Multiple sequence alignment - TraesCS5D01G449900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G449900 chr5D 100.000 3700 0 0 2871 6570 498623510 498627209 0.000000e+00 6833
1 TraesCS5D01G449900 chr5D 100.000 2534 0 0 1 2534 498620640 498623173 0.000000e+00 4680
2 TraesCS5D01G449900 chr5A 94.058 2962 120 29 2871 5805 622987886 622990818 0.000000e+00 4444
3 TraesCS5D01G449900 chr5A 91.194 1147 54 10 1406 2534 622986738 622987855 0.000000e+00 1515
4 TraesCS5D01G449900 chr5A 82.597 770 119 12 1 760 514206823 514207587 0.000000e+00 665
5 TraesCS5D01G449900 chr5A 83.546 626 34 26 779 1379 622986063 622986644 7.550000e-144 521
6 TraesCS5D01G449900 chr5A 83.152 184 19 2 6046 6229 622991022 622991193 2.450000e-34 158
7 TraesCS5D01G449900 chr5B 96.804 2628 64 11 2872 5488 618121993 618124611 0.000000e+00 4370
8 TraesCS5D01G449900 chr5B 93.808 1292 54 11 1254 2534 618120693 618121969 0.000000e+00 1919
9 TraesCS5D01G449900 chr5B 87.640 534 26 15 5519 6041 618124614 618125118 9.490000e-163 584
10 TraesCS5D01G449900 chr5B 80.313 767 135 10 7 758 629901635 629900870 3.440000e-157 566
11 TraesCS5D01G449900 chr5B 88.728 346 26 4 806 1151 618120273 618120605 1.710000e-110 411
12 TraesCS5D01G449900 chr4D 88.687 2643 223 44 2887 5493 55067115 55064513 0.000000e+00 3155
13 TraesCS5D01G449900 chr4D 83.096 982 122 19 1572 2534 55068110 55067154 0.000000e+00 854
14 TraesCS5D01G449900 chr4D 95.349 129 6 0 1023 1151 55068315 55068187 8.640000e-49 206
15 TraesCS5D01G449900 chr6B 89.259 2430 203 35 3097 5494 551033306 551030903 0.000000e+00 2988
16 TraesCS5D01G449900 chr6B 82.246 552 69 18 1642 2184 551034724 551034193 3.610000e-122 449
17 TraesCS5D01G449900 chr6B 86.022 279 34 4 2257 2534 551033857 551033583 1.790000e-75 294
18 TraesCS5D01G449900 chr6B 88.688 221 21 3 2872 3091 551033562 551033345 3.910000e-67 267
19 TraesCS5D01G449900 chr6B 96.124 129 5 0 1023 1151 551034940 551034812 1.860000e-50 211
20 TraesCS5D01G449900 chr4A 90.387 1966 139 27 2887 4825 542021469 542023411 0.000000e+00 2538
21 TraesCS5D01G449900 chr4A 90.199 704 58 10 66 769 589116926 589116234 0.000000e+00 907
22 TraesCS5D01G449900 chr4A 83.227 942 110 25 1616 2534 542020514 542021430 0.000000e+00 821
23 TraesCS5D01G449900 chr4A 86.601 612 62 15 4898 5493 542023547 542024154 0.000000e+00 658
24 TraesCS5D01G449900 chr4A 94.574 129 7 0 1023 1151 542020312 542020440 4.020000e-47 200
25 TraesCS5D01G449900 chr4B 90.560 1822 139 21 2887 4680 82021061 82019245 0.000000e+00 2381
26 TraesCS5D01G449900 chr4B 83.721 903 106 18 1650 2534 82021979 82021100 0.000000e+00 815
27 TraesCS5D01G449900 chr4B 83.414 826 90 26 4677 5494 82019123 82018337 0.000000e+00 723
28 TraesCS5D01G449900 chr4B 96.124 129 5 0 1023 1151 82022213 82022085 1.860000e-50 211
29 TraesCS5D01G449900 chr1D 87.335 758 90 4 4 761 324748953 324748202 0.000000e+00 863
30 TraesCS5D01G449900 chr6A 83.377 770 113 12 1 760 13090058 13090822 0.000000e+00 699
31 TraesCS5D01G449900 chr6A 82.597 770 119 12 1 760 13087812 13088576 0.000000e+00 665
32 TraesCS5D01G449900 chr3A 83.442 767 110 13 1 757 51538078 51538837 0.000000e+00 697
33 TraesCS5D01G449900 chr6D 82.987 770 116 11 1 760 436328131 436327367 0.000000e+00 682
34 TraesCS5D01G449900 chrUn 82.682 768 121 9 1 759 48572889 48573653 0.000000e+00 671


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G449900 chr5D 498620640 498627209 6569 False 5756.50 6833 100.00000 1 6570 2 chr5D.!!$F1 6569
1 TraesCS5D01G449900 chr5A 622986063 622991193 5130 False 1659.50 4444 87.98750 779 6229 4 chr5A.!!$F2 5450
2 TraesCS5D01G449900 chr5A 514206823 514207587 764 False 665.00 665 82.59700 1 760 1 chr5A.!!$F1 759
3 TraesCS5D01G449900 chr5B 618120273 618125118 4845 False 1821.00 4370 91.74500 806 6041 4 chr5B.!!$F1 5235
4 TraesCS5D01G449900 chr5B 629900870 629901635 765 True 566.00 566 80.31300 7 758 1 chr5B.!!$R1 751
5 TraesCS5D01G449900 chr4D 55064513 55068315 3802 True 1405.00 3155 89.04400 1023 5493 3 chr4D.!!$R1 4470
6 TraesCS5D01G449900 chr6B 551030903 551034940 4037 True 841.80 2988 88.46780 1023 5494 5 chr6B.!!$R1 4471
7 TraesCS5D01G449900 chr4A 542020312 542024154 3842 False 1054.25 2538 88.69725 1023 5493 4 chr4A.!!$F1 4470
8 TraesCS5D01G449900 chr4A 589116234 589116926 692 True 907.00 907 90.19900 66 769 1 chr4A.!!$R1 703
9 TraesCS5D01G449900 chr4B 82018337 82022213 3876 True 1032.50 2381 88.45475 1023 5494 4 chr4B.!!$R1 4471
10 TraesCS5D01G449900 chr1D 324748202 324748953 751 True 863.00 863 87.33500 4 761 1 chr1D.!!$R1 757
11 TraesCS5D01G449900 chr6A 13087812 13090822 3010 False 682.00 699 82.98700 1 760 2 chr6A.!!$F1 759
12 TraesCS5D01G449900 chr3A 51538078 51538837 759 False 697.00 697 83.44200 1 757 1 chr3A.!!$F1 756
13 TraesCS5D01G449900 chr6D 436327367 436328131 764 True 682.00 682 82.98700 1 760 1 chr6D.!!$R1 759
14 TraesCS5D01G449900 chrUn 48572889 48573653 764 False 671.00 671 82.68200 1 759 1 chrUn.!!$F1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 2670 0.320160 GCGGGTCGTGTTTACCTTCT 60.320 55.000 0.00 0.0 37.18 2.85 F
1209 3525 0.179000 CGTCTCCTGCCCTATTTGCT 59.821 55.000 0.00 0.0 0.00 3.91 F
1884 4332 1.409427 ACCTACGGCTACTGCTTCATC 59.591 52.381 0.00 0.0 39.59 2.92 F
2297 5036 1.626686 ATGCCCGTCCAAATCAAACA 58.373 45.000 0.00 0.0 0.00 2.83 F
2940 5703 3.756434 ACTTGGGTGTTATATGTGTGTGC 59.244 43.478 0.00 0.0 0.00 4.57 F
3736 6540 5.652452 ACAACTTATTAGGTTGCCCTGAATC 59.348 40.000 16.14 0.0 45.34 2.52 F
5501 8540 0.179045 AGGAGTGAAAGCGCACAAGT 60.179 50.000 11.47 0.0 41.19 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 3608 0.108186 CACCACTAGAATCTGCGGCA 60.108 55.000 1.29 1.29 0.00 5.69 R
2870 5620 0.808125 ACAACATTGTGCGTGTGTGT 59.192 45.000 0.00 0.00 40.49 3.72 R
3764 6572 1.146152 TCCACCACCCCACCTTAAAAG 59.854 52.381 0.00 0.00 0.00 2.27 R
4118 6928 2.553602 CTGCCAGTACATTTTGCAGTCA 59.446 45.455 11.55 0.00 43.32 3.41 R
4436 7246 1.081892 CAGGAGACCAGAACAATGCG 58.918 55.000 0.00 0.00 0.00 4.73 R
5509 8548 0.034960 TCGGCAGCAGAGAGACTAGT 60.035 55.000 0.00 0.00 0.00 2.57 R
6431 9514 0.036952 CAGGGCACGAGTCACTGAAT 60.037 55.000 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.324331 GGTTTATTCACCAGAACCCTAGCT 60.324 45.833 0.00 0.00 36.39 3.32
178 179 2.211375 TCTGCGCCCAGACATACAT 58.789 52.632 4.18 0.00 42.98 2.29
190 191 4.825634 CCAGACATACATGCCATCAAAGAT 59.174 41.667 0.00 0.00 0.00 2.40
200 201 2.035576 GCCATCAAAGATGAAGGATGCC 59.964 50.000 8.49 0.00 45.33 4.40
214 215 1.077212 ATGCCGGATCTTGCTTGCT 60.077 52.632 5.05 0.00 0.00 3.91
282 283 5.066593 GTCCTCCATGAACAACTTTCTTCT 58.933 41.667 0.00 0.00 0.00 2.85
343 2590 0.970937 CCAGCCTCCCTGTACTTCGA 60.971 60.000 0.00 0.00 40.06 3.71
423 2670 0.320160 GCGGGTCGTGTTTACCTTCT 60.320 55.000 0.00 0.00 37.18 2.85
448 2695 0.745845 GCCAACCATCTCGCATCTGT 60.746 55.000 0.00 0.00 0.00 3.41
532 2780 0.403271 AGGTGCTGCAACATCTCCTT 59.597 50.000 21.23 0.00 0.00 3.36
646 2907 0.547075 CAGACGGTCCTCTCCTCCTA 59.453 60.000 4.14 0.00 0.00 2.94
715 2982 4.495422 GATCAGAAAAACTCTAGACGGCA 58.505 43.478 0.00 0.00 31.12 5.69
720 2987 3.695830 AAAACTCTAGACGGCAATGGA 57.304 42.857 0.00 0.00 0.00 3.41
745 3013 1.964373 GCGAGAGGCGAAAAACCCA 60.964 57.895 0.00 0.00 44.57 4.51
777 3045 5.541098 GGTACCTTTAGGATTTGTTGACG 57.459 43.478 4.06 0.00 38.94 4.35
781 3049 6.894339 ACCTTTAGGATTTGTTGACGAAAT 57.106 33.333 2.06 0.00 38.94 2.17
839 3107 1.069022 CACTGTCAGCCCATTTGTTCG 60.069 52.381 0.00 0.00 0.00 3.95
903 3174 3.313750 GCGCATAAGGTCGCTGAG 58.686 61.111 0.30 0.00 46.92 3.35
1006 3286 2.920384 CCCCCAAACCCAAACCCG 60.920 66.667 0.00 0.00 0.00 5.28
1163 3479 2.379972 CTCAGGTACGTCCTTCCAGAT 58.620 52.381 0.00 0.00 45.67 2.90
1164 3480 2.359531 CTCAGGTACGTCCTTCCAGATC 59.640 54.545 0.00 0.00 45.67 2.75
1166 3482 0.384669 GGTACGTCCTTCCAGATCCG 59.615 60.000 0.00 0.00 0.00 4.18
1182 3498 3.698463 CGTCCGTCACGTGGTTGC 61.698 66.667 17.00 3.12 44.07 4.17
1191 3507 2.176546 CGTGGTTGCTTGATGGCG 59.823 61.111 0.00 0.00 34.52 5.69
1192 3508 2.616330 CGTGGTTGCTTGATGGCGT 61.616 57.895 0.00 0.00 34.52 5.68
1193 3509 1.210155 GTGGTTGCTTGATGGCGTC 59.790 57.895 0.00 0.00 34.52 5.19
1194 3510 1.073025 TGGTTGCTTGATGGCGTCT 59.927 52.632 8.40 0.00 34.52 4.18
1195 3511 0.955428 TGGTTGCTTGATGGCGTCTC 60.955 55.000 8.40 0.00 34.52 3.36
1196 3512 1.648467 GGTTGCTTGATGGCGTCTCC 61.648 60.000 8.40 0.00 34.52 3.71
1207 3523 2.695314 GCGTCTCCTGCCCTATTTG 58.305 57.895 0.00 0.00 0.00 2.32
1208 3524 1.440145 GCGTCTCCTGCCCTATTTGC 61.440 60.000 0.00 0.00 0.00 3.68
1209 3525 0.179000 CGTCTCCTGCCCTATTTGCT 59.821 55.000 0.00 0.00 0.00 3.91
1271 3587 5.363939 CCTCCAGGATTGTTAGAATCTGTC 58.636 45.833 2.20 0.00 37.39 3.51
1384 3710 3.024547 GCTACTGACCCACTCTATGACA 58.975 50.000 0.00 0.00 0.00 3.58
1466 3881 4.598406 TTATTGTTGTGCTGCTGATACG 57.402 40.909 0.00 0.00 0.00 3.06
1476 3891 3.616821 TGCTGCTGATACGTTGTTACATC 59.383 43.478 0.00 0.00 0.00 3.06
1487 3902 8.766000 ATACGTTGTTACATCACACTAATCAA 57.234 30.769 0.00 0.00 0.00 2.57
1534 3949 8.690203 TCAAAGATCCAACATGTTTAAGAAGA 57.310 30.769 8.77 0.00 0.00 2.87
1535 3950 9.130661 TCAAAGATCCAACATGTTTAAGAAGAA 57.869 29.630 8.77 0.00 0.00 2.52
1536 3951 9.918630 CAAAGATCCAACATGTTTAAGAAGAAT 57.081 29.630 8.77 0.00 0.00 2.40
1537 3952 9.918630 AAAGATCCAACATGTTTAAGAAGAATG 57.081 29.630 8.77 0.00 0.00 2.67
1538 3953 8.868522 AGATCCAACATGTTTAAGAAGAATGA 57.131 30.769 8.77 0.00 0.00 2.57
1539 3954 8.734386 AGATCCAACATGTTTAAGAAGAATGAC 58.266 33.333 8.77 0.00 0.00 3.06
1540 3955 8.641498 ATCCAACATGTTTAAGAAGAATGACT 57.359 30.769 8.77 0.00 0.00 3.41
1541 3956 9.739276 ATCCAACATGTTTAAGAAGAATGACTA 57.261 29.630 8.77 0.00 0.00 2.59
1542 3957 9.739276 TCCAACATGTTTAAGAAGAATGACTAT 57.261 29.630 8.77 0.00 0.00 2.12
1593 4034 6.272822 GGGGGCATCTTCACATTATTTATC 57.727 41.667 0.00 0.00 0.00 1.75
1640 4087 9.048446 GTATTTCTTGACTTTGTTACCTGTGTA 57.952 33.333 0.00 0.00 0.00 2.90
1641 4088 7.925043 TTTCTTGACTTTGTTACCTGTGTAA 57.075 32.000 0.00 0.00 34.60 2.41
1642 4089 8.514330 TTTCTTGACTTTGTTACCTGTGTAAT 57.486 30.769 0.00 0.00 39.08 1.89
1827 4275 4.525912 AATTGGTGTCATCAAAGAAGGC 57.474 40.909 1.88 0.00 0.00 4.35
1884 4332 1.409427 ACCTACGGCTACTGCTTCATC 59.591 52.381 0.00 0.00 39.59 2.92
1962 4416 5.698104 TCTGCATGATGGAATGAGGTAATT 58.302 37.500 0.00 0.00 0.00 1.40
1963 4417 6.840527 TCTGCATGATGGAATGAGGTAATTA 58.159 36.000 0.00 0.00 0.00 1.40
1964 4418 7.289310 TCTGCATGATGGAATGAGGTAATTAA 58.711 34.615 0.00 0.00 0.00 1.40
1965 4419 7.946219 TCTGCATGATGGAATGAGGTAATTAAT 59.054 33.333 0.00 0.00 0.00 1.40
1974 4428 9.077885 TGGAATGAGGTAATTAATGCCTTAATC 57.922 33.333 11.70 10.26 45.25 1.75
2006 4460 2.629137 TGCAAGTCATGTGCATTCCTTT 59.371 40.909 5.43 0.00 46.76 3.11
2035 4489 5.728637 AAAGGTCATCCCAGTTTCATTTC 57.271 39.130 0.00 0.00 34.66 2.17
2062 4516 3.207778 TCTACCCTGGTTCACGTTTTTG 58.792 45.455 0.00 0.00 0.00 2.44
2271 5010 7.552330 AGTGTTTTGCAGTTATGACCAAATTTT 59.448 29.630 0.00 0.00 0.00 1.82
2297 5036 1.626686 ATGCCCGTCCAAATCAAACA 58.373 45.000 0.00 0.00 0.00 2.83
2897 5660 5.458452 CACACGCACAATGTTGTTTCTTTAT 59.542 36.000 0.00 0.00 39.91 1.40
2940 5703 3.756434 ACTTGGGTGTTATATGTGTGTGC 59.244 43.478 0.00 0.00 0.00 4.57
3736 6540 5.652452 ACAACTTATTAGGTTGCCCTGAATC 59.348 40.000 16.14 0.00 45.34 2.52
4011 6821 7.784470 ACAGTTACCTCTTCTAAGATGTTCT 57.216 36.000 6.05 3.91 35.81 3.01
4118 6928 6.330278 GCAGAAAAACCTTTTCAGTGTTAGT 58.670 36.000 12.91 0.00 0.00 2.24
4599 7409 1.853963 TCCTACTGGAAGGTGAGCTC 58.146 55.000 6.82 6.82 39.87 4.09
4750 7698 1.407979 GGCTCAGCTGAAATTGATGGG 59.592 52.381 18.85 3.60 0.00 4.00
4752 7700 2.358267 GCTCAGCTGAAATTGATGGGAG 59.642 50.000 18.85 2.27 0.00 4.30
4758 7709 4.643784 AGCTGAAATTGATGGGAGCTTTAG 59.356 41.667 0.00 0.00 32.93 1.85
4868 7825 7.350744 TCCATGGATTGATTTCCTTGTAATG 57.649 36.000 11.44 0.00 38.60 1.90
4905 7925 8.650143 AAATAGAATGTGTTCCATTTACCACT 57.350 30.769 0.00 0.00 43.87 4.00
4906 7926 5.964958 AGAATGTGTTCCATTTACCACTG 57.035 39.130 0.00 0.00 43.87 3.66
4953 7973 1.460743 TGCTTGTTCAGATTTCTCGCG 59.539 47.619 0.00 0.00 0.00 5.87
5063 8083 5.265191 TCACTTCTATCAGGTAGAGCTTGT 58.735 41.667 0.00 0.00 40.42 3.16
5086 8115 6.098124 TGTGTCCATCCTTTGTTCTTTGAATT 59.902 34.615 0.00 0.00 0.00 2.17
5159 8198 3.814268 CAGTTCCAATGGCGCCCG 61.814 66.667 26.77 12.64 0.00 6.13
5357 8396 3.753434 CTGCACGAGGAGGAGCGT 61.753 66.667 0.00 0.00 42.11 5.07
5364 8403 1.068250 GAGGAGGAGCGTGCATACC 59.932 63.158 0.00 0.00 0.00 2.73
5477 8516 4.590850 AGAAATTGTTGCCTTTGACCTC 57.409 40.909 0.00 0.00 0.00 3.85
5494 8533 0.734253 CTCGACCAGGAGTGAAAGCG 60.734 60.000 0.00 0.00 0.00 4.68
5501 8540 0.179045 AGGAGTGAAAGCGCACAAGT 60.179 50.000 11.47 0.00 41.19 3.16
5502 8541 0.235926 GGAGTGAAAGCGCACAAGTC 59.764 55.000 11.47 4.40 41.19 3.01
5503 8542 1.221414 GAGTGAAAGCGCACAAGTCT 58.779 50.000 11.47 0.00 41.19 3.24
5509 8548 3.254060 GAAAGCGCACAAGTCTCTCATA 58.746 45.455 11.47 0.00 0.00 2.15
5547 8586 2.666619 CGAGTGTTCATTTTCTGCCTGC 60.667 50.000 0.00 0.00 0.00 4.85
5550 8589 0.881118 GTTCATTTTCTGCCTGCCGA 59.119 50.000 0.00 0.00 0.00 5.54
5597 8644 4.419522 ACGTGCAAGTGGATAATTTGTC 57.580 40.909 3.91 0.00 0.00 3.18
5599 8646 3.120338 CGTGCAAGTGGATAATTTGTCGT 60.120 43.478 0.00 0.00 0.00 4.34
5699 8755 8.149647 ACCATCATAATCTGTTTCTTTGCAAAA 58.850 29.630 13.84 1.75 0.00 2.44
5700 8756 8.991026 CCATCATAATCTGTTTCTTTGCAAAAA 58.009 29.630 13.84 7.86 0.00 1.94
5710 8766 7.457060 TGTTTCTTTGCAAAAACGGTTATTTC 58.543 30.769 13.84 0.00 38.03 2.17
5760 8816 9.778993 CTGTGATATCGAAATTGTCTGAAAAAT 57.221 29.630 0.00 0.00 0.00 1.82
5785 8841 1.140312 TCTTCCTGGTGTTTGAGCCT 58.860 50.000 0.00 0.00 0.00 4.58
5790 8846 2.038557 TCCTGGTGTTTGAGCCTAGTTC 59.961 50.000 0.00 0.00 0.00 3.01
5793 8849 2.438021 TGGTGTTTGAGCCTAGTTCTGT 59.562 45.455 0.00 0.00 0.00 3.41
5797 8853 4.024809 GTGTTTGAGCCTAGTTCTGTTGTC 60.025 45.833 0.00 0.00 0.00 3.18
5801 8857 3.327757 TGAGCCTAGTTCTGTTGTCCAAT 59.672 43.478 0.00 0.00 0.00 3.16
5805 8861 4.631813 GCCTAGTTCTGTTGTCCAATACTG 59.368 45.833 0.00 0.00 0.00 2.74
5806 8862 5.794894 CCTAGTTCTGTTGTCCAATACTGT 58.205 41.667 0.00 0.00 0.00 3.55
5808 8864 6.812160 CCTAGTTCTGTTGTCCAATACTGTAC 59.188 42.308 0.00 0.00 0.00 2.90
5809 8865 6.420913 AGTTCTGTTGTCCAATACTGTACT 57.579 37.500 0.00 0.00 0.00 2.73
5810 8866 7.534723 AGTTCTGTTGTCCAATACTGTACTA 57.465 36.000 0.00 0.00 0.00 1.82
5811 8867 7.959175 AGTTCTGTTGTCCAATACTGTACTAA 58.041 34.615 0.00 0.00 0.00 2.24
5812 8868 8.594550 AGTTCTGTTGTCCAATACTGTACTAAT 58.405 33.333 0.00 0.00 0.00 1.73
5813 8869 8.656849 GTTCTGTTGTCCAATACTGTACTAATG 58.343 37.037 0.00 0.00 0.00 1.90
5814 8870 7.903145 TCTGTTGTCCAATACTGTACTAATGT 58.097 34.615 0.00 0.00 0.00 2.71
5815 8871 9.027202 TCTGTTGTCCAATACTGTACTAATGTA 57.973 33.333 0.00 0.00 0.00 2.29
5816 8872 8.991243 TGTTGTCCAATACTGTACTAATGTAC 57.009 34.615 0.00 0.00 46.74 2.90
5859 8922 2.413837 ACATTGTGTTACGTCAGGAGC 58.586 47.619 0.00 0.00 0.00 4.70
5861 8924 0.034337 TTGTGTTACGTCAGGAGCCC 59.966 55.000 0.00 0.00 0.00 5.19
5862 8925 1.116536 TGTGTTACGTCAGGAGCCCA 61.117 55.000 0.00 0.00 0.00 5.36
5867 8930 0.824109 TACGTCAGGAGCCCATCTTG 59.176 55.000 0.00 0.00 36.37 3.02
5936 9007 1.686587 CAAAACCTCCCACCCAACTTC 59.313 52.381 0.00 0.00 0.00 3.01
5954 9026 1.846007 TCGGCATTTTGGCAAGGTAT 58.154 45.000 0.00 0.00 43.94 2.73
5956 9028 3.357203 TCGGCATTTTGGCAAGGTATAA 58.643 40.909 0.00 0.00 43.94 0.98
5958 9030 3.862845 CGGCATTTTGGCAAGGTATAAAC 59.137 43.478 0.00 0.00 43.94 2.01
5961 9033 5.294060 GGCATTTTGGCAAGGTATAAACATG 59.706 40.000 0.00 0.00 43.14 3.21
5962 9034 6.105333 GCATTTTGGCAAGGTATAAACATGA 58.895 36.000 0.00 0.00 0.00 3.07
5964 9036 7.042523 GCATTTTGGCAAGGTATAAACATGATC 60.043 37.037 0.00 0.00 0.00 2.92
5965 9037 7.473735 TTTTGGCAAGGTATAAACATGATCA 57.526 32.000 0.00 0.00 0.00 2.92
5966 9038 7.473735 TTTGGCAAGGTATAAACATGATCAA 57.526 32.000 0.00 0.00 0.00 2.57
6023 9106 0.953727 GTCAACATCAAGTGGCAGCA 59.046 50.000 0.00 0.00 0.00 4.41
6041 9124 1.981254 CAATTACAGCCAAACGCAGG 58.019 50.000 0.00 0.00 41.38 4.85
6042 9125 1.269448 CAATTACAGCCAAACGCAGGT 59.731 47.619 0.00 0.00 41.38 4.00
6043 9126 2.483014 ATTACAGCCAAACGCAGGTA 57.517 45.000 0.00 0.00 41.38 3.08
6044 9127 2.483014 TTACAGCCAAACGCAGGTAT 57.517 45.000 0.00 0.00 41.38 2.73
6045 9128 1.732941 TACAGCCAAACGCAGGTATG 58.267 50.000 0.00 0.00 41.38 2.39
6070 9153 7.094592 TGCCACGAACAAATCATAAGTATTGAA 60.095 33.333 0.00 0.00 0.00 2.69
6077 9160 9.825972 AACAAATCATAAGTATTGAACGACTTG 57.174 29.630 4.95 0.00 36.58 3.16
6080 9163 9.661563 AAATCATAAGTATTGAACGACTTGGTA 57.338 29.630 4.95 0.00 36.58 3.25
6125 9208 7.500227 TCCATTTGAAATAAGCAGAGGACATAG 59.500 37.037 0.00 0.00 0.00 2.23
6126 9209 7.255381 CCATTTGAAATAAGCAGAGGACATAGG 60.255 40.741 0.00 0.00 0.00 2.57
6127 9210 6.560003 TTGAAATAAGCAGAGGACATAGGA 57.440 37.500 0.00 0.00 0.00 2.94
6128 9211 6.560003 TGAAATAAGCAGAGGACATAGGAA 57.440 37.500 0.00 0.00 0.00 3.36
6129 9212 6.957631 TGAAATAAGCAGAGGACATAGGAAA 58.042 36.000 0.00 0.00 0.00 3.13
6130 9213 6.823689 TGAAATAAGCAGAGGACATAGGAAAC 59.176 38.462 0.00 0.00 0.00 2.78
6131 9214 3.636153 AAGCAGAGGACATAGGAAACC 57.364 47.619 0.00 0.00 0.00 3.27
6132 9215 1.482593 AGCAGAGGACATAGGAAACCG 59.517 52.381 0.00 0.00 0.00 4.44
6133 9216 1.207329 GCAGAGGACATAGGAAACCGT 59.793 52.381 0.00 0.00 0.00 4.83
6134 9217 2.354805 GCAGAGGACATAGGAAACCGTT 60.355 50.000 0.00 0.00 0.00 4.44
6151 9234 9.159364 GGAAACCGTTAGAAGATACTACAAAAT 57.841 33.333 0.00 0.00 0.00 1.82
6198 9281 2.894387 GCCCGAGCTCATCTGCAC 60.894 66.667 15.40 0.00 35.50 4.57
6200 9283 2.584418 CCGAGCTCATCTGCACCG 60.584 66.667 15.40 0.00 34.99 4.94
6202 9285 1.433471 CGAGCTCATCTGCACCGTA 59.567 57.895 15.40 0.00 34.99 4.02
6214 9297 4.827692 TCTGCACCGTATGAACAGTAAAT 58.172 39.130 0.00 0.00 0.00 1.40
6218 9301 7.388224 TCTGCACCGTATGAACAGTAAATTAAA 59.612 33.333 0.00 0.00 0.00 1.52
6221 9304 9.349145 GCACCGTATGAACAGTAAATTAAAAAT 57.651 29.630 0.00 0.00 0.00 1.82
6254 9337 9.836864 ATCATACTTTAGTGATAAACTGCATCA 57.163 29.630 0.00 0.00 40.26 3.07
6255 9338 9.665719 TCATACTTTAGTGATAAACTGCATCAA 57.334 29.630 0.00 0.00 40.26 2.57
6263 9346 8.297470 AGTGATAAACTGCATCAATATTTGGT 57.703 30.769 0.00 0.00 37.88 3.67
6264 9347 8.408601 AGTGATAAACTGCATCAATATTTGGTC 58.591 33.333 0.00 0.00 37.88 4.02
6265 9348 7.649306 GTGATAAACTGCATCAATATTTGGTCC 59.351 37.037 0.00 0.00 34.32 4.46
6266 9349 7.560991 TGATAAACTGCATCAATATTTGGTCCT 59.439 33.333 0.00 0.00 29.55 3.85
6267 9350 8.995027 ATAAACTGCATCAATATTTGGTCCTA 57.005 30.769 0.00 0.00 0.00 2.94
6268 9351 6.699575 AACTGCATCAATATTTGGTCCTAC 57.300 37.500 0.00 0.00 0.00 3.18
6269 9352 4.816385 ACTGCATCAATATTTGGTCCTACG 59.184 41.667 0.00 0.00 0.00 3.51
6270 9353 3.563808 TGCATCAATATTTGGTCCTACGC 59.436 43.478 0.00 0.00 0.00 4.42
6271 9354 3.363970 GCATCAATATTTGGTCCTACGCG 60.364 47.826 3.53 3.53 0.00 6.01
6272 9355 3.530265 TCAATATTTGGTCCTACGCGT 57.470 42.857 19.17 19.17 0.00 6.01
6273 9356 4.652421 TCAATATTTGGTCCTACGCGTA 57.348 40.909 19.40 19.40 0.00 4.42
6274 9357 5.204409 TCAATATTTGGTCCTACGCGTAT 57.796 39.130 20.91 5.72 0.00 3.06
6275 9358 6.330004 TCAATATTTGGTCCTACGCGTATA 57.670 37.500 20.91 8.01 0.00 1.47
6276 9359 6.747125 TCAATATTTGGTCCTACGCGTATAA 58.253 36.000 20.91 8.06 0.00 0.98
6277 9360 6.642131 TCAATATTTGGTCCTACGCGTATAAC 59.358 38.462 20.91 19.13 0.00 1.89
6278 9361 2.869233 TTGGTCCTACGCGTATAACC 57.131 50.000 29.45 29.45 0.00 2.85
6279 9362 2.057137 TGGTCCTACGCGTATAACCT 57.943 50.000 32.69 9.48 0.00 3.50
6280 9363 3.207265 TGGTCCTACGCGTATAACCTA 57.793 47.619 32.69 22.99 0.00 3.08
6281 9364 3.754965 TGGTCCTACGCGTATAACCTAT 58.245 45.455 32.69 8.20 0.00 2.57
6282 9365 4.144297 TGGTCCTACGCGTATAACCTATT 58.856 43.478 32.69 7.56 0.00 1.73
6283 9366 5.312895 TGGTCCTACGCGTATAACCTATTA 58.687 41.667 32.69 19.88 0.00 0.98
6284 9367 5.181245 TGGTCCTACGCGTATAACCTATTAC 59.819 44.000 32.69 17.17 0.00 1.89
6285 9368 5.181245 GGTCCTACGCGTATAACCTATTACA 59.819 44.000 29.12 6.22 0.00 2.41
6286 9369 6.293955 GGTCCTACGCGTATAACCTATTACAA 60.294 42.308 29.12 5.84 0.00 2.41
6287 9370 7.138736 GTCCTACGCGTATAACCTATTACAAA 58.861 38.462 20.91 0.00 0.00 2.83
6288 9371 7.113544 GTCCTACGCGTATAACCTATTACAAAC 59.886 40.741 20.91 0.00 0.00 2.93
6289 9372 6.363357 CCTACGCGTATAACCTATTACAAACC 59.637 42.308 20.91 0.00 0.00 3.27
6290 9373 4.739716 ACGCGTATAACCTATTACAAACCG 59.260 41.667 11.67 0.00 0.00 4.44
6291 9374 4.148696 CGCGTATAACCTATTACAAACCGG 59.851 45.833 0.00 0.00 0.00 5.28
6292 9375 5.049828 GCGTATAACCTATTACAAACCGGT 58.950 41.667 0.00 0.00 0.00 5.28
6293 9376 5.050837 GCGTATAACCTATTACAAACCGGTG 60.051 44.000 8.52 0.00 0.00 4.94
6294 9377 5.463061 CGTATAACCTATTACAAACCGGTGG 59.537 44.000 8.52 6.38 0.00 4.61
6295 9378 3.793819 AACCTATTACAAACCGGTGGT 57.206 42.857 8.52 13.09 37.65 4.16
6296 9379 4.906747 AACCTATTACAAACCGGTGGTA 57.093 40.909 8.52 11.90 33.12 3.25
6297 9380 4.206477 ACCTATTACAAACCGGTGGTAC 57.794 45.455 8.52 0.00 33.12 3.34
6298 9381 3.055167 ACCTATTACAAACCGGTGGTACC 60.055 47.826 8.52 4.43 33.12 3.34
6299 9382 3.055240 CCTATTACAAACCGGTGGTACCA 60.055 47.826 11.60 11.60 38.47 3.25
6300 9383 3.505480 ATTACAAACCGGTGGTACCAA 57.495 42.857 18.31 1.64 38.47 3.67
6301 9384 3.287867 TTACAAACCGGTGGTACCAAA 57.712 42.857 18.31 0.31 38.47 3.28
6302 9385 2.140839 ACAAACCGGTGGTACCAAAA 57.859 45.000 18.31 0.00 38.47 2.44
6303 9386 2.454538 ACAAACCGGTGGTACCAAAAA 58.545 42.857 18.31 0.00 38.47 1.94
6327 9410 9.914131 AAAACCTTTTCTAAAAGTATCAGCATC 57.086 29.630 12.80 0.00 42.92 3.91
6328 9411 8.635765 AACCTTTTCTAAAAGTATCAGCATCA 57.364 30.769 12.80 0.00 42.92 3.07
6329 9412 8.273780 ACCTTTTCTAAAAGTATCAGCATCAG 57.726 34.615 12.80 0.00 42.92 2.90
6330 9413 7.148171 ACCTTTTCTAAAAGTATCAGCATCAGC 60.148 37.037 12.80 0.00 42.92 4.26
6331 9414 7.148188 CCTTTTCTAAAAGTATCAGCATCAGCA 60.148 37.037 12.80 0.00 42.92 4.41
6332 9415 7.870509 TTTCTAAAAGTATCAGCATCAGCAT 57.129 32.000 0.00 0.00 45.49 3.79
6333 9416 7.488187 TTCTAAAAGTATCAGCATCAGCATC 57.512 36.000 0.00 0.00 45.49 3.91
6334 9417 6.585416 TCTAAAAGTATCAGCATCAGCATCA 58.415 36.000 0.00 0.00 45.49 3.07
6335 9418 5.752892 AAAAGTATCAGCATCAGCATCAG 57.247 39.130 0.00 0.00 45.49 2.90
6336 9419 2.768698 AGTATCAGCATCAGCATCAGC 58.231 47.619 0.00 0.00 45.49 4.26
6337 9420 2.104281 AGTATCAGCATCAGCATCAGCA 59.896 45.455 0.00 0.00 45.49 4.41
6338 9421 2.278332 ATCAGCATCAGCATCAGCAT 57.722 45.000 0.00 0.00 45.49 3.79
6339 9422 1.594331 TCAGCATCAGCATCAGCATC 58.406 50.000 0.00 0.00 45.49 3.91
6340 9423 1.141053 TCAGCATCAGCATCAGCATCT 59.859 47.619 0.00 0.00 45.49 2.90
6341 9424 1.265365 CAGCATCAGCATCAGCATCTG 59.735 52.381 0.00 0.00 45.49 2.90
6342 9425 1.134068 AGCATCAGCATCAGCATCTGT 60.134 47.619 0.00 0.00 45.49 3.41
6343 9426 1.676529 GCATCAGCATCAGCATCTGTT 59.323 47.619 0.00 0.00 45.49 3.16
6344 9427 2.287069 GCATCAGCATCAGCATCTGTTC 60.287 50.000 0.00 0.00 45.49 3.18
6345 9428 3.206964 CATCAGCATCAGCATCTGTTCT 58.793 45.455 0.00 0.00 45.49 3.01
6346 9429 2.629051 TCAGCATCAGCATCTGTTCTG 58.371 47.619 0.00 1.51 45.49 3.02
6347 9430 1.064208 CAGCATCAGCATCTGTTCTGC 59.936 52.381 9.18 9.18 45.49 4.26
6358 9441 6.609237 GCATCTGTTCTGCTGATATTTACA 57.391 37.500 0.00 0.00 36.68 2.41
6359 9442 6.425504 GCATCTGTTCTGCTGATATTTACAC 58.574 40.000 0.00 0.00 36.68 2.90
6360 9443 6.037500 GCATCTGTTCTGCTGATATTTACACA 59.962 38.462 0.00 0.00 36.68 3.72
6361 9444 7.414429 GCATCTGTTCTGCTGATATTTACACAA 60.414 37.037 0.00 0.00 36.68 3.33
6362 9445 7.601073 TCTGTTCTGCTGATATTTACACAAG 57.399 36.000 0.00 0.00 0.00 3.16
6363 9446 6.595326 TCTGTTCTGCTGATATTTACACAAGG 59.405 38.462 0.00 0.00 0.00 3.61
6364 9447 5.647658 TGTTCTGCTGATATTTACACAAGGG 59.352 40.000 0.00 0.00 0.00 3.95
6365 9448 4.780815 TCTGCTGATATTTACACAAGGGG 58.219 43.478 0.00 0.00 0.00 4.79
6366 9449 4.227300 TCTGCTGATATTTACACAAGGGGT 59.773 41.667 0.00 0.00 0.00 4.95
6367 9450 4.929479 TGCTGATATTTACACAAGGGGTT 58.071 39.130 0.00 0.00 0.00 4.11
6368 9451 4.947388 TGCTGATATTTACACAAGGGGTTC 59.053 41.667 0.00 0.00 0.00 3.62
6369 9452 4.947388 GCTGATATTTACACAAGGGGTTCA 59.053 41.667 0.00 0.00 0.00 3.18
6370 9453 5.594317 GCTGATATTTACACAAGGGGTTCAT 59.406 40.000 0.00 0.00 0.00 2.57
6371 9454 6.460123 GCTGATATTTACACAAGGGGTTCATG 60.460 42.308 0.00 0.00 0.00 3.07
6372 9455 5.890985 TGATATTTACACAAGGGGTTCATGG 59.109 40.000 0.00 0.00 0.00 3.66
6373 9456 1.917872 TTACACAAGGGGTTCATGGC 58.082 50.000 0.00 0.00 0.00 4.40
6374 9457 0.322098 TACACAAGGGGTTCATGGCG 60.322 55.000 0.00 0.00 0.00 5.69
6375 9458 2.676471 ACAAGGGGTTCATGGCGC 60.676 61.111 0.00 0.00 0.00 6.53
6376 9459 3.451894 CAAGGGGTTCATGGCGCC 61.452 66.667 22.73 22.73 38.99 6.53
6377 9460 3.978193 AAGGGGTTCATGGCGCCA 61.978 61.111 34.80 34.80 40.86 5.69
6378 9461 3.944250 AAGGGGTTCATGGCGCCAG 62.944 63.158 35.36 25.00 40.86 4.85
6403 9486 4.129737 GTGCGGTCGCCTCTAGCA 62.130 66.667 12.94 0.00 44.04 3.49
6404 9487 4.129737 TGCGGTCGCCTCTAGCAC 62.130 66.667 12.94 0.00 44.04 4.40
6405 9488 4.874977 GCGGTCGCCTCTAGCACC 62.875 72.222 3.73 0.00 44.04 5.01
6406 9489 3.449227 CGGTCGCCTCTAGCACCA 61.449 66.667 0.00 0.00 44.04 4.17
6407 9490 2.496817 GGTCGCCTCTAGCACCAG 59.503 66.667 0.00 0.00 44.04 4.00
6408 9491 2.496817 GTCGCCTCTAGCACCAGG 59.503 66.667 0.00 0.00 44.04 4.45
6409 9492 2.759973 TCGCCTCTAGCACCAGGG 60.760 66.667 0.00 0.00 44.04 4.45
6410 9493 4.537433 CGCCTCTAGCACCAGGGC 62.537 72.222 0.00 0.00 44.04 5.19
6411 9494 3.402681 GCCTCTAGCACCAGGGCA 61.403 66.667 0.00 0.00 42.97 5.36
6412 9495 2.906458 CCTCTAGCACCAGGGCAG 59.094 66.667 0.00 0.00 35.83 4.85
6413 9496 2.188994 CTCTAGCACCAGGGCAGC 59.811 66.667 0.00 0.00 35.83 5.25
6414 9497 2.607442 TCTAGCACCAGGGCAGCA 60.607 61.111 0.00 0.00 35.83 4.41
6415 9498 1.980784 CTCTAGCACCAGGGCAGCAT 61.981 60.000 0.00 0.00 35.83 3.79
6416 9499 0.690744 TCTAGCACCAGGGCAGCATA 60.691 55.000 0.00 0.00 35.83 3.14
6417 9500 0.399454 CTAGCACCAGGGCAGCATAT 59.601 55.000 0.00 0.00 35.83 1.78
6418 9501 0.846015 TAGCACCAGGGCAGCATATT 59.154 50.000 0.00 0.00 35.83 1.28
6419 9502 0.754217 AGCACCAGGGCAGCATATTG 60.754 55.000 0.00 0.00 35.83 1.90
6420 9503 1.039233 GCACCAGGGCAGCATATTGT 61.039 55.000 0.00 0.00 0.00 2.71
6421 9504 0.742505 CACCAGGGCAGCATATTGTG 59.257 55.000 0.00 0.00 0.00 3.33
6422 9505 0.396139 ACCAGGGCAGCATATTGTGG 60.396 55.000 0.00 0.00 0.00 4.17
6423 9506 0.106569 CCAGGGCAGCATATTGTGGA 60.107 55.000 0.00 0.00 0.00 4.02
6424 9507 1.479942 CCAGGGCAGCATATTGTGGAT 60.480 52.381 0.00 0.00 0.00 3.41
6425 9508 1.611977 CAGGGCAGCATATTGTGGATG 59.388 52.381 0.00 0.00 0.00 3.51
6435 9518 6.075762 GCATATTGTGGATGCTACAATTCA 57.924 37.500 13.10 0.00 44.04 2.57
6436 9519 6.147581 GCATATTGTGGATGCTACAATTCAG 58.852 40.000 13.10 6.45 44.04 3.02
6437 9520 6.238842 GCATATTGTGGATGCTACAATTCAGT 60.239 38.462 13.10 0.00 44.04 3.41
6438 9521 5.571784 ATTGTGGATGCTACAATTCAGTG 57.428 39.130 3.71 0.00 44.04 3.66
6439 9522 4.284829 TGTGGATGCTACAATTCAGTGA 57.715 40.909 0.00 0.00 0.00 3.41
6440 9523 4.002982 TGTGGATGCTACAATTCAGTGAC 58.997 43.478 0.00 0.00 0.00 3.67
6441 9524 4.256920 GTGGATGCTACAATTCAGTGACT 58.743 43.478 0.00 0.00 0.00 3.41
6442 9525 4.331168 GTGGATGCTACAATTCAGTGACTC 59.669 45.833 0.00 0.00 0.00 3.36
6443 9526 3.553511 GGATGCTACAATTCAGTGACTCG 59.446 47.826 0.00 0.00 0.00 4.18
6444 9527 3.660501 TGCTACAATTCAGTGACTCGT 57.339 42.857 0.00 0.00 0.00 4.18
6445 9528 3.317150 TGCTACAATTCAGTGACTCGTG 58.683 45.455 0.00 0.00 0.00 4.35
6446 9529 2.092838 GCTACAATTCAGTGACTCGTGC 59.907 50.000 0.00 0.00 0.00 5.34
6447 9530 1.512926 ACAATTCAGTGACTCGTGCC 58.487 50.000 0.00 0.00 0.00 5.01
6448 9531 0.798776 CAATTCAGTGACTCGTGCCC 59.201 55.000 0.00 0.00 0.00 5.36
6449 9532 0.687354 AATTCAGTGACTCGTGCCCT 59.313 50.000 0.00 0.00 0.00 5.19
6450 9533 0.036952 ATTCAGTGACTCGTGCCCTG 60.037 55.000 0.00 0.00 0.00 4.45
6451 9534 1.112916 TTCAGTGACTCGTGCCCTGA 61.113 55.000 0.00 0.00 0.00 3.86
6452 9535 1.112916 TCAGTGACTCGTGCCCTGAA 61.113 55.000 0.00 0.00 0.00 3.02
6453 9536 0.036952 CAGTGACTCGTGCCCTGAAT 60.037 55.000 0.00 0.00 0.00 2.57
6454 9537 0.687354 AGTGACTCGTGCCCTGAATT 59.313 50.000 0.00 0.00 0.00 2.17
6455 9538 0.798776 GTGACTCGTGCCCTGAATTG 59.201 55.000 0.00 0.00 0.00 2.32
6456 9539 0.396435 TGACTCGTGCCCTGAATTGT 59.604 50.000 0.00 0.00 0.00 2.71
6457 9540 1.621317 TGACTCGTGCCCTGAATTGTA 59.379 47.619 0.00 0.00 0.00 2.41
6458 9541 2.271800 GACTCGTGCCCTGAATTGTAG 58.728 52.381 0.00 0.00 0.00 2.74
6459 9542 1.066143 ACTCGTGCCCTGAATTGTAGG 60.066 52.381 0.00 0.00 35.01 3.18
6460 9543 0.981183 TCGTGCCCTGAATTGTAGGT 59.019 50.000 5.00 0.00 33.31 3.08
6461 9544 1.086696 CGTGCCCTGAATTGTAGGTG 58.913 55.000 5.00 0.00 33.31 4.00
6462 9545 1.338674 CGTGCCCTGAATTGTAGGTGA 60.339 52.381 5.00 0.00 33.31 4.02
6463 9546 2.359900 GTGCCCTGAATTGTAGGTGAG 58.640 52.381 5.00 0.00 33.31 3.51
6464 9547 2.027192 GTGCCCTGAATTGTAGGTGAGA 60.027 50.000 5.00 0.00 33.31 3.27
6465 9548 2.027192 TGCCCTGAATTGTAGGTGAGAC 60.027 50.000 5.00 0.00 33.31 3.36
6466 9549 2.027192 GCCCTGAATTGTAGGTGAGACA 60.027 50.000 5.00 0.00 33.31 3.41
6467 9550 3.370953 GCCCTGAATTGTAGGTGAGACAT 60.371 47.826 5.00 0.00 33.31 3.06
6468 9551 4.141711 GCCCTGAATTGTAGGTGAGACATA 60.142 45.833 5.00 0.00 33.31 2.29
6469 9552 5.629133 GCCCTGAATTGTAGGTGAGACATAA 60.629 44.000 5.00 0.00 33.31 1.90
6470 9553 6.051717 CCCTGAATTGTAGGTGAGACATAAG 58.948 44.000 5.00 0.00 33.31 1.73
6471 9554 5.525378 CCTGAATTGTAGGTGAGACATAAGC 59.475 44.000 0.00 0.00 0.00 3.09
6472 9555 5.109210 TGAATTGTAGGTGAGACATAAGCG 58.891 41.667 0.00 0.00 0.00 4.68
6473 9556 3.520290 TTGTAGGTGAGACATAAGCGG 57.480 47.619 0.00 0.00 0.00 5.52
6474 9557 2.453521 TGTAGGTGAGACATAAGCGGT 58.546 47.619 0.00 0.00 0.00 5.68
6475 9558 3.623703 TGTAGGTGAGACATAAGCGGTA 58.376 45.455 0.00 0.00 0.00 4.02
6476 9559 4.212716 TGTAGGTGAGACATAAGCGGTAT 58.787 43.478 0.00 0.00 0.00 2.73
6477 9560 4.277672 TGTAGGTGAGACATAAGCGGTATC 59.722 45.833 0.00 0.00 0.00 2.24
6478 9561 3.567397 AGGTGAGACATAAGCGGTATCT 58.433 45.455 0.00 0.00 0.00 1.98
6479 9562 3.961408 AGGTGAGACATAAGCGGTATCTT 59.039 43.478 0.00 0.00 0.00 2.40
6480 9563 4.051922 GGTGAGACATAAGCGGTATCTTG 58.948 47.826 0.00 0.00 0.00 3.02
6481 9564 4.202121 GGTGAGACATAAGCGGTATCTTGA 60.202 45.833 0.00 0.00 0.00 3.02
6482 9565 5.509840 GGTGAGACATAAGCGGTATCTTGAT 60.510 44.000 0.00 0.00 0.00 2.57
6483 9566 5.403766 GTGAGACATAAGCGGTATCTTGATG 59.596 44.000 0.00 0.00 0.00 3.07
6484 9567 4.887748 AGACATAAGCGGTATCTTGATGG 58.112 43.478 0.00 0.00 0.00 3.51
6485 9568 3.403038 ACATAAGCGGTATCTTGATGGC 58.597 45.455 0.00 0.00 0.00 4.40
6486 9569 2.543777 TAAGCGGTATCTTGATGGCC 57.456 50.000 0.00 0.00 0.00 5.36
6487 9570 0.546122 AAGCGGTATCTTGATGGCCA 59.454 50.000 8.56 8.56 0.00 5.36
6488 9571 0.767375 AGCGGTATCTTGATGGCCAT 59.233 50.000 20.96 20.96 0.00 4.40
6489 9572 0.877071 GCGGTATCTTGATGGCCATG 59.123 55.000 26.56 9.40 0.00 3.66
6490 9573 1.527034 CGGTATCTTGATGGCCATGG 58.473 55.000 26.56 13.13 0.00 3.66
6491 9574 1.251251 GGTATCTTGATGGCCATGGC 58.749 55.000 29.47 29.47 41.06 4.40
6492 9575 0.877071 GTATCTTGATGGCCATGGCG 59.123 55.000 29.90 15.34 43.06 5.69
6493 9576 0.250858 TATCTTGATGGCCATGGCGG 60.251 55.000 29.90 14.79 43.06 6.13
6494 9577 2.288642 ATCTTGATGGCCATGGCGGT 62.289 55.000 29.90 20.70 43.06 5.68
6495 9578 2.755064 TTGATGGCCATGGCGGTG 60.755 61.111 29.90 0.00 43.06 4.94
6496 9579 4.818863 TGATGGCCATGGCGGTGG 62.819 66.667 29.90 4.50 43.06 4.61
6497 9580 4.820744 GATGGCCATGGCGGTGGT 62.821 66.667 29.90 13.61 41.47 4.16
6498 9581 3.414136 GATGGCCATGGCGGTGGTA 62.414 63.158 29.90 12.13 41.47 3.25
6499 9582 2.697147 GATGGCCATGGCGGTGGTAT 62.697 60.000 29.90 16.09 41.47 2.73
6500 9583 1.422977 ATGGCCATGGCGGTGGTATA 61.423 55.000 29.90 9.02 41.47 1.47
6501 9584 1.149627 GGCCATGGCGGTGGTATAA 59.850 57.895 29.90 0.00 41.47 0.98
6502 9585 0.889186 GGCCATGGCGGTGGTATAAG 60.889 60.000 29.90 0.00 41.47 1.73
6503 9586 0.889186 GCCATGGCGGTGGTATAAGG 60.889 60.000 23.48 0.00 41.47 2.69
6504 9587 0.472471 CCATGGCGGTGGTATAAGGT 59.528 55.000 0.00 0.00 34.46 3.50
6505 9588 1.593196 CATGGCGGTGGTATAAGGTG 58.407 55.000 0.00 0.00 0.00 4.00
6506 9589 0.472471 ATGGCGGTGGTATAAGGTGG 59.528 55.000 0.00 0.00 0.00 4.61
6507 9590 1.147600 GGCGGTGGTATAAGGTGGG 59.852 63.158 0.00 0.00 0.00 4.61
6508 9591 1.339644 GGCGGTGGTATAAGGTGGGA 61.340 60.000 0.00 0.00 0.00 4.37
6509 9592 0.542805 GCGGTGGTATAAGGTGGGAA 59.457 55.000 0.00 0.00 0.00 3.97
6510 9593 1.474498 GCGGTGGTATAAGGTGGGAAG 60.474 57.143 0.00 0.00 0.00 3.46
6511 9594 2.112998 CGGTGGTATAAGGTGGGAAGA 58.887 52.381 0.00 0.00 0.00 2.87
6512 9595 2.159000 CGGTGGTATAAGGTGGGAAGAC 60.159 54.545 0.00 0.00 0.00 3.01
6513 9596 2.841881 GGTGGTATAAGGTGGGAAGACA 59.158 50.000 0.00 0.00 0.00 3.41
6514 9597 3.458487 GGTGGTATAAGGTGGGAAGACAT 59.542 47.826 0.00 0.00 0.00 3.06
6515 9598 4.444449 GGTGGTATAAGGTGGGAAGACATC 60.444 50.000 0.00 0.00 0.00 3.06
6516 9599 4.409247 GTGGTATAAGGTGGGAAGACATCT 59.591 45.833 0.00 0.00 31.91 2.90
6517 9600 4.654262 TGGTATAAGGTGGGAAGACATCTC 59.346 45.833 0.00 0.00 28.45 2.75
6518 9601 4.654262 GGTATAAGGTGGGAAGACATCTCA 59.346 45.833 0.00 0.00 35.67 3.27
6522 9605 3.374318 TGGGAAGACATCTCACCGA 57.626 52.632 0.00 0.00 32.01 4.69
6523 9606 1.866015 TGGGAAGACATCTCACCGAT 58.134 50.000 0.00 0.00 32.01 4.18
6524 9607 2.187958 TGGGAAGACATCTCACCGATT 58.812 47.619 0.00 0.00 32.01 3.34
6525 9608 2.571653 TGGGAAGACATCTCACCGATTT 59.428 45.455 0.00 0.00 32.01 2.17
6526 9609 2.939103 GGGAAGACATCTCACCGATTTG 59.061 50.000 0.00 0.00 0.00 2.32
6527 9610 2.352960 GGAAGACATCTCACCGATTTGC 59.647 50.000 0.00 0.00 0.00 3.68
6528 9611 3.265791 GAAGACATCTCACCGATTTGCT 58.734 45.455 0.00 0.00 0.00 3.91
6529 9612 2.625737 AGACATCTCACCGATTTGCTG 58.374 47.619 0.00 0.00 0.00 4.41
6530 9613 1.667724 GACATCTCACCGATTTGCTGG 59.332 52.381 0.00 0.00 0.00 4.85
6531 9614 1.003580 ACATCTCACCGATTTGCTGGT 59.996 47.619 0.00 0.00 39.66 4.00
6535 9618 2.436109 ACCGATTTGCTGGTGCCT 59.564 55.556 0.00 0.00 37.02 4.75
6536 9619 1.228552 ACCGATTTGCTGGTGCCTT 60.229 52.632 0.00 0.00 37.02 4.35
6537 9620 1.244019 ACCGATTTGCTGGTGCCTTC 61.244 55.000 0.00 0.00 37.02 3.46
6538 9621 0.962356 CCGATTTGCTGGTGCCTTCT 60.962 55.000 0.00 0.00 38.71 2.85
6539 9622 0.883833 CGATTTGCTGGTGCCTTCTT 59.116 50.000 0.00 0.00 38.71 2.52
6540 9623 1.135575 CGATTTGCTGGTGCCTTCTTC 60.136 52.381 0.00 0.00 38.71 2.87
6541 9624 0.883833 ATTTGCTGGTGCCTTCTTCG 59.116 50.000 0.00 0.00 38.71 3.79
6542 9625 1.795170 TTTGCTGGTGCCTTCTTCGC 61.795 55.000 0.00 0.00 38.71 4.70
6543 9626 3.435186 GCTGGTGCCTTCTTCGCC 61.435 66.667 0.00 0.00 34.79 5.54
6544 9627 2.032528 CTGGTGCCTTCTTCGCCA 59.967 61.111 0.00 0.00 41.37 5.69
6545 9628 1.600636 CTGGTGCCTTCTTCGCCAA 60.601 57.895 0.00 0.00 42.80 4.52
6546 9629 1.580845 CTGGTGCCTTCTTCGCCAAG 61.581 60.000 0.00 0.00 42.80 3.61
6547 9630 2.563427 GTGCCTTCTTCGCCAAGC 59.437 61.111 0.00 0.00 0.00 4.01
6548 9631 2.112928 TGCCTTCTTCGCCAAGCA 59.887 55.556 0.00 0.00 0.00 3.91
6549 9632 1.303561 TGCCTTCTTCGCCAAGCAT 60.304 52.632 0.00 0.00 0.00 3.79
6550 9633 1.138247 GCCTTCTTCGCCAAGCATG 59.862 57.895 0.00 0.00 0.00 4.06
6563 9646 2.045634 GCATGGAGCACAGCCAGA 60.046 61.111 0.00 0.00 44.79 3.86
6564 9647 1.453379 GCATGGAGCACAGCCAGAT 60.453 57.895 0.00 0.00 44.79 2.90
6565 9648 1.725557 GCATGGAGCACAGCCAGATG 61.726 60.000 0.00 0.00 44.79 2.90
6566 9649 1.453379 ATGGAGCACAGCCAGATGC 60.453 57.895 0.00 0.00 39.11 3.91
6567 9650 3.200593 GGAGCACAGCCAGATGCG 61.201 66.667 0.00 0.00 46.74 4.73
6568 9651 2.125391 GAGCACAGCCAGATGCGA 60.125 61.111 0.00 0.00 46.74 5.10
6569 9652 2.435586 AGCACAGCCAGATGCGAC 60.436 61.111 0.00 0.00 46.74 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.117150 GTGACTATGTAAGGGCCCGA 58.883 55.000 18.44 5.55 0.00 5.14
36 37 2.116238 TGAGGGTGACTATGTAAGGGC 58.884 52.381 0.00 0.00 0.00 5.19
178 179 2.691526 GCATCCTTCATCTTTGATGGCA 59.308 45.455 7.58 0.00 43.58 4.92
190 191 0.464373 GCAAGATCCGGCATCCTTCA 60.464 55.000 0.00 0.00 30.71 3.02
200 201 1.376543 ATGACAGCAAGCAAGATCCG 58.623 50.000 0.00 0.00 0.00 4.18
214 215 6.716628 GGGGATGCTAATTGAAGATTATGACA 59.283 38.462 0.00 0.00 0.00 3.58
282 283 4.018506 TCAGATGTTTTGCCTGGGAGATTA 60.019 41.667 0.00 0.00 0.00 1.75
343 2590 1.985159 TCTGGGGATTAGCACAAGTGT 59.015 47.619 1.79 0.00 0.00 3.55
423 2670 1.065764 CGAGATGGTTGGCGATCGA 59.934 57.895 21.57 0.00 35.39 3.59
448 2695 5.677567 AGGAGGAAACAAAGAAGTACGAAA 58.322 37.500 0.00 0.00 0.00 3.46
532 2780 1.072331 GTTGGTCTGGGAAGAAGCTGA 59.928 52.381 0.00 0.00 0.00 4.26
691 2956 4.106197 CCGTCTAGAGTTTTTCTGATCCG 58.894 47.826 0.00 0.00 36.61 4.18
692 2957 3.866327 GCCGTCTAGAGTTTTTCTGATCC 59.134 47.826 0.00 0.00 36.61 3.36
715 2982 4.451150 TCTCGCGGCGCTTCCATT 62.451 61.111 30.54 0.00 34.01 3.16
729 2997 2.361119 AGTTTTGGGTTTTTCGCCTCTC 59.639 45.455 0.00 0.00 0.00 3.20
745 3013 7.825983 AATCCTAAAGGTACCCTCTAGTTTT 57.174 36.000 8.74 3.24 36.34 2.43
764 3032 7.515643 CGTAACTAATTTCGTCAACAAATCCT 58.484 34.615 0.00 0.00 0.00 3.24
766 3034 7.006210 CAGCGTAACTAATTTCGTCAACAAATC 59.994 37.037 0.00 0.00 31.79 2.17
767 3035 6.795114 CAGCGTAACTAATTTCGTCAACAAAT 59.205 34.615 0.00 0.00 31.79 2.32
768 3036 6.130723 CAGCGTAACTAATTTCGTCAACAAA 58.869 36.000 0.00 0.00 31.79 2.83
769 3037 5.333492 CCAGCGTAACTAATTTCGTCAACAA 60.333 40.000 0.00 0.00 31.79 2.83
770 3038 4.150980 CCAGCGTAACTAATTTCGTCAACA 59.849 41.667 0.00 0.00 31.79 3.33
771 3039 4.151157 ACCAGCGTAACTAATTTCGTCAAC 59.849 41.667 0.00 0.00 31.79 3.18
772 3040 4.309099 ACCAGCGTAACTAATTTCGTCAA 58.691 39.130 0.00 0.00 31.79 3.18
773 3041 3.916761 ACCAGCGTAACTAATTTCGTCA 58.083 40.909 0.00 0.00 31.79 4.35
774 3042 5.745294 TGATACCAGCGTAACTAATTTCGTC 59.255 40.000 0.00 0.00 31.79 4.20
775 3043 5.653507 TGATACCAGCGTAACTAATTTCGT 58.346 37.500 0.00 0.00 31.79 3.85
776 3044 6.199043 CTGATACCAGCGTAACTAATTTCG 57.801 41.667 0.00 0.00 33.07 3.46
820 3088 1.202758 TCGAACAAATGGGCTGACAGT 60.203 47.619 3.99 0.00 0.00 3.55
839 3107 2.817396 GGCTTCAGTCTGCCGCTC 60.817 66.667 11.37 1.57 39.71 5.03
903 3174 2.107953 GCGGAGTGATGGGCTCTC 59.892 66.667 0.00 0.00 36.60 3.20
1013 3293 1.591059 CGCCATCTTCGCTCCTCAG 60.591 63.158 0.00 0.00 0.00 3.35
1166 3482 1.885850 AAGCAACCACGTGACGGAC 60.886 57.895 19.30 2.12 0.00 4.79
1182 3498 1.817099 GGCAGGAGACGCCATCAAG 60.817 63.158 0.00 0.00 45.41 3.02
1191 3507 2.092699 AGAAGCAAATAGGGCAGGAGAC 60.093 50.000 0.00 0.00 0.00 3.36
1192 3508 2.092753 CAGAAGCAAATAGGGCAGGAGA 60.093 50.000 0.00 0.00 0.00 3.71
1193 3509 2.295885 CAGAAGCAAATAGGGCAGGAG 58.704 52.381 0.00 0.00 0.00 3.69
1194 3510 1.635487 ACAGAAGCAAATAGGGCAGGA 59.365 47.619 0.00 0.00 0.00 3.86
1195 3511 2.019984 GACAGAAGCAAATAGGGCAGG 58.980 52.381 0.00 0.00 0.00 4.85
1196 3512 2.941720 GAGACAGAAGCAAATAGGGCAG 59.058 50.000 0.00 0.00 0.00 4.85
1200 3516 3.806521 CCGATGAGACAGAAGCAAATAGG 59.193 47.826 0.00 0.00 0.00 2.57
1201 3517 3.806521 CCCGATGAGACAGAAGCAAATAG 59.193 47.826 0.00 0.00 0.00 1.73
1202 3518 3.450817 TCCCGATGAGACAGAAGCAAATA 59.549 43.478 0.00 0.00 0.00 1.40
1203 3519 2.237143 TCCCGATGAGACAGAAGCAAAT 59.763 45.455 0.00 0.00 0.00 2.32
1204 3520 1.623311 TCCCGATGAGACAGAAGCAAA 59.377 47.619 0.00 0.00 0.00 3.68
1205 3521 1.066858 GTCCCGATGAGACAGAAGCAA 60.067 52.381 0.00 0.00 34.27 3.91
1207 3523 0.526524 CGTCCCGATGAGACAGAAGC 60.527 60.000 0.00 0.00 33.70 3.86
1208 3524 0.101399 CCGTCCCGATGAGACAGAAG 59.899 60.000 0.00 0.00 33.70 2.85
1209 3525 1.320344 CCCGTCCCGATGAGACAGAA 61.320 60.000 0.00 0.00 33.70 3.02
1227 3543 2.119655 CCAGGAGCTTGCAGCATCC 61.120 63.158 5.47 5.47 45.56 3.51
1230 3546 2.350134 CTCCAGGAGCTTGCAGCA 59.650 61.111 2.60 0.00 45.56 4.41
1271 3587 8.063630 GCGGCAAAGGAAAATCATTATTATTTG 58.936 33.333 0.00 0.00 0.00 2.32
1292 3608 0.108186 CACCACTAGAATCTGCGGCA 60.108 55.000 1.29 1.29 0.00 5.69
1384 3710 7.154435 ACACGTATCTACTTGAACATACAGT 57.846 36.000 0.00 0.00 30.88 3.55
1404 3730 2.470999 GCATAACCAAAACAGCAACACG 59.529 45.455 0.00 0.00 0.00 4.49
1534 3949 8.212259 AGCAGGATTGAGGTATTATAGTCATT 57.788 34.615 0.00 0.00 0.00 2.57
1535 3950 7.805083 AGCAGGATTGAGGTATTATAGTCAT 57.195 36.000 0.00 0.00 0.00 3.06
1536 3951 7.618019 AAGCAGGATTGAGGTATTATAGTCA 57.382 36.000 0.00 0.00 0.00 3.41
1537 3952 9.425577 GTTAAGCAGGATTGAGGTATTATAGTC 57.574 37.037 0.00 0.00 0.00 2.59
1538 3953 8.376270 GGTTAAGCAGGATTGAGGTATTATAGT 58.624 37.037 0.00 0.00 0.00 2.12
1539 3954 8.375506 TGGTTAAGCAGGATTGAGGTATTATAG 58.624 37.037 2.54 0.00 0.00 1.31
1540 3955 8.270137 TGGTTAAGCAGGATTGAGGTATTATA 57.730 34.615 2.54 0.00 0.00 0.98
1541 3956 7.149202 TGGTTAAGCAGGATTGAGGTATTAT 57.851 36.000 2.54 0.00 0.00 1.28
1542 3957 6.409234 CCTGGTTAAGCAGGATTGAGGTATTA 60.409 42.308 39.01 0.00 40.95 0.98
1593 4034 2.487986 CCCCAAGCCAGGAAAGCTATAG 60.488 54.545 0.00 0.00 40.49 1.31
1640 4087 7.087409 TCACTGAAAATATGATCGCAACATT 57.913 32.000 0.00 0.00 0.00 2.71
1641 4088 6.682423 TCACTGAAAATATGATCGCAACAT 57.318 33.333 0.00 0.00 0.00 2.71
1642 4089 6.315891 TCATCACTGAAAATATGATCGCAACA 59.684 34.615 0.00 0.00 30.58 3.33
1884 4332 6.513180 ACATACCTGTGGAGTGTTATATTCG 58.487 40.000 0.00 0.00 33.22 3.34
1962 4416 4.249638 AGGCAACAGGATTAAGGCATTA 57.750 40.909 0.00 0.00 41.41 1.90
1963 4417 3.105959 AGGCAACAGGATTAAGGCATT 57.894 42.857 0.00 0.00 41.41 3.56
1964 4418 2.834638 AGGCAACAGGATTAAGGCAT 57.165 45.000 0.00 0.00 41.41 4.40
1965 4419 2.562298 CAAAGGCAACAGGATTAAGGCA 59.438 45.455 0.00 0.00 41.41 4.75
2006 4460 6.780031 TGAAACTGGGATGACCTTTTTCATAA 59.220 34.615 8.12 0.00 41.61 1.90
2035 4489 3.194968 ACGTGAACCAGGGTAGATAGTTG 59.805 47.826 0.00 0.00 0.00 3.16
2062 4516 5.449107 TCCGATCCATGTTAACTACTAGC 57.551 43.478 7.22 0.00 0.00 3.42
2174 4629 3.799420 GCTTCGAGCAATCGTCTTTCTAT 59.201 43.478 0.00 0.00 41.89 1.98
2271 5010 6.531503 TTGATTTGGACGGGCATTTAAATA 57.468 33.333 0.00 0.00 0.00 1.40
2297 5036 8.504812 AAACAATTTATGAAAGCAAAAGTGGT 57.495 26.923 0.00 0.00 33.71 4.16
2870 5620 0.808125 ACAACATTGTGCGTGTGTGT 59.192 45.000 0.00 0.00 40.49 3.72
2897 5660 7.040755 CCAAGTTACATGAAACCTGTCATAACA 60.041 37.037 0.00 0.00 36.04 2.41
2940 5703 5.919141 CACTTCAGAAGATTTTCCTGCAAAG 59.081 40.000 17.56 0.00 33.64 2.77
3351 6154 5.508224 GCTAAAAGAACATCACGTATTGCAC 59.492 40.000 0.00 0.00 0.00 4.57
3697 6501 9.630098 CTAATAAGTTGTGCATTCACTTCAAAT 57.370 29.630 10.44 0.00 43.49 2.32
3764 6572 1.146152 TCCACCACCCCACCTTAAAAG 59.854 52.381 0.00 0.00 0.00 2.27
4118 6928 2.553602 CTGCCAGTACATTTTGCAGTCA 59.446 45.455 11.55 0.00 43.32 3.41
4436 7246 1.081892 CAGGAGACCAGAACAATGCG 58.918 55.000 0.00 0.00 0.00 4.73
4623 7437 8.918202 TTTTGTAAACTTCACCAGATAGTGAT 57.082 30.769 0.00 0.00 45.80 3.06
4750 7698 6.378710 AACAGGTGAAGAAAACTAAAGCTC 57.621 37.500 0.00 0.00 0.00 4.09
4752 7700 8.804743 GTTTTAACAGGTGAAGAAAACTAAAGC 58.195 33.333 0.00 0.00 37.15 3.51
4758 7709 7.272731 GTGAGTGTTTTAACAGGTGAAGAAAAC 59.727 37.037 0.00 0.00 40.05 2.43
4905 7925 7.666063 TCCAGAATCATCTTAGTTCATCTCA 57.334 36.000 0.00 0.00 32.03 3.27
4906 7926 8.203485 AGTTCCAGAATCATCTTAGTTCATCTC 58.797 37.037 0.00 0.00 32.03 2.75
5063 8083 6.729690 AATTCAAAGAACAAAGGATGGACA 57.270 33.333 0.00 0.00 0.00 4.02
5086 8115 5.379187 ACATACAGCAAATGCATGGAGATA 58.621 37.500 0.00 0.00 45.16 1.98
5159 8198 2.766828 AGTAAGTAGTGATGGTGGCCTC 59.233 50.000 3.32 0.00 0.00 4.70
5270 8309 0.453793 GTCTCTTGCGCTCTAGCTCA 59.546 55.000 9.73 0.00 39.32 4.26
5357 8396 1.048160 TCAGCTCCATCCGGTATGCA 61.048 55.000 0.00 0.00 33.92 3.96
5364 8403 2.420890 GCCTCTCAGCTCCATCCG 59.579 66.667 0.00 0.00 0.00 4.18
5477 8516 2.383527 GCGCTTTCACTCCTGGTCG 61.384 63.158 0.00 0.00 0.00 4.79
5494 8533 5.588648 AGAGACTAGTATGAGAGACTTGTGC 59.411 44.000 0.00 0.00 33.83 4.57
5501 8540 5.610398 CAGCAGAGAGACTAGTATGAGAGA 58.390 45.833 0.00 0.00 0.00 3.10
5502 8541 4.214119 GCAGCAGAGAGACTAGTATGAGAG 59.786 50.000 0.00 0.00 0.00 3.20
5503 8542 4.133820 GCAGCAGAGAGACTAGTATGAGA 58.866 47.826 0.00 0.00 0.00 3.27
5509 8548 0.034960 TCGGCAGCAGAGAGACTAGT 60.035 55.000 0.00 0.00 0.00 2.57
5550 8589 4.300189 TGCAAAACAACAGCGATTTACT 57.700 36.364 0.00 0.00 0.00 2.24
5585 8632 5.106317 GGCAGAAAGAACGACAAATTATCCA 60.106 40.000 0.00 0.00 0.00 3.41
5597 8644 2.755650 AGTGTACTGGCAGAAAGAACG 58.244 47.619 23.66 0.00 0.00 3.95
5599 8646 4.578928 GGAAAAGTGTACTGGCAGAAAGAA 59.421 41.667 23.66 0.00 0.00 2.52
5710 8766 9.559958 CAGGCAAATACAGTACTAAAGAAAATG 57.440 33.333 0.00 0.00 0.00 2.32
5724 8780 6.603237 TTTCGATATCACAGGCAAATACAG 57.397 37.500 3.12 0.00 0.00 2.74
5725 8781 7.066887 ACAATTTCGATATCACAGGCAAATACA 59.933 33.333 3.12 0.00 0.00 2.29
5726 8782 7.417612 ACAATTTCGATATCACAGGCAAATAC 58.582 34.615 3.12 0.00 0.00 1.89
5760 8816 4.136796 CTCAAACACCAGGAAGAACATCA 58.863 43.478 0.00 0.00 0.00 3.07
5765 8821 1.494721 AGGCTCAAACACCAGGAAGAA 59.505 47.619 0.00 0.00 0.00 2.52
5785 8841 7.534723 AGTACAGTATTGGACAACAGAACTA 57.465 36.000 3.12 0.00 40.89 2.24
5797 8853 8.790718 AGATACCGTACATTAGTACAGTATTGG 58.209 37.037 13.04 5.36 46.85 3.16
5811 8867 9.909644 GATCAAACAGTAATAGATACCGTACAT 57.090 33.333 0.00 0.00 34.89 2.29
5812 8868 8.905850 TGATCAAACAGTAATAGATACCGTACA 58.094 33.333 0.00 0.00 34.89 2.90
5813 8869 9.740239 TTGATCAAACAGTAATAGATACCGTAC 57.260 33.333 5.45 0.00 34.89 3.67
5814 8870 9.740239 GTTGATCAAACAGTAATAGATACCGTA 57.260 33.333 10.35 0.00 38.75 4.02
5815 8871 8.255206 TGTTGATCAAACAGTAATAGATACCGT 58.745 33.333 10.35 0.00 43.96 4.83
5816 8872 8.642908 TGTTGATCAAACAGTAATAGATACCG 57.357 34.615 10.35 0.00 43.96 4.02
5859 8922 3.561725 GGCGAGTATTTTCTCAAGATGGG 59.438 47.826 0.00 0.00 34.46 4.00
5861 8924 5.728898 GCAAGGCGAGTATTTTCTCAAGATG 60.729 44.000 0.00 0.00 34.46 2.90
5862 8925 4.333926 GCAAGGCGAGTATTTTCTCAAGAT 59.666 41.667 0.00 0.00 34.46 2.40
5867 8930 5.993106 ATAAGCAAGGCGAGTATTTTCTC 57.007 39.130 0.00 0.00 0.00 2.87
5912 8976 1.908299 GGGTGGGAGGTTTTGCTGG 60.908 63.158 0.00 0.00 0.00 4.85
5936 9007 3.791973 TTATACCTTGCCAAAATGCCG 57.208 42.857 0.00 0.00 0.00 5.69
5956 9028 4.262164 GCCAAAACCTGAGTTGATCATGTT 60.262 41.667 0.00 0.00 45.35 2.71
5958 9030 3.256383 TGCCAAAACCTGAGTTGATCATG 59.744 43.478 0.00 0.00 37.28 3.07
5961 9033 4.525912 ATTGCCAAAACCTGAGTTGATC 57.474 40.909 0.00 0.00 35.97 2.92
5962 9034 4.634199 CAATTGCCAAAACCTGAGTTGAT 58.366 39.130 0.00 0.00 35.97 2.57
5964 9036 2.545106 GCAATTGCCAAAACCTGAGTTG 59.455 45.455 20.06 0.00 33.48 3.16
5965 9037 2.170187 TGCAATTGCCAAAACCTGAGTT 59.830 40.909 26.94 0.00 41.18 3.01
5966 9038 1.761784 TGCAATTGCCAAAACCTGAGT 59.238 42.857 26.94 0.00 41.18 3.41
6023 9106 1.616159 ACCTGCGTTTGGCTGTAATT 58.384 45.000 0.00 0.00 44.05 1.40
6041 9124 6.119144 ACTTATGATTTGTTCGTGGCATAC 57.881 37.500 0.00 0.00 0.00 2.39
6042 9125 8.341903 CAATACTTATGATTTGTTCGTGGCATA 58.658 33.333 0.00 0.00 0.00 3.14
6043 9126 6.942532 ATACTTATGATTTGTTCGTGGCAT 57.057 33.333 0.00 0.00 0.00 4.40
6044 9127 6.372937 TCAATACTTATGATTTGTTCGTGGCA 59.627 34.615 0.00 0.00 0.00 4.92
6045 9128 6.781138 TCAATACTTATGATTTGTTCGTGGC 58.219 36.000 0.00 0.00 0.00 5.01
6046 9129 7.425309 CGTTCAATACTTATGATTTGTTCGTGG 59.575 37.037 0.00 0.00 0.00 4.94
6047 9130 8.166066 TCGTTCAATACTTATGATTTGTTCGTG 58.834 33.333 0.00 0.00 0.00 4.35
6048 9131 8.166706 GTCGTTCAATACTTATGATTTGTTCGT 58.833 33.333 0.00 0.00 0.00 3.85
6049 9132 8.380644 AGTCGTTCAATACTTATGATTTGTTCG 58.619 33.333 0.00 0.00 0.00 3.95
6051 9134 9.825972 CAAGTCGTTCAATACTTATGATTTGTT 57.174 29.630 0.00 0.00 34.23 2.83
6055 9138 9.095065 GTACCAAGTCGTTCAATACTTATGATT 57.905 33.333 0.00 0.00 34.23 2.57
6057 9140 7.543172 GTGTACCAAGTCGTTCAATACTTATGA 59.457 37.037 0.00 0.00 34.23 2.15
6070 9153 1.006571 CCGCTGTGTACCAAGTCGT 60.007 57.895 0.00 0.00 0.00 4.34
6077 9160 3.901797 AAGGCTGCCGCTGTGTACC 62.902 63.158 13.96 0.00 36.09 3.34
6080 9163 4.569180 ACAAGGCTGCCGCTGTGT 62.569 61.111 23.16 17.81 36.09 3.72
6116 9199 4.996788 TCTAACGGTTTCCTATGTCCTC 57.003 45.455 0.00 0.00 0.00 3.71
6118 9201 5.334724 TCTTCTAACGGTTTCCTATGTCC 57.665 43.478 0.00 0.00 0.00 4.02
6125 9208 8.538409 TTTTGTAGTATCTTCTAACGGTTTCC 57.462 34.615 0.00 0.00 0.00 3.13
6126 9209 9.968743 CATTTTGTAGTATCTTCTAACGGTTTC 57.031 33.333 0.00 0.00 0.00 2.78
6127 9210 9.498176 ACATTTTGTAGTATCTTCTAACGGTTT 57.502 29.630 0.00 0.00 0.00 3.27
6156 9239 9.202545 GCTCAAAAATGAATATTCGAAAATTGC 57.797 29.630 10.80 5.65 0.00 3.56
6229 9312 9.665719 TTGATGCAGTTTATCACTAAAGTATGA 57.334 29.630 0.00 0.00 34.50 2.15
6237 9320 9.407380 ACCAAATATTGATGCAGTTTATCACTA 57.593 29.630 0.00 0.00 34.50 2.74
6238 9321 8.297470 ACCAAATATTGATGCAGTTTATCACT 57.703 30.769 0.00 0.00 34.50 3.41
6239 9322 7.649306 GGACCAAATATTGATGCAGTTTATCAC 59.351 37.037 0.00 0.00 34.50 3.06
6240 9323 7.560991 AGGACCAAATATTGATGCAGTTTATCA 59.439 33.333 0.00 0.00 33.00 2.15
6241 9324 7.945134 AGGACCAAATATTGATGCAGTTTATC 58.055 34.615 0.00 0.00 0.00 1.75
6242 9325 7.902920 AGGACCAAATATTGATGCAGTTTAT 57.097 32.000 0.00 0.00 0.00 1.40
6243 9326 7.011950 CGTAGGACCAAATATTGATGCAGTTTA 59.988 37.037 0.00 0.00 0.00 2.01
6244 9327 6.183360 CGTAGGACCAAATATTGATGCAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
6245 9328 5.296780 CGTAGGACCAAATATTGATGCAGTT 59.703 40.000 0.00 0.00 0.00 3.16
6246 9329 4.816385 CGTAGGACCAAATATTGATGCAGT 59.184 41.667 0.00 0.00 0.00 4.40
6247 9330 4.319766 GCGTAGGACCAAATATTGATGCAG 60.320 45.833 0.00 0.00 0.00 4.41
6248 9331 3.563808 GCGTAGGACCAAATATTGATGCA 59.436 43.478 0.00 0.00 0.00 3.96
6249 9332 3.363970 CGCGTAGGACCAAATATTGATGC 60.364 47.826 0.00 0.00 0.00 3.91
6250 9333 3.807622 ACGCGTAGGACCAAATATTGATG 59.192 43.478 11.67 0.00 0.00 3.07
6251 9334 4.067972 ACGCGTAGGACCAAATATTGAT 57.932 40.909 11.67 0.00 0.00 2.57
6252 9335 3.530265 ACGCGTAGGACCAAATATTGA 57.470 42.857 11.67 0.00 0.00 2.57
6253 9336 6.128742 GGTTATACGCGTAGGACCAAATATTG 60.129 42.308 32.31 0.00 0.00 1.90
6254 9337 5.928264 GGTTATACGCGTAGGACCAAATATT 59.072 40.000 32.31 14.69 0.00 1.28
6255 9338 5.244626 AGGTTATACGCGTAGGACCAAATAT 59.755 40.000 35.47 22.17 0.00 1.28
6256 9339 4.584325 AGGTTATACGCGTAGGACCAAATA 59.416 41.667 35.47 18.76 0.00 1.40
6257 9340 3.385755 AGGTTATACGCGTAGGACCAAAT 59.614 43.478 35.47 22.68 0.00 2.32
6258 9341 2.760092 AGGTTATACGCGTAGGACCAAA 59.240 45.455 35.47 18.51 0.00 3.28
6259 9342 2.378038 AGGTTATACGCGTAGGACCAA 58.622 47.619 35.47 19.60 0.00 3.67
6260 9343 2.057137 AGGTTATACGCGTAGGACCA 57.943 50.000 35.47 16.04 0.00 4.02
6261 9344 4.773323 AATAGGTTATACGCGTAGGACC 57.227 45.455 31.17 31.17 0.00 4.46
6262 9345 6.241207 TGTAATAGGTTATACGCGTAGGAC 57.759 41.667 24.78 22.22 0.00 3.85
6263 9346 6.875948 TTGTAATAGGTTATACGCGTAGGA 57.124 37.500 24.78 12.19 0.00 2.94
6264 9347 6.363357 GGTTTGTAATAGGTTATACGCGTAGG 59.637 42.308 24.78 0.00 0.00 3.18
6265 9348 6.086765 CGGTTTGTAATAGGTTATACGCGTAG 59.913 42.308 24.78 0.11 0.00 3.51
6266 9349 5.912396 CGGTTTGTAATAGGTTATACGCGTA 59.088 40.000 22.94 22.94 0.00 4.42
6267 9350 4.739716 CGGTTTGTAATAGGTTATACGCGT 59.260 41.667 19.17 19.17 0.00 6.01
6268 9351 4.148696 CCGGTTTGTAATAGGTTATACGCG 59.851 45.833 3.53 3.53 0.00 6.01
6269 9352 5.049828 ACCGGTTTGTAATAGGTTATACGC 58.950 41.667 0.00 0.00 0.00 4.42
6270 9353 5.463061 CCACCGGTTTGTAATAGGTTATACG 59.537 44.000 2.97 0.00 32.04 3.06
6271 9354 6.348498 ACCACCGGTTTGTAATAGGTTATAC 58.652 40.000 2.97 0.00 32.04 1.47
6272 9355 6.558488 ACCACCGGTTTGTAATAGGTTATA 57.442 37.500 2.97 0.00 32.04 0.98
6273 9356 5.440207 ACCACCGGTTTGTAATAGGTTAT 57.560 39.130 2.97 0.00 32.04 1.89
6274 9357 4.906747 ACCACCGGTTTGTAATAGGTTA 57.093 40.909 2.97 0.00 32.04 2.85
6275 9358 3.793819 ACCACCGGTTTGTAATAGGTT 57.206 42.857 2.97 0.00 32.04 3.50
6276 9359 3.055167 GGTACCACCGGTTTGTAATAGGT 60.055 47.826 2.97 9.56 37.09 3.08
6277 9360 3.055240 TGGTACCACCGGTTTGTAATAGG 60.055 47.826 11.60 2.34 42.58 2.57
6278 9361 4.205065 TGGTACCACCGGTTTGTAATAG 57.795 45.455 11.60 0.00 42.58 1.73
6279 9362 4.630644 TTGGTACCACCGGTTTGTAATA 57.369 40.909 16.04 0.00 42.58 0.98
6280 9363 3.505480 TTGGTACCACCGGTTTGTAAT 57.495 42.857 16.04 0.00 42.58 1.89
6281 9364 3.287867 TTTGGTACCACCGGTTTGTAA 57.712 42.857 16.04 0.00 42.58 2.41
6282 9365 3.287867 TTTTGGTACCACCGGTTTGTA 57.712 42.857 16.04 7.05 42.58 2.41
6283 9366 2.140839 TTTTGGTACCACCGGTTTGT 57.859 45.000 16.04 8.25 42.58 2.83
6304 9387 7.148171 GCTGATGCTGATACTTTTAGAAAAGGT 60.148 37.037 16.89 7.04 41.65 3.50
6305 9388 7.148188 TGCTGATGCTGATACTTTTAGAAAAGG 60.148 37.037 16.89 0.00 43.39 3.11
6306 9389 7.755591 TGCTGATGCTGATACTTTTAGAAAAG 58.244 34.615 12.20 12.20 43.98 2.27
6307 9390 7.686438 TGCTGATGCTGATACTTTTAGAAAA 57.314 32.000 0.00 0.00 40.48 2.29
6308 9391 7.553760 TGATGCTGATGCTGATACTTTTAGAAA 59.446 33.333 0.00 0.00 40.48 2.52
6309 9392 7.049754 TGATGCTGATGCTGATACTTTTAGAA 58.950 34.615 0.00 0.00 40.48 2.10
6310 9393 6.585416 TGATGCTGATGCTGATACTTTTAGA 58.415 36.000 0.00 0.00 40.48 2.10
6311 9394 6.566187 GCTGATGCTGATGCTGATACTTTTAG 60.566 42.308 0.00 0.00 40.48 1.85
6312 9395 5.237996 GCTGATGCTGATGCTGATACTTTTA 59.762 40.000 0.00 0.00 40.48 1.52
6313 9396 4.036498 GCTGATGCTGATGCTGATACTTTT 59.964 41.667 0.00 0.00 40.48 2.27
6314 9397 3.564644 GCTGATGCTGATGCTGATACTTT 59.435 43.478 0.00 0.00 40.48 2.66
6315 9398 3.139850 GCTGATGCTGATGCTGATACTT 58.860 45.455 0.00 0.00 40.48 2.24
6316 9399 2.104281 TGCTGATGCTGATGCTGATACT 59.896 45.455 0.00 0.00 40.48 2.12
6317 9400 2.490991 TGCTGATGCTGATGCTGATAC 58.509 47.619 0.00 0.00 40.48 2.24
6318 9401 2.922740 TGCTGATGCTGATGCTGATA 57.077 45.000 0.00 0.00 40.48 2.15
6319 9402 2.155279 GATGCTGATGCTGATGCTGAT 58.845 47.619 0.00 0.00 40.48 2.90
6320 9403 1.141053 AGATGCTGATGCTGATGCTGA 59.859 47.619 0.00 0.00 40.48 4.26
6321 9404 1.265365 CAGATGCTGATGCTGATGCTG 59.735 52.381 0.00 0.00 40.48 4.41
6322 9405 1.134068 ACAGATGCTGATGCTGATGCT 60.134 47.619 0.82 0.00 40.48 3.79
6323 9406 1.309950 ACAGATGCTGATGCTGATGC 58.690 50.000 0.82 0.00 40.48 3.91
6324 9407 3.002759 CAGAACAGATGCTGATGCTGATG 59.997 47.826 0.82 0.00 40.48 3.07
6325 9408 3.206964 CAGAACAGATGCTGATGCTGAT 58.793 45.455 0.82 0.00 40.48 2.90
6326 9409 2.629051 CAGAACAGATGCTGATGCTGA 58.371 47.619 0.82 0.00 40.48 4.26
6327 9410 1.064208 GCAGAACAGATGCTGATGCTG 59.936 52.381 0.82 6.53 40.59 4.41
6328 9411 1.380524 GCAGAACAGATGCTGATGCT 58.619 50.000 0.82 0.00 40.59 3.79
6329 9412 3.920144 GCAGAACAGATGCTGATGC 57.080 52.632 0.82 5.14 40.59 3.91
6335 9418 6.037500 TGTGTAAATATCAGCAGAACAGATGC 59.962 38.462 0.00 0.00 44.18 3.91
6336 9419 7.543947 TGTGTAAATATCAGCAGAACAGATG 57.456 36.000 0.00 0.00 0.00 2.90
6337 9420 7.281774 CCTTGTGTAAATATCAGCAGAACAGAT 59.718 37.037 0.00 0.00 0.00 2.90
6338 9421 6.595326 CCTTGTGTAAATATCAGCAGAACAGA 59.405 38.462 0.00 0.00 0.00 3.41
6339 9422 6.183360 CCCTTGTGTAAATATCAGCAGAACAG 60.183 42.308 0.00 0.00 0.00 3.16
6340 9423 5.647658 CCCTTGTGTAAATATCAGCAGAACA 59.352 40.000 0.00 0.00 0.00 3.18
6341 9424 5.066505 CCCCTTGTGTAAATATCAGCAGAAC 59.933 44.000 0.00 0.00 0.00 3.01
6342 9425 5.192927 CCCCTTGTGTAAATATCAGCAGAA 58.807 41.667 0.00 0.00 0.00 3.02
6343 9426 4.227300 ACCCCTTGTGTAAATATCAGCAGA 59.773 41.667 0.00 0.00 0.00 4.26
6344 9427 4.526970 ACCCCTTGTGTAAATATCAGCAG 58.473 43.478 0.00 0.00 0.00 4.24
6345 9428 4.584638 ACCCCTTGTGTAAATATCAGCA 57.415 40.909 0.00 0.00 0.00 4.41
6346 9429 4.947388 TGAACCCCTTGTGTAAATATCAGC 59.053 41.667 0.00 0.00 0.00 4.26
6347 9430 6.039717 CCATGAACCCCTTGTGTAAATATCAG 59.960 42.308 0.00 0.00 0.00 2.90
6348 9431 5.890985 CCATGAACCCCTTGTGTAAATATCA 59.109 40.000 0.00 0.00 0.00 2.15
6349 9432 5.221244 GCCATGAACCCCTTGTGTAAATATC 60.221 44.000 0.00 0.00 0.00 1.63
6350 9433 4.649218 GCCATGAACCCCTTGTGTAAATAT 59.351 41.667 0.00 0.00 0.00 1.28
6351 9434 4.020543 GCCATGAACCCCTTGTGTAAATA 58.979 43.478 0.00 0.00 0.00 1.40
6352 9435 2.831526 GCCATGAACCCCTTGTGTAAAT 59.168 45.455 0.00 0.00 0.00 1.40
6353 9436 2.243810 GCCATGAACCCCTTGTGTAAA 58.756 47.619 0.00 0.00 0.00 2.01
6354 9437 1.884497 CGCCATGAACCCCTTGTGTAA 60.884 52.381 0.00 0.00 0.00 2.41
6355 9438 0.322098 CGCCATGAACCCCTTGTGTA 60.322 55.000 0.00 0.00 0.00 2.90
6356 9439 1.603455 CGCCATGAACCCCTTGTGT 60.603 57.895 0.00 0.00 0.00 3.72
6357 9440 2.993471 GCGCCATGAACCCCTTGTG 61.993 63.158 0.00 0.00 0.00 3.33
6358 9441 2.676471 GCGCCATGAACCCCTTGT 60.676 61.111 0.00 0.00 0.00 3.16
6359 9442 3.451894 GGCGCCATGAACCCCTTG 61.452 66.667 24.80 0.00 0.00 3.61
6360 9443 3.944250 CTGGCGCCATGAACCCCTT 62.944 63.158 32.87 0.00 0.00 3.95
6361 9444 4.431131 CTGGCGCCATGAACCCCT 62.431 66.667 32.87 0.00 0.00 4.79
6364 9447 3.372730 TTGCTGGCGCCATGAACC 61.373 61.111 32.87 16.09 34.43 3.62
6365 9448 2.126346 GTTGCTGGCGCCATGAAC 60.126 61.111 32.87 28.69 34.43 3.18
6366 9449 2.596923 TGTTGCTGGCGCCATGAA 60.597 55.556 32.87 22.32 34.43 2.57
6367 9450 3.057548 CTGTTGCTGGCGCCATGA 61.058 61.111 32.87 17.16 34.43 3.07
6368 9451 4.789075 GCTGTTGCTGGCGCCATG 62.789 66.667 32.87 24.10 36.03 3.66
6376 9459 4.374702 GACCGCACGCTGTTGCTG 62.375 66.667 1.06 0.00 40.62 4.41
6386 9469 4.129737 TGCTAGAGGCGACCGCAC 62.130 66.667 16.47 9.34 45.43 5.34
6387 9470 4.129737 GTGCTAGAGGCGACCGCA 62.130 66.667 16.47 0.00 45.43 5.69
6388 9471 4.874977 GGTGCTAGAGGCGACCGC 62.875 72.222 5.75 5.75 45.43 5.68
6389 9472 3.417275 CTGGTGCTAGAGGCGACCG 62.417 68.421 0.00 0.00 45.43 4.79
6390 9473 2.496817 CTGGTGCTAGAGGCGACC 59.503 66.667 0.00 0.00 45.43 4.79
6391 9474 2.496817 CCTGGTGCTAGAGGCGAC 59.503 66.667 0.00 0.00 45.43 5.19
6392 9475 2.759973 CCCTGGTGCTAGAGGCGA 60.760 66.667 0.00 0.00 45.43 5.54
6393 9476 4.537433 GCCCTGGTGCTAGAGGCG 62.537 72.222 0.00 0.00 45.43 5.52
6394 9477 3.397613 CTGCCCTGGTGCTAGAGGC 62.398 68.421 0.00 7.66 44.13 4.70
6395 9478 2.906458 CTGCCCTGGTGCTAGAGG 59.094 66.667 0.00 0.00 0.00 3.69
6396 9479 1.980784 ATGCTGCCCTGGTGCTAGAG 61.981 60.000 0.00 0.37 0.00 2.43
6397 9480 0.690744 TATGCTGCCCTGGTGCTAGA 60.691 55.000 0.00 0.00 0.00 2.43
6398 9481 0.399454 ATATGCTGCCCTGGTGCTAG 59.601 55.000 0.00 0.00 0.00 3.42
6399 9482 0.846015 AATATGCTGCCCTGGTGCTA 59.154 50.000 0.00 0.00 0.00 3.49
6400 9483 0.754217 CAATATGCTGCCCTGGTGCT 60.754 55.000 0.00 0.00 0.00 4.40
6401 9484 1.039233 ACAATATGCTGCCCTGGTGC 61.039 55.000 0.00 0.00 0.00 5.01
6402 9485 0.742505 CACAATATGCTGCCCTGGTG 59.257 55.000 0.00 0.00 0.00 4.17
6403 9486 0.396139 CCACAATATGCTGCCCTGGT 60.396 55.000 0.00 0.00 0.00 4.00
6404 9487 0.106569 TCCACAATATGCTGCCCTGG 60.107 55.000 0.00 0.00 0.00 4.45
6405 9488 1.611977 CATCCACAATATGCTGCCCTG 59.388 52.381 0.00 0.00 0.00 4.45
6406 9489 1.991121 CATCCACAATATGCTGCCCT 58.009 50.000 0.00 0.00 0.00 5.19
6407 9490 0.316204 GCATCCACAATATGCTGCCC 59.684 55.000 0.00 0.00 45.05 5.36
6408 9491 3.879912 GCATCCACAATATGCTGCC 57.120 52.632 0.00 0.00 45.05 4.85
6412 9495 6.075762 TGAATTGTAGCATCCACAATATGC 57.924 37.500 1.46 0.00 43.94 3.14
6413 9496 7.012610 TCACTGAATTGTAGCATCCACAATATG 59.987 37.037 1.46 0.29 43.94 1.78
6414 9497 7.012704 GTCACTGAATTGTAGCATCCACAATAT 59.987 37.037 1.46 0.00 43.94 1.28
6415 9498 6.316140 GTCACTGAATTGTAGCATCCACAATA 59.684 38.462 1.46 0.00 43.94 1.90
6416 9499 5.124457 GTCACTGAATTGTAGCATCCACAAT 59.876 40.000 0.00 0.00 46.05 2.71
6417 9500 4.455533 GTCACTGAATTGTAGCATCCACAA 59.544 41.667 0.00 0.00 40.01 3.33
6418 9501 4.002982 GTCACTGAATTGTAGCATCCACA 58.997 43.478 0.00 0.00 0.00 4.17
6419 9502 4.256920 AGTCACTGAATTGTAGCATCCAC 58.743 43.478 0.00 0.00 0.00 4.02
6420 9503 4.507710 GAGTCACTGAATTGTAGCATCCA 58.492 43.478 0.00 0.00 0.00 3.41
6421 9504 3.553511 CGAGTCACTGAATTGTAGCATCC 59.446 47.826 0.00 0.00 0.00 3.51
6422 9505 4.032217 CACGAGTCACTGAATTGTAGCATC 59.968 45.833 0.00 0.00 0.00 3.91
6423 9506 3.928992 CACGAGTCACTGAATTGTAGCAT 59.071 43.478 0.00 0.00 0.00 3.79
6424 9507 3.317150 CACGAGTCACTGAATTGTAGCA 58.683 45.455 0.00 0.00 0.00 3.49
6425 9508 2.092838 GCACGAGTCACTGAATTGTAGC 59.907 50.000 0.00 3.17 0.00 3.58
6426 9509 2.668457 GGCACGAGTCACTGAATTGTAG 59.332 50.000 0.00 0.00 0.00 2.74
6427 9510 2.611971 GGGCACGAGTCACTGAATTGTA 60.612 50.000 0.00 0.00 0.00 2.41
6428 9511 1.512926 GGCACGAGTCACTGAATTGT 58.487 50.000 0.00 0.00 0.00 2.71
6429 9512 0.798776 GGGCACGAGTCACTGAATTG 59.201 55.000 0.00 0.00 0.00 2.32
6430 9513 0.687354 AGGGCACGAGTCACTGAATT 59.313 50.000 0.00 0.00 0.00 2.17
6431 9514 0.036952 CAGGGCACGAGTCACTGAAT 60.037 55.000 0.00 0.00 0.00 2.57
6432 9515 1.112916 TCAGGGCACGAGTCACTGAA 61.113 55.000 6.73 0.00 35.45 3.02
6433 9516 1.112916 TTCAGGGCACGAGTCACTGA 61.113 55.000 5.44 5.44 36.49 3.41
6434 9517 0.036952 ATTCAGGGCACGAGTCACTG 60.037 55.000 0.00 0.00 0.00 3.66
6435 9518 0.687354 AATTCAGGGCACGAGTCACT 59.313 50.000 0.00 0.00 0.00 3.41
6436 9519 0.798776 CAATTCAGGGCACGAGTCAC 59.201 55.000 0.00 0.00 0.00 3.67
6437 9520 0.396435 ACAATTCAGGGCACGAGTCA 59.604 50.000 0.00 0.00 0.00 3.41
6438 9521 2.271800 CTACAATTCAGGGCACGAGTC 58.728 52.381 0.00 0.00 0.00 3.36
6439 9522 1.066143 CCTACAATTCAGGGCACGAGT 60.066 52.381 0.00 0.00 0.00 4.18
6440 9523 1.066143 ACCTACAATTCAGGGCACGAG 60.066 52.381 7.40 0.00 37.51 4.18
6441 9524 0.981183 ACCTACAATTCAGGGCACGA 59.019 50.000 7.40 0.00 37.51 4.35
6442 9525 1.086696 CACCTACAATTCAGGGCACG 58.913 55.000 7.40 0.00 37.51 5.34
6443 9526 2.027192 TCTCACCTACAATTCAGGGCAC 60.027 50.000 7.40 0.00 37.51 5.01
6444 9527 2.027192 GTCTCACCTACAATTCAGGGCA 60.027 50.000 7.40 0.00 37.51 5.36
6445 9528 2.027192 TGTCTCACCTACAATTCAGGGC 60.027 50.000 7.40 0.00 37.51 5.19
6446 9529 3.981071 TGTCTCACCTACAATTCAGGG 57.019 47.619 7.40 0.00 37.51 4.45
6447 9530 5.525378 GCTTATGTCTCACCTACAATTCAGG 59.475 44.000 1.69 1.69 39.25 3.86
6448 9531 5.233050 CGCTTATGTCTCACCTACAATTCAG 59.767 44.000 0.00 0.00 0.00 3.02
6449 9532 5.109210 CGCTTATGTCTCACCTACAATTCA 58.891 41.667 0.00 0.00 0.00 2.57
6450 9533 4.508124 CCGCTTATGTCTCACCTACAATTC 59.492 45.833 0.00 0.00 0.00 2.17
6451 9534 4.081087 ACCGCTTATGTCTCACCTACAATT 60.081 41.667 0.00 0.00 0.00 2.32
6452 9535 3.451178 ACCGCTTATGTCTCACCTACAAT 59.549 43.478 0.00 0.00 0.00 2.71
6453 9536 2.829720 ACCGCTTATGTCTCACCTACAA 59.170 45.455 0.00 0.00 0.00 2.41
6454 9537 2.453521 ACCGCTTATGTCTCACCTACA 58.546 47.619 0.00 0.00 0.00 2.74
6455 9538 4.519730 AGATACCGCTTATGTCTCACCTAC 59.480 45.833 0.00 0.00 0.00 3.18
6456 9539 4.726583 AGATACCGCTTATGTCTCACCTA 58.273 43.478 0.00 0.00 0.00 3.08
6457 9540 3.567397 AGATACCGCTTATGTCTCACCT 58.433 45.455 0.00 0.00 0.00 4.00
6458 9541 4.051922 CAAGATACCGCTTATGTCTCACC 58.948 47.826 0.00 0.00 0.00 4.02
6459 9542 4.933330 TCAAGATACCGCTTATGTCTCAC 58.067 43.478 0.00 0.00 0.00 3.51
6460 9543 5.509670 CCATCAAGATACCGCTTATGTCTCA 60.510 44.000 0.00 0.00 0.00 3.27
6461 9544 4.926238 CCATCAAGATACCGCTTATGTCTC 59.074 45.833 0.00 0.00 0.00 3.36
6462 9545 4.800914 GCCATCAAGATACCGCTTATGTCT 60.801 45.833 0.00 0.00 0.00 3.41
6463 9546 3.433615 GCCATCAAGATACCGCTTATGTC 59.566 47.826 0.00 0.00 0.00 3.06
6464 9547 3.403038 GCCATCAAGATACCGCTTATGT 58.597 45.455 0.00 0.00 0.00 2.29
6465 9548 2.744202 GGCCATCAAGATACCGCTTATG 59.256 50.000 0.00 0.00 0.00 1.90
6466 9549 2.371841 TGGCCATCAAGATACCGCTTAT 59.628 45.455 0.00 0.00 0.00 1.73
6467 9550 1.765904 TGGCCATCAAGATACCGCTTA 59.234 47.619 0.00 0.00 0.00 3.09
6468 9551 0.546122 TGGCCATCAAGATACCGCTT 59.454 50.000 0.00 0.00 0.00 4.68
6469 9552 0.767375 ATGGCCATCAAGATACCGCT 59.233 50.000 14.09 0.00 0.00 5.52
6470 9553 0.877071 CATGGCCATCAAGATACCGC 59.123 55.000 17.61 0.00 0.00 5.68
6471 9554 1.527034 CCATGGCCATCAAGATACCG 58.473 55.000 17.61 0.44 0.00 4.02
6472 9555 1.251251 GCCATGGCCATCAAGATACC 58.749 55.000 27.24 0.00 34.56 2.73
6473 9556 0.877071 CGCCATGGCCATCAAGATAC 59.123 55.000 30.79 0.00 37.98 2.24
6474 9557 0.250858 CCGCCATGGCCATCAAGATA 60.251 55.000 30.79 0.00 37.98 1.98
6475 9558 1.529948 CCGCCATGGCCATCAAGAT 60.530 57.895 30.79 0.00 37.98 2.40
6476 9559 2.124193 CCGCCATGGCCATCAAGA 60.124 61.111 30.79 0.00 37.98 3.02
6477 9560 2.440796 ACCGCCATGGCCATCAAG 60.441 61.111 30.79 15.29 43.94 3.02
6478 9561 2.755064 CACCGCCATGGCCATCAA 60.755 61.111 30.79 0.00 43.94 2.57
6479 9562 4.818863 CCACCGCCATGGCCATCA 62.819 66.667 30.79 0.00 43.94 3.07
6480 9563 2.697147 ATACCACCGCCATGGCCATC 62.697 60.000 30.79 4.55 44.33 3.51
6481 9564 1.422977 TATACCACCGCCATGGCCAT 61.423 55.000 30.79 14.09 44.33 4.40
6482 9565 1.636769 TTATACCACCGCCATGGCCA 61.637 55.000 30.79 8.56 44.33 5.36
6483 9566 0.889186 CTTATACCACCGCCATGGCC 60.889 60.000 30.79 13.37 44.33 5.36
6484 9567 0.889186 CCTTATACCACCGCCATGGC 60.889 60.000 27.67 27.67 44.33 4.40
6485 9568 0.472471 ACCTTATACCACCGCCATGG 59.528 55.000 7.63 7.63 46.10 3.66
6486 9569 1.593196 CACCTTATACCACCGCCATG 58.407 55.000 0.00 0.00 0.00 3.66
6487 9570 0.472471 CCACCTTATACCACCGCCAT 59.528 55.000 0.00 0.00 0.00 4.40
6488 9571 1.628238 CCCACCTTATACCACCGCCA 61.628 60.000 0.00 0.00 0.00 5.69
6489 9572 1.147600 CCCACCTTATACCACCGCC 59.852 63.158 0.00 0.00 0.00 6.13
6490 9573 0.542805 TTCCCACCTTATACCACCGC 59.457 55.000 0.00 0.00 0.00 5.68
6491 9574 2.112998 TCTTCCCACCTTATACCACCG 58.887 52.381 0.00 0.00 0.00 4.94
6492 9575 2.841881 TGTCTTCCCACCTTATACCACC 59.158 50.000 0.00 0.00 0.00 4.61
6493 9576 4.409247 AGATGTCTTCCCACCTTATACCAC 59.591 45.833 0.00 0.00 0.00 4.16
6494 9577 4.631234 AGATGTCTTCCCACCTTATACCA 58.369 43.478 0.00 0.00 0.00 3.25
6495 9578 4.654262 TGAGATGTCTTCCCACCTTATACC 59.346 45.833 0.00 0.00 0.00 2.73
6496 9579 5.453480 GGTGAGATGTCTTCCCACCTTATAC 60.453 48.000 11.01 0.00 42.82 1.47
6497 9580 4.654262 GGTGAGATGTCTTCCCACCTTATA 59.346 45.833 11.01 0.00 42.82 0.98
6498 9581 3.456277 GGTGAGATGTCTTCCCACCTTAT 59.544 47.826 11.01 0.00 42.82 1.73
6499 9582 2.838202 GGTGAGATGTCTTCCCACCTTA 59.162 50.000 11.01 0.00 42.82 2.69
6500 9583 1.630878 GGTGAGATGTCTTCCCACCTT 59.369 52.381 11.01 0.00 42.82 3.50
6501 9584 1.280457 GGTGAGATGTCTTCCCACCT 58.720 55.000 11.01 0.00 42.82 4.00
6502 9585 0.108138 CGGTGAGATGTCTTCCCACC 60.108 60.000 8.82 8.82 42.72 4.61
6503 9586 0.895530 TCGGTGAGATGTCTTCCCAC 59.104 55.000 0.00 0.00 0.00 4.61
6504 9587 1.866015 ATCGGTGAGATGTCTTCCCA 58.134 50.000 0.00 0.00 38.36 4.37
6505 9588 2.939103 CAAATCGGTGAGATGTCTTCCC 59.061 50.000 0.00 0.00 40.02 3.97
6506 9589 2.352960 GCAAATCGGTGAGATGTCTTCC 59.647 50.000 0.00 0.00 40.02 3.46
6507 9590 3.063180 CAGCAAATCGGTGAGATGTCTTC 59.937 47.826 0.00 0.00 46.47 2.87
6508 9591 3.005554 CAGCAAATCGGTGAGATGTCTT 58.994 45.455 0.00 0.00 46.47 3.01
6509 9592 2.625737 CAGCAAATCGGTGAGATGTCT 58.374 47.619 0.00 0.00 46.47 3.41
6510 9593 1.667724 CCAGCAAATCGGTGAGATGTC 59.332 52.381 0.00 0.00 46.47 3.06
6511 9594 1.003580 ACCAGCAAATCGGTGAGATGT 59.996 47.619 0.00 0.00 46.47 3.06
6512 9595 1.742761 ACCAGCAAATCGGTGAGATG 58.257 50.000 0.00 0.00 46.47 2.90
6518 9601 1.228552 AAGGCACCAGCAAATCGGT 60.229 52.632 0.00 0.00 44.61 4.69
6519 9602 0.962356 AGAAGGCACCAGCAAATCGG 60.962 55.000 0.00 0.00 44.61 4.18
6520 9603 0.883833 AAGAAGGCACCAGCAAATCG 59.116 50.000 0.00 0.00 44.61 3.34
6521 9604 1.135575 CGAAGAAGGCACCAGCAAATC 60.136 52.381 0.00 0.00 44.61 2.17
6522 9605 0.883833 CGAAGAAGGCACCAGCAAAT 59.116 50.000 0.00 0.00 44.61 2.32
6523 9606 1.795170 GCGAAGAAGGCACCAGCAAA 61.795 55.000 0.00 0.00 44.61 3.68
6524 9607 2.260869 GCGAAGAAGGCACCAGCAA 61.261 57.895 0.00 0.00 44.61 3.91
6525 9608 2.669569 GCGAAGAAGGCACCAGCA 60.670 61.111 0.00 0.00 44.61 4.41
6526 9609 3.435186 GGCGAAGAAGGCACCAGC 61.435 66.667 0.00 0.00 41.10 4.85
6527 9610 1.580845 CTTGGCGAAGAAGGCACCAG 61.581 60.000 1.62 0.00 46.56 4.00
6528 9611 1.600636 CTTGGCGAAGAAGGCACCA 60.601 57.895 1.62 0.00 46.56 4.17
6529 9612 2.982744 GCTTGGCGAAGAAGGCACC 61.983 63.158 13.20 0.00 46.56 5.01
6530 9613 1.589716 ATGCTTGGCGAAGAAGGCAC 61.590 55.000 13.20 0.00 46.56 5.01
6531 9614 1.303561 ATGCTTGGCGAAGAAGGCA 60.304 52.632 13.20 4.04 45.22 4.75
6532 9615 1.138247 CATGCTTGGCGAAGAAGGC 59.862 57.895 13.20 0.00 37.19 4.35
6533 9616 0.677731 TCCATGCTTGGCGAAGAAGG 60.678 55.000 13.20 3.00 43.29 3.46
6534 9617 0.731417 CTCCATGCTTGGCGAAGAAG 59.269 55.000 13.20 1.36 43.29 2.85
6535 9618 1.308069 GCTCCATGCTTGGCGAAGAA 61.308 55.000 13.20 1.14 43.29 2.52
6536 9619 1.746615 GCTCCATGCTTGGCGAAGA 60.747 57.895 13.20 0.00 43.29 2.87
6537 9620 2.042259 TGCTCCATGCTTGGCGAAG 61.042 57.895 13.75 3.77 43.29 3.79
6538 9621 2.033911 TGCTCCATGCTTGGCGAA 59.966 55.556 13.75 0.00 43.29 4.70
6539 9622 2.747460 GTGCTCCATGCTTGGCGA 60.747 61.111 13.75 0.00 43.29 5.54
6540 9623 3.047718 CTGTGCTCCATGCTTGGCG 62.048 63.158 13.75 8.98 43.29 5.69
6541 9624 2.882876 CTGTGCTCCATGCTTGGC 59.117 61.111 13.75 3.99 43.29 4.52
6542 9625 2.707849 GGCTGTGCTCCATGCTTGG 61.708 63.158 12.41 12.41 45.15 3.61
6543 9626 1.934220 CTGGCTGTGCTCCATGCTTG 61.934 60.000 0.00 0.00 43.37 4.01
6544 9627 1.677966 CTGGCTGTGCTCCATGCTT 60.678 57.895 0.00 0.00 43.37 3.91
6545 9628 1.923006 ATCTGGCTGTGCTCCATGCT 61.923 55.000 0.00 0.00 43.37 3.79
6546 9629 1.453379 ATCTGGCTGTGCTCCATGC 60.453 57.895 0.00 0.00 43.25 4.06
6547 9630 1.725557 GCATCTGGCTGTGCTCCATG 61.726 60.000 10.17 0.00 40.25 3.66
6548 9631 1.453379 GCATCTGGCTGTGCTCCAT 60.453 57.895 10.17 0.00 40.25 3.41
6549 9632 2.045634 GCATCTGGCTGTGCTCCA 60.046 61.111 10.17 0.00 40.25 3.86
6550 9633 3.200593 CGCATCTGGCTGTGCTCC 61.201 66.667 13.65 0.00 41.67 4.70
6551 9634 2.125391 TCGCATCTGGCTGTGCTC 60.125 61.111 13.65 0.00 41.67 4.26
6552 9635 2.435586 GTCGCATCTGGCTGTGCT 60.436 61.111 13.65 0.00 41.67 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.