Multiple sequence alignment - TraesCS5D01G449400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G449400 chr5D 100.000 3213 0 0 1 3213 498405789 498402577 0.000000e+00 5934.0
1 TraesCS5D01G449400 chr5D 74.537 216 48 6 1446 1659 66668841 66668631 1.590000e-13 87.9
2 TraesCS5D01G449400 chr5B 86.167 2964 169 102 333 3213 617713035 617710230 0.000000e+00 2979.0
3 TraesCS5D01G449400 chr5B 91.617 167 8 5 1 162 617713326 617713161 3.230000e-55 226.0
4 TraesCS5D01G449400 chr5B 74.449 227 43 11 1448 1659 559778623 559778397 2.050000e-12 84.2
5 TraesCS5D01G449400 chr5B 73.973 219 50 7 1443 1659 64419316 64419529 7.390000e-12 82.4
6 TraesCS5D01G449400 chr5A 83.137 2882 180 127 541 3213 622559028 622556244 0.000000e+00 2348.0
7 TraesCS5D01G449400 chr5A 75.000 220 46 8 1443 1659 57563474 57563687 3.410000e-15 93.5
8 TraesCS5D01G449400 chr5A 74.009 227 44 10 1448 1659 575612944 575612718 9.560000e-11 78.7
9 TraesCS5D01G449400 chr5A 86.207 58 7 1 104 161 622559625 622559569 9.620000e-06 62.1
10 TraesCS5D01G449400 chr2D 89.286 84 7 2 1593 1675 633898374 633898456 1.580000e-18 104.0
11 TraesCS5D01G449400 chr2B 92.647 68 5 0 1593 1660 776914732 776914799 7.340000e-17 99.0
12 TraesCS5D01G449400 chr3D 100.000 29 0 0 1377 1405 279195080 279195052 2.000000e-03 54.7
13 TraesCS5D01G449400 chr3B 100.000 29 0 0 1377 1405 370938526 370938554 2.000000e-03 54.7
14 TraesCS5D01G449400 chr3A 100.000 29 0 0 1377 1405 359667992 359668020 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G449400 chr5D 498402577 498405789 3212 True 5934.00 5934 100.000 1 3213 1 chr5D.!!$R2 3212
1 TraesCS5D01G449400 chr5B 617710230 617713326 3096 True 1602.50 2979 88.892 1 3213 2 chr5B.!!$R2 3212
2 TraesCS5D01G449400 chr5A 622556244 622559625 3381 True 1205.05 2348 84.672 104 3213 2 chr5A.!!$R2 3109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 235 0.108138 GACGGTGGAAGAGGTCATGG 60.108 60.0 0.0 0.0 0.0 3.66 F
596 861 0.109689 GACCGTGAAGACCAGACTCG 60.110 60.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1559 0.042535 CGGTTAACATATGCACGGCG 60.043 55.0 4.8 4.8 0.0 6.46 R
2250 2705 0.544357 ATCCGTGTCCCAGTTCCTCA 60.544 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.577922 CATGCATATGCGTCCCTGC 59.422 57.895 19.61 0.00 45.83 4.85
73 78 3.077359 GCTCACAATGTTTGCCTAGACT 58.923 45.455 0.00 0.00 0.00 3.24
85 90 2.022195 GCCTAGACTGTCACCGTATCA 58.978 52.381 10.88 0.00 0.00 2.15
138 144 1.202758 TGCTTCATCGGGTCACAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
139 145 1.880027 GCTTCATCGGGTCACAAGTTT 59.120 47.619 0.00 0.00 0.00 2.66
146 152 0.179040 GGGTCACAAGTTTGGGTCGA 60.179 55.000 0.00 0.00 32.15 4.20
147 153 1.226746 GGTCACAAGTTTGGGTCGAG 58.773 55.000 0.00 0.00 32.15 4.04
156 162 1.795170 TTTGGGTCGAGCAAGCAAGC 61.795 55.000 17.59 0.00 0.00 4.01
162 168 2.908073 CGAGCAAGCAAGCGGGTTT 61.908 57.895 0.00 0.00 40.15 3.27
164 170 0.249447 GAGCAAGCAAGCGGGTTTTT 60.249 50.000 0.00 0.00 40.15 1.94
166 172 1.498043 GCAAGCAAGCGGGTTTTTGG 61.498 55.000 12.85 0.00 34.30 3.28
167 173 0.179086 CAAGCAAGCGGGTTTTTGGT 60.179 50.000 0.00 0.00 36.66 3.67
168 174 0.179086 AAGCAAGCGGGTTTTTGGTG 60.179 50.000 0.00 0.00 35.42 4.17
169 175 1.594021 GCAAGCGGGTTTTTGGTGG 60.594 57.895 0.00 0.00 0.00 4.61
170 176 1.594021 CAAGCGGGTTTTTGGTGGC 60.594 57.895 0.00 0.00 0.00 5.01
171 177 2.060980 AAGCGGGTTTTTGGTGGCA 61.061 52.632 0.00 0.00 0.00 4.92
172 178 1.406860 AAGCGGGTTTTTGGTGGCAT 61.407 50.000 0.00 0.00 0.00 4.40
173 179 1.667510 GCGGGTTTTTGGTGGCATG 60.668 57.895 0.00 0.00 0.00 4.06
174 180 1.745264 CGGGTTTTTGGTGGCATGT 59.255 52.632 0.00 0.00 0.00 3.21
176 182 1.871822 CGGGTTTTTGGTGGCATGTTC 60.872 52.381 0.00 0.00 0.00 3.18
177 183 1.496934 GGTTTTTGGTGGCATGTTCG 58.503 50.000 0.00 0.00 0.00 3.95
178 184 0.858583 GTTTTTGGTGGCATGTTCGC 59.141 50.000 0.00 0.00 0.00 4.70
185 191 3.047280 GGCATGTTCGCCGTGTCA 61.047 61.111 0.00 0.00 43.52 3.58
187 193 3.027170 GCATGTTCGCCGTGTCAGG 62.027 63.158 0.00 0.00 32.30 3.86
188 194 1.667830 CATGTTCGCCGTGTCAGGT 60.668 57.895 0.00 0.00 0.00 4.00
189 195 1.667830 ATGTTCGCCGTGTCAGGTG 60.668 57.895 0.00 0.00 42.87 4.00
190 196 3.041940 GTTCGCCGTGTCAGGTGG 61.042 66.667 0.00 0.00 41.86 4.61
192 198 3.220999 TTCGCCGTGTCAGGTGGAG 62.221 63.158 0.00 0.00 41.86 3.86
193 199 3.680786 CGCCGTGTCAGGTGGAGA 61.681 66.667 0.00 0.00 38.09 3.71
194 200 2.262915 GCCGTGTCAGGTGGAGAG 59.737 66.667 0.00 0.00 0.00 3.20
195 201 2.276116 GCCGTGTCAGGTGGAGAGA 61.276 63.158 0.00 0.00 0.00 3.10
197 203 0.244994 CCGTGTCAGGTGGAGAGAAG 59.755 60.000 0.00 0.00 0.00 2.85
198 204 1.248486 CGTGTCAGGTGGAGAGAAGA 58.752 55.000 0.00 0.00 0.00 2.87
199 205 1.201181 CGTGTCAGGTGGAGAGAAGAG 59.799 57.143 0.00 0.00 0.00 2.85
200 206 1.067213 GTGTCAGGTGGAGAGAAGAGC 60.067 57.143 0.00 0.00 0.00 4.09
201 207 0.534873 GTCAGGTGGAGAGAAGAGCC 59.465 60.000 0.00 0.00 0.00 4.70
202 208 0.115152 TCAGGTGGAGAGAAGAGCCA 59.885 55.000 0.00 0.00 0.00 4.75
203 209 0.979665 CAGGTGGAGAGAAGAGCCAA 59.020 55.000 0.00 0.00 32.68 4.52
205 211 0.251634 GGTGGAGAGAAGAGCCAAGG 59.748 60.000 0.00 0.00 32.68 3.61
206 212 0.392327 GTGGAGAGAAGAGCCAAGGC 60.392 60.000 2.02 2.02 42.33 4.35
207 213 1.223211 GGAGAGAAGAGCCAAGGCC 59.777 63.158 7.62 0.00 43.17 5.19
208 214 1.153469 GAGAGAAGAGCCAAGGCCG 60.153 63.158 7.62 0.00 43.17 6.13
209 215 2.124942 GAGAAGAGCCAAGGCCGG 60.125 66.667 7.62 0.00 43.17 6.13
210 216 3.689002 GAGAAGAGCCAAGGCCGGG 62.689 68.421 11.80 11.80 43.17 5.73
211 217 3.717294 GAAGAGCCAAGGCCGGGA 61.717 66.667 19.43 0.00 43.17 5.14
212 218 3.978571 GAAGAGCCAAGGCCGGGAC 62.979 68.421 19.43 11.97 43.17 4.46
225 231 2.979649 GGGACGGTGGAAGAGGTC 59.020 66.667 0.00 0.00 0.00 3.85
226 232 1.911766 GGGACGGTGGAAGAGGTCA 60.912 63.158 0.00 0.00 0.00 4.02
227 233 1.265454 GGGACGGTGGAAGAGGTCAT 61.265 60.000 0.00 0.00 0.00 3.06
229 235 0.108138 GACGGTGGAAGAGGTCATGG 60.108 60.000 0.00 0.00 0.00 3.66
255 278 1.574925 CATCGGCATCATCAGCTGC 59.425 57.895 9.47 0.00 38.26 5.25
268 291 0.252479 CAGCTGCCTCTCCATCAACT 59.748 55.000 0.00 0.00 0.00 3.16
279 302 3.882888 TCTCCATCAACTGTTTGAACCAC 59.117 43.478 0.00 0.00 45.01 4.16
281 304 2.287547 CCATCAACTGTTTGAACCACGG 60.288 50.000 0.00 0.00 45.01 4.94
289 312 4.701171 ACTGTTTGAACCACGGAAAGTAAA 59.299 37.500 0.00 0.00 0.00 2.01
290 313 5.183522 ACTGTTTGAACCACGGAAAGTAAAA 59.816 36.000 0.00 0.00 0.00 1.52
291 314 5.400703 TGTTTGAACCACGGAAAGTAAAAC 58.599 37.500 0.00 0.00 0.00 2.43
292 315 5.183522 TGTTTGAACCACGGAAAGTAAAACT 59.816 36.000 0.00 0.00 0.00 2.66
294 317 7.067251 TGTTTGAACCACGGAAAGTAAAACTAT 59.933 33.333 0.00 0.00 0.00 2.12
295 318 8.558700 GTTTGAACCACGGAAAGTAAAACTATA 58.441 33.333 0.00 0.00 0.00 1.31
321 344 6.142818 AGAGATCATTGTGTCTACTAGTGC 57.857 41.667 5.39 0.00 0.00 4.40
323 346 5.655488 AGATCATTGTGTCTACTAGTGCAC 58.345 41.667 9.40 9.40 0.00 4.57
324 347 5.420421 AGATCATTGTGTCTACTAGTGCACT 59.580 40.000 25.12 25.12 33.44 4.40
325 348 6.603599 AGATCATTGTGTCTACTAGTGCACTA 59.396 38.462 24.63 24.63 33.44 2.74
326 349 6.775594 TCATTGTGTCTACTAGTGCACTAT 57.224 37.500 26.22 17.81 33.44 2.12
327 350 7.875327 TCATTGTGTCTACTAGTGCACTATA 57.125 36.000 26.22 17.96 33.44 1.31
328 351 7.704271 TCATTGTGTCTACTAGTGCACTATAC 58.296 38.462 26.22 20.09 33.44 1.47
329 352 7.338449 TCATTGTGTCTACTAGTGCACTATACA 59.662 37.037 26.22 22.05 33.44 2.29
330 353 7.640597 TTGTGTCTACTAGTGCACTATACAT 57.359 36.000 26.22 14.50 33.44 2.29
362 385 4.038521 CGTCCTCGCATGCATCAT 57.961 55.556 19.57 0.00 0.00 2.45
372 563 3.189080 TCGCATGCATCATAATTACAGCC 59.811 43.478 19.57 0.00 0.00 4.85
424 616 1.196127 GCTGCCCAACAAAGTACGTAC 59.804 52.381 18.10 18.10 0.00 3.67
425 617 2.762745 CTGCCCAACAAAGTACGTACT 58.237 47.619 22.45 22.45 38.39 2.73
426 618 2.478894 CTGCCCAACAAAGTACGTACTG 59.521 50.000 28.00 19.37 36.50 2.74
439 631 1.071019 CGTACTGCTACGTGCCAGTG 61.071 60.000 24.42 11.26 40.83 3.66
447 639 0.466543 TACGTGCCAGTGTCACCTTT 59.533 50.000 0.00 0.00 0.00 3.11
484 749 7.954666 AACCCCGTACTAGTACAGTTATTTA 57.045 36.000 28.03 0.00 38.80 1.40
530 795 1.165270 ACAGTTAACTTGCCGGCATC 58.835 50.000 33.25 15.90 0.00 3.91
537 802 2.798501 CTTGCCGGCATCGTACGTG 61.799 63.158 33.25 13.53 33.95 4.49
593 858 0.663568 CGTGACCGTGAAGACCAGAC 60.664 60.000 0.00 0.00 0.00 3.51
594 859 0.674534 GTGACCGTGAAGACCAGACT 59.325 55.000 0.00 0.00 0.00 3.24
595 860 0.959553 TGACCGTGAAGACCAGACTC 59.040 55.000 0.00 0.00 0.00 3.36
596 861 0.109689 GACCGTGAAGACCAGACTCG 60.110 60.000 0.00 0.00 0.00 4.18
597 862 0.536687 ACCGTGAAGACCAGACTCGA 60.537 55.000 0.00 0.00 0.00 4.04
598 863 0.109689 CCGTGAAGACCAGACTCGAC 60.110 60.000 0.00 0.00 0.00 4.20
607 872 0.457851 CCAGACTCGACTCCATCCAC 59.542 60.000 0.00 0.00 0.00 4.02
614 879 1.448540 GACTCCATCCACACTGGCG 60.449 63.158 0.00 0.00 37.47 5.69
648 913 1.370293 CGTACGTACGTGTGCCACA 60.370 57.895 33.95 5.88 44.13 4.17
846 1127 2.813042 GAGCGTGTGAGAGCAGCC 60.813 66.667 0.00 0.00 35.48 4.85
847 1128 4.385405 AGCGTGTGAGAGCAGCCC 62.385 66.667 0.00 0.00 35.48 5.19
884 1172 4.421515 CTCCAGCCAGCCACCCAG 62.422 72.222 0.00 0.00 0.00 4.45
1025 1333 2.421424 GCACTTCTCATTTTCCAGCGAT 59.579 45.455 0.00 0.00 0.00 4.58
1029 1337 5.006386 ACTTCTCATTTTCCAGCGATCTTT 58.994 37.500 0.00 0.00 0.00 2.52
1261 1572 2.106074 CCACACGCCGTGCATATGT 61.106 57.895 18.59 0.00 44.91 2.29
1262 1573 1.643868 CCACACGCCGTGCATATGTT 61.644 55.000 18.59 0.00 44.91 2.71
1264 1575 1.395262 CACACGCCGTGCATATGTTAA 59.605 47.619 18.59 0.00 39.19 2.01
1266 1577 1.011333 ACGCCGTGCATATGTTAACC 58.989 50.000 4.29 0.00 0.00 2.85
1270 1581 0.924777 CGTGCATATGTTAACCGCGA 59.075 50.000 8.23 0.00 0.00 5.87
1274 1585 4.663140 CGTGCATATGTTAACCGCGATTAG 60.663 45.833 8.23 0.00 0.00 1.73
1276 1587 4.812091 TGCATATGTTAACCGCGATTAGTT 59.188 37.500 8.23 5.58 0.00 2.24
1277 1588 5.137403 GCATATGTTAACCGCGATTAGTTG 58.863 41.667 8.23 0.00 0.00 3.16
1278 1589 3.668596 ATGTTAACCGCGATTAGTTGC 57.331 42.857 8.23 1.80 0.00 4.17
1279 1590 2.690786 TGTTAACCGCGATTAGTTGCT 58.309 42.857 8.23 0.00 32.21 3.91
1280 1591 3.068560 TGTTAACCGCGATTAGTTGCTT 58.931 40.909 8.23 0.00 32.21 3.91
1283 1594 0.953471 ACCGCGATTAGTTGCTTGCA 60.953 50.000 8.23 0.00 32.21 4.08
1284 1595 0.247814 CCGCGATTAGTTGCTTGCAG 60.248 55.000 8.23 0.00 32.21 4.41
1286 1597 1.086696 GCGATTAGTTGCTTGCAGGA 58.913 50.000 0.00 0.00 0.00 3.86
1297 1626 1.964552 CTTGCAGGAGAGCTAATGGG 58.035 55.000 0.00 0.00 34.99 4.00
1298 1627 1.211457 CTTGCAGGAGAGCTAATGGGT 59.789 52.381 0.00 0.00 34.99 4.51
1300 1629 1.210478 TGCAGGAGAGCTAATGGGTTC 59.790 52.381 0.00 0.00 34.99 3.62
1301 1630 1.808133 GCAGGAGAGCTAATGGGTTCG 60.808 57.143 0.00 0.00 0.00 3.95
1303 1632 2.693591 CAGGAGAGCTAATGGGTTCGTA 59.306 50.000 0.00 0.00 0.00 3.43
1304 1633 3.322254 CAGGAGAGCTAATGGGTTCGTAT 59.678 47.826 0.00 0.00 0.00 3.06
1306 1635 3.060602 GAGAGCTAATGGGTTCGTATGC 58.939 50.000 0.00 0.00 0.00 3.14
1307 1636 2.434336 AGAGCTAATGGGTTCGTATGCA 59.566 45.455 0.00 0.00 0.00 3.96
1308 1637 3.071602 AGAGCTAATGGGTTCGTATGCAT 59.928 43.478 3.79 3.79 0.00 3.96
1309 1638 3.141398 AGCTAATGGGTTCGTATGCATG 58.859 45.455 10.16 0.00 0.00 4.06
1310 1639 3.138304 GCTAATGGGTTCGTATGCATGA 58.862 45.455 10.16 0.00 0.00 3.07
1311 1640 3.753272 GCTAATGGGTTCGTATGCATGAT 59.247 43.478 10.16 0.00 0.00 2.45
1312 1641 4.216257 GCTAATGGGTTCGTATGCATGATT 59.784 41.667 10.16 0.00 0.00 2.57
1318 1647 3.181497 GGTTCGTATGCATGATTTGTGCT 60.181 43.478 10.16 0.00 42.92 4.40
1319 1648 4.414852 GTTCGTATGCATGATTTGTGCTT 58.585 39.130 10.16 0.00 42.92 3.91
1411 1740 1.227002 GGCGGCGAAGGAGAGTAAG 60.227 63.158 12.98 0.00 0.00 2.34
1471 1800 4.408821 GTGAGCATGGACGGGGCA 62.409 66.667 0.00 0.00 0.00 5.36
1662 1991 2.125673 CCCGTGGGAGTAAGCACG 60.126 66.667 0.00 0.00 40.30 5.34
1677 2006 1.077501 CACGCCAACCTCCATCCAT 60.078 57.895 0.00 0.00 0.00 3.41
1705 2034 1.791662 CATACCAACCGACCAACGC 59.208 57.895 0.00 0.00 41.07 4.84
1732 2061 0.246360 TGGTGTGGATCTACGTGCTG 59.754 55.000 4.63 0.00 0.00 4.41
1735 2072 0.320050 TGTGGATCTACGTGCTGCAA 59.680 50.000 2.77 0.00 0.00 4.08
1736 2073 1.066215 TGTGGATCTACGTGCTGCAAT 60.066 47.619 2.77 0.00 0.00 3.56
1737 2074 2.167487 TGTGGATCTACGTGCTGCAATA 59.833 45.455 2.77 0.00 0.00 1.90
1738 2075 2.797156 GTGGATCTACGTGCTGCAATAG 59.203 50.000 2.77 9.79 0.00 1.73
1764 2101 4.156373 AGAACCTGAGTCTAACTAACGAGC 59.844 45.833 0.00 0.00 0.00 5.03
1851 2189 1.481240 CGAAGCACGATGATGACGAT 58.519 50.000 0.00 0.00 45.77 3.73
1854 2192 2.808523 AGCACGATGATGACGATGAT 57.191 45.000 0.00 0.00 34.70 2.45
1870 2208 3.865164 CGATGATGAAAAGGACACGATCA 59.135 43.478 0.00 0.00 0.00 2.92
1893 2239 4.516323 AGCACACATACATACATGAAGCA 58.484 39.130 0.00 0.00 0.00 3.91
1937 2285 2.408271 GTGGCACATGATCAGGAGAA 57.592 50.000 15.42 0.00 44.52 2.87
1942 2290 2.819115 CACATGATCAGGAGAAGGACG 58.181 52.381 15.42 0.00 0.00 4.79
2250 2705 9.310716 GTAGTTAATCTAATCTTTTGTACCGCT 57.689 33.333 0.00 0.00 0.00 5.52
2363 2825 2.745821 GCTTTGTGTCTGCTGATGATGA 59.254 45.455 0.00 0.00 0.00 2.92
2367 2829 1.657594 GTGTCTGCTGATGATGACACG 59.342 52.381 8.92 0.00 45.97 4.49
2509 2985 1.454201 GCTTTTCCCTTCTCCTTCCG 58.546 55.000 0.00 0.00 0.00 4.30
2596 3080 7.245604 CACATCGATCTGAATGAAATCAAACA 58.754 34.615 0.00 0.00 0.00 2.83
2597 3081 7.217636 CACATCGATCTGAATGAAATCAAACAC 59.782 37.037 0.00 0.00 0.00 3.32
2606 3090 6.705381 TGAATGAAATCAAACACAAACATCCC 59.295 34.615 0.00 0.00 0.00 3.85
2607 3091 5.604758 TGAAATCAAACACAAACATCCCA 57.395 34.783 0.00 0.00 0.00 4.37
2608 3092 6.172136 TGAAATCAAACACAAACATCCCAT 57.828 33.333 0.00 0.00 0.00 4.00
2610 3094 6.041865 TGAAATCAAACACAAACATCCCATCT 59.958 34.615 0.00 0.00 0.00 2.90
2611 3095 5.649782 ATCAAACACAAACATCCCATCTC 57.350 39.130 0.00 0.00 0.00 2.75
2612 3096 4.468713 TCAAACACAAACATCCCATCTCA 58.531 39.130 0.00 0.00 0.00 3.27
2613 3097 5.078949 TCAAACACAAACATCCCATCTCAT 58.921 37.500 0.00 0.00 0.00 2.90
2614 3098 5.183713 TCAAACACAAACATCCCATCTCATC 59.816 40.000 0.00 0.00 0.00 2.92
2615 3099 4.305539 ACACAAACATCCCATCTCATCA 57.694 40.909 0.00 0.00 0.00 3.07
2616 3100 4.267536 ACACAAACATCCCATCTCATCAG 58.732 43.478 0.00 0.00 0.00 2.90
2665 3163 7.580600 ACTCGTTTTTCTTTTGTTTTGCAAAT 58.419 26.923 13.65 0.00 45.38 2.32
2872 3398 1.000496 GTAGCTGCCCGATGTACTACC 60.000 57.143 0.00 0.00 0.00 3.18
2896 3422 6.338937 CCCAGTAAGTAACATTGTACTCCTC 58.661 44.000 0.00 0.00 33.05 3.71
2897 3423 6.154706 CCCAGTAAGTAACATTGTACTCCTCT 59.845 42.308 0.00 0.00 33.05 3.69
2898 3424 7.341256 CCCAGTAAGTAACATTGTACTCCTCTA 59.659 40.741 0.00 0.00 33.05 2.43
2901 3427 8.958506 AGTAAGTAACATTGTACTCCTCTACTG 58.041 37.037 0.00 0.00 33.05 2.74
2902 3428 7.778185 AAGTAACATTGTACTCCTCTACTGT 57.222 36.000 0.00 0.00 33.05 3.55
2920 3451 1.752498 TGTACTACACATGCCCGGTAG 59.248 52.381 0.00 10.93 40.19 3.18
2926 3457 1.202830 ACACATGCCCGGTAGAAAACA 60.203 47.619 0.00 0.00 0.00 2.83
2928 3459 2.095263 CACATGCCCGGTAGAAAACAAG 60.095 50.000 0.00 0.00 0.00 3.16
2929 3460 1.472480 CATGCCCGGTAGAAAACAAGG 59.528 52.381 0.00 0.00 0.00 3.61
2930 3461 0.250989 TGCCCGGTAGAAAACAAGGG 60.251 55.000 0.00 4.22 45.45 3.95
2931 3462 2.563297 CCCGGTAGAAAACAAGGGC 58.437 57.895 0.00 0.00 39.67 5.19
2932 3463 1.303091 CCCGGTAGAAAACAAGGGCG 61.303 60.000 0.00 0.00 39.67 6.13
2933 3464 1.500396 CGGTAGAAAACAAGGGCGC 59.500 57.895 0.00 0.00 0.00 6.53
2970 3509 6.940867 AGGGTAAGGTTGAACATTCTTCTTAC 59.059 38.462 0.00 5.12 35.94 2.34
3015 3554 1.739067 GGCACTAGACCCACATGAAC 58.261 55.000 0.00 0.00 0.00 3.18
3151 3699 3.238497 TCCACACCCCACAGACCG 61.238 66.667 0.00 0.00 0.00 4.79
3155 3703 3.625897 CACCCCACAGACCGCAGA 61.626 66.667 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.086067 CAGCCATACACAGACGCAGG 61.086 60.000 0.00 0.00 0.00 4.85
37 38 0.108662 TGAGCAGCCATACACAGACG 60.109 55.000 0.00 0.00 0.00 4.18
73 78 0.613572 TCCTGCCTGATACGGTGACA 60.614 55.000 0.00 0.00 0.00 3.58
85 90 2.671070 CACGGTCCAATCCTGCCT 59.329 61.111 0.00 0.00 0.00 4.75
138 144 2.260869 GCTTGCTTGCTCGACCCAA 61.261 57.895 0.00 0.00 0.00 4.12
139 145 2.669569 GCTTGCTTGCTCGACCCA 60.670 61.111 0.00 0.00 0.00 4.51
146 152 0.530431 CAAAAACCCGCTTGCTTGCT 60.530 50.000 0.00 0.00 0.00 3.91
147 153 1.498043 CCAAAAACCCGCTTGCTTGC 61.498 55.000 0.00 0.00 0.00 4.01
156 162 0.105778 AACATGCCACCAAAAACCCG 59.894 50.000 0.00 0.00 0.00 5.28
169 175 2.476051 CTGACACGGCGAACATGC 59.524 61.111 16.62 0.00 0.00 4.06
170 176 1.667830 ACCTGACACGGCGAACATG 60.668 57.895 16.62 3.21 0.00 3.21
171 177 1.667830 CACCTGACACGGCGAACAT 60.668 57.895 16.62 0.00 0.00 2.71
172 178 2.279851 CACCTGACACGGCGAACA 60.280 61.111 16.62 9.53 0.00 3.18
173 179 3.041940 CCACCTGACACGGCGAAC 61.042 66.667 16.62 4.75 0.00 3.95
174 180 3.220999 CTCCACCTGACACGGCGAA 62.221 63.158 16.62 0.00 0.00 4.70
176 182 3.633094 CTCTCCACCTGACACGGCG 62.633 68.421 4.80 4.80 0.00 6.46
177 183 1.816863 TTCTCTCCACCTGACACGGC 61.817 60.000 0.00 0.00 0.00 5.68
178 184 0.244994 CTTCTCTCCACCTGACACGG 59.755 60.000 0.00 0.00 0.00 4.94
179 185 1.201181 CTCTTCTCTCCACCTGACACG 59.799 57.143 0.00 0.00 0.00 4.49
180 186 1.067213 GCTCTTCTCTCCACCTGACAC 60.067 57.143 0.00 0.00 0.00 3.67
181 187 1.261480 GCTCTTCTCTCCACCTGACA 58.739 55.000 0.00 0.00 0.00 3.58
184 190 0.979665 TTGGCTCTTCTCTCCACCTG 59.020 55.000 0.00 0.00 0.00 4.00
185 191 1.274712 CTTGGCTCTTCTCTCCACCT 58.725 55.000 0.00 0.00 0.00 4.00
187 193 0.392327 GCCTTGGCTCTTCTCTCCAC 60.392 60.000 4.11 0.00 0.00 4.02
188 194 1.557269 GGCCTTGGCTCTTCTCTCCA 61.557 60.000 11.71 0.00 0.00 3.86
189 195 1.223211 GGCCTTGGCTCTTCTCTCC 59.777 63.158 11.71 0.00 0.00 3.71
190 196 1.153469 CGGCCTTGGCTCTTCTCTC 60.153 63.158 11.71 0.00 0.00 3.20
192 198 2.124942 CCGGCCTTGGCTCTTCTC 60.125 66.667 11.71 0.00 0.00 2.87
193 199 3.721706 CCCGGCCTTGGCTCTTCT 61.722 66.667 11.71 0.00 0.00 2.85
194 200 3.717294 TCCCGGCCTTGGCTCTTC 61.717 66.667 11.71 0.00 0.00 2.87
195 201 4.035102 GTCCCGGCCTTGGCTCTT 62.035 66.667 11.71 0.00 0.00 2.85
207 213 2.995574 ACCTCTTCCACCGTCCCG 60.996 66.667 0.00 0.00 0.00 5.14
208 214 1.265454 ATGACCTCTTCCACCGTCCC 61.265 60.000 0.00 0.00 0.00 4.46
209 215 0.108138 CATGACCTCTTCCACCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
210 216 0.108138 CCATGACCTCTTCCACCGTC 60.108 60.000 0.00 0.00 0.00 4.79
211 217 1.983224 CCATGACCTCTTCCACCGT 59.017 57.895 0.00 0.00 0.00 4.83
212 218 1.450312 GCCATGACCTCTTCCACCG 60.450 63.158 0.00 0.00 0.00 4.94
213 219 1.134371 GTAGCCATGACCTCTTCCACC 60.134 57.143 0.00 0.00 0.00 4.61
214 220 1.471676 CGTAGCCATGACCTCTTCCAC 60.472 57.143 0.00 0.00 0.00 4.02
215 221 0.824109 CGTAGCCATGACCTCTTCCA 59.176 55.000 0.00 0.00 0.00 3.53
216 222 0.824759 ACGTAGCCATGACCTCTTCC 59.175 55.000 0.00 0.00 0.00 3.46
218 224 0.824759 GGACGTAGCCATGACCTCTT 59.175 55.000 0.00 0.00 0.00 2.85
219 225 0.324368 TGGACGTAGCCATGACCTCT 60.324 55.000 0.00 0.00 31.66 3.69
220 226 0.753262 ATGGACGTAGCCATGACCTC 59.247 55.000 7.93 0.00 46.62 3.85
221 227 2.916355 ATGGACGTAGCCATGACCT 58.084 52.632 7.93 0.00 46.62 3.85
227 233 2.363711 GATGCCGATGGACGTAGCCA 62.364 60.000 0.00 0.00 43.23 4.75
229 235 0.319900 ATGATGCCGATGGACGTAGC 60.320 55.000 0.00 0.00 40.78 3.58
255 278 3.503748 GGTTCAAACAGTTGATGGAGAGG 59.496 47.826 0.00 0.00 43.29 3.69
268 291 5.183522 AGTTTTACTTTCCGTGGTTCAAACA 59.816 36.000 0.00 0.00 0.00 2.83
295 318 8.356657 GCACTAGTAGACACAATGATCTCTTAT 58.643 37.037 3.59 0.00 0.00 1.73
304 327 7.480810 TGTATAGTGCACTAGTAGACACAATG 58.519 38.462 29.05 5.25 32.87 2.82
306 329 7.480810 CATGTATAGTGCACTAGTAGACACAA 58.519 38.462 29.05 6.90 38.75 3.33
320 343 1.399343 CGCTGCATGCATGTATAGTGC 60.399 52.381 26.79 19.85 43.06 4.40
321 344 1.869132 ACGCTGCATGCATGTATAGTG 59.131 47.619 26.79 26.08 43.06 2.74
323 346 1.399343 GCACGCTGCATGCATGTATAG 60.399 52.381 26.79 21.54 44.26 1.31
324 347 0.587768 GCACGCTGCATGCATGTATA 59.412 50.000 26.79 13.26 44.26 1.47
325 348 1.357690 GCACGCTGCATGCATGTAT 59.642 52.632 26.79 6.05 44.26 2.29
326 349 2.793272 GCACGCTGCATGCATGTA 59.207 55.556 26.79 21.99 44.26 2.29
327 350 4.470170 CGCACGCTGCATGCATGT 62.470 61.111 26.79 19.63 45.36 3.21
360 383 7.448469 ACCCTGCTTAATTAGGCTGTAATTATG 59.552 37.037 19.03 4.50 31.75 1.90
361 384 7.526918 ACCCTGCTTAATTAGGCTGTAATTAT 58.473 34.615 19.03 0.18 31.75 1.28
362 385 6.906848 ACCCTGCTTAATTAGGCTGTAATTA 58.093 36.000 19.03 0.00 32.58 1.40
395 587 1.001641 GTTGGGCAGCTGATCACCT 60.002 57.895 20.43 0.00 0.00 4.00
403 595 0.179029 ACGTACTTTGTTGGGCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
404 596 1.196127 GTACGTACTTTGTTGGGCAGC 59.804 52.381 18.47 0.00 0.00 5.25
408 600 2.762745 AGCAGTACGTACTTTGTTGGG 58.237 47.619 25.35 13.28 33.46 4.12
426 618 2.027625 GGTGACACTGGCACGTAGC 61.028 63.158 8.99 0.00 44.65 3.58
506 771 1.802365 CCGGCAAGTTAACTGTACCAC 59.198 52.381 9.34 0.00 0.00 4.16
507 772 1.878948 GCCGGCAAGTTAACTGTACCA 60.879 52.381 24.80 0.00 0.00 3.25
508 773 0.800631 GCCGGCAAGTTAACTGTACC 59.199 55.000 24.80 10.00 0.00 3.34
511 776 1.165270 GATGCCGGCAAGTTAACTGT 58.835 50.000 36.33 14.18 0.00 3.55
524 789 2.277437 TACGCACGTACGATGCCG 60.277 61.111 24.41 21.74 40.09 5.69
545 810 1.655484 GGTCATGCATGTCACGATCA 58.345 50.000 25.43 1.24 0.00 2.92
548 813 1.013524 CACGGTCATGCATGTCACGA 61.014 55.000 31.03 12.65 0.00 4.35
576 841 0.959553 GAGTCTGGTCTTCACGGTCA 59.040 55.000 0.00 0.00 0.00 4.02
593 858 0.174389 CCAGTGTGGATGGAGTCGAG 59.826 60.000 0.00 0.00 40.96 4.04
594 859 1.888436 GCCAGTGTGGATGGAGTCGA 61.888 60.000 0.00 0.00 40.96 4.20
595 860 1.448540 GCCAGTGTGGATGGAGTCG 60.449 63.158 0.00 0.00 40.96 4.18
596 861 1.448540 CGCCAGTGTGGATGGAGTC 60.449 63.158 0.00 0.00 40.96 3.36
597 862 2.665000 CGCCAGTGTGGATGGAGT 59.335 61.111 0.00 0.00 40.96 3.85
598 863 2.124983 CCGCCAGTGTGGATGGAG 60.125 66.667 0.00 0.00 45.51 3.86
644 909 2.113139 GGTGTGGTGGGACTGTGG 59.887 66.667 0.00 0.00 0.00 4.17
815 1080 3.532155 GCTCGCGAGGACAGGGAT 61.532 66.667 35.10 0.00 0.00 3.85
903 1191 1.961180 ATATAGCGCGGGAGGATGGC 61.961 60.000 8.83 0.00 0.00 4.40
904 1192 1.399714 TATATAGCGCGGGAGGATGG 58.600 55.000 8.83 0.00 0.00 3.51
905 1193 2.864097 GCATATATAGCGCGGGAGGATG 60.864 54.545 8.83 4.32 0.00 3.51
906 1194 1.341531 GCATATATAGCGCGGGAGGAT 59.658 52.381 8.83 0.00 0.00 3.24
907 1195 0.744874 GCATATATAGCGCGGGAGGA 59.255 55.000 8.83 0.00 0.00 3.71
1029 1337 3.404707 CGTACGTCGCCGGCAAAA 61.405 61.111 28.98 8.35 38.78 2.44
1052 1360 3.164011 GACGGACGTGCGAACTCG 61.164 66.667 36.06 6.12 43.27 4.18
1053 1361 2.804090 GGACGGACGTGCGAACTC 60.804 66.667 36.06 21.95 0.00 3.01
1054 1362 2.927580 ATGGACGGACGTGCGAACT 61.928 57.895 36.06 14.24 39.39 3.01
1055 1363 2.431942 ATGGACGGACGTGCGAAC 60.432 61.111 36.06 25.46 39.39 3.95
1056 1364 2.431771 CATGGACGGACGTGCGAA 60.432 61.111 36.06 20.13 39.39 4.70
1060 1368 0.249073 GATCTCCATGGACGGACGTG 60.249 60.000 11.44 0.00 0.00 4.49
1217 1528 4.716003 GCTTACTTGGAAGCCGGT 57.284 55.556 1.90 0.00 45.08 5.28
1248 1559 0.042535 CGGTTAACATATGCACGGCG 60.043 55.000 4.80 4.80 0.00 6.46
1250 1561 0.042535 CGCGGTTAACATATGCACGG 60.043 55.000 8.10 3.39 0.00 4.94
1261 1572 2.159626 GCAAGCAACTAATCGCGGTTAA 60.160 45.455 13.65 0.00 0.00 2.01
1262 1573 1.395608 GCAAGCAACTAATCGCGGTTA 59.604 47.619 11.98 11.98 0.00 2.85
1264 1575 0.953471 TGCAAGCAACTAATCGCGGT 60.953 50.000 6.13 0.00 0.00 5.68
1266 1577 0.247814 CCTGCAAGCAACTAATCGCG 60.248 55.000 0.00 0.00 0.00 5.87
1270 1581 2.026449 AGCTCTCCTGCAAGCAACTAAT 60.026 45.455 10.57 0.00 41.06 1.73
1274 1585 1.813513 TTAGCTCTCCTGCAAGCAAC 58.186 50.000 10.57 0.00 41.06 4.17
1276 1587 1.407851 CCATTAGCTCTCCTGCAAGCA 60.408 52.381 10.57 0.00 41.06 3.91
1277 1588 1.307097 CCATTAGCTCTCCTGCAAGC 58.693 55.000 0.00 0.00 38.84 4.01
1278 1589 1.211457 ACCCATTAGCTCTCCTGCAAG 59.789 52.381 0.00 0.00 34.99 4.01
1279 1590 1.289160 ACCCATTAGCTCTCCTGCAA 58.711 50.000 0.00 0.00 34.99 4.08
1280 1591 1.210478 GAACCCATTAGCTCTCCTGCA 59.790 52.381 0.00 0.00 34.99 4.41
1283 1594 1.867363 ACGAACCCATTAGCTCTCCT 58.133 50.000 0.00 0.00 0.00 3.69
1284 1595 3.654414 CATACGAACCCATTAGCTCTCC 58.346 50.000 0.00 0.00 0.00 3.71
1286 1597 2.434336 TGCATACGAACCCATTAGCTCT 59.566 45.455 0.00 0.00 0.00 4.09
1297 1626 4.019919 AGCACAAATCATGCATACGAAC 57.980 40.909 0.00 0.00 45.92 3.95
1298 1627 4.413969 CAAGCACAAATCATGCATACGAA 58.586 39.130 0.00 0.00 45.92 3.85
1300 1629 2.532723 GCAAGCACAAATCATGCATACG 59.467 45.455 0.00 0.00 45.92 3.06
1301 1630 3.513662 TGCAAGCACAAATCATGCATAC 58.486 40.909 0.00 0.00 45.92 2.39
1303 1632 2.616960 CTGCAAGCACAAATCATGCAT 58.383 42.857 0.00 0.00 45.03 3.96
1304 1633 1.337354 CCTGCAAGCACAAATCATGCA 60.337 47.619 0.00 0.00 45.92 3.96
1306 1635 1.274167 ACCCTGCAAGCACAAATCATG 59.726 47.619 0.00 0.00 0.00 3.07
1307 1636 1.636148 ACCCTGCAAGCACAAATCAT 58.364 45.000 0.00 0.00 0.00 2.45
1308 1637 1.340889 GAACCCTGCAAGCACAAATCA 59.659 47.619 0.00 0.00 0.00 2.57
1309 1638 1.340889 TGAACCCTGCAAGCACAAATC 59.659 47.619 0.00 0.00 0.00 2.17
1310 1639 1.342174 CTGAACCCTGCAAGCACAAAT 59.658 47.619 0.00 0.00 0.00 2.32
1311 1640 0.746063 CTGAACCCTGCAAGCACAAA 59.254 50.000 0.00 0.00 0.00 2.83
1312 1641 1.108727 CCTGAACCCTGCAAGCACAA 61.109 55.000 0.00 0.00 0.00 3.33
1318 1647 0.754957 CAACCACCTGAACCCTGCAA 60.755 55.000 0.00 0.00 0.00 4.08
1319 1648 1.152777 CAACCACCTGAACCCTGCA 60.153 57.895 0.00 0.00 0.00 4.41
1441 1770 0.888619 TGCTCACCTTCACGTAGAGG 59.111 55.000 13.30 13.30 0.00 3.69
1444 1773 1.204704 TCCATGCTCACCTTCACGTAG 59.795 52.381 0.00 0.00 0.00 3.51
1603 1932 1.153881 GCCGTCCTTGTCCTCGTAC 60.154 63.158 0.00 0.00 0.00 3.67
1662 1991 3.297134 TTAAGATGGATGGAGGTTGGC 57.703 47.619 0.00 0.00 0.00 4.52
1677 2006 4.396790 GGTCGGTTGGTATGCAAATTAAGA 59.603 41.667 0.00 0.00 0.00 2.10
1705 2034 2.698855 AGATCCACACCAAAGATCGG 57.301 50.000 0.00 0.00 41.06 4.18
1732 2061 4.664150 AGACTCAGGTTCTAGCTATTGC 57.336 45.455 0.00 0.00 40.05 3.56
1735 2072 7.227116 CGTTAGTTAGACTCAGGTTCTAGCTAT 59.773 40.741 0.00 0.00 32.57 2.97
1736 2073 6.538021 CGTTAGTTAGACTCAGGTTCTAGCTA 59.462 42.308 0.00 0.00 31.65 3.32
1737 2074 5.354792 CGTTAGTTAGACTCAGGTTCTAGCT 59.645 44.000 0.00 0.00 33.34 3.32
1738 2075 5.353678 TCGTTAGTTAGACTCAGGTTCTAGC 59.646 44.000 0.00 0.00 0.00 3.42
1764 2101 0.859232 CAGAACCAGACGAACAACCG 59.141 55.000 0.00 0.00 0.00 4.44
1851 2189 3.436704 GCTTGATCGTGTCCTTTTCATCA 59.563 43.478 0.00 0.00 0.00 3.07
1854 2192 2.548057 GTGCTTGATCGTGTCCTTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
1870 2208 4.943093 TGCTTCATGTATGTATGTGTGCTT 59.057 37.500 0.00 0.00 0.00 3.91
1893 2239 3.434167 CCGGTTTCCATCATCTCCAGATT 60.434 47.826 0.00 0.00 31.21 2.40
1930 2278 2.811317 GCGTGCGTCCTTCTCCTG 60.811 66.667 0.00 0.00 0.00 3.86
1942 2290 3.896133 CATCTGGCCCATGCGTGC 61.896 66.667 0.00 0.00 38.85 5.34
2160 2594 2.610727 GCCTGAACCTCTGACTGTACAC 60.611 54.545 0.00 0.00 0.00 2.90
2250 2705 0.544357 ATCCGTGTCCCAGTTCCTCA 60.544 55.000 0.00 0.00 0.00 3.86
2333 2788 5.042593 CAGCAGACACAAAGCAAAAATGTA 58.957 37.500 0.00 0.00 0.00 2.29
2335 2790 4.114073 TCAGCAGACACAAAGCAAAAATG 58.886 39.130 0.00 0.00 0.00 2.32
2336 2791 4.389890 TCAGCAGACACAAAGCAAAAAT 57.610 36.364 0.00 0.00 0.00 1.82
2337 2792 3.865011 TCAGCAGACACAAAGCAAAAA 57.135 38.095 0.00 0.00 0.00 1.94
2338 2793 3.380954 TCATCAGCAGACACAAAGCAAAA 59.619 39.130 0.00 0.00 0.00 2.44
2363 2825 2.753452 ACCAGTTCGATATGACTCGTGT 59.247 45.455 0.00 0.00 39.62 4.49
2367 2829 4.338682 ACCACTACCAGTTCGATATGACTC 59.661 45.833 0.00 0.00 0.00 3.36
2374 2836 1.275291 CACCACCACTACCAGTTCGAT 59.725 52.381 0.00 0.00 0.00 3.59
2509 2985 4.893829 AAAGAGAAGGGAGAAGTGGTAC 57.106 45.455 0.00 0.00 0.00 3.34
2596 3080 3.285484 GCTGATGAGATGGGATGTTTGT 58.715 45.455 0.00 0.00 0.00 2.83
2597 3081 2.289820 CGCTGATGAGATGGGATGTTTG 59.710 50.000 0.00 0.00 0.00 2.93
2606 3090 0.028110 TCGTCGTCGCTGATGAGATG 59.972 55.000 0.00 0.00 36.96 2.90
2607 3091 0.947960 ATCGTCGTCGCTGATGAGAT 59.052 50.000 0.00 4.71 37.32 2.75
2608 3092 0.733150 AATCGTCGTCGCTGATGAGA 59.267 50.000 0.00 3.04 37.32 3.27
2610 3094 1.132453 AGAAATCGTCGTCGCTGATGA 59.868 47.619 0.00 1.85 38.21 2.92
2611 3095 1.253800 CAGAAATCGTCGTCGCTGATG 59.746 52.381 0.00 0.00 36.96 3.07
2612 3096 1.550065 CAGAAATCGTCGTCGCTGAT 58.450 50.000 0.00 0.00 36.96 2.90
2613 3097 1.071019 GCAGAAATCGTCGTCGCTGA 61.071 55.000 10.43 0.00 36.96 4.26
2614 3098 1.341802 GCAGAAATCGTCGTCGCTG 59.658 57.895 0.00 0.33 36.96 5.18
2615 3099 1.805945 GGCAGAAATCGTCGTCGCT 60.806 57.895 0.00 0.00 36.96 4.93
2616 3100 1.623081 TTGGCAGAAATCGTCGTCGC 61.623 55.000 0.00 0.00 36.96 5.19
2665 3163 2.088423 GGGATTTGTGCGTGTTATCCA 58.912 47.619 0.00 0.00 37.17 3.41
2710 3208 2.105466 GCGACTCCTCTACGTCCGT 61.105 63.158 0.00 0.00 0.00 4.69
2840 3340 1.202533 GGCAGCTACGCTTCCTTATCA 60.203 52.381 0.00 0.00 38.84 2.15
2872 3398 6.154706 AGAGGAGTACAATGTTACTTACTGGG 59.845 42.308 0.00 0.00 0.00 4.45
2896 3422 2.223735 CCGGGCATGTGTAGTACAGTAG 60.224 54.545 2.39 0.00 43.80 2.57
2897 3423 1.752498 CCGGGCATGTGTAGTACAGTA 59.248 52.381 2.39 0.00 43.80 2.74
2898 3424 0.535335 CCGGGCATGTGTAGTACAGT 59.465 55.000 2.39 0.00 43.80 3.55
2901 3427 2.026641 TCTACCGGGCATGTGTAGTAC 58.973 52.381 6.32 0.00 34.83 2.73
2902 3428 2.440517 TCTACCGGGCATGTGTAGTA 57.559 50.000 6.32 0.00 34.83 1.82
2920 3451 2.061028 CAATCAAGCGCCCTTGTTTTC 58.939 47.619 10.78 0.00 46.74 2.29
2932 3463 1.936547 CTTACCCTCTCGCAATCAAGC 59.063 52.381 0.00 0.00 0.00 4.01
2933 3464 2.093447 ACCTTACCCTCTCGCAATCAAG 60.093 50.000 0.00 0.00 0.00 3.02
3151 3699 2.287308 CGAGTATGGTCTGCTAGTCTGC 60.287 54.545 0.00 0.00 0.00 4.26
3155 3703 1.033574 GCCGAGTATGGTCTGCTAGT 58.966 55.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.