 TACAAAGGGCTCGGCAACCT 61.775 55.000 0.00 0.00 35.78 3.50
3171 5091 1.002624 CAAAGGGCTCGGCAACCTA 60.003 57.895 0.00 0.00 33.37 3.08
3172 5092 0.394352 CAAAGGGCTCGGCAACCTAT 60.394 55.000 0.00 0.00 33.37 2.57
3173 5093 0.107165 AAAGGGCTCGGCAACCTATC 60.107 55.000 0.00 0.00 33.37 2.08
3174 5094 1.984288 AAGGGCTCGGCAACCTATCC 61.984 60.000 0.00 0.00 33.37 2.59
3175 5095 2.444256 GGGCTCGGCAACCTATCCT 61.444 63.158 0.00 0.00 0.00 3.24
3176 5096 1.119574 GGGCTCGGCAACCTATCCTA 61.120 60.000 0.00 0.00 0.00 2.94
3177 5097 0.318762 GGCTCGGCAACCTATCCTAG 59.681 60.000 0.00 0.00 0.00 3.02
3178 5098 0.319986 GCTCGGCAACCTATCCTAGC 60.320 60.000 0.00 0.00 34.67 3.42
3179 5099 0.318762 CTCGGCAACCTATCCTAGCC 59.681 60.000 0.00 0.00 41.86 3.93
3180 5100 0.397957 TCGGCAACCTATCCTAGCCA 60.398 55.000 0.00 0.00 45.47 4.75
3181 5101 0.468226 CGGCAACCTATCCTAGCCAA 59.532 55.000 0.00 0.00 45.47 4.52
3182 5102 1.072331 CGGCAACCTATCCTAGCCAAT 59.928 52.381 0.00 0.00 45.47 3.16
3183 5103 2.301870 CGGCAACCTATCCTAGCCAATA 59.698 50.000 0.00 0.00 45.47 1.90
3184 5104 3.617531 CGGCAACCTATCCTAGCCAATAG 60.618 52.174 0.00 0.00 45.47 1.73
3185 5105 3.328050 GGCAACCTATCCTAGCCAATAGT 59.672 47.826 0.00 0.00 44.59 2.12
3186 5106 4.202472 GGCAACCTATCCTAGCCAATAGTT 60.202 45.833 0.00 0.00 44.59 2.24
3187 5107 4.998033 GCAACCTATCCTAGCCAATAGTTC 59.002 45.833 0.00 0.00 0.00 3.01
3188 5108 5.230942 CAACCTATCCTAGCCAATAGTTCG 58.769 45.833 0.00 0.00 0.00 3.95
3189 5109 3.833070 ACCTATCCTAGCCAATAGTTCGG 59.167 47.826 0.00 0.00 0.00 4.30
3190 5110 4.087182 CCTATCCTAGCCAATAGTTCGGA 58.913 47.826 0.00 0.00 0.00 4.55
3191 5111 4.527038 CCTATCCTAGCCAATAGTTCGGAA 59.473 45.833 0.00 0.00 0.00 4.30
3192 5112 5.011738 CCTATCCTAGCCAATAGTTCGGAAA 59.988 44.000 0.00 0.00 0.00 3.13
3193 5113 4.829872 TCCTAGCCAATAGTTCGGAAAA 57.170 40.909 0.00 0.00 0.00 2.29
3194 5114 5.168647 TCCTAGCCAATAGTTCGGAAAAA 57.831 39.130 0.00 0.00 0.00 1.94
3261 5181 4.261801 ACAGTATGCTAACATGGTGGTTC 58.738 43.478 0.00 0.00 42.53 3.62
3275 5195 3.293337 GGTGGTTCCAGGTGTAAACTTT 58.707 45.455 0.00 0.00 35.97 2.66
3299 5219 5.722263 TGAATGCATTTTGACAGGTAATGG 58.278 37.500 14.33 0.00 31.54 3.16
3306 5226 5.779241 TTTTGACAGGTAATGGGAGATCT 57.221 39.130 0.00 0.00 0.00 2.75
3307 5227 6.884472 TTTTGACAGGTAATGGGAGATCTA 57.116 37.500 0.00 0.00 0.00 1.98
3308 5228 6.884472 TTTGACAGGTAATGGGAGATCTAA 57.116 37.500 0.00 0.00 0.00 2.10
3309 5229 7.451731 TTTGACAGGTAATGGGAGATCTAAT 57.548 36.000 0.00 0.00 0.00 1.73
3310 5230 7.451731 TTGACAGGTAATGGGAGATCTAATT 57.548 36.000 0.00 0.00 0.00 1.40
3323 5243 4.950050 AGATCTAATTAACCTGGTGCGAG 58.050 43.478 0.00 0.00 0.00 5.03
3434 5354 1.452953 AATGCATGCATCCAGCCTCG 61.453 55.000 32.25 0.00 44.83 4.63
3449 5369 1.405526 GCCTCGGAGACAACATGCTTA 60.406 52.381 6.58 0.00 0.00 3.09
3454 5374 2.282555 CGGAGACAACATGCTTATGTCG 59.717 50.000 12.83 2.93 46.19 4.35
3521 5442 7.533426 AGAAAACATGCATAGCACTTTTAGAG 58.467 34.615 0.00 0.00 43.04 2.43
3535 5456 1.681229 TTAGAGGGCCCCATCTGTTT 58.319 50.000 21.43 0.00 0.00 2.83
3546 5467 5.067805 GGCCCCATCTGTTTTAGTGATTAAG 59.932 44.000 0.00 0.00 0.00 1.85
3554 5475 4.153475 TGTTTTAGTGATTAAGCCGCTGTC 59.847 41.667 0.00 0.00 0.00 3.51
3559 5480 4.770795 AGTGATTAAGCCGCTGTCTATTT 58.229 39.130 0.00 0.00 0.00 1.40
3566 5487 4.137116 AGCCGCTGTCTATTTACATCAA 57.863 40.909 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.095417 GACTTTTGGAGACGCATCGC 59.905 55.000 0.00 0.00 0.00 4.58
5 6 1.428448 TGACTTTTGGAGACGCATCG 58.572 50.000 0.00 0.00 0.00 3.84
6 7 5.065218 ACATAATGACTTTTGGAGACGCATC 59.935 40.000 0.00 0.00 0.00 3.91
7 8 4.943705 ACATAATGACTTTTGGAGACGCAT 59.056 37.500 0.00 0.00 0.00 4.73
8 9 4.323417 ACATAATGACTTTTGGAGACGCA 58.677 39.130 0.00 0.00 0.00 5.24
9 10 4.201822 GGACATAATGACTTTTGGAGACGC 60.202 45.833 0.00 0.00 0.00 5.19
10 11 4.032900 CGGACATAATGACTTTTGGAGACG 59.967 45.833 0.00 0.00 0.00 4.18
11 12 4.332819 CCGGACATAATGACTTTTGGAGAC 59.667 45.833 0.00 0.00 0.00 3.36
12 13 4.019681 ACCGGACATAATGACTTTTGGAGA 60.020 41.667 9.46 0.00 0.00 3.71
13 14 4.261801 ACCGGACATAATGACTTTTGGAG 58.738 43.478 9.46 0.00 0.00 3.86
14 15 4.258543 GACCGGACATAATGACTTTTGGA 58.741 43.478 9.46 0.00 0.00 3.53
15 16 4.006989 TGACCGGACATAATGACTTTTGG 58.993 43.478 9.46 0.00 0.00 3.28
16 17 5.123820 ACATGACCGGACATAATGACTTTTG 59.876 40.000 18.98 7.14 0.00 2.44
17 18 5.253330 ACATGACCGGACATAATGACTTTT 58.747 37.500 18.98 0.00 0.00 2.27
18 19 4.843728 ACATGACCGGACATAATGACTTT 58.156 39.130 18.98 0.00 0.00 2.66
19 20 4.487714 ACATGACCGGACATAATGACTT 57.512 40.909 18.98 0.00 0.00 3.01
20 21 4.487714 AACATGACCGGACATAATGACT 57.512 40.909 18.98 0.00 0.00 3.41
21 22 5.462398 GTCTAACATGACCGGACATAATGAC 59.538 44.000 18.98 18.11 0.00 3.06
22 23 5.452776 GGTCTAACATGACCGGACATAATGA 60.453 44.000 18.98 11.76 45.69 2.57
23 24 4.750098 GGTCTAACATGACCGGACATAATG 59.250 45.833 18.98 11.38 45.69 1.90
24 25 4.957296 GGTCTAACATGACCGGACATAAT 58.043 43.478 18.98 12.85 45.69 1.28
25 26 4.395959 GGTCTAACATGACCGGACATAA 57.604 45.455 18.98 7.25 45.69 1.90
27 28 2.981859 GGTCTAACATGACCGGACAT 57.018 50.000 13.89 13.89 45.69 3.06
34 35 1.076332 GCGGTGTGGTCTAACATGAC 58.924 55.000 0.00 0.00 36.31 3.06
35 36 0.973632 AGCGGTGTGGTCTAACATGA 59.026 50.000 0.00 0.00 31.49 3.07
36 37 1.359848 GAGCGGTGTGGTCTAACATG 58.640 55.000 0.00 0.00 41.93 3.21
37 38 3.834732 GAGCGGTGTGGTCTAACAT 57.165 52.632 0.00 0.00 41.93 2.71
43 44 0.535335 TGGATAAGAGCGGTGTGGTC 59.465 55.000 0.00 0.00 45.59 4.02
44 45 0.537188 CTGGATAAGAGCGGTGTGGT 59.463 55.000 0.00 0.00 0.00 4.16
45 46 0.537188 ACTGGATAAGAGCGGTGTGG 59.463 55.000 0.00 0.00 0.00 4.17
46 47 2.799917 GCTACTGGATAAGAGCGGTGTG 60.800 54.545 0.00 0.00 0.00 3.82
47 48 1.409427 GCTACTGGATAAGAGCGGTGT 59.591 52.381 0.00 0.00 0.00 4.16
48 49 2.141535 GCTACTGGATAAGAGCGGTG 57.858 55.000 0.00 0.00 0.00 4.94
52 53 2.353208 CCCATCGCTACTGGATAAGAGC 60.353 54.545 0.00 0.00 35.70 4.09
53 54 3.057174 GTCCCATCGCTACTGGATAAGAG 60.057 52.174 0.00 0.00 35.70 2.85
54 55 2.891580 GTCCCATCGCTACTGGATAAGA 59.108 50.000 0.00 0.00 35.70 2.10
55 56 2.628178 TGTCCCATCGCTACTGGATAAG 59.372 50.000 0.00 0.00 35.70 1.73
56 57 2.673258 TGTCCCATCGCTACTGGATAA 58.327 47.619 0.00 0.00 35.70 1.75
57 58 2.375014 TGTCCCATCGCTACTGGATA 57.625 50.000 0.00 0.00 35.70 2.59
58 59 1.345741 CATGTCCCATCGCTACTGGAT 59.654 52.381 0.00 0.00 35.70 3.41
59 60 0.752658 CATGTCCCATCGCTACTGGA 59.247 55.000 0.00 0.00 35.70 3.86
60 61 0.465705 ACATGTCCCATCGCTACTGG 59.534 55.000 0.00 0.00 0.00 4.00
61 62 1.136891 TGACATGTCCCATCGCTACTG 59.863 52.381 22.85 0.00 0.00 2.74
62 63 1.485124 TGACATGTCCCATCGCTACT 58.515 50.000 22.85 0.00 0.00 2.57
63 64 1.933853 GTTGACATGTCCCATCGCTAC 59.066 52.381 22.85 0.60 0.00 3.58
64 65 1.552792 TGTTGACATGTCCCATCGCTA 59.447 47.619 22.85 0.00 0.00 4.26
65 66 0.324614 TGTTGACATGTCCCATCGCT 59.675 50.000 22.85 0.00 0.00 4.93
66 67 1.382522 ATGTTGACATGTCCCATCGC 58.617 50.000 22.85 7.29 34.83 4.58
67 68 3.009026 TCAATGTTGACATGTCCCATCG 58.991 45.455 22.85 13.87 36.56 3.84
68 69 4.460382 ACTTCAATGTTGACATGTCCCATC 59.540 41.667 22.85 10.74 36.83 3.51
69 70 4.219070 CACTTCAATGTTGACATGTCCCAT 59.781 41.667 22.85 19.91 36.83 4.00
70 71 3.569277 CACTTCAATGTTGACATGTCCCA 59.431 43.478 22.85 18.62 36.83 4.37
71 72 3.820467 TCACTTCAATGTTGACATGTCCC 59.180 43.478 22.85 13.68 36.83 4.46
72 73 4.275689 TGTCACTTCAATGTTGACATGTCC 59.724 41.667 22.85 9.16 36.83 4.02
73 74 5.422666 TGTCACTTCAATGTTGACATGTC 57.577 39.130 19.27 19.27 36.83 3.06
74 75 5.833406 TTGTCACTTCAATGTTGACATGT 57.167 34.783 0.00 0.00 38.95 3.21
75 76 6.440436 TGATTGTCACTTCAATGTTGACATG 58.560 36.000 12.99 0.00 38.95 3.21
76 77 6.638096 TGATTGTCACTTCAATGTTGACAT 57.362 33.333 12.99 0.00 38.95 3.06
77 78 6.264832 GTTGATTGTCACTTCAATGTTGACA 58.735 36.000 9.73 9.73 38.03 3.58
78 79 5.687285 GGTTGATTGTCACTTCAATGTTGAC 59.313 40.000 0.00 5.77 38.03 3.18
79 80 5.593909 AGGTTGATTGTCACTTCAATGTTGA 59.406 36.000 0.00 0.00 38.03 3.18
80 81 5.688621 CAGGTTGATTGTCACTTCAATGTTG 59.311 40.000 0.00 0.00 38.03 3.33
81 82 5.593909 TCAGGTTGATTGTCACTTCAATGTT 59.406 36.000 0.00 0.00 38.03 2.71
82 83 5.009010 GTCAGGTTGATTGTCACTTCAATGT 59.991 40.000 0.00 0.00 38.03 2.71
83 84 5.008911 TGTCAGGTTGATTGTCACTTCAATG 59.991 40.000 0.00 0.00 38.03 2.82
84 85 5.132502 TGTCAGGTTGATTGTCACTTCAAT 58.867 37.500 1.77 0.00 40.20 2.57
85 86 4.522114 TGTCAGGTTGATTGTCACTTCAA 58.478 39.130 0.00 0.00 0.00 2.69
86 87 4.149511 TGTCAGGTTGATTGTCACTTCA 57.850 40.909 0.00 0.00 0.00 3.02
87 88 4.756642 TCATGTCAGGTTGATTGTCACTTC 59.243 41.667 0.00 0.00 0.00 3.01
88 89 4.717877 TCATGTCAGGTTGATTGTCACTT 58.282 39.130 0.00 0.00 0.00 3.16
89 90 4.321718 CTCATGTCAGGTTGATTGTCACT 58.678 43.478 0.00 0.00 0.00 3.41
90 91 3.438087 CCTCATGTCAGGTTGATTGTCAC 59.562 47.826 0.00 0.00 0.00 3.67
91 92 3.559811 CCCTCATGTCAGGTTGATTGTCA 60.560 47.826 0.13 0.00 0.00 3.58
92 93 3.012518 CCCTCATGTCAGGTTGATTGTC 58.987 50.000 0.13 0.00 0.00 3.18
93 94 2.644299 TCCCTCATGTCAGGTTGATTGT 59.356 45.455 0.13 0.00 0.00 2.71
94 95 3.276857 CTCCCTCATGTCAGGTTGATTG 58.723 50.000 0.13 0.00 0.00 2.67
95 96 2.915604 ACTCCCTCATGTCAGGTTGATT 59.084 45.455 0.13 0.00 0.00 2.57
96 97 2.238144 CACTCCCTCATGTCAGGTTGAT 59.762 50.000 0.13 0.00 0.00 2.57
102 103 1.222936 GCCCACTCCCTCATGTCAG 59.777 63.158 0.00 0.00 0.00 3.51
105 106 1.687612 CTTGCCCACTCCCTCATGT 59.312 57.895 0.00 0.00 0.00 3.21
107 108 2.311854 CCCTTGCCCACTCCCTCAT 61.312 63.158 0.00 0.00 0.00 2.90
144 145 2.742372 GCACACCCACTAGCACGG 60.742 66.667 0.00 0.00 0.00 4.94
150 151 1.836999 ATCAAGGCGCACACCCACTA 61.837 55.000 10.83 0.00 0.00 2.74
174 175 4.187810 GCCCGTTAACGCCCATGC 62.188 66.667 22.43 14.11 38.18 4.06
184 185 2.380285 GGGATCAAGGGGCCCGTTA 61.380 63.158 28.67 17.14 31.06 3.18
188 189 4.143301 GTGGGGATCAAGGGGCCC 62.143 72.222 17.12 17.12 41.28 5.80
221 222 2.776665 TCCCCTTGAATCCCTCCTTAG 58.223 52.381 0.00 0.00 0.00 2.18
226 227 2.023984 ACCAAATCCCCTTGAATCCCTC 60.024 50.000 0.00 0.00 0.00 4.30
235 236 1.606313 CGTGGCACCAAATCCCCTT 60.606 57.895 12.86 0.00 0.00 3.95
259 260 4.168760 GTGAAATGCTGGCAGTGTAATTC 58.831 43.478 17.16 13.40 0.00 2.17
266 267 3.555586 GGAAAATGTGAAATGCTGGCAGT 60.556 43.478 17.16 0.00 0.00 4.40
267 268 2.997986 GGAAAATGTGAAATGCTGGCAG 59.002 45.455 10.94 10.94 0.00 4.85
292 293 0.962489 CTGCCTCCTCCCGTACATAG 59.038 60.000 0.00 0.00 0.00 2.23
293 294 0.469331 CCTGCCTCCTCCCGTACATA 60.469 60.000 0.00 0.00 0.00 2.29
294 295 1.762460 CCTGCCTCCTCCCGTACAT 60.762 63.158 0.00 0.00 0.00 2.29
296 297 0.685458 TTACCTGCCTCCTCCCGTAC 60.685 60.000 0.00 0.00 0.00 3.67
299 300 0.976073 TTCTTACCTGCCTCCTCCCG 60.976 60.000 0.00 0.00 0.00 5.14
300 301 1.210722 CTTTCTTACCTGCCTCCTCCC 59.789 57.143 0.00 0.00 0.00 4.30
301 302 2.188817 TCTTTCTTACCTGCCTCCTCC 58.811 52.381 0.00 0.00 0.00 4.30
303 304 3.252351 AGTTCTTTCTTACCTGCCTCCT 58.748 45.455 0.00 0.00 0.00 3.69
309 310 8.608844 ATGAGTGTAAAGTTCTTTCTTACCTG 57.391 34.615 0.87 0.00 0.00 4.00
310 311 9.628500 AAATGAGTGTAAAGTTCTTTCTTACCT 57.372 29.630 0.87 0.00 0.00 3.08
339 340 3.119065 CGAGGAAGAAGGAAGGGTAAGAC 60.119 52.174 0.00 0.00 0.00 3.01
350 351 3.775654 AGGGCGCGAGGAAGAAGG 61.776 66.667 12.10 0.00 0.00 3.46
370 371 2.433838 GAGCGCAAGAGCAGCAGA 60.434 61.111 11.47 0.00 42.27 4.26
400 401 3.418068 GCACACGTGGAGAGCAGC 61.418 66.667 21.57 8.01 0.00 5.25
420 421 0.981183 ACGGTGGAGCTTGGTTATGA 59.019 50.000 0.00 0.00 0.00 2.15
448 449 1.791555 GCGTCTTTCCATGACAATGCG 60.792 52.381 0.00 0.00 34.37 4.73
473 477 1.901650 CTGACCGTTCTTCGCCAAGC 61.902 60.000 0.00 0.00 38.35 4.01
474 478 1.901650 GCTGACCGTTCTTCGCCAAG 61.902 60.000 0.00 0.00 38.35 3.61
495 499 3.508840 CCCTTGCCGGCGTTGATC 61.509 66.667 23.90 0.00 0.00 2.92
579 591 4.101448 GTCGGTCCAGCAGGCCAT 62.101 66.667 5.01 0.00 32.55 4.40
589 601 1.737008 GAAGTCGGCAAGTCGGTCC 60.737 63.158 0.00 0.00 0.00 4.46
744 756 9.055248 GCGCATTCTAATTGATTGTTGATATAC 57.945 33.333 0.30 0.00 0.00 1.47
783 924 7.806690 TGAAGTACTTCACATGATTTACTTGC 58.193 34.615 30.07 3.47 43.90 4.01
834 976 9.570468 TCCGTAACAGAATATAAGTAGTGATCT 57.430 33.333 0.00 0.00 0.00 2.75
837 979 8.573885 CCATCCGTAACAGAATATAAGTAGTGA 58.426 37.037 0.00 0.00 0.00 3.41
838 980 8.573885 TCCATCCGTAACAGAATATAAGTAGTG 58.426 37.037 0.00 0.00 0.00 2.74
839 981 8.701908 TCCATCCGTAACAGAATATAAGTAGT 57.298 34.615 0.00 0.00 0.00 2.73
840 982 8.794553 ACTCCATCCGTAACAGAATATAAGTAG 58.205 37.037 0.00 0.00 0.00 2.57
841 983 8.701908 ACTCCATCCGTAACAGAATATAAGTA 57.298 34.615 0.00 0.00 0.00 2.24
842 984 7.598759 ACTCCATCCGTAACAGAATATAAGT 57.401 36.000 0.00 0.00 0.00 2.24
843 985 8.794553 AGTACTCCATCCGTAACAGAATATAAG 58.205 37.037 0.00 0.00 0.00 1.73
844 986 8.701908 AGTACTCCATCCGTAACAGAATATAA 57.298 34.615 0.00 0.00 0.00 0.98
845 987 9.797642 TTAGTACTCCATCCGTAACAGAATATA 57.202 33.333 0.00 0.00 0.00 0.86
846 988 8.701908 TTAGTACTCCATCCGTAACAGAATAT 57.298 34.615 0.00 0.00 0.00 1.28
847 989 8.701908 ATTAGTACTCCATCCGTAACAGAATA 57.298 34.615 0.00 0.00 0.00 1.75
848 990 7.598759 ATTAGTACTCCATCCGTAACAGAAT 57.401 36.000 0.00 0.00 0.00 2.40
849 991 7.414222 AATTAGTACTCCATCCGTAACAGAA 57.586 36.000 0.00 0.00 0.00 3.02
850 992 7.414222 AAATTAGTACTCCATCCGTAACAGA 57.586 36.000 0.00 0.00 0.00 3.41
851 993 8.192774 TGTAAATTAGTACTCCATCCGTAACAG 58.807 37.037 0.00 0.00 0.00 3.16
852 994 8.065473 TGTAAATTAGTACTCCATCCGTAACA 57.935 34.615 0.00 0.00 0.00 2.41
853 995 8.408601 TCTGTAAATTAGTACTCCATCCGTAAC 58.591 37.037 0.00 0.00 0.00 2.50
854 996 8.523915 TCTGTAAATTAGTACTCCATCCGTAA 57.476 34.615 0.00 0.00 0.00 3.18
855 997 8.523915 TTCTGTAAATTAGTACTCCATCCGTA 57.476 34.615 0.00 0.00 0.00 4.02
856 998 7.414222 TTCTGTAAATTAGTACTCCATCCGT 57.586 36.000 0.00 0.00 0.00 4.69
857 999 7.762615 TGTTTCTGTAAATTAGTACTCCATCCG 59.237 37.037 0.00 0.00 0.00 4.18
858 1000 9.614792 ATGTTTCTGTAAATTAGTACTCCATCC 57.385 33.333 0.00 0.00 0.00 3.51
860 1002 9.959721 ACATGTTTCTGTAAATTAGTACTCCAT 57.040 29.630 0.00 0.00 0.00 3.41
883 1026 5.659440 AATTTCGGCCAAATGAAGTACAT 57.341 34.783 2.24 0.00 41.45 2.29
897 1040 6.418956 GGAGAAAACTTTCAAAAATTTCGGC 58.581 36.000 5.07 0.00 39.61 5.54
954 2558 3.532155 CTTCCGCTCCTCTCCCCG 61.532 72.222 0.00 0.00 0.00 5.73
955 2559 2.042843 TCTTCCGCTCCTCTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
982 2586 2.480555 GTTCAATCGCACGCCCAG 59.519 61.111 0.00 0.00 0.00 4.45
1061 2666 1.597854 CTCGCTGTTTGCCTCACCA 60.598 57.895 0.00 0.00 38.78 4.17
1074 2679 2.533266 ACACACAAACAGATCTCGCT 57.467 45.000 0.00 0.00 0.00 4.93
1088 2693 0.037605 AGCACGGCTAGGTTACACAC 60.038 55.000 0.00 0.00 36.99 3.82
1090 2695 0.531200 AGAGCACGGCTAGGTTACAC 59.469 55.000 0.00 0.00 39.88 2.90
1216 2821 3.604667 TGCTTTTGGTGGGCTGCG 61.605 61.111 0.00 0.00 0.00 5.18
1220 2825 0.825840 TACTGGTGCTTTTGGTGGGC 60.826 55.000 0.00 0.00 0.00 5.36
1228 2833 0.178992 TTGGCTGCTACTGGTGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
1234 2839 3.503363 GCGCTTGGCTGCTACTGG 61.503 66.667 0.00 0.00 39.11 4.00
1648 3287 4.779733 ACGATGGGCTCCGGGAGT 62.780 66.667 24.30 5.21 31.39 3.85
1981 3623 2.275547 GACGTACCGCATCGTCCCTT 62.276 60.000 11.41 0.00 46.83 3.95
2053 3695 2.049063 GGCAGCGACGTGAACTCT 60.049 61.111 0.00 0.00 0.00 3.24
2096 3738 2.266055 CTGCTCCCGGAACTGGAC 59.734 66.667 0.73 0.00 36.62 4.02
2179 3830 1.321474 TGCACTCAAGAAGCCCTTTG 58.679 50.000 0.00 0.00 31.42 2.77
2401 4145 4.967575 ACAAAAACAAGTGCGTATTCTTCG 59.032 37.500 0.00 0.00 0.00 3.79
2412 4160 6.189567 ACGATCGAAGTTACAAAAACAAGTG 58.810 36.000 24.34 0.00 0.00 3.16
2420 4168 9.955208 ACATATACATACGATCGAAGTTACAAA 57.045 29.630 24.34 2.02 0.00 2.83
2421 4169 9.389570 CACATATACATACGATCGAAGTTACAA 57.610 33.333 24.34 2.38 0.00 2.41
2422 4170 8.562052 ACACATATACATACGATCGAAGTTACA 58.438 33.333 24.34 2.04 0.00 2.41
2423 4171 8.945758 ACACATATACATACGATCGAAGTTAC 57.054 34.615 24.34 0.00 0.00 2.50
2425 4173 9.556030 CATACACATATACATACGATCGAAGTT 57.444 33.333 24.34 0.83 0.00 2.66
2426 4174 8.727910 ACATACACATATACATACGATCGAAGT 58.272 33.333 24.34 18.00 0.00 3.01
2427 4175 9.211556 GACATACACATATACATACGATCGAAG 57.788 37.037 24.34 13.01 0.00 3.79
2428 4176 8.723311 TGACATACACATATACATACGATCGAA 58.277 33.333 24.34 1.67 0.00 3.71
2429 4177 8.259049 TGACATACACATATACATACGATCGA 57.741 34.615 24.34 5.87 0.00 3.59
2494 4246 9.921637 CTAATAGAGGATACCAGAGAATGTTTC 57.078 37.037 0.00 0.00 37.17 2.78
2502 4254 7.069208 TGCATATGCTAATAGAGGATACCAGAG 59.931 40.741 27.13 0.00 40.87 3.35
2503 4255 6.897413 TGCATATGCTAATAGAGGATACCAGA 59.103 38.462 27.13 0.00 40.87 3.86
2506 4258 7.118496 AGTGCATATGCTAATAGAGGATACC 57.882 40.000 27.13 0.00 40.87 2.73
2510 4262 6.670695 TTGAGTGCATATGCTAATAGAGGA 57.329 37.500 27.13 1.78 42.66 3.71
2513 4265 8.159447 AGGAATTTGAGTGCATATGCTAATAGA 58.841 33.333 27.13 10.81 42.66 1.98
2514 4266 8.332996 AGGAATTTGAGTGCATATGCTAATAG 57.667 34.615 27.13 0.00 42.66 1.73
2515 4267 8.696043 AAGGAATTTGAGTGCATATGCTAATA 57.304 30.769 27.13 5.26 42.66 0.98
2518 4270 6.830324 AGAAAGGAATTTGAGTGCATATGCTA 59.170 34.615 27.13 11.93 42.66 3.49
2519 4271 5.655532 AGAAAGGAATTTGAGTGCATATGCT 59.344 36.000 27.13 9.28 42.66 3.79
2551 4380 3.133141 GGCTTGAACCCTCCTATGATC 57.867 52.381 0.00 0.00 0.00 2.92
2562 4391 0.111639 TAGTGGGTTGGGCTTGAACC 59.888 55.000 0.00 0.00 42.00 3.62
2569 4400 2.637872 TCAGCTATATAGTGGGTTGGGC 59.362 50.000 11.38 0.00 0.00 5.36
2587 4418 4.904241 AGGTTTCTTCAGTTCATCCTCAG 58.096 43.478 0.00 0.00 0.00 3.35
2619 4450 7.589574 TCTTTGCACTTTCCAAAGTTTTTAC 57.410 32.000 12.05 0.00 46.52 2.01
2620 4451 8.091449 TCTTCTTTGCACTTTCCAAAGTTTTTA 58.909 29.630 12.05 0.00 46.52 1.52
2680 4511 2.592194 TCTCAGTGACGCGTTGTAATC 58.408 47.619 15.53 0.00 0.00 1.75
2730 4568 1.355720 CAACAGGGGAGGGATGAACTT 59.644 52.381 0.00 0.00 0.00 2.66
2838 4712 6.874134 ACACTATTTTATCAAGCGTCAGAACT 59.126 34.615 0.00 0.00 0.00 3.01
2902 4818 6.560253 TTAGTTGGCTCTGTTCATTCTTTC 57.440 37.500 0.00 0.00 0.00 2.62
2943 4859 4.309933 GCTTGACCCAATTTTTCAGAAGG 58.690 43.478 0.00 0.00 0.00 3.46
2950 4866 2.036992 TCATGCGCTTGACCCAATTTTT 59.963 40.909 20.86 0.00 0.00 1.94
2957 4873 1.503542 CTGTTCATGCGCTTGACCC 59.496 57.895 23.98 17.52 0.00 4.46
2966 4882 2.056223 ATGCAGGCCCTGTTCATGC 61.056 57.895 13.35 0.41 37.40 4.06
2993 4909 6.546772 GTCTTTCTACTGGTAGTGGTATAGCT 59.453 42.308 3.20 0.00 34.84 3.32
3111 5031 4.161565 ACCTTAGCCAATACTGACGAATCA 59.838 41.667 0.00 0.00 0.00 2.57
3112 5032 4.694339 ACCTTAGCCAATACTGACGAATC 58.306 43.478 0.00 0.00 0.00 2.52
3114 5034 4.020928 TGAACCTTAGCCAATACTGACGAA 60.021 41.667 0.00 0.00 0.00 3.85
3115 5035 3.512329 TGAACCTTAGCCAATACTGACGA 59.488 43.478 0.00 0.00 0.00 4.20
3116 5036 3.857052 TGAACCTTAGCCAATACTGACG 58.143 45.455 0.00 0.00 0.00 4.35
3117 5037 3.623510 GCTGAACCTTAGCCAATACTGAC 59.376 47.826 0.00 0.00 35.15 3.51
3118 5038 3.263170 TGCTGAACCTTAGCCAATACTGA 59.737 43.478 0.00 0.00 40.42 3.41
3119 5039 3.609853 TGCTGAACCTTAGCCAATACTG 58.390 45.455 0.00 0.00 40.42 2.74
3120 5040 3.370953 CCTGCTGAACCTTAGCCAATACT 60.371 47.826 0.00 0.00 40.42 2.12
3121 5041 2.945668 CCTGCTGAACCTTAGCCAATAC 59.054 50.000 0.00 0.00 40.42 1.89
3122 5042 2.683742 GCCTGCTGAACCTTAGCCAATA 60.684 50.000 0.00 0.00 40.42 1.90
3123 5043 1.957113 GCCTGCTGAACCTTAGCCAAT 60.957 52.381 0.00 0.00 40.42 3.16
3124 5044 0.609131 GCCTGCTGAACCTTAGCCAA 60.609 55.000 0.00 0.00 40.42 4.52
3125 5045 1.002134 GCCTGCTGAACCTTAGCCA 60.002 57.895 0.00 0.00 40.42 4.75
3127 5047 1.750780 GGGCCTGCTGAACCTTAGC 60.751 63.158 0.84 0.00 41.49 3.09
3128 5048 0.678048 GTGGGCCTGCTGAACCTTAG 60.678 60.000 4.53 0.00 0.00 2.18
3129 5049 1.133809 AGTGGGCCTGCTGAACCTTA 61.134 55.000 4.53 0.00 0.00 2.69
3130 5050 2.011617 AAGTGGGCCTGCTGAACCTT 62.012 55.000 4.53 0.00 0.00 3.50
3131 5051 2.417558 GAAGTGGGCCTGCTGAACCT 62.418 60.000 4.53 0.00 0.00 3.50
3132 5052 1.973812 GAAGTGGGCCTGCTGAACC 60.974 63.158 4.53 0.00 0.00 3.62
3133 5053 0.324943 TAGAAGTGGGCCTGCTGAAC 59.675 55.000 4.53 0.00 29.15 3.18
3134 5054 0.324943 GTAGAAGTGGGCCTGCTGAA 59.675 55.000 4.53 0.00 29.15 3.02
3135 5055 0.835971 TGTAGAAGTGGGCCTGCTGA 60.836 55.000 4.53 0.00 29.15 4.26
3136 5056 0.036732 TTGTAGAAGTGGGCCTGCTG 59.963 55.000 4.53 0.00 29.15 4.41
3137 5057 0.771127 TTTGTAGAAGTGGGCCTGCT 59.229 50.000 4.53 0.00 32.09 4.24
3138 5058 1.168714 CTTTGTAGAAGTGGGCCTGC 58.831 55.000 4.53 0.00 0.00 4.85
3139 5059 1.614317 CCCTTTGTAGAAGTGGGCCTG 60.614 57.143 4.53 0.00 0.00 4.85
3140 5060 0.698818 CCCTTTGTAGAAGTGGGCCT 59.301 55.000 4.53 0.00 0.00 5.19
3141 5061 3.266240 CCCTTTGTAGAAGTGGGCC 57.734 57.895 0.00 0.00 0.00 5.80
3143 5063 1.676014 CGAGCCCTTTGTAGAAGTGGG 60.676 57.143 7.98 7.98 40.74 4.61
3144 5064 1.676014 CCGAGCCCTTTGTAGAAGTGG 60.676 57.143 0.00 0.00 0.00 4.00
3145 5065 1.726853 CCGAGCCCTTTGTAGAAGTG 58.273 55.000 0.00 0.00 0.00 3.16
3146 5066 0.036294 GCCGAGCCCTTTGTAGAAGT 60.036 55.000 0.00 0.00 0.00 3.01
3147 5067 0.036388 TGCCGAGCCCTTTGTAGAAG 60.036 55.000 0.00 0.00 0.00 2.85
3148 5068 0.398696 TTGCCGAGCCCTTTGTAGAA 59.601 50.000 0.00 0.00 0.00 2.10
3149 5069 0.321298 GTTGCCGAGCCCTTTGTAGA 60.321 55.000 0.00 0.00 0.00 2.59
3150 5070 1.305930 GGTTGCCGAGCCCTTTGTAG 61.306 60.000 0.00 0.00 0.00 2.74
3151 5071 1.302993 GGTTGCCGAGCCCTTTGTA 60.303 57.895 0.00 0.00 0.00 2.41
3152 5072 1.774894 TAGGTTGCCGAGCCCTTTGT 61.775 55.000 0.00 0.00 0.00 2.83
3153 5073 0.394352 ATAGGTTGCCGAGCCCTTTG 60.394 55.000 0.00 0.00 0.00 2.77
3154 5074 0.107165 GATAGGTTGCCGAGCCCTTT 60.107 55.000 0.00 0.00 0.00 3.11
3155 5075 1.527370 GATAGGTTGCCGAGCCCTT 59.473 57.895 0.00 0.00 0.00 3.95
3156 5076 2.444256 GGATAGGTTGCCGAGCCCT 61.444 63.158 0.00 0.00 28.37 5.19
3157 5077 1.119574 TAGGATAGGTTGCCGAGCCC 61.120 60.000 0.00 0.00 35.29 5.19
3158 5078 0.318762 CTAGGATAGGTTGCCGAGCC 59.681 60.000 0.00 0.00 34.92 4.70
3159 5079 0.319986 GCTAGGATAGGTTGCCGAGC 60.320 60.000 0.00 0.00 43.77 5.03
3160 5080 0.318762 GGCTAGGATAGGTTGCCGAG 59.681 60.000 0.00 0.00 39.70 4.63
3161 5081 0.397957 TGGCTAGGATAGGTTGCCGA 60.398 55.000 0.00 0.00 45.90 5.54
3162 5082 0.468226 TTGGCTAGGATAGGTTGCCG 59.532 55.000 0.00 0.00 45.90 5.69
3163 5083 2.959465 ATTGGCTAGGATAGGTTGCC 57.041 50.000 0.00 0.00 39.70 4.52
3164 5084 4.625607 ACTATTGGCTAGGATAGGTTGC 57.374 45.455 0.00 0.00 39.70 4.17
3165 5085 5.230942 CGAACTATTGGCTAGGATAGGTTG 58.769 45.833 0.00 0.00 39.70 3.77
3166 5086 4.283722 CCGAACTATTGGCTAGGATAGGTT 59.716 45.833 0.00 0.00 39.70 3.50
3167 5087 3.833070 CCGAACTATTGGCTAGGATAGGT 59.167 47.826 0.00 0.00 39.70 3.08
3168 5088 4.087182 TCCGAACTATTGGCTAGGATAGG 58.913 47.826 0.00 0.00 39.70 2.57
3169 5089 5.723672 TTCCGAACTATTGGCTAGGATAG 57.276 43.478 0.00 0.00 43.09 2.08
3170 5090 6.488769 TTTTCCGAACTATTGGCTAGGATA 57.511 37.500 0.00 0.00 0.00 2.59
3171 5091 5.367945 TTTTCCGAACTATTGGCTAGGAT 57.632 39.130 0.00 0.00 0.00 3.24
3172 5092 4.829872 TTTTCCGAACTATTGGCTAGGA 57.170 40.909 0.00 0.00 0.00 2.94
3261 5181 4.942852 TGCATTCAAAAGTTTACACCTGG 58.057 39.130 0.00 0.00 0.00 4.45
3267 5187 8.063630 CCTGTCAAAATGCATTCAAAAGTTTAC 58.936 33.333 13.38 4.71 0.00 2.01
3275 5195 6.164876 CCATTACCTGTCAAAATGCATTCAA 58.835 36.000 13.38 0.00 30.81 2.69
3299 5219 4.058817 CGCACCAGGTTAATTAGATCTCC 58.941 47.826 0.00 0.00 0.00 3.71
3306 5226 1.557832 AGCCTCGCACCAGGTTAATTA 59.442 47.619 0.00 0.00 35.72 1.40
3307 5227 0.328258 AGCCTCGCACCAGGTTAATT 59.672 50.000 0.00 0.00 35.72 1.40
3308 5228 1.200519 TAGCCTCGCACCAGGTTAAT 58.799 50.000 0.00 0.00 35.72 1.40
3309 5229 1.134521 CATAGCCTCGCACCAGGTTAA 60.135 52.381 0.00 0.00 33.35 2.01
3310 5230 0.464036 CATAGCCTCGCACCAGGTTA 59.536 55.000 0.00 0.00 35.72 2.85
3323 5243 7.792374 TTGTTTCAGAGATATGAACATAGCC 57.208 36.000 6.48 0.20 38.87 3.93
3373 5293 4.287552 ACCGATCACCAGATTAGGTAGTT 58.712 43.478 0.00 0.00 41.03 2.24
3434 5354 2.030946 GCGACATAAGCATGTTGTCTCC 59.969 50.000 14.09 5.83 45.58 3.71
3449 5369 8.649973 TTTTTGTATTTTTGGTTAAGCGACAT 57.350 26.923 0.00 0.00 0.00 3.06
3454 5374 8.761497 GTCCTCTTTTTGTATTTTTGGTTAAGC 58.239 33.333 0.00 0.00 0.00 3.09
3521 5442 1.005450 TCACTAAAACAGATGGGGCCC 59.995 52.381 18.17 18.17 0.00 5.80
3535 5456 3.887621 AGACAGCGGCTTAATCACTAA 57.112 42.857 0.00 0.00 0.00 2.24
3546 5467 4.119862 TCTTGATGTAAATAGACAGCGGC 58.880 43.478 0.00 0.00 38.59 6.53
3554 5475 6.039047 AGCCACATTGCTCTTGATGTAAATAG 59.961 38.462 0.00 0.00 36.75 1.73
3559 5480 3.354948 AGCCACATTGCTCTTGATGTA 57.645 42.857 0.00 0.00 36.75 2.29
3566 5487 0.694771 TCTCCAAGCCACATTGCTCT 59.305 50.000 0.00 0.00 41.80 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.