Multiple sequence alignment - TraesCS5D01G451100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G451100 chr5D 100.000 4206 0 0 1 4206 499431432 499427227 0.000000e+00 7768.0
1 TraesCS5D01G451100 chr5A 89.568 3518 237 51 8 3451 623575072 623571611 0.000000e+00 4344.0
2 TraesCS5D01G451100 chr5A 88.499 913 81 16 957 1863 381503018 381502124 0.000000e+00 1083.0
3 TraesCS5D01G451100 chr5A 86.765 408 29 11 3808 4199 623569488 623569090 8.350000e-117 431.0
4 TraesCS5D01G451100 chr5A 95.312 64 2 1 3514 3577 687976779 687976841 2.680000e-17 100.0
5 TraesCS5D01G451100 chr5B 90.909 1023 49 13 2422 3437 620019194 620018209 0.000000e+00 1334.0
6 TraesCS5D01G451100 chr5B 84.009 1382 166 38 856 2202 620021086 620019725 0.000000e+00 1277.0
7 TraesCS5D01G451100 chr5B 86.101 849 67 23 3 840 620021957 620021149 0.000000e+00 867.0
8 TraesCS5D01G451100 chr5B 100.000 37 0 0 3988 4024 620017783 620017747 7.550000e-08 69.4
9 TraesCS5D01G451100 chr7A 88.050 795 82 9 958 1747 648535653 648534867 0.000000e+00 929.0
10 TraesCS5D01G451100 chr7A 87.481 655 69 11 1214 1863 220922950 220922304 0.000000e+00 743.0
11 TraesCS5D01G451100 chr7A 87.462 654 70 10 1214 1863 661782020 661782665 0.000000e+00 743.0
12 TraesCS5D01G451100 chr7A 88.168 262 22 5 957 1218 220941821 220941569 1.900000e-78 303.0
13 TraesCS5D01G451100 chr3A 87.195 656 72 8 1214 1863 31067619 31066970 0.000000e+00 736.0
14 TraesCS5D01G451100 chr1A 87.176 655 70 11 1214 1863 526611068 526610423 0.000000e+00 732.0
15 TraesCS5D01G451100 chr3B 83.088 680 84 21 1038 1700 28675612 28676277 1.300000e-164 590.0
16 TraesCS5D01G451100 chr3B 87.124 466 45 12 1404 1863 681350692 681351148 8.060000e-142 514.0
17 TraesCS5D01G451100 chr3B 99.130 230 2 0 3576 3805 275341307 275341536 8.410000e-112 414.0
18 TraesCS5D01G451100 chr4D 99.565 230 1 0 3576 3805 242938173 242938402 1.810000e-113 420.0
19 TraesCS5D01G451100 chr7B 99.130 230 2 0 3576 3805 35087704 35087475 8.410000e-112 414.0
20 TraesCS5D01G451100 chr7B 87.336 229 23 4 1639 1863 679350656 679350882 1.500000e-64 257.0
21 TraesCS5D01G451100 chr2D 99.130 230 2 0 3576 3805 136426015 136426244 8.410000e-112 414.0
22 TraesCS5D01G451100 chr2D 99.130 230 2 0 3576 3805 456319835 456319606 8.410000e-112 414.0
23 TraesCS5D01G451100 chr2D 77.410 332 48 19 1085 1410 286465412 286465102 5.590000e-39 172.0
24 TraesCS5D01G451100 chr1D 99.130 230 2 0 3576 3805 288471165 288470936 8.410000e-112 414.0
25 TraesCS5D01G451100 chr6D 98.276 232 4 0 3576 3807 211675882 211676113 1.410000e-109 407.0
26 TraesCS5D01G451100 chr3D 97.083 240 7 0 3578 3817 417205750 417205511 5.060000e-109 405.0
27 TraesCS5D01G451100 chr2B 98.261 230 4 0 3576 3805 722462148 722462377 1.820000e-108 403.0
28 TraesCS5D01G451100 chr6B 89.352 216 18 4 1652 1863 432007267 432007481 2.490000e-67 267.0
29 TraesCS5D01G451100 chr2A 77.946 331 48 18 1085 1410 357324586 357324896 2.580000e-42 183.0
30 TraesCS5D01G451100 chr1B 89.313 131 11 2 1115 1242 566978269 566978399 1.210000e-35 161.0
31 TraesCS5D01G451100 chrUn 93.750 64 3 1 3514 3577 60594657 60594719 1.240000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G451100 chr5D 499427227 499431432 4205 True 7768.00 7768 100.00000 1 4206 1 chr5D.!!$R1 4205
1 TraesCS5D01G451100 chr5A 623569090 623575072 5982 True 2387.50 4344 88.16650 8 4199 2 chr5A.!!$R2 4191
2 TraesCS5D01G451100 chr5A 381502124 381503018 894 True 1083.00 1083 88.49900 957 1863 1 chr5A.!!$R1 906
3 TraesCS5D01G451100 chr5B 620017747 620021957 4210 True 886.85 1334 90.25475 3 4024 4 chr5B.!!$R1 4021
4 TraesCS5D01G451100 chr7A 648534867 648535653 786 True 929.00 929 88.05000 958 1747 1 chr7A.!!$R3 789
5 TraesCS5D01G451100 chr7A 220922304 220922950 646 True 743.00 743 87.48100 1214 1863 1 chr7A.!!$R1 649
6 TraesCS5D01G451100 chr7A 661782020 661782665 645 False 743.00 743 87.46200 1214 1863 1 chr7A.!!$F1 649
7 TraesCS5D01G451100 chr3A 31066970 31067619 649 True 736.00 736 87.19500 1214 1863 1 chr3A.!!$R1 649
8 TraesCS5D01G451100 chr1A 526610423 526611068 645 True 732.00 732 87.17600 1214 1863 1 chr1A.!!$R1 649
9 TraesCS5D01G451100 chr3B 28675612 28676277 665 False 590.00 590 83.08800 1038 1700 1 chr3B.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 841 0.323957 ACGGGCTAAAAGTGGTCTCC 59.676 55.0 0.0 0.0 0.00 3.71 F
1032 1123 0.688749 GTCCGAAACCCTAGCCCCTA 60.689 60.0 0.0 0.0 0.00 3.53 F
2593 3126 0.947244 CAGCTTTTGGAACAGCGTCT 59.053 50.0 0.0 0.0 42.39 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2648 3183 2.289002 AGCAGAACAAAAGCTGACTTCG 59.711 45.455 0.00 0.0 37.2 3.79 R
2798 3335 4.222145 TCAAGTGATTCCCCAGTAGTACAC 59.778 45.833 2.52 0.0 0.0 2.90 R
3666 4363 0.032017 GGCTAACCTCCTCCTCCTCA 60.032 60.000 0.00 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 5.728637 TGTGTGCTTAGAAAGATGAGAGA 57.271 39.130 0.00 0.00 0.00 3.10
160 161 3.378767 TGGCAACCCACATGCATG 58.621 55.556 25.09 25.09 45.60 4.06
161 162 2.125431 GGCAACCCACATGCATGC 60.125 61.111 26.53 11.82 45.60 4.06
162 163 2.657829 GCAACCCACATGCATGCA 59.342 55.556 26.53 25.04 43.29 3.96
163 164 1.219664 GCAACCCACATGCATGCAT 59.780 52.632 27.46 27.46 43.29 3.96
164 165 0.391927 GCAACCCACATGCATGCATT 60.392 50.000 30.32 18.23 43.29 3.56
165 166 1.134759 GCAACCCACATGCATGCATTA 60.135 47.619 30.32 4.22 43.29 1.90
210 242 8.433421 AGTTAAATATACAATCACGGAACAGG 57.567 34.615 0.00 0.00 0.00 4.00
247 279 1.900351 GGCTTGGCCCATTTCCTTC 59.100 57.895 0.00 0.00 44.06 3.46
249 281 1.341976 GGCTTGGCCCATTTCCTTCTA 60.342 52.381 0.00 0.00 44.06 2.10
259 292 4.950475 CCCATTTCCTTCTACCCTTCTTTC 59.050 45.833 0.00 0.00 0.00 2.62
263 296 7.309438 CCATTTCCTTCTACCCTTCTTTCTTTG 60.309 40.741 0.00 0.00 0.00 2.77
264 297 5.906772 TCCTTCTACCCTTCTTTCTTTGT 57.093 39.130 0.00 0.00 0.00 2.83
266 299 6.296803 TCCTTCTACCCTTCTTTCTTTGTTC 58.703 40.000 0.00 0.00 0.00 3.18
268 301 5.906772 TCTACCCTTCTTTCTTTGTTCCT 57.093 39.130 0.00 0.00 0.00 3.36
269 302 5.866207 TCTACCCTTCTTTCTTTGTTCCTC 58.134 41.667 0.00 0.00 0.00 3.71
320 355 3.131046 CCAATTCCTTCCATTTTCTCCCG 59.869 47.826 0.00 0.00 0.00 5.14
338 373 7.931578 TCTCCCGCATTTTCTCTAATTTTTA 57.068 32.000 0.00 0.00 0.00 1.52
365 404 9.821662 ATAACGTTCTTATTTGTTCTACTTTGC 57.178 29.630 2.82 0.00 0.00 3.68
573 612 9.149225 TGACCATTTTATTTCATGCATACAAAC 57.851 29.630 0.00 0.00 0.00 2.93
682 721 9.382275 ACATGTTAAACAAGCAAAATTTTCTCT 57.618 25.926 0.00 0.00 0.00 3.10
722 761 2.811431 TGAAACGAGTTAATGGGCTGTG 59.189 45.455 0.00 0.00 0.00 3.66
734 773 2.497770 GCTGTGCCATGGCCATTC 59.502 61.111 33.44 20.20 41.09 2.67
740 779 4.847198 CTGTGCCATGGCCATTCTATATA 58.153 43.478 33.44 8.21 41.09 0.86
741 780 5.443283 CTGTGCCATGGCCATTCTATATAT 58.557 41.667 33.44 0.00 41.09 0.86
744 783 8.273923 TGTGCCATGGCCATTCTATATATATA 57.726 34.615 33.44 6.19 41.09 0.86
751 790 6.730977 TGGCCATTCTATATATATAGGGAGCC 59.269 42.308 26.72 26.72 38.11 4.70
755 794 7.122948 CCATTCTATATATATAGGGAGCCGTCC 59.877 44.444 23.62 0.00 43.05 4.79
759 798 2.623418 ATATAGGGAGCCGTCCATGA 57.377 50.000 0.00 0.00 46.07 3.07
762 801 1.507140 TAGGGAGCCGTCCATGAAAT 58.493 50.000 0.00 0.00 46.07 2.17
802 841 0.323957 ACGGGCTAAAAGTGGTCTCC 59.676 55.000 0.00 0.00 0.00 3.71
863 951 1.366111 CGAAAACCCATCCGCGTGAT 61.366 55.000 4.92 4.67 0.00 3.06
1013 1104 2.360350 AACCATGGTGAGCGCCTG 60.360 61.111 20.60 0.00 0.00 4.85
1032 1123 0.688749 GTCCGAAACCCTAGCCCCTA 60.689 60.000 0.00 0.00 0.00 3.53
1042 1133 0.977395 CTAGCCCCTAGGTGCCATAC 59.023 60.000 13.15 0.00 34.57 2.39
1250 1345 2.027625 GCAGAAGGTAACGCGCAGT 61.028 57.895 5.73 3.19 46.39 4.40
1274 1369 1.808799 CTCTGCGCTGCGAATCTGT 60.809 57.895 28.07 0.00 0.00 3.41
1340 1435 5.720371 TGATTCGATTTGTGTTGGGATTT 57.280 34.783 0.00 0.00 0.00 2.17
1455 1550 2.805671 TGTAGTTGAATGCCGAACAGTG 59.194 45.455 0.00 0.00 0.00 3.66
1531 1628 3.313012 TGACATCACTGTAGTTTCGGG 57.687 47.619 0.00 0.00 35.14 5.14
1641 1757 3.392769 GCGACGTGCAACCATAATTTA 57.607 42.857 0.00 0.00 45.45 1.40
1648 1764 5.163561 ACGTGCAACCATAATTTATCCCAAG 60.164 40.000 0.00 0.00 0.00 3.61
1657 1773 7.019153 ACCATAATTTATCCCAAGTGGCCTATA 59.981 37.037 3.32 0.00 0.00 1.31
1715 1833 7.083875 TGGTAGATTCTTTTAATCCAAAGCG 57.916 36.000 0.00 0.00 34.26 4.68
1716 1834 6.657541 TGGTAGATTCTTTTAATCCAAAGCGT 59.342 34.615 0.00 0.00 34.26 5.07
1765 1884 9.748708 TTTTATTGCTGCATTAGAATTACATCC 57.251 29.630 1.84 0.00 0.00 3.51
1831 1950 5.962433 ACTTTGGATGCAGATTTTCATCAG 58.038 37.500 0.00 0.00 40.50 2.90
1892 2024 8.786898 TCTATTTTAATCTTCATGGTATGCTGC 58.213 33.333 0.00 0.00 0.00 5.25
1893 2025 7.592885 ATTTTAATCTTCATGGTATGCTGCT 57.407 32.000 0.00 0.00 0.00 4.24
1894 2026 8.696043 ATTTTAATCTTCATGGTATGCTGCTA 57.304 30.769 0.00 0.00 0.00 3.49
1895 2027 7.496529 TTTAATCTTCATGGTATGCTGCTAC 57.503 36.000 0.00 1.13 0.00 3.58
1896 2028 4.970860 ATCTTCATGGTATGCTGCTACT 57.029 40.909 0.00 0.00 0.00 2.57
1897 2029 6.425210 AATCTTCATGGTATGCTGCTACTA 57.575 37.500 0.00 0.00 0.00 1.82
1898 2030 6.617782 ATCTTCATGGTATGCTGCTACTAT 57.382 37.500 0.00 2.15 0.00 2.12
1934 2066 7.609760 TCTTTATGATTGTGTCGCAATACTT 57.390 32.000 11.54 6.82 46.90 2.24
1961 2098 6.585416 TCTGTCAATAATATTGCTCTGCAGA 58.415 36.000 17.19 17.19 40.61 4.26
1974 2111 4.760204 TGCTCTGCAGAATATGATCCATTG 59.240 41.667 18.85 2.06 33.32 2.82
2067 2204 5.702670 TGCTTAAGGAGAAAGTTCAGTCATG 59.297 40.000 4.29 0.00 0.00 3.07
2095 2232 7.388776 TGCTATGCTGCTACTATTTTAATCCAG 59.611 37.037 0.00 0.00 0.00 3.86
2125 2651 4.094739 TGTTCTGATGTGTGTTTCTGTGTG 59.905 41.667 0.00 0.00 0.00 3.82
2126 2652 3.872696 TCTGATGTGTGTTTCTGTGTGT 58.127 40.909 0.00 0.00 0.00 3.72
2134 2660 6.342111 TGTGTGTTTCTGTGTGTCTGTAATA 58.658 36.000 0.00 0.00 0.00 0.98
2139 2665 6.710295 TGTTTCTGTGTGTCTGTAATATGCTT 59.290 34.615 0.00 0.00 0.00 3.91
2142 2668 8.648557 TTCTGTGTGTCTGTAATATGCTTATC 57.351 34.615 0.00 0.00 0.00 1.75
2143 2669 7.781056 TCTGTGTGTCTGTAATATGCTTATCA 58.219 34.615 0.00 0.00 0.00 2.15
2150 2676 7.710907 TGTCTGTAATATGCTTATCACCTGTTC 59.289 37.037 0.00 0.00 0.00 3.18
2171 2697 6.183360 TGTTCTTTGCTCATTCAAGTGTCAAT 60.183 34.615 0.00 0.00 0.00 2.57
2179 2705 8.525316 TGCTCATTCAAGTGTCAATTATTTGAT 58.475 29.630 3.53 0.00 43.49 2.57
2183 2709 8.875803 CATTCAAGTGTCAATTATTTGATTGGG 58.124 33.333 3.53 0.00 43.49 4.12
2185 2711 7.377398 TCAAGTGTCAATTATTTGATTGGGTG 58.623 34.615 3.53 0.90 43.49 4.61
2244 2771 7.500720 TGCCTTGACATGATTCATTATGTAG 57.499 36.000 0.00 0.00 37.16 2.74
2250 2777 8.680039 TGACATGATTCATTATGTAGCAATGA 57.320 30.769 0.00 0.00 37.16 2.57
2282 2810 3.689161 TCATAACTTGTATGCAGGCACAC 59.311 43.478 0.00 0.00 0.00 3.82
2289 2817 2.029200 TGTATGCAGGCACACATTTTGG 60.029 45.455 0.48 0.00 27.37 3.28
2290 2818 1.050204 ATGCAGGCACACATTTTGGT 58.950 45.000 0.00 0.00 0.00 3.67
2291 2819 1.697284 TGCAGGCACACATTTTGGTA 58.303 45.000 0.00 0.00 0.00 3.25
2363 2894 8.402472 TGTATTTTGTTACTCTGTTTGGAGTTG 58.598 33.333 2.47 0.00 43.14 3.16
2370 2901 3.567164 ACTCTGTTTGGAGTTGCTCATTG 59.433 43.478 0.00 0.00 43.14 2.82
2408 2941 6.019779 ACTTGTTTGTTTCTTGTGCACTTA 57.980 33.333 19.41 5.21 0.00 2.24
2558 3091 8.239998 TGTATTTAGCTCTATCTGATCATCACG 58.760 37.037 0.00 0.00 0.00 4.35
2565 3098 6.570186 GCTCTATCTGATCATCACGACTGATT 60.570 42.308 0.00 0.00 34.65 2.57
2592 3125 3.461843 CAGCTTTTGGAACAGCGTC 57.538 52.632 0.00 0.00 42.39 5.19
2593 3126 0.947244 CAGCTTTTGGAACAGCGTCT 59.053 50.000 0.00 0.00 42.39 4.18
2594 3127 2.143122 CAGCTTTTGGAACAGCGTCTA 58.857 47.619 0.00 0.00 42.39 2.59
2595 3128 2.744202 CAGCTTTTGGAACAGCGTCTAT 59.256 45.455 0.00 0.00 42.39 1.98
2596 3129 2.744202 AGCTTTTGGAACAGCGTCTATG 59.256 45.455 0.00 0.00 42.39 2.23
2675 3210 3.193267 TCAGCTTTTGTTCTGCTTTGTGT 59.807 39.130 0.00 0.00 34.51 3.72
2786 3323 8.035448 TCATCTCTCTACTTACTGACTATCCA 57.965 38.462 0.00 0.00 0.00 3.41
2798 3335 4.333649 ACTGACTATCCATTTGCGTGATTG 59.666 41.667 0.00 0.00 0.00 2.67
3046 3586 1.202463 CCTGAGATGATCGGAAGCGTT 60.202 52.381 0.00 0.00 36.25 4.84
3207 3747 3.006247 GGTTCATTCCTCTCAAGTGAGC 58.994 50.000 3.30 0.00 41.80 4.26
3229 3769 5.954150 AGCATATGGTCAGGAAAATTGTCTT 59.046 36.000 0.40 0.00 0.00 3.01
3259 3799 5.160607 TGGAATCCAGTGTTCTTATCGTT 57.839 39.130 0.00 0.00 0.00 3.85
3348 3889 7.004086 TGAACTAATCCTGTTCCAGATTTTGT 58.996 34.615 0.00 0.00 42.04 2.83
3349 3890 7.505585 TGAACTAATCCTGTTCCAGATTTTGTT 59.494 33.333 0.00 0.00 42.04 2.83
3350 3891 7.454260 ACTAATCCTGTTCCAGATTTTGTTC 57.546 36.000 0.00 0.00 32.44 3.18
3351 3892 5.728637 AATCCTGTTCCAGATTTTGTTCC 57.271 39.130 0.00 0.00 32.44 3.62
3352 3893 4.177537 TCCTGTTCCAGATTTTGTTCCA 57.822 40.909 0.00 0.00 32.44 3.53
3353 3894 4.144297 TCCTGTTCCAGATTTTGTTCCAG 58.856 43.478 0.00 0.00 32.44 3.86
3354 3895 4.141274 TCCTGTTCCAGATTTTGTTCCAGA 60.141 41.667 0.00 0.00 32.44 3.86
3355 3896 4.768968 CCTGTTCCAGATTTTGTTCCAGAT 59.231 41.667 0.00 0.00 32.44 2.90
3356 3897 5.244626 CCTGTTCCAGATTTTGTTCCAGATT 59.755 40.000 0.00 0.00 32.44 2.40
3357 3898 6.239402 CCTGTTCCAGATTTTGTTCCAGATTT 60.239 38.462 0.00 0.00 32.44 2.17
3358 3899 7.123355 TGTTCCAGATTTTGTTCCAGATTTT 57.877 32.000 0.00 0.00 0.00 1.82
3359 3900 6.985645 TGTTCCAGATTTTGTTCCAGATTTTG 59.014 34.615 0.00 0.00 0.00 2.44
3377 3918 8.391106 CAGATTTTGAAGTTATCGTAAGGAAGG 58.609 37.037 0.00 0.00 38.47 3.46
3406 3992 5.047802 ACATGTTTATCTCCTTTGGCAGTTG 60.048 40.000 0.00 0.00 0.00 3.16
3410 3996 2.727123 TCTCCTTTGGCAGTTGTCAA 57.273 45.000 0.00 0.00 37.94 3.18
3414 4000 3.030291 TCCTTTGGCAGTTGTCAAATGT 58.970 40.909 14.03 0.00 46.83 2.71
3466 4052 6.531594 TGATCAGATTGCTTTACGTCTAAGTG 59.468 38.462 10.83 3.18 0.00 3.16
3481 4067 8.699283 ACGTCTAAGTGGAGTATTGTTTTATC 57.301 34.615 0.00 0.00 0.00 1.75
3507 4099 2.213499 GAACGGTGCTTGGGATGATAG 58.787 52.381 0.00 0.00 0.00 2.08
3514 4106 3.567164 GTGCTTGGGATGATAGAATGGTG 59.433 47.826 0.00 0.00 0.00 4.17
3516 4108 3.817647 GCTTGGGATGATAGAATGGTGAC 59.182 47.826 0.00 0.00 0.00 3.67
3517 4109 4.392940 CTTGGGATGATAGAATGGTGACC 58.607 47.826 0.00 0.00 0.00 4.02
3518 4110 3.392730 TGGGATGATAGAATGGTGACCA 58.607 45.455 6.84 6.84 38.19 4.02
3520 4112 4.042062 TGGGATGATAGAATGGTGACCATC 59.958 45.833 18.84 11.33 44.40 3.51
3521 4113 4.248859 GGATGATAGAATGGTGACCATCG 58.751 47.826 18.84 0.00 44.40 3.84
3522 4114 3.751479 TGATAGAATGGTGACCATCGG 57.249 47.619 18.84 0.00 44.40 4.18
3523 4115 2.224281 TGATAGAATGGTGACCATCGGC 60.224 50.000 18.84 10.48 44.40 5.54
3524 4116 1.496060 TAGAATGGTGACCATCGGCT 58.504 50.000 18.84 16.85 44.40 5.52
3526 4118 1.837439 AGAATGGTGACCATCGGCTAA 59.163 47.619 18.84 0.00 44.40 3.09
3527 4119 1.940613 GAATGGTGACCATCGGCTAAC 59.059 52.381 18.84 0.62 44.40 2.34
3529 4121 0.535335 TGGTGACCATCGGCTAACTC 59.465 55.000 0.00 0.00 0.00 3.01
3531 4123 1.471676 GGTGACCATCGGCTAACTCTG 60.472 57.143 0.00 0.00 0.00 3.35
3533 4125 1.476891 TGACCATCGGCTAACTCTGTC 59.523 52.381 0.00 0.00 0.00 3.51
3534 4126 1.476891 GACCATCGGCTAACTCTGTCA 59.523 52.381 0.00 0.00 0.00 3.58
3535 4127 1.478510 ACCATCGGCTAACTCTGTCAG 59.521 52.381 0.00 0.00 0.00 3.51
3536 4128 1.751351 CCATCGGCTAACTCTGTCAGA 59.249 52.381 1.78 1.78 0.00 3.27
3537 4129 2.363680 CCATCGGCTAACTCTGTCAGAT 59.636 50.000 2.22 0.00 0.00 2.90
3538 4130 3.551863 CCATCGGCTAACTCTGTCAGATC 60.552 52.174 2.22 0.00 0.00 2.75
3539 4131 2.025155 TCGGCTAACTCTGTCAGATCC 58.975 52.381 2.22 0.00 0.00 3.36
3541 4133 2.111384 GGCTAACTCTGTCAGATCCCA 58.889 52.381 2.22 0.00 0.00 4.37
3542 4134 2.703007 GGCTAACTCTGTCAGATCCCAT 59.297 50.000 2.22 0.00 0.00 4.00
3543 4135 3.898123 GGCTAACTCTGTCAGATCCCATA 59.102 47.826 2.22 0.00 0.00 2.74
3544 4136 4.262249 GGCTAACTCTGTCAGATCCCATAC 60.262 50.000 2.22 0.00 0.00 2.39
3546 4138 3.697190 ACTCTGTCAGATCCCATACCT 57.303 47.619 2.22 0.00 0.00 3.08
3547 4139 3.571590 ACTCTGTCAGATCCCATACCTC 58.428 50.000 2.22 0.00 0.00 3.85
3548 4140 3.052566 ACTCTGTCAGATCCCATACCTCA 60.053 47.826 2.22 0.00 0.00 3.86
3549 4141 3.963374 CTCTGTCAGATCCCATACCTCAA 59.037 47.826 2.22 0.00 0.00 3.02
3551 4143 3.708631 CTGTCAGATCCCATACCTCAAGT 59.291 47.826 0.00 0.00 0.00 3.16
3552 4144 4.104086 TGTCAGATCCCATACCTCAAGTT 58.896 43.478 0.00 0.00 0.00 2.66
3553 4145 4.080919 TGTCAGATCCCATACCTCAAGTTG 60.081 45.833 0.00 0.00 0.00 3.16
3554 4146 4.080863 GTCAGATCCCATACCTCAAGTTGT 60.081 45.833 2.11 0.00 0.00 3.32
3555 4147 5.128827 GTCAGATCCCATACCTCAAGTTGTA 59.871 44.000 2.11 0.00 0.00 2.41
3556 4148 5.724370 TCAGATCCCATACCTCAAGTTGTAA 59.276 40.000 2.11 0.00 0.00 2.41
3557 4149 6.386927 TCAGATCCCATACCTCAAGTTGTAAT 59.613 38.462 2.11 0.00 0.00 1.89
3558 4150 7.056635 CAGATCCCATACCTCAAGTTGTAATT 58.943 38.462 2.11 0.00 0.00 1.40
3559 4151 7.227512 CAGATCCCATACCTCAAGTTGTAATTC 59.772 40.741 2.11 0.00 0.00 2.17
3600 4297 2.778299 TGGAGACAAACCTTGGAATCG 58.222 47.619 0.00 0.00 37.44 3.34
3601 4298 2.370519 TGGAGACAAACCTTGGAATCGA 59.629 45.455 0.00 0.00 37.44 3.59
3604 4301 4.083271 GGAGACAAACCTTGGAATCGAAAG 60.083 45.833 0.00 0.00 34.12 2.62
3606 4303 2.890945 ACAAACCTTGGAATCGAAAGGG 59.109 45.455 16.12 3.56 46.12 3.95
3607 4304 2.890945 CAAACCTTGGAATCGAAAGGGT 59.109 45.455 16.12 8.28 45.64 4.34
3608 4305 2.971901 ACCTTGGAATCGAAAGGGTT 57.028 45.000 16.12 0.00 46.12 4.11
3609 4306 3.238788 ACCTTGGAATCGAAAGGGTTT 57.761 42.857 16.12 0.00 46.12 3.27
3610 4307 4.376225 ACCTTGGAATCGAAAGGGTTTA 57.624 40.909 16.12 0.00 46.12 2.01
3611 4308 4.332828 ACCTTGGAATCGAAAGGGTTTAG 58.667 43.478 16.12 0.00 46.12 1.85
3612 4309 3.694566 CCTTGGAATCGAAAGGGTTTAGG 59.305 47.826 5.81 0.00 39.49 2.69
3613 4310 2.718563 TGGAATCGAAAGGGTTTAGGC 58.281 47.619 0.00 0.00 0.00 3.93
3614 4311 2.307686 TGGAATCGAAAGGGTTTAGGCT 59.692 45.455 0.00 0.00 0.00 4.58
3615 4312 3.245122 TGGAATCGAAAGGGTTTAGGCTT 60.245 43.478 0.00 0.00 0.00 4.35
3616 4313 4.019141 TGGAATCGAAAGGGTTTAGGCTTA 60.019 41.667 0.00 0.00 0.00 3.09
3617 4314 4.575236 GGAATCGAAAGGGTTTAGGCTTAG 59.425 45.833 0.00 0.00 0.00 2.18
3618 4315 4.838904 ATCGAAAGGGTTTAGGCTTAGT 57.161 40.909 0.00 0.00 0.00 2.24
3619 4316 5.945144 ATCGAAAGGGTTTAGGCTTAGTA 57.055 39.130 0.00 0.00 0.00 1.82
3620 4317 5.334724 TCGAAAGGGTTTAGGCTTAGTAG 57.665 43.478 0.00 0.00 0.00 2.57
3621 4318 4.161001 TCGAAAGGGTTTAGGCTTAGTAGG 59.839 45.833 0.00 0.00 0.00 3.18
3622 4319 4.161001 CGAAAGGGTTTAGGCTTAGTAGGA 59.839 45.833 0.00 0.00 0.00 2.94
3624 4321 4.349564 AGGGTTTAGGCTTAGTAGGACT 57.650 45.455 0.00 0.00 0.00 3.85
3629 4326 6.820656 GGGTTTAGGCTTAGTAGGACTAAAAC 59.179 42.308 21.84 21.84 45.91 2.43
3630 4327 6.820656 GGTTTAGGCTTAGTAGGACTAAAACC 59.179 42.308 20.12 17.97 42.80 3.27
3631 4328 4.732672 AGGCTTAGTAGGACTAAAACCG 57.267 45.455 10.31 0.00 39.89 4.44
3632 4329 4.347607 AGGCTTAGTAGGACTAAAACCGA 58.652 43.478 10.31 0.00 39.89 4.69
3633 4330 4.401837 AGGCTTAGTAGGACTAAAACCGAG 59.598 45.833 10.31 0.00 39.89 4.63
3634 4331 4.159321 GGCTTAGTAGGACTAAAACCGAGT 59.841 45.833 1.08 0.00 39.89 4.18
3636 4333 6.261859 GCTTAGTAGGACTAAAACCGAGTAC 58.738 44.000 1.08 0.00 39.89 2.73
3637 4334 6.127897 GCTTAGTAGGACTAAAACCGAGTACA 60.128 42.308 0.00 0.00 39.89 2.90
3639 4336 6.205101 AGTAGGACTAAAACCGAGTACATG 57.795 41.667 0.00 0.00 29.25 3.21
3640 4337 5.948162 AGTAGGACTAAAACCGAGTACATGA 59.052 40.000 0.00 0.00 29.25 3.07
3641 4338 5.934402 AGGACTAAAACCGAGTACATGAT 57.066 39.130 0.00 0.00 29.25 2.45
3643 4340 5.187186 AGGACTAAAACCGAGTACATGATGT 59.813 40.000 2.65 2.65 29.25 3.06
3644 4341 5.291128 GGACTAAAACCGAGTACATGATGTG 59.709 44.000 8.61 0.00 0.00 3.21
3645 4342 4.630069 ACTAAAACCGAGTACATGATGTGC 59.370 41.667 8.61 6.98 32.95 4.57
3646 4343 1.640428 AACCGAGTACATGATGTGCG 58.360 50.000 8.61 9.05 38.05 5.34
3648 4345 0.179111 CCGAGTACATGATGTGCGGT 60.179 55.000 20.56 2.43 38.05 5.68
3649 4346 1.640428 CGAGTACATGATGTGCGGTT 58.360 50.000 8.61 0.00 38.05 4.44
3650 4347 1.999735 CGAGTACATGATGTGCGGTTT 59.000 47.619 8.61 0.00 38.05 3.27
3651 4348 2.029244 CGAGTACATGATGTGCGGTTTC 59.971 50.000 8.61 0.00 38.05 2.78
3652 4349 3.000041 GAGTACATGATGTGCGGTTTCA 59.000 45.455 8.61 0.00 38.05 2.69
3653 4350 3.002791 AGTACATGATGTGCGGTTTCAG 58.997 45.455 8.61 0.00 38.05 3.02
3654 4351 1.896220 ACATGATGTGCGGTTTCAGT 58.104 45.000 0.00 0.00 0.00 3.41
3656 4353 2.742053 ACATGATGTGCGGTTTCAGTAC 59.258 45.455 0.00 0.00 0.00 2.73
3658 4355 3.945981 TGATGTGCGGTTTCAGTACTA 57.054 42.857 0.00 0.00 0.00 1.82
3659 4356 3.581755 TGATGTGCGGTTTCAGTACTAC 58.418 45.455 0.00 0.00 0.00 2.73
3660 4357 3.257375 TGATGTGCGGTTTCAGTACTACT 59.743 43.478 0.00 0.00 0.00 2.57
3663 4360 3.192001 TGTGCGGTTTCAGTACTACTAGG 59.808 47.826 0.00 0.00 0.00 3.02
3664 4361 3.192212 GTGCGGTTTCAGTACTACTAGGT 59.808 47.826 0.00 0.00 0.00 3.08
3665 4362 3.192001 TGCGGTTTCAGTACTACTAGGTG 59.808 47.826 0.00 0.00 0.00 4.00
3666 4363 3.192212 GCGGTTTCAGTACTACTAGGTGT 59.808 47.826 0.00 0.00 0.00 4.16
3670 4367 5.105837 GGTTTCAGTACTACTAGGTGTGAGG 60.106 48.000 0.00 0.00 0.00 3.86
3673 4370 4.080469 TCAGTACTACTAGGTGTGAGGAGG 60.080 50.000 0.00 0.00 0.00 4.30
3676 4373 2.242708 ACTACTAGGTGTGAGGAGGAGG 59.757 54.545 0.00 0.00 0.00 4.30
3677 4374 1.383963 ACTAGGTGTGAGGAGGAGGA 58.616 55.000 0.00 0.00 0.00 3.71
3678 4375 1.286553 ACTAGGTGTGAGGAGGAGGAG 59.713 57.143 0.00 0.00 0.00 3.69
3680 4377 1.079438 GGTGTGAGGAGGAGGAGGT 59.921 63.158 0.00 0.00 0.00 3.85
3681 4378 0.545548 GGTGTGAGGAGGAGGAGGTT 60.546 60.000 0.00 0.00 0.00 3.50
3682 4379 1.273098 GGTGTGAGGAGGAGGAGGTTA 60.273 57.143 0.00 0.00 0.00 2.85
3683 4380 2.104170 GTGTGAGGAGGAGGAGGTTAG 58.896 57.143 0.00 0.00 0.00 2.34
3684 4381 1.116308 GTGAGGAGGAGGAGGTTAGC 58.884 60.000 0.00 0.00 0.00 3.09
3725 4422 4.796038 CTTAGAAGGACACCTTTCGGTA 57.204 45.455 4.51 0.00 44.82 4.02
3726 4423 5.340439 CTTAGAAGGACACCTTTCGGTAT 57.660 43.478 4.51 0.00 44.82 2.73
3727 4424 5.731591 CTTAGAAGGACACCTTTCGGTATT 58.268 41.667 4.51 0.00 44.82 1.89
3729 4426 4.324267 AGAAGGACACCTTTCGGTATTTG 58.676 43.478 4.51 0.00 44.82 2.32
3730 4427 3.067684 AGGACACCTTTCGGTATTTGG 57.932 47.619 0.00 0.00 43.24 3.28
3731 4428 2.089201 GGACACCTTTCGGTATTTGGG 58.911 52.381 0.00 0.00 43.24 4.12
3732 4429 2.089201 GACACCTTTCGGTATTTGGGG 58.911 52.381 0.00 0.00 43.24 4.96
3734 4431 2.089201 CACCTTTCGGTATTTGGGGTC 58.911 52.381 0.00 0.00 43.24 4.46
3735 4432 1.706305 ACCTTTCGGTATTTGGGGTCA 59.294 47.619 0.00 0.00 43.29 4.02
3736 4433 2.108601 ACCTTTCGGTATTTGGGGTCAA 59.891 45.455 0.00 0.00 43.29 3.18
3737 4434 3.245479 ACCTTTCGGTATTTGGGGTCAAT 60.245 43.478 0.00 0.00 43.29 2.57
3738 4435 3.130340 CCTTTCGGTATTTGGGGTCAATG 59.870 47.826 0.00 0.00 32.28 2.82
3739 4436 1.757682 TCGGTATTTGGGGTCAATGC 58.242 50.000 0.00 0.00 32.28 3.56
3741 4438 1.405105 CGGTATTTGGGGTCAATGCTG 59.595 52.381 0.00 0.00 32.28 4.41
3742 4439 1.136891 GGTATTTGGGGTCAATGCTGC 59.863 52.381 0.00 0.00 32.28 5.25
3743 4440 1.824230 GTATTTGGGGTCAATGCTGCA 59.176 47.619 4.13 4.13 32.28 4.41
3745 4442 1.186917 TTTGGGGTCAATGCTGCAGG 61.187 55.000 17.12 2.92 32.28 4.85
3746 4443 2.079088 TTGGGGTCAATGCTGCAGGA 62.079 55.000 17.12 14.45 0.00 3.86
3747 4444 1.751927 GGGGTCAATGCTGCAGGAG 60.752 63.158 17.12 1.40 0.00 3.69
3748 4445 1.751927 GGGTCAATGCTGCAGGAGG 60.752 63.158 17.12 9.63 0.00 4.30
3749 4446 1.300963 GGTCAATGCTGCAGGAGGA 59.699 57.895 17.12 12.01 0.00 3.71
3752 4449 0.106868 TCAATGCTGCAGGAGGATGG 60.107 55.000 17.12 0.00 31.99 3.51
3753 4450 1.107538 CAATGCTGCAGGAGGATGGG 61.108 60.000 17.12 0.00 31.99 4.00
3754 4451 2.294170 AATGCTGCAGGAGGATGGGG 62.294 60.000 17.12 0.00 31.99 4.96
3755 4452 4.201122 GCTGCAGGAGGATGGGGG 62.201 72.222 17.12 0.00 0.00 5.40
3758 4455 0.769776 CTGCAGGAGGATGGGGGTAT 60.770 60.000 5.57 0.00 0.00 2.73
3760 4457 0.111253 GCAGGAGGATGGGGGTATTG 59.889 60.000 0.00 0.00 0.00 1.90
3762 4459 2.352371 CAGGAGGATGGGGGTATTGAT 58.648 52.381 0.00 0.00 0.00 2.57
3763 4460 2.040813 CAGGAGGATGGGGGTATTGATG 59.959 54.545 0.00 0.00 0.00 3.07
3764 4461 2.089408 AGGAGGATGGGGGTATTGATGA 60.089 50.000 0.00 0.00 0.00 2.92
3766 4463 3.245052 GGAGGATGGGGGTATTGATGAAG 60.245 52.174 0.00 0.00 0.00 3.02
3767 4464 3.652869 GAGGATGGGGGTATTGATGAAGA 59.347 47.826 0.00 0.00 0.00 2.87
3769 4466 4.043812 AGGATGGGGGTATTGATGAAGATG 59.956 45.833 0.00 0.00 0.00 2.90
3770 4467 4.202609 GGATGGGGGTATTGATGAAGATGT 60.203 45.833 0.00 0.00 0.00 3.06
3771 4468 4.169059 TGGGGGTATTGATGAAGATGTG 57.831 45.455 0.00 0.00 0.00 3.21
3774 4471 4.580580 GGGGGTATTGATGAAGATGTGAAC 59.419 45.833 0.00 0.00 0.00 3.18
3775 4472 4.580580 GGGGTATTGATGAAGATGTGAACC 59.419 45.833 0.00 0.00 0.00 3.62
3776 4473 5.192927 GGGTATTGATGAAGATGTGAACCA 58.807 41.667 0.00 0.00 0.00 3.67
3790 4487 1.737236 TGAACCATCGAATCAAAGCCG 59.263 47.619 0.00 0.00 0.00 5.52
3791 4488 1.064060 GAACCATCGAATCAAAGCCGG 59.936 52.381 0.00 0.00 0.00 6.13
3792 4489 0.251916 ACCATCGAATCAAAGCCGGA 59.748 50.000 5.05 0.00 0.00 5.14
3793 4490 1.134098 ACCATCGAATCAAAGCCGGAT 60.134 47.619 5.05 0.00 0.00 4.18
3794 4491 1.265095 CCATCGAATCAAAGCCGGATG 59.735 52.381 5.05 0.00 0.00 3.51
3795 4492 1.265095 CATCGAATCAAAGCCGGATGG 59.735 52.381 5.05 0.00 38.77 3.51
3796 4493 0.539518 TCGAATCAAAGCCGGATGGA 59.460 50.000 5.05 0.00 37.49 3.41
3797 4494 1.140852 TCGAATCAAAGCCGGATGGAT 59.859 47.619 5.05 2.85 37.49 3.41
3798 4495 1.265095 CGAATCAAAGCCGGATGGATG 59.735 52.381 5.05 0.00 37.49 3.51
3799 4496 2.575532 GAATCAAAGCCGGATGGATGA 58.424 47.619 5.05 5.46 37.49 2.92
3801 4498 2.042686 TCAAAGCCGGATGGATGAAG 57.957 50.000 5.05 0.00 37.49 3.02
3803 4500 1.402968 CAAAGCCGGATGGATGAAGTG 59.597 52.381 5.05 0.00 37.49 3.16
3804 4501 0.107017 AAGCCGGATGGATGAAGTGG 60.107 55.000 5.05 0.00 37.49 4.00
3806 4503 1.097547 GCCGGATGGATGAAGTGGTG 61.098 60.000 5.05 0.00 37.49 4.17
3807 4504 0.253044 CCGGATGGATGAAGTGGTGT 59.747 55.000 0.00 0.00 37.49 4.16
3808 4505 1.656652 CGGATGGATGAAGTGGTGTC 58.343 55.000 0.00 0.00 0.00 3.67
3810 4507 2.420547 CGGATGGATGAAGTGGTGTCAT 60.421 50.000 0.00 0.00 38.44 3.06
3881 6304 5.920840 CAGCATGGAGAATCATTAGCAATTG 59.079 40.000 0.00 0.00 36.25 2.32
3919 6346 9.290988 TCTTTTTAACTACATTCTGCCACATAA 57.709 29.630 0.00 0.00 0.00 1.90
3942 6369 7.929941 AACTTCTTTATTCTCCAGATTCCAC 57.070 36.000 0.00 0.00 0.00 4.02
3979 6406 8.316946 ACATGAGACTGACATTGAATTTCTCTA 58.683 33.333 0.00 0.00 31.25 2.43
4034 6461 4.599041 TGCCTACAAATAACATGCCTTCT 58.401 39.130 0.00 0.00 0.00 2.85
4045 6472 0.326264 ATGCCTTCTCACCCAGTGAC 59.674 55.000 0.00 0.00 37.67 3.67
4046 6473 1.053835 TGCCTTCTCACCCAGTGACA 61.054 55.000 0.00 0.00 37.67 3.58
4047 6474 0.326264 GCCTTCTCACCCAGTGACAT 59.674 55.000 0.00 0.00 37.67 3.06
4048 6475 1.271597 GCCTTCTCACCCAGTGACATT 60.272 52.381 0.00 0.00 37.67 2.71
4049 6476 2.815589 GCCTTCTCACCCAGTGACATTT 60.816 50.000 0.00 0.00 37.67 2.32
4050 6477 2.816087 CCTTCTCACCCAGTGACATTTG 59.184 50.000 0.00 0.00 37.67 2.32
4051 6478 1.896220 TCTCACCCAGTGACATTTGC 58.104 50.000 0.00 0.00 37.67 3.68
4052 6479 1.421268 TCTCACCCAGTGACATTTGCT 59.579 47.619 0.00 0.00 37.67 3.91
4098 6525 7.776618 AAAAACCCTTCTATTAGAAAGGGTG 57.223 36.000 28.57 15.94 46.07 4.61
4099 6526 5.452341 AACCCTTCTATTAGAAAGGGTGG 57.548 43.478 28.57 17.80 46.07 4.61
4100 6527 4.706616 ACCCTTCTATTAGAAAGGGTGGA 58.293 43.478 27.94 2.88 45.57 4.02
4102 6529 4.473559 CCCTTCTATTAGAAAGGGTGGACA 59.526 45.833 21.31 0.00 37.63 4.02
4103 6530 5.045140 CCCTTCTATTAGAAAGGGTGGACAA 60.045 44.000 21.31 0.00 37.63 3.18
4104 6531 6.481643 CCTTCTATTAGAAAGGGTGGACAAA 58.518 40.000 7.51 0.00 33.19 2.83
4105 6532 7.119387 CCTTCTATTAGAAAGGGTGGACAAAT 58.881 38.462 7.51 0.00 33.19 2.32
4106 6533 8.272173 CCTTCTATTAGAAAGGGTGGACAAATA 58.728 37.037 7.51 0.00 33.19 1.40
4108 6535 9.457436 TTCTATTAGAAAGGGTGGACAAATAAC 57.543 33.333 3.60 0.00 29.99 1.89
4111 6538 5.982890 AGAAAGGGTGGACAAATAACATG 57.017 39.130 0.00 0.00 0.00 3.21
4112 6539 4.220602 AGAAAGGGTGGACAAATAACATGC 59.779 41.667 0.00 0.00 0.00 4.06
4113 6540 2.456577 AGGGTGGACAAATAACATGCC 58.543 47.619 0.00 0.00 0.00 4.40
4115 6542 2.831526 GGGTGGACAAATAACATGCCTT 59.168 45.455 0.00 0.00 0.00 4.35
4135 6574 8.133024 TGCCTTTACATGAAGAAATGGTAAAT 57.867 30.769 0.00 0.00 31.46 1.40
4137 6576 8.872845 GCCTTTACATGAAGAAATGGTAAATTG 58.127 33.333 0.00 0.00 31.46 2.32
4138 6577 9.369904 CCTTTACATGAAGAAATGGTAAATTGG 57.630 33.333 0.00 0.00 31.46 3.16
4182 6621 2.738587 TTTAGTCACCTTGCCACCAA 57.261 45.000 0.00 0.00 0.00 3.67
4199 6638 0.111253 CAAGGGACAGGTTTCCAGCT 59.889 55.000 0.00 0.00 37.40 4.24
4200 6639 0.402121 AAGGGACAGGTTTCCAGCTC 59.598 55.000 0.00 0.00 37.40 4.09
4201 6640 0.474660 AGGGACAGGTTTCCAGCTCT 60.475 55.000 0.00 0.00 37.40 4.09
4202 6641 0.035915 GGGACAGGTTTCCAGCTCTC 60.036 60.000 0.00 0.00 37.40 3.20
4203 6642 0.035915 GGACAGGTTTCCAGCTCTCC 60.036 60.000 0.00 0.00 35.49 3.71
4204 6643 0.687354 GACAGGTTTCCAGCTCTCCA 59.313 55.000 0.00 0.00 0.00 3.86
4205 6644 0.398318 ACAGGTTTCCAGCTCTCCAC 59.602 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.809279 GGCAAAGCAAAGCAAACTATTGT 59.191 39.130 0.00 0.00 38.85 2.71
1 2 3.808726 TGGCAAAGCAAAGCAAACTATTG 59.191 39.130 0.00 0.00 39.65 1.90
6 7 1.267483 CGTTGGCAAAGCAAAGCAAAC 60.267 47.619 0.00 4.90 40.46 2.93
98 99 8.091449 AGCGATTTAATCCTAGATCGAGAAATT 58.909 33.333 12.04 6.54 42.08 1.82
195 227 2.549349 GGTGTACCTGTTCCGTGATTGT 60.549 50.000 0.00 0.00 0.00 2.71
210 242 2.126189 GTGACGGCGAGGGTGTAC 60.126 66.667 16.62 0.00 0.00 2.90
238 270 7.231519 ACAAAGAAAGAAGGGTAGAAGGAAATG 59.768 37.037 0.00 0.00 0.00 2.32
247 279 5.870706 AGAGGAACAAAGAAAGAAGGGTAG 58.129 41.667 0.00 0.00 0.00 3.18
249 281 4.797912 AGAGGAACAAAGAAAGAAGGGT 57.202 40.909 0.00 0.00 0.00 4.34
290 325 5.503634 AATGGAAGGAATTGGGAAAAAGG 57.496 39.130 0.00 0.00 0.00 3.11
291 326 7.226441 AGAAAATGGAAGGAATTGGGAAAAAG 58.774 34.615 0.00 0.00 0.00 2.27
301 336 2.291540 TGCGGGAGAAAATGGAAGGAAT 60.292 45.455 0.00 0.00 0.00 3.01
521 560 7.686519 TCTTGCATTCAAACAAAATTCTTGTG 58.313 30.769 6.73 0.00 32.22 3.33
530 569 5.273674 TGGTCATCTTGCATTCAAACAAA 57.726 34.783 0.00 0.00 0.00 2.83
531 570 4.933505 TGGTCATCTTGCATTCAAACAA 57.066 36.364 0.00 0.00 0.00 2.83
533 572 6.790285 AAAATGGTCATCTTGCATTCAAAC 57.210 33.333 0.00 0.00 0.00 2.93
573 612 9.787532 AAATGTTCCTTTACATCAACATAATCG 57.212 29.630 0.00 0.00 38.28 3.34
702 741 2.414161 GCACAGCCCATTAACTCGTTTC 60.414 50.000 0.00 0.00 0.00 2.78
703 742 1.539827 GCACAGCCCATTAACTCGTTT 59.460 47.619 0.00 0.00 0.00 3.60
722 761 7.182749 TCCCTATATATATAGAATGGCCATGGC 59.817 40.741 29.47 29.47 38.30 4.40
733 772 6.775234 TGGACGGCTCCCTATATATATAGA 57.225 41.667 25.30 10.32 35.24 1.98
734 773 7.175797 TCATGGACGGCTCCCTATATATATAG 58.824 42.308 19.15 19.15 35.34 1.31
740 779 2.623418 TCATGGACGGCTCCCTATAT 57.377 50.000 0.00 0.00 35.34 0.86
741 780 2.391926 TTCATGGACGGCTCCCTATA 57.608 50.000 0.00 0.00 35.34 1.31
744 783 0.625849 AATTTCATGGACGGCTCCCT 59.374 50.000 0.00 0.00 35.34 4.20
751 790 4.566360 GCAAATGGGTTAATTTCATGGACG 59.434 41.667 0.00 0.00 0.00 4.79
755 794 8.489990 TGTATTGCAAATGGGTTAATTTCATG 57.510 30.769 1.71 0.00 0.00 3.07
759 798 8.286097 CGTTTTGTATTGCAAATGGGTTAATTT 58.714 29.630 1.71 0.00 45.38 1.82
762 801 5.696724 CCGTTTTGTATTGCAAATGGGTTAA 59.303 36.000 1.71 0.00 45.38 2.01
863 951 5.081728 AGAATATATAGTGGTGGCCGTGTA 58.918 41.667 0.00 0.00 0.00 2.90
904 992 2.595655 GGCGGCTAGGGTTTGGAT 59.404 61.111 0.00 0.00 0.00 3.41
928 1016 2.754658 GGACGAAGAGGCGGAGGA 60.755 66.667 0.00 0.00 35.12 3.71
982 1073 1.075601 ATGGTTGAAGGGAAGGCTGA 58.924 50.000 0.00 0.00 0.00 4.26
1013 1104 0.688749 TAGGGGCTAGGGTTTCGGAC 60.689 60.000 0.00 0.00 0.00 4.79
1036 1127 4.581093 GAAGGGGCGGGGTATGGC 62.581 72.222 0.00 0.00 0.00 4.40
1250 1345 4.426112 CGCAGCGCAGAGGAGACA 62.426 66.667 11.47 0.00 0.00 3.41
1251 1346 2.897641 ATTCGCAGCGCAGAGGAGAC 62.898 60.000 10.87 0.00 0.00 3.36
1258 1353 0.506080 GATACAGATTCGCAGCGCAG 59.494 55.000 10.87 1.31 0.00 5.18
1274 1369 2.187685 CGCAGCCAGCCACAGATA 59.812 61.111 0.00 0.00 41.38 1.98
1294 1389 1.141881 CCGGATCAGACCAAGGACG 59.858 63.158 0.00 0.00 0.00 4.79
1298 1393 0.036010 ACAAGCCGGATCAGACCAAG 60.036 55.000 5.05 0.00 0.00 3.61
1340 1435 1.076677 AGACCCCTCGAGAACCTAACA 59.923 52.381 15.71 0.00 0.00 2.41
1455 1550 8.425577 TCTATACAAAGATAAGCAAGCAGTTC 57.574 34.615 0.00 0.00 0.00 3.01
1490 1586 5.048434 GTCAAAAATTAAGAGCAGAGCAGGT 60.048 40.000 0.00 0.00 0.00 4.00
1531 1628 5.557891 AATAGCTCAACTCAAGCACAATC 57.442 39.130 0.00 0.00 42.35 2.67
1641 1757 6.792977 ACTAAATAGTATAGGCCACTTGGGAT 59.207 38.462 5.01 0.00 34.66 3.85
1648 1764 9.783256 CAAACAAAACTAAATAGTATAGGCCAC 57.217 33.333 5.01 0.00 34.99 5.01
1700 1816 6.611381 TCATTCAGACGCTTTGGATTAAAAG 58.389 36.000 0.00 0.00 39.66 2.27
1708 1826 4.944962 TTACATCATTCAGACGCTTTGG 57.055 40.909 0.00 0.00 0.00 3.28
1763 1882 5.690865 ACAAAACAAGACTAGGACAATGGA 58.309 37.500 0.00 0.00 0.00 3.41
1765 1884 6.795399 ACAACAAAACAAGACTAGGACAATG 58.205 36.000 0.00 0.00 0.00 2.82
1831 1950 5.043248 CCAGTGGAAAATCACAGAAACAAC 58.957 41.667 1.68 0.00 39.93 3.32
1877 2009 6.368243 CAGAATAGTAGCAGCATACCATGAAG 59.632 42.308 0.00 0.00 0.00 3.02
1878 2010 6.183361 ACAGAATAGTAGCAGCATACCATGAA 60.183 38.462 0.00 0.00 0.00 2.57
1934 2066 8.907222 TGCAGAGCAATATTATTGACAGATTA 57.093 30.769 18.46 0.00 34.76 1.75
1951 2083 4.635699 ATGGATCATATTCTGCAGAGCA 57.364 40.909 17.43 9.14 36.92 4.26
1961 2098 2.895404 GCAGGCCACAATGGATCATATT 59.105 45.455 5.01 0.00 40.96 1.28
1974 2111 6.204882 CCTATAGTACAAAATTAGCAGGCCAC 59.795 42.308 5.01 0.00 0.00 5.01
2067 2204 8.394121 GGATTAAAATAGTAGCAGCATAGCATC 58.606 37.037 0.00 0.00 36.85 3.91
2095 2232 3.393800 ACACACATCAGAACAGCTACAC 58.606 45.455 0.00 0.00 0.00 2.90
2125 2651 7.928706 AGAACAGGTGATAAGCATATTACAGAC 59.071 37.037 6.26 0.62 31.41 3.51
2126 2652 8.023021 AGAACAGGTGATAAGCATATTACAGA 57.977 34.615 6.26 0.00 31.41 3.41
2134 2660 4.338879 AGCAAAGAACAGGTGATAAGCAT 58.661 39.130 0.00 0.00 0.00 3.79
2139 2665 5.559770 TGAATGAGCAAAGAACAGGTGATA 58.440 37.500 0.00 0.00 0.00 2.15
2142 2668 4.037208 ACTTGAATGAGCAAAGAACAGGTG 59.963 41.667 0.00 0.00 0.00 4.00
2143 2669 4.037208 CACTTGAATGAGCAAAGAACAGGT 59.963 41.667 0.00 0.00 0.00 4.00
2150 2676 8.752766 AATAATTGACACTTGAATGAGCAAAG 57.247 30.769 0.00 0.00 0.00 2.77
2244 2771 9.934190 ACAAGTTATGAAACAAAATTTCATTGC 57.066 25.926 17.39 11.70 44.16 3.56
2275 2803 9.640952 AATATTATACTACCAAAATGTGTGCCT 57.359 29.630 0.00 0.00 0.00 4.75
2326 2855 9.088987 AGAGTAACAAAATACAATGAAATGGGT 57.911 29.630 0.00 0.00 0.00 4.51
2363 2894 7.902387 AGTCATATCATACACATCAATGAGC 57.098 36.000 0.00 0.00 35.67 4.26
2408 2941 6.047511 ACATGAAACTTAGAGCACAGATCT 57.952 37.500 0.00 0.00 31.51 2.75
2462 2995 8.709272 TCATCTTCATCTCAATCTCTACAGAT 57.291 34.615 0.00 0.00 41.59 2.90
2558 3091 4.464069 AAGCTGGAGTACTCAATCAGTC 57.536 45.455 23.91 15.88 36.43 3.51
2589 3122 7.218145 ACGCTTATAGAAAACAACATAGACG 57.782 36.000 0.00 0.00 0.00 4.18
2647 3182 2.603173 GCAGAACAAAAGCTGACTTCGG 60.603 50.000 0.00 0.00 34.05 4.30
2648 3183 2.289002 AGCAGAACAAAAGCTGACTTCG 59.711 45.455 0.00 0.00 37.20 3.79
2786 3323 4.391830 CCAGTAGTACACAATCACGCAAAT 59.608 41.667 2.52 0.00 0.00 2.32
2798 3335 4.222145 TCAAGTGATTCCCCAGTAGTACAC 59.778 45.833 2.52 0.00 0.00 2.90
2918 3457 8.031864 CAGACAATGAGTGAGTTACTGAGTTAT 58.968 37.037 0.00 0.00 40.53 1.89
2921 3461 5.303078 ACAGACAATGAGTGAGTTACTGAGT 59.697 40.000 0.00 0.00 40.53 3.41
2927 3467 4.588951 ACAGGACAGACAATGAGTGAGTTA 59.411 41.667 0.00 0.00 0.00 2.24
3046 3586 0.330941 TGCCATTGTAGATGCCCACA 59.669 50.000 0.00 0.00 0.00 4.17
3160 3700 3.776781 TGGGTGGCACCGATACCG 61.777 66.667 29.18 0.00 39.83 4.02
3207 3747 7.037438 CCAAAGACAATTTTCCTGACCATATG 58.963 38.462 0.00 0.00 0.00 1.78
3259 3799 2.401583 ATCAGGCGCTACATTTGACA 57.598 45.000 7.64 0.00 0.00 3.58
3348 3889 8.098286 TCCTTACGATAACTTCAAAATCTGGAA 58.902 33.333 0.00 0.00 0.00 3.53
3349 3890 7.617225 TCCTTACGATAACTTCAAAATCTGGA 58.383 34.615 0.00 0.00 0.00 3.86
3350 3891 7.843490 TCCTTACGATAACTTCAAAATCTGG 57.157 36.000 0.00 0.00 0.00 3.86
3351 3892 8.391106 CCTTCCTTACGATAACTTCAAAATCTG 58.609 37.037 0.00 0.00 0.00 2.90
3352 3893 8.101419 ACCTTCCTTACGATAACTTCAAAATCT 58.899 33.333 0.00 0.00 0.00 2.40
3353 3894 8.265165 ACCTTCCTTACGATAACTTCAAAATC 57.735 34.615 0.00 0.00 0.00 2.17
3354 3895 7.064253 CGACCTTCCTTACGATAACTTCAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
3355 3896 6.366877 CGACCTTCCTTACGATAACTTCAAAA 59.633 38.462 0.00 0.00 0.00 2.44
3356 3897 5.865552 CGACCTTCCTTACGATAACTTCAAA 59.134 40.000 0.00 0.00 0.00 2.69
3357 3898 5.183713 TCGACCTTCCTTACGATAACTTCAA 59.816 40.000 0.00 0.00 0.00 2.69
3358 3899 4.701651 TCGACCTTCCTTACGATAACTTCA 59.298 41.667 0.00 0.00 0.00 3.02
3359 3900 5.240713 TCGACCTTCCTTACGATAACTTC 57.759 43.478 0.00 0.00 0.00 3.01
3377 3918 5.673818 GCCAAAGGAGATAAACATGTTCGAC 60.674 44.000 12.39 6.18 0.00 4.20
3406 3992 5.284079 AGCACACAAATCAGAACATTTGAC 58.716 37.500 11.85 0.91 43.70 3.18
3410 3996 5.533903 AGAAGAGCACACAAATCAGAACATT 59.466 36.000 0.00 0.00 0.00 2.71
3414 4000 7.750229 ATTTAGAAGAGCACACAAATCAGAA 57.250 32.000 0.00 0.00 0.00 3.02
3456 4042 7.487189 CGATAAAACAATACTCCACTTAGACGT 59.513 37.037 0.00 0.00 0.00 4.34
3466 4052 6.248631 GTTCACAGCGATAAAACAATACTCC 58.751 40.000 0.00 0.00 0.00 3.85
3480 4066 2.108157 AAGCACCGTTCACAGCGA 59.892 55.556 0.00 0.00 0.00 4.93
3481 4067 2.249309 CAAGCACCGTTCACAGCG 59.751 61.111 0.00 0.00 0.00 5.18
3507 4099 1.940613 GTTAGCCGATGGTCACCATTC 59.059 52.381 11.74 3.67 45.26 2.67
3514 4106 1.476891 TGACAGAGTTAGCCGATGGTC 59.523 52.381 0.00 0.00 0.00 4.02
3516 4108 1.751351 TCTGACAGAGTTAGCCGATGG 59.249 52.381 0.00 0.00 0.00 3.51
3517 4109 3.551863 GGATCTGACAGAGTTAGCCGATG 60.552 52.174 11.52 0.00 0.00 3.84
3518 4110 2.625790 GGATCTGACAGAGTTAGCCGAT 59.374 50.000 11.52 0.00 0.00 4.18
3520 4112 1.067821 GGGATCTGACAGAGTTAGCCG 59.932 57.143 11.52 0.00 0.00 5.52
3521 4113 2.111384 TGGGATCTGACAGAGTTAGCC 58.889 52.381 11.52 6.88 0.00 3.93
3522 4114 4.262249 GGTATGGGATCTGACAGAGTTAGC 60.262 50.000 11.52 4.35 0.00 3.09
3523 4115 5.144100 AGGTATGGGATCTGACAGAGTTAG 58.856 45.833 11.52 0.00 0.00 2.34
3524 4116 5.141182 GAGGTATGGGATCTGACAGAGTTA 58.859 45.833 11.52 0.00 0.00 2.24
3526 4118 3.052566 TGAGGTATGGGATCTGACAGAGT 60.053 47.826 11.52 0.00 0.00 3.24
3527 4119 3.570540 TGAGGTATGGGATCTGACAGAG 58.429 50.000 11.52 0.00 0.00 3.35
3529 4121 3.708631 ACTTGAGGTATGGGATCTGACAG 59.291 47.826 0.00 0.00 0.00 3.51
3531 4123 4.080863 ACAACTTGAGGTATGGGATCTGAC 60.081 45.833 0.00 0.00 0.00 3.51
3533 4125 4.494091 ACAACTTGAGGTATGGGATCTG 57.506 45.455 0.00 0.00 0.00 2.90
3534 4126 6.831664 ATTACAACTTGAGGTATGGGATCT 57.168 37.500 0.00 0.00 0.00 2.75
3535 4127 7.283329 AGAATTACAACTTGAGGTATGGGATC 58.717 38.462 0.00 0.00 0.00 3.36
3536 4128 7.213178 AGAATTACAACTTGAGGTATGGGAT 57.787 36.000 0.00 0.00 0.00 3.85
3537 4129 6.636454 AGAATTACAACTTGAGGTATGGGA 57.364 37.500 0.00 0.00 0.00 4.37
3538 4130 7.393234 TCAAAGAATTACAACTTGAGGTATGGG 59.607 37.037 0.00 0.00 0.00 4.00
3539 4131 8.335532 TCAAAGAATTACAACTTGAGGTATGG 57.664 34.615 0.00 0.00 0.00 2.74
3573 4270 6.636454 TCCAAGGTTTGTCTCCATAACTAT 57.364 37.500 0.00 0.00 0.00 2.12
3574 4271 6.442541 TTCCAAGGTTTGTCTCCATAACTA 57.557 37.500 0.00 0.00 0.00 2.24
3578 4275 4.224147 TCGATTCCAAGGTTTGTCTCCATA 59.776 41.667 0.00 0.00 0.00 2.74
3580 4277 2.370519 TCGATTCCAAGGTTTGTCTCCA 59.629 45.455 0.00 0.00 0.00 3.86
3582 4279 4.083271 CCTTTCGATTCCAAGGTTTGTCTC 60.083 45.833 5.58 0.00 35.67 3.36
3584 4281 3.057526 CCCTTTCGATTCCAAGGTTTGTC 60.058 47.826 11.68 0.00 38.37 3.18
3586 4283 2.890945 ACCCTTTCGATTCCAAGGTTTG 59.109 45.455 11.68 1.16 38.37 2.93
3590 4287 3.694566 CCTAAACCCTTTCGATTCCAAGG 59.305 47.826 6.63 6.63 39.58 3.61
3595 4292 5.183969 ACTAAGCCTAAACCCTTTCGATTC 58.816 41.667 0.00 0.00 0.00 2.52
3600 4297 5.189342 AGTCCTACTAAGCCTAAACCCTTTC 59.811 44.000 0.00 0.00 0.00 2.62
3601 4298 5.099378 AGTCCTACTAAGCCTAAACCCTTT 58.901 41.667 0.00 0.00 0.00 3.11
3604 4301 6.550938 TTTAGTCCTACTAAGCCTAAACCC 57.449 41.667 0.31 0.00 41.23 4.11
3605 4302 6.820656 GGTTTTAGTCCTACTAAGCCTAAACC 59.179 42.308 11.62 11.62 41.23 3.27
3606 4303 6.533012 CGGTTTTAGTCCTACTAAGCCTAAAC 59.467 42.308 14.72 9.81 41.23 2.01
3607 4304 6.437162 TCGGTTTTAGTCCTACTAAGCCTAAA 59.563 38.462 14.72 0.00 41.23 1.85
3608 4305 5.951747 TCGGTTTTAGTCCTACTAAGCCTAA 59.048 40.000 14.72 0.00 41.23 2.69
3609 4306 5.509498 TCGGTTTTAGTCCTACTAAGCCTA 58.491 41.667 14.72 6.72 41.23 3.93
3610 4307 4.347607 TCGGTTTTAGTCCTACTAAGCCT 58.652 43.478 14.72 0.00 41.23 4.58
3611 4308 4.159321 ACTCGGTTTTAGTCCTACTAAGCC 59.841 45.833 10.16 10.16 41.23 4.35
3612 4309 5.321959 ACTCGGTTTTAGTCCTACTAAGC 57.678 43.478 0.31 0.00 41.23 3.09
3613 4310 7.383102 TGTACTCGGTTTTAGTCCTACTAAG 57.617 40.000 0.00 0.00 41.23 2.18
3614 4311 7.611467 TCATGTACTCGGTTTTAGTCCTACTAA 59.389 37.037 0.00 0.00 38.79 2.24
3615 4312 7.112122 TCATGTACTCGGTTTTAGTCCTACTA 58.888 38.462 0.00 0.00 0.00 1.82
3616 4313 5.948162 TCATGTACTCGGTTTTAGTCCTACT 59.052 40.000 0.00 0.00 0.00 2.57
3617 4314 6.199937 TCATGTACTCGGTTTTAGTCCTAC 57.800 41.667 0.00 0.00 0.00 3.18
3618 4315 6.379133 ACATCATGTACTCGGTTTTAGTCCTA 59.621 38.462 0.00 0.00 0.00 2.94
3619 4316 5.187186 ACATCATGTACTCGGTTTTAGTCCT 59.813 40.000 0.00 0.00 0.00 3.85
3620 4317 5.291128 CACATCATGTACTCGGTTTTAGTCC 59.709 44.000 0.00 0.00 0.00 3.85
3621 4318 5.220416 GCACATCATGTACTCGGTTTTAGTC 60.220 44.000 0.00 0.00 0.00 2.59
3622 4319 4.630069 GCACATCATGTACTCGGTTTTAGT 59.370 41.667 0.00 0.00 0.00 2.24
3624 4321 3.615056 CGCACATCATGTACTCGGTTTTA 59.385 43.478 0.00 0.00 0.00 1.52
3629 4326 0.179111 ACCGCACATCATGTACTCGG 60.179 55.000 18.41 18.41 40.36 4.63
3630 4327 1.640428 AACCGCACATCATGTACTCG 58.360 50.000 0.00 0.00 0.00 4.18
3631 4328 3.000041 TGAAACCGCACATCATGTACTC 59.000 45.455 0.00 0.00 0.00 2.59
3632 4329 3.002791 CTGAAACCGCACATCATGTACT 58.997 45.455 0.00 0.00 0.00 2.73
3633 4330 2.742053 ACTGAAACCGCACATCATGTAC 59.258 45.455 0.00 0.00 0.00 2.90
3634 4331 3.052455 ACTGAAACCGCACATCATGTA 57.948 42.857 0.00 0.00 0.00 2.29
3636 4333 3.002791 AGTACTGAAACCGCACATCATG 58.997 45.455 0.00 0.00 0.00 3.07
3637 4334 3.334583 AGTACTGAAACCGCACATCAT 57.665 42.857 0.00 0.00 0.00 2.45
3639 4336 3.846360 AGTAGTACTGAAACCGCACATC 58.154 45.455 5.39 0.00 0.00 3.06
3640 4337 3.955650 AGTAGTACTGAAACCGCACAT 57.044 42.857 5.39 0.00 0.00 3.21
3641 4338 3.192001 CCTAGTAGTACTGAAACCGCACA 59.808 47.826 13.29 0.00 0.00 4.57
3643 4340 3.192001 CACCTAGTAGTACTGAAACCGCA 59.808 47.826 13.29 0.00 0.00 5.69
3644 4341 3.192212 ACACCTAGTAGTACTGAAACCGC 59.808 47.826 13.29 0.00 0.00 5.68
3645 4342 4.456911 TCACACCTAGTAGTACTGAAACCG 59.543 45.833 13.29 0.00 0.00 4.44
3646 4343 5.105837 CCTCACACCTAGTAGTACTGAAACC 60.106 48.000 13.29 0.00 0.00 3.27
3648 4345 5.884322 TCCTCACACCTAGTAGTACTGAAA 58.116 41.667 13.29 0.00 0.00 2.69
3649 4346 5.498393 CTCCTCACACCTAGTAGTACTGAA 58.502 45.833 13.29 0.00 0.00 3.02
3650 4347 4.080469 CCTCCTCACACCTAGTAGTACTGA 60.080 50.000 13.29 0.57 0.00 3.41
3651 4348 4.080469 TCCTCCTCACACCTAGTAGTACTG 60.080 50.000 13.29 0.00 0.00 2.74
3652 4349 4.110072 TCCTCCTCACACCTAGTAGTACT 58.890 47.826 8.14 8.14 0.00 2.73
3653 4350 4.453751 CTCCTCCTCACACCTAGTAGTAC 58.546 52.174 0.00 0.00 0.00 2.73
3654 4351 3.458857 CCTCCTCCTCACACCTAGTAGTA 59.541 52.174 0.00 0.00 0.00 1.82
3656 4353 2.510382 TCCTCCTCCTCACACCTAGTAG 59.490 54.545 0.00 0.00 0.00 2.57
3658 4355 1.286553 CTCCTCCTCCTCACACCTAGT 59.713 57.143 0.00 0.00 0.00 2.57
3659 4356 1.410932 CCTCCTCCTCCTCACACCTAG 60.411 61.905 0.00 0.00 0.00 3.02
3660 4357 0.631753 CCTCCTCCTCCTCACACCTA 59.368 60.000 0.00 0.00 0.00 3.08
3663 4360 2.104170 CTAACCTCCTCCTCCTCACAC 58.896 57.143 0.00 0.00 0.00 3.82
3664 4361 1.619977 GCTAACCTCCTCCTCCTCACA 60.620 57.143 0.00 0.00 0.00 3.58
3665 4362 1.116308 GCTAACCTCCTCCTCCTCAC 58.884 60.000 0.00 0.00 0.00 3.51
3666 4363 0.032017 GGCTAACCTCCTCCTCCTCA 60.032 60.000 0.00 0.00 0.00 3.86
3684 4381 0.394352 GTACCACCTGGCCATCAAGG 60.394 60.000 5.51 6.54 39.32 3.61
3686 4383 1.688811 GGTACCACCTGGCCATCAA 59.311 57.895 5.51 0.00 39.32 2.57
3687 4384 3.410541 GGTACCACCTGGCCATCA 58.589 61.111 5.51 0.00 39.32 3.07
3696 4393 2.235650 GGTGTCCTTCTAAGGTACCACC 59.764 54.545 15.94 21.57 45.38 4.61
3697 4394 3.171528 AGGTGTCCTTCTAAGGTACCAC 58.828 50.000 25.58 20.36 46.88 4.16
3699 4396 4.620097 CGAAAGGTGTCCTTCTAAGGTACC 60.620 50.000 20.61 20.61 43.92 3.34
3700 4397 4.492611 CGAAAGGTGTCCTTCTAAGGTAC 58.507 47.826 8.57 8.90 43.92 3.34
3716 4413 3.130340 CATTGACCCCAAATACCGAAAGG 59.870 47.826 0.00 0.00 46.63 3.11
3717 4414 3.428862 GCATTGACCCCAAATACCGAAAG 60.429 47.826 0.00 0.00 35.67 2.62
3719 4416 2.096248 GCATTGACCCCAAATACCGAA 58.904 47.619 0.00 0.00 35.67 4.30
3720 4417 1.283613 AGCATTGACCCCAAATACCGA 59.716 47.619 0.00 0.00 35.67 4.69
3722 4419 1.136891 GCAGCATTGACCCCAAATACC 59.863 52.381 0.00 0.00 35.67 2.73
3723 4420 1.824230 TGCAGCATTGACCCCAAATAC 59.176 47.619 0.00 0.00 35.67 1.89
3725 4422 0.899720 CTGCAGCATTGACCCCAAAT 59.100 50.000 0.00 0.00 35.67 2.32
3726 4423 1.186917 CCTGCAGCATTGACCCCAAA 61.187 55.000 8.66 0.00 35.67 3.28
3727 4424 1.607178 CCTGCAGCATTGACCCCAA 60.607 57.895 8.66 0.00 36.61 4.12
3729 4426 1.751927 CTCCTGCAGCATTGACCCC 60.752 63.158 8.66 0.00 0.00 4.95
3730 4427 1.751927 CCTCCTGCAGCATTGACCC 60.752 63.158 8.66 0.00 0.00 4.46
3731 4428 0.106819 ATCCTCCTGCAGCATTGACC 60.107 55.000 8.66 0.00 0.00 4.02
3732 4429 1.022735 CATCCTCCTGCAGCATTGAC 58.977 55.000 8.66 0.00 0.00 3.18
3734 4431 1.107538 CCCATCCTCCTGCAGCATTG 61.108 60.000 8.66 0.91 0.00 2.82
3735 4432 1.229359 CCCATCCTCCTGCAGCATT 59.771 57.895 8.66 0.00 0.00 3.56
3736 4433 2.764737 CCCCATCCTCCTGCAGCAT 61.765 63.158 8.66 0.00 0.00 3.79
3737 4434 3.414193 CCCCATCCTCCTGCAGCA 61.414 66.667 8.66 0.00 0.00 4.41
3738 4435 4.201122 CCCCCATCCTCCTGCAGC 62.201 72.222 8.66 0.00 0.00 5.25
3739 4436 0.769776 ATACCCCCATCCTCCTGCAG 60.770 60.000 6.78 6.78 0.00 4.41
3741 4438 0.111253 CAATACCCCCATCCTCCTGC 59.889 60.000 0.00 0.00 0.00 4.85
3742 4439 1.819753 TCAATACCCCCATCCTCCTG 58.180 55.000 0.00 0.00 0.00 3.86
3743 4440 2.089408 TCATCAATACCCCCATCCTCCT 60.089 50.000 0.00 0.00 0.00 3.69
3745 4442 3.652869 TCTTCATCAATACCCCCATCCTC 59.347 47.826 0.00 0.00 0.00 3.71
3746 4443 3.680169 TCTTCATCAATACCCCCATCCT 58.320 45.455 0.00 0.00 0.00 3.24
3747 4444 4.202609 ACATCTTCATCAATACCCCCATCC 60.203 45.833 0.00 0.00 0.00 3.51
3748 4445 4.763793 CACATCTTCATCAATACCCCCATC 59.236 45.833 0.00 0.00 0.00 3.51
3749 4446 4.416513 TCACATCTTCATCAATACCCCCAT 59.583 41.667 0.00 0.00 0.00 4.00
3752 4449 4.580580 GGTTCACATCTTCATCAATACCCC 59.419 45.833 0.00 0.00 0.00 4.95
3753 4450 5.192927 TGGTTCACATCTTCATCAATACCC 58.807 41.667 0.00 0.00 0.00 3.69
3754 4451 6.949352 ATGGTTCACATCTTCATCAATACC 57.051 37.500 0.00 0.00 33.53 2.73
3767 4464 3.129287 GGCTTTGATTCGATGGTTCACAT 59.871 43.478 0.00 0.00 44.18 3.21
3769 4466 2.476185 CGGCTTTGATTCGATGGTTCAC 60.476 50.000 0.00 0.00 0.00 3.18
3770 4467 1.737236 CGGCTTTGATTCGATGGTTCA 59.263 47.619 0.00 0.00 0.00 3.18
3771 4468 1.064060 CCGGCTTTGATTCGATGGTTC 59.936 52.381 0.00 0.00 0.00 3.62
3774 4471 1.265095 CATCCGGCTTTGATTCGATGG 59.735 52.381 0.00 0.00 0.00 3.51
3775 4472 1.265095 CCATCCGGCTTTGATTCGATG 59.735 52.381 0.00 0.00 0.00 3.84
3776 4473 1.140852 TCCATCCGGCTTTGATTCGAT 59.859 47.619 0.00 0.00 0.00 3.59
3779 4476 2.575532 TCATCCATCCGGCTTTGATTC 58.424 47.619 0.00 0.00 0.00 2.52
3780 4477 2.734755 TCATCCATCCGGCTTTGATT 57.265 45.000 0.00 0.00 0.00 2.57
3781 4478 2.092212 ACTTCATCCATCCGGCTTTGAT 60.092 45.455 0.00 0.00 0.00 2.57
3782 4479 1.281867 ACTTCATCCATCCGGCTTTGA 59.718 47.619 0.00 0.00 0.00 2.69
3783 4480 1.402968 CACTTCATCCATCCGGCTTTG 59.597 52.381 0.00 0.00 0.00 2.77
3784 4481 1.683011 CCACTTCATCCATCCGGCTTT 60.683 52.381 0.00 0.00 0.00 3.51
3785 4482 0.107017 CCACTTCATCCATCCGGCTT 60.107 55.000 0.00 0.00 0.00 4.35
3786 4483 1.274703 ACCACTTCATCCATCCGGCT 61.275 55.000 0.00 0.00 0.00 5.52
3787 4484 1.097547 CACCACTTCATCCATCCGGC 61.098 60.000 0.00 0.00 0.00 6.13
3790 4487 2.787473 TGACACCACTTCATCCATCC 57.213 50.000 0.00 0.00 0.00 3.51
3791 4488 6.769822 AGAATTATGACACCACTTCATCCATC 59.230 38.462 0.00 0.00 35.31 3.51
3792 4489 6.666678 AGAATTATGACACCACTTCATCCAT 58.333 36.000 0.00 0.00 35.31 3.41
3793 4490 6.065976 AGAATTATGACACCACTTCATCCA 57.934 37.500 0.00 0.00 35.31 3.41
3794 4491 6.483640 GGTAGAATTATGACACCACTTCATCC 59.516 42.308 0.00 0.00 35.31 3.51
3795 4492 7.275920 AGGTAGAATTATGACACCACTTCATC 58.724 38.462 0.00 0.00 35.31 2.92
3796 4493 7.200434 AGGTAGAATTATGACACCACTTCAT 57.800 36.000 0.00 0.00 37.47 2.57
3797 4494 6.620877 AGGTAGAATTATGACACCACTTCA 57.379 37.500 0.00 0.00 0.00 3.02
3798 4495 7.923414 AAAGGTAGAATTATGACACCACTTC 57.077 36.000 0.00 0.00 0.00 3.01
3799 4496 9.975218 ATAAAAGGTAGAATTATGACACCACTT 57.025 29.630 0.00 0.00 0.00 3.16
3898 6325 8.100791 AGAAGTTATGTGGCAGAATGTAGTTAA 58.899 33.333 0.00 0.00 39.31 2.01
3905 6332 8.680903 AGAATAAAGAAGTTATGTGGCAGAATG 58.319 33.333 0.00 0.00 33.64 2.67
3919 6346 6.012508 TGGTGGAATCTGGAGAATAAAGAAGT 60.013 38.462 0.00 0.00 0.00 3.01
3942 6369 4.393062 GTCAGTCTCATGTGTAAATGGTGG 59.607 45.833 0.00 0.00 0.00 4.61
3979 6406 1.645919 AGGGCTGGGTATCCACAATTT 59.354 47.619 0.00 0.00 38.32 1.82
4034 6461 1.421268 AGAGCAAATGTCACTGGGTGA 59.579 47.619 0.00 0.00 40.50 4.02
4045 6472 7.411588 GCAAGAGAAAAGCAATAAGAGCAAATG 60.412 37.037 0.00 0.00 0.00 2.32
4046 6473 6.589139 GCAAGAGAAAAGCAATAAGAGCAAAT 59.411 34.615 0.00 0.00 0.00 2.32
4047 6474 5.922544 GCAAGAGAAAAGCAATAAGAGCAAA 59.077 36.000 0.00 0.00 0.00 3.68
4048 6475 5.464168 GCAAGAGAAAAGCAATAAGAGCAA 58.536 37.500 0.00 0.00 0.00 3.91
4049 6476 4.082571 GGCAAGAGAAAAGCAATAAGAGCA 60.083 41.667 0.00 0.00 0.00 4.26
4050 6477 4.082571 TGGCAAGAGAAAAGCAATAAGAGC 60.083 41.667 0.00 0.00 0.00 4.09
4051 6478 5.633830 TGGCAAGAGAAAAGCAATAAGAG 57.366 39.130 0.00 0.00 0.00 2.85
4052 6479 6.403866 TTTGGCAAGAGAAAAGCAATAAGA 57.596 33.333 0.00 0.00 0.00 2.10
4087 6514 6.071616 GCATGTTATTTGTCCACCCTTTCTAA 60.072 38.462 0.00 0.00 0.00 2.10
4092 6519 2.831526 GGCATGTTATTTGTCCACCCTT 59.168 45.455 0.00 0.00 0.00 3.95
4093 6520 2.042979 AGGCATGTTATTTGTCCACCCT 59.957 45.455 0.00 0.00 0.00 4.34
4094 6521 2.456577 AGGCATGTTATTTGTCCACCC 58.543 47.619 0.00 0.00 0.00 4.61
4095 6522 4.535526 AAAGGCATGTTATTTGTCCACC 57.464 40.909 0.00 0.00 0.00 4.61
4096 6523 6.019779 TGTAAAGGCATGTTATTTGTCCAC 57.980 37.500 0.00 0.00 0.00 4.02
4097 6524 6.435591 TCATGTAAAGGCATGTTATTTGTCCA 59.564 34.615 6.04 0.00 44.68 4.02
4098 6525 6.862209 TCATGTAAAGGCATGTTATTTGTCC 58.138 36.000 6.04 0.00 44.68 4.02
4099 6526 8.243426 TCTTCATGTAAAGGCATGTTATTTGTC 58.757 33.333 6.04 0.00 44.68 3.18
4100 6527 8.121305 TCTTCATGTAAAGGCATGTTATTTGT 57.879 30.769 6.04 0.00 44.68 2.83
4103 6530 9.590451 CATTTCTTCATGTAAAGGCATGTTATT 57.410 29.630 6.04 0.00 44.68 1.40
4104 6531 8.199449 CCATTTCTTCATGTAAAGGCATGTTAT 58.801 33.333 6.04 0.00 44.68 1.89
4105 6532 7.178274 ACCATTTCTTCATGTAAAGGCATGTTA 59.822 33.333 6.04 0.00 44.68 2.41
4106 6533 6.014327 ACCATTTCTTCATGTAAAGGCATGTT 60.014 34.615 6.04 0.00 44.68 2.71
4108 6535 5.969423 ACCATTTCTTCATGTAAAGGCATG 58.031 37.500 0.00 0.00 45.48 4.06
4111 6538 8.872845 CAATTTACCATTTCTTCATGTAAAGGC 58.127 33.333 0.00 0.00 0.00 4.35
4112 6539 9.369904 CCAATTTACCATTTCTTCATGTAAAGG 57.630 33.333 0.00 0.00 0.00 3.11
4135 6574 6.969993 AAGCTTGTTTAACCAGTATTCCAA 57.030 33.333 0.00 0.00 0.00 3.53
4137 6576 6.977213 TCAAAGCTTGTTTAACCAGTATTCC 58.023 36.000 0.00 0.00 0.00 3.01
4138 6577 9.476202 AAATCAAAGCTTGTTTAACCAGTATTC 57.524 29.630 0.00 0.00 0.00 1.75
4141 6580 9.959749 CTAAAATCAAAGCTTGTTTAACCAGTA 57.040 29.630 0.00 0.00 0.00 2.74
4182 6621 0.474660 AGAGCTGGAAACCTGTCCCT 60.475 55.000 0.00 0.00 36.80 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.