AutoCloner

Multiple sequence alignment - TraesCS5D01G450300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G450300	chr5D	100.000	3146	0	0	1	3146	498767402	498770547	0.000000e+00	5810
1	TraesCS5D01G450300	chr5D	95.161	248	12	0	1	248	539996548	539996795	2.940000e-105	392
2	TraesCS5D01G450300	chr5D	95.161	248	11	1	1	248	391320918	391320672	1.060000e-104	390
3	TraesCS5D01G450300	chr5D	94.758	248	13	0	1	248	267620686	267620933	1.370000e-103	387
4	TraesCS5D01G450300	chr5D	94.758	248	13	0	1	248	423273286	423273533	1.370000e-103	387
5	TraesCS5D01G450300	chr5D	94.758	248	13	0	1	248	559113822	559114069	1.370000e-103	387
6	TraesCS5D01G450300	chr5D	92.381	105	8	0	254	358	559115880	559115984	1.950000e-32	150
7	TraesCS5D01G450300	chr5D	97.183	71	2	0	254	324	528691502	528691572	1.530000e-23	121
8	TraesCS5D01G450300	chr5D	95.833	72	3	0	253	324	423275369	423275440	1.980000e-22	117
9	TraesCS5D01G450300	chr5B	91.387	2589	114	23	576	3146	618468448	618470945	0.000000e+00	3445
10	TraesCS5D01G450300	chr5A	91.337	2528	115	46	646	3146	623205813	623208263	0.000000e+00	3360
11	TraesCS5D01G450300	chr5A	90.312	320	22	4	2825	3140	623209720	623210034	8.120000e-111	411
12	TraesCS5D01G450300	chr5A	91.391	151	10	1	351	501	623204674	623204821	1.480000e-48	204
13	TraesCS5D01G450300	chr1B	77.334	1178	214	29	864	2022	583424386	583425529	0.000000e+00	647
14	TraesCS5D01G450300	chr1B	95.833	72	3	0	253	324	458701469	458701540	1.980000e-22	117
15	TraesCS5D01G450300	chr3A	78.404	852	152	18	1205	2036	729788497	729789336	2.780000e-145	525
16	TraesCS5D01G450300	chr3A	76.080	903	188	18	1133	2021	730323491	730322603	2.230000e-121	446
17	TraesCS5D01G450300	chr2D	87.164	483	32	9	2299	2779	513987745	513988199	3.600000e-144	521
18	TraesCS5D01G450300	chr3D	76.402	945	200	17	1084	2021	600548798	600549726	3.650000e-134	488
19	TraesCS5D01G450300	chr1D	73.068	1255	309	17	796	2044	96906947	96905716	4.850000e-113	418
20	TraesCS5D01G450300	chr1D	95.968	248	8	1	1	248	411729348	411729593	4.890000e-108	401
21	TraesCS5D01G450300	chr1D	93.827	81	5	0	247	327	411731458	411731538	4.260000e-24	122
22	TraesCS5D01G450300	chr7D	87.047	386	20	11	2288	2672	178175968	178175612	2.920000e-110	409
23	TraesCS5D01G450300	chr7D	95.968	248	9	1	1	248	458159675	458159921	4.890000e-108	401
24	TraesCS5D01G450300	chr7D	94.758	248	13	0	1	248	587076525	587076278	1.370000e-103	387
25	TraesCS5D01G450300	chr7D	95.946	74	3	0	254	327	413242041	413241968	1.530000e-23	121
26	TraesCS5D01G450300	chr7D	97.143	70	2	0	254	323	587074472	587074403	5.510000e-23	119
27	TraesCS5D01G450300	chr6D	96.371	248	9	0	1	248	473051250	473051497	2.920000e-110	409
28	TraesCS5D01G450300	chr1A	73.116	1168	284	18	885	2044	91417574	91416429	1.060000e-104	390
29	TraesCS5D01G450300	chr6A	95.775	71	3	0	254	324	286337409	286337479	7.130000e-22	115
30	TraesCS5D01G450300	chr4D	95.775	71	3	0	254	324	386142793	386142863	7.130000e-22	115

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G450300	chr5D	498767402	498770547	3145	False	5810.0	5810	100.000000	1	3146	1	chr5D.!!$F2	3145
1	TraesCS5D01G450300	chr5D	559113822	559115984	2162	False	268.5	387	93.569500	1	358	2	chr5D.!!$F6	357
2	TraesCS5D01G450300	chr5D	423273286	423275440	2154	False	252.0	387	95.295500	1	324	2	chr5D.!!$F5	323
3	TraesCS5D01G450300	chr5B	618468448	618470945	2497	False	3445.0	3445	91.387000	576	3146	1	chr5B.!!$F1	2570
4	TraesCS5D01G450300	chr5A	623204674	623210034	5360	False	1325.0	3360	91.013333	351	3146	3	chr5A.!!$F1	2795
5	TraesCS5D01G450300	chr1B	583424386	583425529	1143	False	647.0	647	77.334000	864	2022	1	chr1B.!!$F2	1158
6	TraesCS5D01G450300	chr3A	729788497	729789336	839	False	525.0	525	78.404000	1205	2036	1	chr3A.!!$F1	831
7	TraesCS5D01G450300	chr3A	730322603	730323491	888	True	446.0	446	76.080000	1133	2021	1	chr3A.!!$R1	888
8	TraesCS5D01G450300	chr3D	600548798	600549726	928	False	488.0	488	76.402000	1084	2021	1	chr3D.!!$F1	937
9	TraesCS5D01G450300	chr1D	96905716	96906947	1231	True	418.0	418	73.068000	796	2044	1	chr1D.!!$R1	1248
10	TraesCS5D01G450300	chr1D	411729348	411731538	2190	False	261.5	401	94.897500	1	327	2	chr1D.!!$F1	326
11	TraesCS5D01G450300	chr7D	587074403	587076525	2122	True	253.0	387	95.950500	1	323	2	chr7D.!!$R3	322
12	TraesCS5D01G450300	chr1A	91416429	91417574	1145	True	390.0	390	73.116000	885	2044	1	chr1A.!!$R1	1159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
494	2437	0.748729	AGAGGAAGACCGAGGCTACG	60.749	60.0	0.0	0.0	41.83	3.51	F
1078	3887	0.038251	TCATCACCACGCTCTCACAC	60.038	55.0	0.0	0.0	0.00	3.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2113	4970	2.206635	CAGATCTGGAAGCCTCGGT	58.793	57.895	15.38	0.0	0.00	4.69	R
2949	5814	0.506506	CAAATGGCAACGAAAACGCC	59.493	50.000	0.00	0.0	46.43	5.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
170	173	2.591429	CTTGCAGGGCGTGTGACA	60.591	61.111	9.16	0.00	0.00	3.58
274	2217	2.485122	GCTGCATTTTAGCGCGGT	59.515	55.556	17.70	17.70	36.85	5.68
318	2261	2.642700	CAAAACCAGGCGAACGGG	59.357	61.111	0.00	0.00	40.66	5.28
378	2321	1.378911	GGGTGATGCATGGCTCACA	60.379	57.895	17.49	0.33	42.83	3.58
379	2322	1.381928	GGGTGATGCATGGCTCACAG	61.382	60.000	17.49	0.00	42.83	3.66
384	2327	1.022982	ATGCATGGCTCACAGTCGTG	61.023	55.000	0.00	0.00	45.08	4.35
390	2333	2.050077	CTCACAGTCGTGCGAGCA	60.050	61.111	0.00	0.00	43.28	4.26
391	2334	1.661509	CTCACAGTCGTGCGAGCAA	60.662	57.895	0.00	0.00	43.28	3.91
405	2348	2.802816	GCGAGCAATATCGGAAGACAAT	59.197	45.455	0.00	0.00	46.97	2.71
429	2372	4.401202	TCGTCAAATGTATAGCACTCCTCA	59.599	41.667	0.00	0.00	0.00	3.86
436	2379	4.610333	TGTATAGCACTCCTCAGGAAAGA	58.390	43.478	0.00	0.00	0.00	2.52
440	2383	2.039613	AGCACTCCTCAGGAAAGAAAGG	59.960	50.000	0.00	0.00	0.00	3.11
494	2437	0.748729	AGAGGAAGACCGAGGCTACG	60.749	60.000	0.00	0.00	41.83	3.51
514	2457	7.520119	CTACGTAAGCACAAACAGATAATGA	57.480	36.000	0.00	0.00	45.62	2.57
515	2458	6.795098	ACGTAAGCACAAACAGATAATGAA	57.205	33.333	0.00	0.00	45.62	2.57
516	2459	7.197071	ACGTAAGCACAAACAGATAATGAAA	57.803	32.000	0.00	0.00	45.62	2.69
517	2460	7.644490	ACGTAAGCACAAACAGATAATGAAAA	58.356	30.769	0.00	0.00	45.62	2.29
518	2461	7.803189	ACGTAAGCACAAACAGATAATGAAAAG	59.197	33.333	0.00	0.00	45.62	2.27
519	2462	8.015087	CGTAAGCACAAACAGATAATGAAAAGA	58.985	33.333	0.00	0.00	0.00	2.52
520	2463	9.677567	GTAAGCACAAACAGATAATGAAAAGAA	57.322	29.630	0.00	0.00	0.00	2.52
522	2465	8.807667	AGCACAAACAGATAATGAAAAGAAAG	57.192	30.769	0.00	0.00	0.00	2.62
523	2466	8.632679	AGCACAAACAGATAATGAAAAGAAAGA	58.367	29.630	0.00	0.00	0.00	2.52
524	2467	8.694394	GCACAAACAGATAATGAAAAGAAAGAC	58.306	33.333	0.00	0.00	0.00	3.01
526	2469	9.956720	ACAAACAGATAATGAAAAGAAAGACTG	57.043	29.630	0.00	0.00	0.00	3.51
536	2479	9.710900	AATGAAAAGAAAGACTGAAAACAAGTT	57.289	25.926	0.00	0.00	0.00	2.66
545	2488	9.797556	AAAGACTGAAAACAAGTTAATTACCAC	57.202	29.630	0.00	0.00	0.00	4.16
546	2489	8.747538	AGACTGAAAACAAGTTAATTACCACT	57.252	30.769	0.00	0.00	0.00	4.00
567	2510	9.384764	ACCACTTCAATAAGTAAGCTTTATCTC	57.615	33.333	3.20	0.00	44.28	2.75
568	2511	8.831550	CCACTTCAATAAGTAAGCTTTATCTCC	58.168	37.037	3.20	0.00	44.28	3.71
569	2512	9.606631	CACTTCAATAAGTAAGCTTTATCTCCT	57.393	33.333	3.20	0.00	44.28	3.69
572	2858	7.736893	TCAATAAGTAAGCTTTATCTCCTCCC	58.263	38.462	3.20	0.00	36.22	4.30
574	2860	7.691993	ATAAGTAAGCTTTATCTCCTCCCAA	57.308	36.000	3.20	0.00	36.22	4.12
610	2896	6.159293	ACATGATATACACTTGTATCGCCAG	58.841	40.000	5.14	0.00	41.18	4.85
629	3167	3.947834	CCAGGTCACCAGATTGAATTACC	59.052	47.826	0.00	0.00	0.00	2.85
679	3469	2.453080	GGTGCATTGCATTGATACACG	58.547	47.619	15.49	0.00	41.91	4.49
737	3538	4.093850	ACGACAGTGAAACCAAAAGTACAC	59.906	41.667	0.00	0.00	37.80	2.90
1078	3887	0.038251	TCATCACCACGCTCTCACAC	60.038	55.000	0.00	0.00	0.00	3.82
1104	3919	1.801913	CGTCGCTCAGCTGGTACAC	60.802	63.158	15.13	5.36	0.00	2.90
1434	4272	2.892425	GGCGATCTTGGCGACCAG	60.892	66.667	0.00	0.00	33.81	4.00
2330	5189	1.341209	CCTGGGATCGATCGACATTCA	59.659	52.381	22.06	14.76	0.00	2.57
2368	5227	3.071206	GCTGTCGCAGAGGAGGGA	61.071	66.667	10.46	0.00	36.95	4.20
2371	5230	2.750637	GTCGCAGAGGAGGGACGA	60.751	66.667	0.00	0.00	40.81	4.20
2372	5231	2.438614	TCGCAGAGGAGGGACGAG	60.439	66.667	0.00	0.00	0.00	4.18
2373	5232	3.522731	CGCAGAGGAGGGACGAGG	61.523	72.222	0.00	0.00	0.00	4.63
2374	5233	3.151022	GCAGAGGAGGGACGAGGG	61.151	72.222	0.00	0.00	0.00	4.30
2375	5234	2.684104	CAGAGGAGGGACGAGGGA	59.316	66.667	0.00	0.00	0.00	4.20
2376	5235	1.454847	CAGAGGAGGGACGAGGGAG	60.455	68.421	0.00	0.00	0.00	4.30
2377	5236	2.835895	GAGGAGGGACGAGGGAGC	60.836	72.222	0.00	0.00	0.00	4.70
2378	5237	4.824515	AGGAGGGACGAGGGAGCG	62.825	72.222	0.00	0.00	37.29	5.03
2379	5238	4.816984	GGAGGGACGAGGGAGCGA	62.817	72.222	0.00	0.00	34.83	4.93
2380	5239	3.519930	GAGGGACGAGGGAGCGAC	61.520	72.222	0.00	0.00	34.83	5.19
2894	5759	2.557805	CGCTGCGATTTGTGTGCT	59.442	55.556	18.66	0.00	0.00	4.40
2955	5820	2.163818	TCGTCAGAGAATTGGCGTTT	57.836	45.000	0.00	0.00	45.73	3.60
2956	5821	2.489971	TCGTCAGAGAATTGGCGTTTT	58.510	42.857	0.00	0.00	45.73	2.43
2957	5822	2.478894	TCGTCAGAGAATTGGCGTTTTC	59.521	45.455	0.00	0.00	45.73	2.29
2958	5823	2.721797	CGTCAGAGAATTGGCGTTTTCG	60.722	50.000	0.00	0.00	41.02	3.46
2959	5824	2.223377	GTCAGAGAATTGGCGTTTTCGT	59.777	45.455	0.00	0.00	46.03	3.85
2960	5825	2.875933	TCAGAGAATTGGCGTTTTCGTT	59.124	40.909	0.00	0.00	46.03	3.85
2961	5826	2.973224	CAGAGAATTGGCGTTTTCGTTG	59.027	45.455	0.00	0.00	46.03	4.10
2962	5827	1.713932	GAGAATTGGCGTTTTCGTTGC	59.286	47.619	0.00	0.00	46.03	4.17
2968	5833	3.996017	GCGTTTTCGTTGCCATTTG	57.004	47.368	0.00	0.00	46.03	2.32
2969	5834	0.111310	GCGTTTTCGTTGCCATTTGC	60.111	50.000	0.00	0.00	46.03	3.68
2985	5856	4.156922	CCATTTGCTTCGTTGTATGGGTTA	59.843	41.667	0.00	0.00	31.15	2.85
2988	5859	6.671614	TTTGCTTCGTTGTATGGGTTATAG	57.328	37.500	0.00	0.00	0.00	1.31
2989	5860	5.601583	TGCTTCGTTGTATGGGTTATAGA	57.398	39.130	0.00	0.00	0.00	1.98
3096	7757	2.652590	TCGGAGAGGCTAACTTCTACC	58.347	52.381	0.00	0.00	0.00	3.18
3140	7802	1.063031	GTTTGCGGCTCATGCTTTTC	58.937	50.000	0.00	0.00	39.59	2.29

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	51	1.325476	GCATTGGGGAGCTTTGAGGG	61.325	60.000	0.00	0.00	0.00	4.30
74	77	2.034221	GCCTTGCCCTTCTTCGGT	59.966	61.111	0.00	0.00	0.00	4.69
327	2270	1.374631	CTCCAACAGCTGCGCTACA	60.375	57.895	15.27	0.00	36.40	2.74
329	2272	0.460811	CATCTCCAACAGCTGCGCTA	60.461	55.000	15.27	0.00	36.40	4.26
378	2321	0.595053	CCGATATTGCTCGCACGACT	60.595	55.000	0.00	0.00	37.33	4.18
379	2322	0.594028	TCCGATATTGCTCGCACGAC	60.594	55.000	0.00	0.00	37.33	4.34
384	2327	1.852942	TGTCTTCCGATATTGCTCGC	58.147	50.000	0.00	0.00	37.33	5.03
405	2348	5.105513	TGAGGAGTGCTATACATTTGACGAA	60.106	40.000	0.00	0.00	0.00	3.85
420	2363	2.224646	ACCTTTCTTTCCTGAGGAGTGC	60.225	50.000	0.00	0.00	31.21	4.40
429	2372	4.421131	TGCTCTCTCTACCTTTCTTTCCT	58.579	43.478	0.00	0.00	0.00	3.36
436	2379	6.609876	TCTCTATCATGCTCTCTCTACCTTT	58.390	40.000	0.00	0.00	0.00	3.11
440	2383	8.677300	CCTAAATCTCTATCATGCTCTCTCTAC	58.323	40.741	0.00	0.00	0.00	2.59
494	2437	9.677567	TTCTTTTCATTATCTGTTTGTGCTTAC	57.322	29.630	0.00	0.00	0.00	2.34
519	2462	9.797556	GTGGTAATTAACTTGTTTTCAGTCTTT	57.202	29.630	1.50	0.00	0.00	2.52
520	2463	9.185680	AGTGGTAATTAACTTGTTTTCAGTCTT	57.814	29.630	1.50	0.00	0.00	3.01
522	2465	9.447040	GAAGTGGTAATTAACTTGTTTTCAGTC	57.553	33.333	7.18	0.00	36.77	3.51
523	2466	8.962679	TGAAGTGGTAATTAACTTGTTTTCAGT	58.037	29.630	7.18	0.00	36.77	3.41
524	2467	9.796120	TTGAAGTGGTAATTAACTTGTTTTCAG	57.204	29.630	7.18	0.00	36.77	3.02
541	2484	9.384764	GAGATAAAGCTTACTTATTGAAGTGGT	57.615	33.333	0.00	0.00	45.74	4.16
542	2485	8.831550	GGAGATAAAGCTTACTTATTGAAGTGG	58.168	37.037	0.00	0.00	45.74	4.00
545	2488	9.267084	GGAGGAGATAAAGCTTACTTATTGAAG	57.733	37.037	0.00	0.00	34.05	3.02
546	2489	8.211629	GGGAGGAGATAAAGCTTACTTATTGAA	58.788	37.037	0.00	0.00	34.05	2.69
551	2494	7.504926	TTTGGGAGGAGATAAAGCTTACTTA	57.495	36.000	0.00	0.00	34.05	2.24
553	2496	6.012421	AGTTTTGGGAGGAGATAAAGCTTACT	60.012	38.462	0.00	0.00	0.00	2.24
554	2497	6.094186	CAGTTTTGGGAGGAGATAAAGCTTAC	59.906	42.308	0.00	0.00	0.00	2.34
556	2499	5.012893	CAGTTTTGGGAGGAGATAAAGCTT	58.987	41.667	0.00	0.00	0.00	3.74
557	2500	4.568592	CCAGTTTTGGGAGGAGATAAAGCT	60.569	45.833	0.00	0.00	41.05	3.74
559	2502	3.696548	GCCAGTTTTGGGAGGAGATAAAG	59.303	47.826	0.00	0.00	45.16	1.85
560	2503	3.075283	TGCCAGTTTTGGGAGGAGATAAA	59.925	43.478	0.00	0.00	45.16	1.40
563	2506	1.075601	TGCCAGTTTTGGGAGGAGAT	58.924	50.000	0.00	0.00	45.16	2.75
564	2507	2.550787	TGCCAGTTTTGGGAGGAGA	58.449	52.632	0.00	0.00	45.16	3.71
572	2858	7.433131	GTGTATATCATGTTCATGCCAGTTTTG	59.567	37.037	7.80	0.00	0.00	2.44
574	2860	6.830324	AGTGTATATCATGTTCATGCCAGTTT	59.170	34.615	7.80	0.00	0.00	2.66
610	2896	3.374058	CGTGGTAATTCAATCTGGTGACC	59.626	47.826	0.00	0.00	0.00	4.02
629	3167	5.530519	TTACTTATGCAAGCTTTCTCGTG	57.469	39.130	0.00	0.00	34.94	4.35
679	3469	6.072112	TGTTCTGTTGATGAGCCTTAAAAC	57.928	37.500	0.00	0.00	0.00	2.43
722	3512	4.102649	GCAGTGTGTGTACTTTTGGTTTC	58.897	43.478	0.00	0.00	0.00	2.78
723	3513	3.508012	TGCAGTGTGTGTACTTTTGGTTT	59.492	39.130	0.00	0.00	0.00	3.27
1049	3858	2.327343	TGGTGATGAGCGCTGCAAC	61.327	57.895	18.48	13.92	0.00	4.17
1078	3887	4.504916	CTGAGCGACGGGGAGCAG	62.505	72.222	0.00	0.00	35.48	4.24
1091	3906	1.154016	CCGACGTGTACCAGCTGAG	60.154	63.158	17.39	8.04	0.00	3.35
1096	3911	1.080974	GTCCACCGACGTGTACCAG	60.081	63.158	0.00	0.00	38.41	4.00
1980	4834	2.383527	GCCAACCTGCTTCTCGACG	61.384	63.158	0.00	0.00	0.00	5.12
2047	4901	4.925861	GCCGCCATGGAGGAGAGC	62.926	72.222	36.03	17.80	40.01	4.09
2113	4970	2.206635	CAGATCTGGAAGCCTCGGT	58.793	57.895	15.38	0.00	0.00	4.69
2193	5052	4.100084	CCCATGAGCCCGCAGTCA	62.100	66.667	0.00	0.00	0.00	3.41
2330	5189	4.235762	AGTGACGGCCGCTGTGTT	62.236	61.111	28.58	3.50	33.65	3.32
2420	5279	4.162690	CCGCCTTTCTCCCCGGAG	62.163	72.222	0.73	4.21	43.20	4.63
2429	5288	3.191539	CTCGCAGCTCCGCCTTTC	61.192	66.667	0.00	0.00	0.00	2.62
2829	5694	2.802667	CTTTCCACGCATCGCCTCG	61.803	63.158	0.00	0.00	0.00	4.63
2949	5814	0.506506	CAAATGGCAACGAAAACGCC	59.493	50.000	0.00	0.00	46.43	5.68
2961	5826	2.529151	CCATACAACGAAGCAAATGGC	58.471	47.619	0.00	0.00	45.30	4.40
2962	5827	2.491693	ACCCATACAACGAAGCAAATGG	59.508	45.455	0.00	0.00	34.85	3.16
2963	5828	3.848272	ACCCATACAACGAAGCAAATG	57.152	42.857	0.00	0.00	0.00	2.32
2964	5829	7.051623	TCTATAACCCATACAACGAAGCAAAT	58.948	34.615	0.00	0.00	0.00	2.32
2965	5830	6.408035	TCTATAACCCATACAACGAAGCAAA	58.592	36.000	0.00	0.00	0.00	3.68
2966	5831	5.979993	TCTATAACCCATACAACGAAGCAA	58.020	37.500	0.00	0.00	0.00	3.91
2967	5832	5.452776	CCTCTATAACCCATACAACGAAGCA	60.453	44.000	0.00	0.00	0.00	3.91
2968	5833	4.989168	CCTCTATAACCCATACAACGAAGC	59.011	45.833	0.00	0.00	0.00	3.86
2969	5834	6.158023	ACCTCTATAACCCATACAACGAAG	57.842	41.667	0.00	0.00	0.00	3.79
2985	5856	8.646004	CATACCTGCTGCATATATAACCTCTAT	58.354	37.037	1.31	0.00	0.00	1.98
2988	5859	5.525378	GCATACCTGCTGCATATATAACCTC	59.475	44.000	1.31	0.00	45.32	3.85
2989	5860	5.431765	GCATACCTGCTGCATATATAACCT	58.568	41.667	1.31	0.00	45.32	3.50
3096	7757	1.304052	TTGCGGTCCTGGGGAATTG	60.304	57.895	0.00	0.00	31.38	2.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.