Multiple sequence alignment - TraesCS5D01G451000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G451000 chr5D 100.000 3808 0 0 1 3808 499409422 499413229 0.000000e+00 7033.0
1 TraesCS5D01G451000 chr5D 90.411 146 8 2 1541 1680 499410830 499410975 1.810000e-43 187.0
2 TraesCS5D01G451000 chr5D 90.411 146 8 2 1409 1554 499410962 499411101 1.810000e-43 187.0
3 TraesCS5D01G451000 chr5D 90.566 53 4 1 3165 3217 230018322 230018373 6.830000e-08 69.4
4 TraesCS5D01G451000 chr5D 90.566 53 4 1 3165 3217 339100531 339100480 6.830000e-08 69.4
5 TraesCS5D01G451000 chr5A 93.389 3570 156 35 289 3808 623564759 623568298 0.000000e+00 5212.0
6 TraesCS5D01G451000 chr5A 95.359 237 5 3 56 288 623564485 623564719 4.650000e-99 372.0
7 TraesCS5D01G451000 chr5A 89.726 146 9 2 1541 1680 623565876 623566021 8.400000e-42 182.0
8 TraesCS5D01G451000 chr5B 92.119 2779 137 30 289 3046 620010616 620013333 0.000000e+00 3843.0
9 TraesCS5D01G451000 chr5B 92.410 527 22 8 3289 3808 620016107 620016622 0.000000e+00 736.0
10 TraesCS5D01G451000 chr5B 96.886 289 7 2 1 288 620010288 620010575 2.060000e-132 483.0
11 TraesCS5D01G451000 chr5B 89.726 146 8 5 1409 1554 620011850 620011988 3.020000e-41 180.0
12 TraesCS5D01G451000 chr5B 89.041 146 10 3 1541 1680 620011718 620011863 3.910000e-40 176.0
13 TraesCS5D01G451000 chr5B 95.652 69 3 0 3224 3292 620013344 620013412 1.120000e-20 111.0
14 TraesCS5D01G451000 chr5B 93.617 47 3 0 3165 3211 411034821 411034775 1.900000e-08 71.3
15 TraesCS5D01G451000 chr4A 93.103 58 4 0 3159 3216 60017821 60017878 6.780000e-13 86.1
16 TraesCS5D01G451000 chrUn 95.556 45 2 0 3165 3209 101630843 101630799 5.280000e-09 73.1
17 TraesCS5D01G451000 chr7B 92.157 51 4 0 3159 3209 746315352 746315402 5.280000e-09 73.1
18 TraesCS5D01G451000 chr6D 95.556 45 2 0 3165 3209 448788103 448788059 5.280000e-09 73.1
19 TraesCS5D01G451000 chr2D 95.556 45 2 0 3165 3209 633850220 633850176 5.280000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G451000 chr5D 499409422 499413229 3807 False 2469.0 7033 93.607333 1 3808 3 chr5D.!!$F2 3807
1 TraesCS5D01G451000 chr5A 623564485 623568298 3813 False 1922.0 5212 92.824667 56 3808 3 chr5A.!!$F1 3752
2 TraesCS5D01G451000 chr5B 620010288 620016622 6334 False 921.5 3843 92.639000 1 3808 6 chr5B.!!$F1 3807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 688 0.543277 ACGGCTGTGATCATCACCAT 59.457 50.0 15.44 0.00 46.40 3.55 F
2083 2154 0.941542 CAAGAAAAAGTCGGTGCCGA 59.058 50.0 9.48 9.48 46.87 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2233 0.249447 GGCTTCCTGCAAACCAACAC 60.249 55.0 0.0 0.0 45.15 3.32 R
2892 2993 0.373716 GCACGGAGCGATTTTTCGAT 59.626 50.0 0.0 0.0 34.64 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.647658 TCATAACCGCATTTTGATCTTCACT 59.352 36.000 0.00 0.00 0.00 3.41
51 52 2.095059 ACCGCATTTTGATCTTCACTGC 60.095 45.455 0.00 0.00 0.00 4.40
91 93 3.610911 ACAACTTGCATACCTAGCTTCC 58.389 45.455 0.00 0.00 0.00 3.46
234 238 5.247862 GCACAAGAATTTCCATGGGAATTT 58.752 37.500 28.29 16.82 41.71 1.82
297 343 2.554142 TCAACTGAATATGAGCTGGCG 58.446 47.619 0.00 0.00 0.00 5.69
318 365 5.324697 GCGAAAGTAAAATACAGCTGAAGG 58.675 41.667 23.35 0.00 0.00 3.46
322 369 8.073768 CGAAAGTAAAATACAGCTGAAGGAAAA 58.926 33.333 23.35 0.00 0.00 2.29
364 411 5.403466 GCTGCTCTTTAAAATGTGGTCTTTG 59.597 40.000 0.00 0.00 0.00 2.77
466 514 4.941873 GGTTTCTAGTGGTCCAGGTTTATG 59.058 45.833 0.00 0.00 0.00 1.90
504 552 7.416154 TTGTAAGGAAAATATCTATTCGGCG 57.584 36.000 0.00 0.00 0.00 6.46
507 555 2.991190 GGAAAATATCTATTCGGCGCGA 59.009 45.455 12.10 0.00 0.00 5.87
523 571 1.502163 GCGATTCCCGATGCTTCCAG 61.502 60.000 0.00 0.00 41.76 3.86
586 637 3.454447 TGACCTTGAGTGAAAAGGACAGA 59.546 43.478 9.13 0.00 46.08 3.41
594 645 5.936372 TGAGTGAAAAGGACAGATGAATCAG 59.064 40.000 0.00 0.00 0.00 2.90
630 681 1.003003 TCAAATGGACGGCTGTGATCA 59.997 47.619 0.80 0.00 0.00 2.92
637 688 0.543277 ACGGCTGTGATCATCACCAT 59.457 50.000 15.44 0.00 46.40 3.55
677 731 6.436843 AAATTTTATTCTGGTAGTGCTCCG 57.563 37.500 0.00 0.00 0.00 4.63
708 762 5.419471 ACTCTCGGCCTGAATATTATACTCC 59.581 44.000 0.00 0.00 0.00 3.85
776 830 1.069432 CAATGTCGCATATGCTCTGGC 60.069 52.381 24.56 11.96 39.32 4.85
937 991 6.824553 TCTTGATGTTCATCCCAATCTAGAG 58.175 40.000 9.83 0.00 0.00 2.43
938 992 6.385176 TCTTGATGTTCATCCCAATCTAGAGT 59.615 38.462 9.83 0.00 0.00 3.24
939 993 6.566079 TGATGTTCATCCCAATCTAGAGTT 57.434 37.500 9.83 0.00 0.00 3.01
940 994 6.586344 TGATGTTCATCCCAATCTAGAGTTC 58.414 40.000 9.83 0.00 0.00 3.01
941 995 6.385176 TGATGTTCATCCCAATCTAGAGTTCT 59.615 38.462 9.83 0.00 0.00 3.01
942 996 7.565029 TGATGTTCATCCCAATCTAGAGTTCTA 59.435 37.037 9.83 0.00 0.00 2.10
943 997 7.353414 TGTTCATCCCAATCTAGAGTTCTAG 57.647 40.000 9.44 9.44 45.57 2.43
1164 1223 1.467342 GTGGTTAACATCCTCGGCAAC 59.533 52.381 8.10 0.00 0.00 4.17
1566 1628 2.431683 GCCAAGGGTGCAGACAGA 59.568 61.111 0.00 0.00 0.00 3.41
1608 1670 1.002134 CCTGGATTTGAGCGGGTGT 60.002 57.895 0.00 0.00 0.00 4.16
1698 1760 4.179599 CCTCCTCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1699 1761 4.179599 CTCCTCCTCCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1702 1764 4.179599 CTCCTCCCCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1733 1795 3.385755 CCTCAAATCCAATTCCACCATCC 59.614 47.826 0.00 0.00 0.00 3.51
2083 2154 0.941542 CAAGAAAAAGTCGGTGCCGA 59.058 50.000 9.48 9.48 46.87 5.54
2105 2180 5.403166 CGATTGCATTCGCCATTGATTTATT 59.597 36.000 17.01 0.00 37.32 1.40
2106 2181 6.074195 CGATTGCATTCGCCATTGATTTATTT 60.074 34.615 17.01 0.00 37.32 1.40
2107 2182 7.114670 CGATTGCATTCGCCATTGATTTATTTA 59.885 33.333 17.01 0.00 37.32 1.40
2108 2183 8.659925 ATTGCATTCGCCATTGATTTATTTAA 57.340 26.923 0.00 0.00 37.32 1.52
2113 2188 6.912203 TCGCCATTGATTTATTTAACTCGA 57.088 33.333 0.00 0.00 0.00 4.04
2118 2193 8.345565 GCCATTGATTTATTTAACTCGATCTGT 58.654 33.333 0.00 0.00 0.00 3.41
2153 2233 4.091509 GCCTTTACTTACAGTCGTGTGATG 59.908 45.833 0.00 0.00 37.52 3.07
2154 2234 5.227908 CCTTTACTTACAGTCGTGTGATGT 58.772 41.667 0.00 0.00 37.52 3.06
2368 2450 8.855110 AGTTCATTGTTATGTAATGTCACCAAA 58.145 29.630 0.00 0.00 36.97 3.28
2369 2451 9.469807 GTTCATTGTTATGTAATGTCACCAAAA 57.530 29.630 0.00 0.00 36.97 2.44
2385 2472 8.694540 TGTCACCAAAATATTATCCTTGAATGG 58.305 33.333 0.14 0.00 0.00 3.16
2388 2475 9.754382 CACCAAAATATTATCCTTGAATGGAAG 57.246 33.333 0.00 0.00 39.85 3.46
2426 2519 1.636148 AAGAAGTTGTGGGCATGCAT 58.364 45.000 21.36 0.00 0.00 3.96
2505 2603 7.341030 TGAGTGAGACATTACAATTGGATCAT 58.659 34.615 10.83 0.00 0.00 2.45
2514 2612 8.980596 ACATTACAATTGGATCATGTGGTAATT 58.019 29.630 10.83 0.00 30.28 1.40
2725 2824 3.452786 CTCCGAAGCCTGCCGAGA 61.453 66.667 0.00 0.00 0.00 4.04
2727 2826 4.821589 CCGAAGCCTGCCGAGACC 62.822 72.222 0.00 0.00 0.00 3.85
2881 2982 4.036734 GTGAGCACTTGATTGTCCTTTTGA 59.963 41.667 0.00 0.00 0.00 2.69
2892 2993 9.527157 TTGATTGTCCTTTTGAATTGTATCCTA 57.473 29.630 0.00 0.00 0.00 2.94
3046 3147 2.534349 GCTTGTCACATACGTATGACCG 59.466 50.000 35.81 23.92 43.84 4.79
3081 3182 2.098280 AGTAGACGTGCTGCTGTATGAG 59.902 50.000 7.86 0.00 38.22 2.90
3107 3208 7.524912 CAACTCTATCAATCAAGACACCAAAG 58.475 38.462 0.00 0.00 0.00 2.77
3126 3227 6.015519 ACCAAAGCTTGCATTACAATTACAGA 60.016 34.615 0.00 0.00 37.72 3.41
3130 3231 6.095377 AGCTTGCATTACAATTACAGAAAGC 58.905 36.000 0.00 0.00 37.72 3.51
3136 3237 5.873179 TTACAATTACAGAAAGCCGGAAG 57.127 39.130 5.05 0.00 0.00 3.46
3152 3253 3.375299 CCGGAAGCTAAAAACCTCATCTG 59.625 47.826 0.00 0.00 0.00 2.90
3183 3284 3.884091 TCCCTCTAGTGATCTAAACGCTC 59.116 47.826 0.00 0.00 0.00 5.03
3187 3288 6.207810 CCCTCTAGTGATCTAAACGCTCTTAT 59.792 42.308 0.00 0.00 0.00 1.73
3202 3303 6.978338 ACGCTCTTATATTTCATTACGGAGA 58.022 36.000 0.00 0.00 0.00 3.71
3233 3335 2.355756 ACTATGGTCGCAAATCACATGC 59.644 45.455 0.00 0.00 40.41 4.06
3266 3368 3.130280 TGAGCTTGACACATGACATGT 57.870 42.857 15.48 15.48 46.22 3.21
3402 6204 6.129168 CGTGATGTTAAGCGTATCTTATGGAC 60.129 42.308 0.00 0.00 37.14 4.02
3426 6228 0.590682 ATTGTGCGCATCAACGACAA 59.409 45.000 15.91 11.91 37.42 3.18
3427 6229 0.316607 TTGTGCGCATCAACGACAAC 60.317 50.000 15.91 0.00 32.31 3.32
3428 6230 1.788203 GTGCGCATCAACGACAACG 60.788 57.895 15.91 0.00 45.75 4.10
3429 6231 2.865151 GCGCATCAACGACAACGC 60.865 61.111 0.30 0.00 43.96 4.84
3461 6271 3.613671 CGCTCGAGAGATCAAGCCAATAT 60.614 47.826 18.75 0.00 40.84 1.28
3550 6360 8.985922 TCATGATTTATATAGATGTCCAGAGGG 58.014 37.037 0.00 0.00 0.00 4.30
3551 6361 7.187824 TGATTTATATAGATGTCCAGAGGGC 57.812 40.000 0.00 0.00 0.00 5.19
3554 6368 2.783379 ATAGATGTCCAGAGGGCTCA 57.217 50.000 0.00 0.00 0.00 4.26
3670 6488 3.102052 AGCTGCAAAACATTGACCAAG 57.898 42.857 1.02 0.00 0.00 3.61
3672 6490 3.322828 AGCTGCAAAACATTGACCAAGAT 59.677 39.130 1.02 0.00 0.00 2.40
3783 6603 6.131264 TCAAGAGAATCATGGTGGCATTAAT 58.869 36.000 0.00 0.00 37.82 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.523015 GCAGTGAAGATCAAAATGCGG 58.477 47.619 0.00 0.00 0.00 5.69
49 50 9.373603 AGTTGTTAGTACAATACAATAATCGCA 57.626 29.630 9.64 0.00 45.41 5.10
234 238 6.019075 CGTCATCTCAAGTAAGACACACAAAA 60.019 38.462 0.00 0.00 0.00 2.44
297 343 9.181805 GTTTTCCTTCAGCTGTATTTTACTTTC 57.818 33.333 14.67 0.00 0.00 2.62
318 365 5.302357 CTTGGTGAGCAGGATAAGTTTTC 57.698 43.478 0.00 0.00 0.00 2.29
364 411 3.312697 AGAAACGAAGTGAAGACTTTGCC 59.687 43.478 0.00 0.00 45.00 4.52
466 514 8.474006 TTTTCCTTACAAAGAAAGTTTTCAGC 57.526 30.769 7.30 0.00 39.61 4.26
495 543 2.372690 CGGGAATCGCGCCGAATAG 61.373 63.158 16.49 0.00 39.99 1.73
504 552 1.502163 CTGGAAGCATCGGGAATCGC 61.502 60.000 0.00 0.00 39.05 4.58
507 555 0.749454 GCACTGGAAGCATCGGGAAT 60.749 55.000 0.00 0.00 37.60 3.01
517 565 3.119708 GCTGGTCAATTAAGCACTGGAAG 60.120 47.826 0.00 0.00 42.29 3.46
586 637 0.536687 CGGCCAGGATGCTGATTCAT 60.537 55.000 16.85 0.00 40.15 2.57
594 645 2.663188 GATCGACGGCCAGGATGC 60.663 66.667 2.24 0.00 31.97 3.91
630 681 4.018960 AGCAAAGTCAACTAGGATGGTGAT 60.019 41.667 0.00 0.00 0.00 3.06
708 762 0.451783 GTGCAGGAAGTAATTGGCGG 59.548 55.000 0.00 0.00 0.00 6.13
776 830 2.550208 GGCGACTTTATACAGGGATGGG 60.550 54.545 0.00 0.00 0.00 4.00
857 911 2.196382 ACATGCAGAAGCTTGCGCAG 62.196 55.000 20.47 15.43 46.58 5.18
937 991 6.238925 GGAATCAAGGAGCTCTAGTCTAGAAC 60.239 46.154 14.64 6.61 33.75 3.01
938 992 5.830991 GGAATCAAGGAGCTCTAGTCTAGAA 59.169 44.000 14.64 0.00 33.75 2.10
939 993 5.103898 TGGAATCAAGGAGCTCTAGTCTAGA 60.104 44.000 14.64 9.28 0.00 2.43
940 994 5.136828 TGGAATCAAGGAGCTCTAGTCTAG 58.863 45.833 14.64 0.00 0.00 2.43
941 995 5.130705 TGGAATCAAGGAGCTCTAGTCTA 57.869 43.478 14.64 1.42 0.00 2.59
942 996 3.987745 TGGAATCAAGGAGCTCTAGTCT 58.012 45.455 14.64 0.00 0.00 3.24
943 997 4.953940 ATGGAATCAAGGAGCTCTAGTC 57.046 45.455 14.64 5.84 0.00 2.59
944 998 4.685575 GCAATGGAATCAAGGAGCTCTAGT 60.686 45.833 14.64 0.00 0.00 2.57
1032 1091 2.031516 CCTCTTGCAGCTCACCACG 61.032 63.158 0.00 0.00 0.00 4.94
1164 1223 3.136123 CTCGCATGGCCAACCCTG 61.136 66.667 10.96 4.15 34.86 4.45
1556 1618 3.037431 AGAACATGTCTCTGTCTGCAC 57.963 47.619 0.00 0.00 0.00 4.57
1558 1620 2.999355 GGAAGAACATGTCTCTGTCTGC 59.001 50.000 0.00 0.00 34.56 4.26
1602 1664 1.140375 GGGAGTAACGCTACACCCG 59.860 63.158 14.55 0.00 45.52 5.28
1698 1760 2.492599 TTTGAGGAGGAGGGGGAGGG 62.493 65.000 0.00 0.00 0.00 4.30
1699 1761 0.327964 ATTTGAGGAGGAGGGGGAGG 60.328 60.000 0.00 0.00 0.00 4.30
1700 1762 1.135960 GATTTGAGGAGGAGGGGGAG 58.864 60.000 0.00 0.00 0.00 4.30
1701 1763 0.327576 GGATTTGAGGAGGAGGGGGA 60.328 60.000 0.00 0.00 0.00 4.81
1702 1764 0.624500 TGGATTTGAGGAGGAGGGGG 60.625 60.000 0.00 0.00 0.00 5.40
1703 1765 1.298953 TTGGATTTGAGGAGGAGGGG 58.701 55.000 0.00 0.00 0.00 4.79
1704 1766 3.560105 GAATTGGATTTGAGGAGGAGGG 58.440 50.000 0.00 0.00 0.00 4.30
1733 1795 2.311080 CTGCTGCTGCTGCTGAATCG 62.311 60.000 27.67 9.21 40.01 3.34
2064 2135 0.941542 TCGGCACCGACTTTTTCTTG 59.058 50.000 7.89 0.00 44.01 3.02
2083 2154 8.550376 GTTAAATAAATCAATGGCGAATGCAAT 58.450 29.630 0.00 0.00 45.35 3.56
2085 2156 7.264221 AGTTAAATAAATCAATGGCGAATGCA 58.736 30.769 0.00 0.00 45.35 3.96
2090 2161 6.912203 TCGAGTTAAATAAATCAATGGCGA 57.088 33.333 2.13 0.00 31.23 5.54
2113 2188 1.361668 GGCACACGCAATCGACAGAT 61.362 55.000 0.00 0.00 41.24 2.90
2118 2193 0.793861 GTAAAGGCACACGCAATCGA 59.206 50.000 0.00 0.00 41.24 3.59
2153 2233 0.249447 GGCTTCCTGCAAACCAACAC 60.249 55.000 0.00 0.00 45.15 3.32
2154 2234 1.733402 CGGCTTCCTGCAAACCAACA 61.733 55.000 0.00 0.00 45.15 3.33
2342 2422 7.994425 TGGTGACATTACATAACAATGAACT 57.006 32.000 2.29 0.00 36.95 3.01
2385 2472 8.154649 TCTTACTGACATTTCCAAGTTTCTTC 57.845 34.615 0.00 0.00 0.00 2.87
2388 2475 7.931275 ACTTCTTACTGACATTTCCAAGTTTC 58.069 34.615 0.00 0.00 0.00 2.78
2395 2482 5.048713 CCCACAACTTCTTACTGACATTTCC 60.049 44.000 0.00 0.00 0.00 3.13
2426 2519 0.741927 TGAGATCGACACGGCTACGA 60.742 55.000 0.00 0.00 44.60 3.43
2505 2603 3.283751 CCCGCCTGAATTAATTACCACA 58.716 45.455 0.00 0.00 0.00 4.17
2514 2612 5.305902 TCATACTTCATACCCGCCTGAATTA 59.694 40.000 0.00 0.00 31.39 1.40
2725 2824 1.909781 TTCTTCTGGTACCGGCGGT 60.910 57.895 35.91 35.91 40.16 5.68
2727 2826 0.458025 GAGTTCTTCTGGTACCGGCG 60.458 60.000 16.58 9.49 0.00 6.46
2770 2869 0.682209 GGTCAGGCTGAATGGCATGT 60.682 55.000 20.62 0.00 43.32 3.21
2881 2982 7.095187 GGAGCGATTTTTCGATAGGATACAATT 60.095 37.037 0.00 0.00 34.86 2.32
2892 2993 0.373716 GCACGGAGCGATTTTTCGAT 59.626 50.000 0.00 0.00 34.64 3.59
2944 3045 5.063312 TGAAAACAAAACAAGCAAAGCTAGC 59.937 36.000 6.62 6.62 38.25 3.42
3046 3147 5.035443 CACGTCTACTAGAACATTAGGCAC 58.965 45.833 0.00 0.00 0.00 5.01
3081 3182 4.937620 TGGTGTCTTGATTGATAGAGTTGC 59.062 41.667 0.00 0.00 0.00 4.17
3092 3193 2.694628 TGCAAGCTTTGGTGTCTTGATT 59.305 40.909 0.00 0.00 39.48 2.57
3107 3208 5.289434 GGCTTTCTGTAATTGTAATGCAAGC 59.711 40.000 0.00 0.00 40.86 4.01
3130 3231 3.375299 CAGATGAGGTTTTTAGCTTCCGG 59.625 47.826 0.00 0.00 0.00 5.14
3136 3237 7.100409 AGTACTTCTCAGATGAGGTTTTTAGC 58.900 38.462 9.87 0.00 42.30 3.09
3152 3253 5.937111 AGATCACTAGAGGGAGTACTTCTC 58.063 45.833 15.32 15.32 42.07 2.87
3183 3284 9.843334 GGTACTCTCTCCGTAATGAAATATAAG 57.157 37.037 0.00 0.00 0.00 1.73
3187 3288 8.844244 GTTAGGTACTCTCTCCGTAATGAAATA 58.156 37.037 0.00 0.00 41.75 1.40
3190 3291 6.421485 AGTTAGGTACTCTCTCCGTAATGAA 58.579 40.000 0.00 0.00 41.75 2.57
3193 3294 6.941436 CCATAGTTAGGTACTCTCTCCGTAAT 59.059 42.308 0.00 0.00 41.75 1.89
3202 3303 3.894759 TGCGACCATAGTTAGGTACTCT 58.105 45.455 0.00 0.00 40.09 3.24
3207 3308 4.189231 GTGATTTGCGACCATAGTTAGGT 58.811 43.478 0.00 0.00 43.46 3.08
3292 3394 4.388485 TGCGATGATAATATGTGCAACCT 58.612 39.130 0.00 0.00 34.36 3.50
3293 3395 4.452114 TCTGCGATGATAATATGTGCAACC 59.548 41.667 0.00 0.00 34.36 3.77
3402 6204 3.297979 GTCGTTGATGCGCACAATTAAAG 59.702 43.478 14.90 2.61 0.00 1.85
3461 6271 9.842775 GAATATATCTGAAGCAATCATCCCATA 57.157 33.333 0.00 0.00 37.44 2.74
3537 6347 1.422531 GATGAGCCCTCTGGACATCT 58.577 55.000 0.00 0.00 40.53 2.90
3538 6348 0.396060 GGATGAGCCCTCTGGACATC 59.604 60.000 0.00 0.00 41.73 3.06
3540 6350 4.056805 GGATGAGCCCTCTGGACA 57.943 61.111 0.00 0.00 0.00 4.02
3549 6359 1.685148 GACTGGATTTGGGATGAGCC 58.315 55.000 0.00 0.00 0.00 4.70
3550 6360 1.064463 TGGACTGGATTTGGGATGAGC 60.064 52.381 0.00 0.00 0.00 4.26
3551 6361 2.240667 ACTGGACTGGATTTGGGATGAG 59.759 50.000 0.00 0.00 0.00 2.90
3554 6368 1.285962 CCACTGGACTGGATTTGGGAT 59.714 52.381 0.00 0.00 32.30 3.85
3558 6372 2.372264 CATCCCACTGGACTGGATTTG 58.628 52.381 0.00 0.00 45.58 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.