Multiple sequence alignment - TraesCS5D01G449300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G449300 chr5D 100.000 7283 0 0 1 7283 498395982 498403264 0.000000e+00 13450.0
1 TraesCS5D01G449300 chr5D 97.275 367 10 0 5209 5575 310693250 310693616 2.230000e-174 623.0
2 TraesCS5D01G449300 chr5D 95.442 373 9 1 5210 5574 117875847 117875475 8.140000e-164 588.0
3 TraesCS5D01G449300 chr5B 95.584 2219 72 10 2119 4320 617706415 617708624 0.000000e+00 3531.0
4 TraesCS5D01G449300 chr5B 89.534 1567 61 32 5777 7283 617709392 617710915 0.000000e+00 1890.0
5 TraesCS5D01G449300 chr5B 95.769 780 28 3 4433 5209 617708622 617709399 0.000000e+00 1253.0
6 TraesCS5D01G449300 chr5B 91.335 704 34 6 1422 2125 617705595 617706271 0.000000e+00 937.0
7 TraesCS5D01G449300 chr5B 84.720 661 84 9 201 845 617704268 617704927 0.000000e+00 645.0
8 TraesCS5D01G449300 chr5B 91.914 371 21 6 887 1250 617704927 617705295 1.810000e-140 510.0
9 TraesCS5D01G449300 chr5B 81.579 342 49 7 5777 6113 617709208 617709540 3.350000e-68 270.0
10 TraesCS5D01G449300 chr5B 91.803 122 10 0 1299 1420 617705387 617705508 3.490000e-38 171.0
11 TraesCS5D01G449300 chr5B 78.313 166 20 10 5777 5926 617709574 617709739 7.780000e-15 93.5
12 TraesCS5D01G449300 chr5A 93.410 1821 86 18 2522 4320 622553185 622554993 0.000000e+00 2667.0
13 TraesCS5D01G449300 chr5A 85.824 1432 100 40 5934 7283 622555560 622556970 0.000000e+00 1424.0
14 TraesCS5D01G449300 chr5A 84.712 1112 120 28 91 1194 622550596 622551665 0.000000e+00 1066.0
15 TraesCS5D01G449300 chr5A 91.810 757 41 13 4433 5171 622554991 622555744 0.000000e+00 1035.0
16 TraesCS5D01G449300 chr5A 87.842 732 66 10 1790 2503 622552156 622552882 0.000000e+00 837.0
17 TraesCS5D01G449300 chr7D 99.180 366 3 0 5209 5574 310987766 310988131 0.000000e+00 660.0
18 TraesCS5D01G449300 chr7D 98.588 354 5 0 5221 5574 111053456 111053809 1.720000e-175 627.0
19 TraesCS5D01G449300 chr7D 96.247 373 6 1 5210 5574 128915626 128915998 8.080000e-169 604.0
20 TraesCS5D01G449300 chr7D 100.000 138 0 0 5639 5776 128916003 128916140 9.380000e-64 255.0
21 TraesCS5D01G449300 chr7D 99.281 139 1 0 5639 5777 310988136 310988274 1.210000e-62 252.0
22 TraesCS5D01G449300 chr7D 99.281 139 1 0 5639 5777 418615299 418615437 1.210000e-62 252.0
23 TraesCS5D01G449300 chr7D 95.238 126 6 0 4317 4442 55354567 55354692 4.460000e-47 200.0
24 TraesCS5D01G449300 chr4D 98.904 365 4 0 5210 5574 375134597 375134233 0.000000e+00 652.0
25 TraesCS5D01G449300 chr4D 97.067 375 3 1 5208 5574 508678755 508679129 6.200000e-175 625.0
26 TraesCS5D01G449300 chr4D 99.281 139 1 0 5639 5777 508679134 508679272 1.210000e-62 252.0
27 TraesCS5D01G449300 chr4D 94.400 125 7 0 4311 4435 15768035 15768159 7.460000e-45 193.0
28 TraesCS5D01G449300 chr2D 97.003 367 11 0 5208 5574 109701551 109701185 1.040000e-172 617.0
29 TraesCS5D01G449300 chr2D 98.592 142 2 0 5639 5780 109701180 109701039 1.210000e-62 252.0
30 TraesCS5D01G449300 chr2D 97.458 118 3 0 4319 4436 377306009 377306126 1.240000e-47 202.0
31 TraesCS5D01G449300 chr2D 96.667 120 4 0 4317 4436 579092347 579092466 4.460000e-47 200.0
32 TraesCS5D01G449300 chr1D 99.398 332 2 0 5243 5574 286380187 286380518 2.910000e-168 603.0
33 TraesCS5D01G449300 chr1D 100.000 66 0 0 5573 5638 254397460 254397525 9.920000e-24 122.0
34 TraesCS5D01G449300 chr2A 92.484 306 17 6 5272 5574 595023437 595023135 4.040000e-117 433.0
35 TraesCS5D01G449300 chr2A 99.286 140 1 0 5639 5778 595023130 595022991 3.370000e-63 254.0
36 TraesCS5D01G449300 chr7B 100.000 138 0 0 5639 5776 51077826 51077963 9.380000e-64 255.0
37 TraesCS5D01G449300 chr7B 97.917 144 3 0 5639 5782 730214424 730214281 4.360000e-62 250.0
38 TraesCS5D01G449300 chr6D 99.281 139 1 0 5639 5777 462416178 462416316 1.210000e-62 252.0
39 TraesCS5D01G449300 chr6D 94.488 127 7 0 4309 4435 9063564 9063690 5.760000e-46 196.0
40 TraesCS5D01G449300 chr6D 100.000 66 0 0 5573 5638 168255575 168255510 9.920000e-24 122.0
41 TraesCS5D01G449300 chr3D 98.305 118 2 0 4318 4435 337959626 337959509 2.660000e-49 207.0
42 TraesCS5D01G449300 chr3A 95.902 122 5 0 4318 4439 455781653 455781532 1.600000e-46 198.0
43 TraesCS5D01G449300 chr3A 94.488 127 7 0 4318 4444 41236506 41236380 5.760000e-46 196.0
44 TraesCS5D01G449300 chr6B 92.593 135 9 1 4305 4438 267021905 267021771 7.460000e-45 193.0
45 TraesCS5D01G449300 chrUn 100.000 66 0 0 5573 5638 93408982 93409047 9.920000e-24 122.0
46 TraesCS5D01G449300 chrUn 100.000 66 0 0 5573 5638 346595845 346595910 9.920000e-24 122.0
47 TraesCS5D01G449300 chrUn 100.000 66 0 0 5573 5638 372771004 372771069 9.920000e-24 122.0
48 TraesCS5D01G449300 chrUn 100.000 66 0 0 5573 5638 444245763 444245828 9.920000e-24 122.0
49 TraesCS5D01G449300 chr6A 100.000 66 0 0 5573 5638 260115631 260115696 9.920000e-24 122.0
50 TraesCS5D01G449300 chr4A 100.000 66 0 0 5573 5638 73810609 73810544 9.920000e-24 122.0
51 TraesCS5D01G449300 chr1A 100.000 66 0 0 5573 5638 554512897 554512832 9.920000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G449300 chr5D 498395982 498403264 7282 False 13450.000000 13450 100.000000 1 7283 1 chr5D.!!$F2 7282
1 TraesCS5D01G449300 chr5B 617704268 617710915 6647 False 1033.388889 3531 88.950111 201 7283 9 chr5B.!!$F1 7082
2 TraesCS5D01G449300 chr5A 622550596 622556970 6374 False 1405.800000 2667 88.719600 91 7283 5 chr5A.!!$F1 7192
3 TraesCS5D01G449300 chr7D 310987766 310988274 508 False 456.000000 660 99.230500 5209 5777 2 chr7D.!!$F5 568
4 TraesCS5D01G449300 chr7D 128915626 128916140 514 False 429.500000 604 98.123500 5210 5776 2 chr7D.!!$F4 566
5 TraesCS5D01G449300 chr4D 508678755 508679272 517 False 438.500000 625 98.174000 5208 5777 2 chr4D.!!$F2 569
6 TraesCS5D01G449300 chr2D 109701039 109701551 512 True 434.500000 617 97.797500 5208 5780 2 chr2D.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.036010 ATGCGAGGAAGTGTTGAGGG 60.036 55.0 0.00 0.00 0.00 4.30 F
179 181 0.106318 ATCCTGCATCTTCCTTGGGC 60.106 55.0 0.00 0.00 0.00 5.36 F
260 262 0.108329 GACCATTGTCGACCGTCCAT 60.108 55.0 14.12 0.00 0.00 3.41 F
854 884 0.185901 ATTCTACATGGGCGGGCAAT 59.814 50.0 3.27 0.00 0.00 3.56 F
1662 1858 0.252197 ACTCGGTTGCCCCAAGATAC 59.748 55.0 0.00 0.00 0.00 2.24 F
1701 1897 0.464373 CCGGTACTGCAGAATGGCAT 60.464 55.0 23.35 0.00 43.97 4.40 F
2503 2867 0.253044 TGATCAGGTAGGGCAAGTGC 59.747 55.0 0.00 0.00 41.14 4.40 F
4332 5009 0.172803 CCTTGTACTCCCTTCGTCCG 59.827 60.0 0.00 0.00 0.00 4.79 F
4431 5108 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
4544 5223 0.036022 AGAGAACCTGGTGCTTCAGC 59.964 55.0 9.19 0.00 42.50 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1689 0.034380 CGACCCAGAGTCCCAGACTA 60.034 60.0 0.00 0.00 43.53 2.59 R
1673 1869 0.599558 TGCAGTACCGGTGTCTGTAC 59.400 55.0 29.01 19.64 38.06 2.90 R
2212 2558 0.398318 GCTCCAACCAACCAGAGAGT 59.602 55.0 0.00 0.00 0.00 3.24 R
2462 2819 0.595095 GCCACACCAGCAAGAAGAAG 59.405 55.0 0.00 0.00 0.00 2.85 R
2463 2820 1.165907 CGCCACACCAGCAAGAAGAA 61.166 55.0 0.00 0.00 0.00 2.52 R
2931 3596 2.118313 TGAGCAACCCTCATGTCATG 57.882 50.0 6.47 6.47 45.44 3.07 R
4412 5089 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R
5163 5849 0.034863 AACCGTCCACCAACTTGTGT 60.035 50.0 0.00 0.00 34.35 3.72 R
5624 6326 0.093535 CACATACTTGCGTGTGCTCG 59.906 55.0 0.00 0.00 43.34 5.03 R
6473 7201 0.035739 TCTGTAAGACAAACGGGGGC 59.964 55.0 0.00 0.00 38.67 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.643978 CGCCCAAGCTAGCGCATC 61.644 66.667 11.47 0.00 46.50 3.91
37 38 2.514592 GCCCAAGCTAGCGCATCA 60.515 61.111 11.47 0.00 39.10 3.07
38 39 1.895707 GCCCAAGCTAGCGCATCAT 60.896 57.895 11.47 0.00 39.10 2.45
39 40 1.849976 GCCCAAGCTAGCGCATCATC 61.850 60.000 11.47 0.00 39.10 2.92
40 41 0.533531 CCCAAGCTAGCGCATCATCA 60.534 55.000 11.47 0.00 39.10 3.07
41 42 1.520494 CCAAGCTAGCGCATCATCAT 58.480 50.000 11.47 0.00 39.10 2.45
42 43 1.197036 CCAAGCTAGCGCATCATCATG 59.803 52.381 11.47 0.00 39.10 3.07
43 44 1.871676 CAAGCTAGCGCATCATCATGT 59.128 47.619 11.47 0.00 39.10 3.21
44 45 2.251409 AGCTAGCGCATCATCATGTT 57.749 45.000 11.47 0.00 39.10 2.71
45 46 1.871676 AGCTAGCGCATCATCATGTTG 59.128 47.619 11.47 0.00 39.10 3.33
46 47 1.069432 GCTAGCGCATCATCATGTTGG 60.069 52.381 11.47 0.00 35.78 3.77
47 48 0.946528 TAGCGCATCATCATGTTGGC 59.053 50.000 11.47 0.55 31.86 4.52
48 49 1.656263 GCGCATCATCATGTTGGCG 60.656 57.895 17.69 17.69 31.86 5.69
49 50 1.009335 CGCATCATCATGTTGGCGG 60.009 57.895 15.45 3.76 31.86 6.13
50 51 1.361271 GCATCATCATGTTGGCGGG 59.639 57.895 3.98 0.00 31.86 6.13
51 52 2.035421 CATCATCATGTTGGCGGGG 58.965 57.895 3.98 0.00 0.00 5.73
52 53 0.466007 CATCATCATGTTGGCGGGGA 60.466 55.000 3.98 0.00 0.00 4.81
53 54 0.179009 ATCATCATGTTGGCGGGGAG 60.179 55.000 3.98 0.00 0.00 4.30
54 55 1.224315 CATCATGTTGGCGGGGAGA 59.776 57.895 0.00 0.00 0.00 3.71
55 56 0.816825 CATCATGTTGGCGGGGAGAG 60.817 60.000 0.00 0.00 0.00 3.20
56 57 1.987807 ATCATGTTGGCGGGGAGAGG 61.988 60.000 0.00 0.00 0.00 3.69
57 58 3.411517 ATGTTGGCGGGGAGAGGG 61.412 66.667 0.00 0.00 0.00 4.30
58 59 4.974438 TGTTGGCGGGGAGAGGGT 62.974 66.667 0.00 0.00 0.00 4.34
59 60 4.410400 GTTGGCGGGGAGAGGGTG 62.410 72.222 0.00 0.00 0.00 4.61
64 65 3.322466 CGGGGAGAGGGTGCAACT 61.322 66.667 0.00 0.00 36.74 3.16
65 66 2.895424 CGGGGAGAGGGTGCAACTT 61.895 63.158 0.00 0.00 36.74 2.66
66 67 1.002011 GGGGAGAGGGTGCAACTTC 60.002 63.158 5.58 5.58 36.74 3.01
67 68 1.761174 GGGAGAGGGTGCAACTTCA 59.239 57.895 17.02 0.00 36.74 3.02
68 69 0.110486 GGGAGAGGGTGCAACTTCAA 59.890 55.000 17.02 0.00 36.74 2.69
69 70 1.478654 GGGAGAGGGTGCAACTTCAAA 60.479 52.381 17.02 0.00 36.74 2.69
70 71 2.306847 GGAGAGGGTGCAACTTCAAAA 58.693 47.619 17.02 0.00 36.74 2.44
71 72 2.893489 GGAGAGGGTGCAACTTCAAAAT 59.107 45.455 17.02 0.00 36.74 1.82
72 73 3.321968 GGAGAGGGTGCAACTTCAAAATT 59.678 43.478 17.02 0.00 36.74 1.82
73 74 4.202253 GGAGAGGGTGCAACTTCAAAATTT 60.202 41.667 17.02 0.00 36.74 1.82
74 75 4.948847 AGAGGGTGCAACTTCAAAATTTC 58.051 39.130 17.02 0.00 36.74 2.17
75 76 4.651045 AGAGGGTGCAACTTCAAAATTTCT 59.349 37.500 17.02 0.00 36.74 2.52
76 77 5.129320 AGAGGGTGCAACTTCAAAATTTCTT 59.871 36.000 17.02 0.00 36.74 2.52
77 78 5.359756 AGGGTGCAACTTCAAAATTTCTTC 58.640 37.500 0.00 0.00 36.74 2.87
78 79 4.511454 GGGTGCAACTTCAAAATTTCTTCC 59.489 41.667 0.00 0.00 36.74 3.46
79 80 5.115480 GGTGCAACTTCAAAATTTCTTCCA 58.885 37.500 0.00 0.00 36.74 3.53
80 81 5.759763 GGTGCAACTTCAAAATTTCTTCCAT 59.240 36.000 0.00 0.00 36.74 3.41
81 82 6.293027 GGTGCAACTTCAAAATTTCTTCCATG 60.293 38.462 0.00 0.00 36.74 3.66
82 83 5.236911 TGCAACTTCAAAATTTCTTCCATGC 59.763 36.000 0.00 0.40 0.00 4.06
83 84 5.334337 GCAACTTCAAAATTTCTTCCATGCC 60.334 40.000 0.00 0.00 0.00 4.40
84 85 5.549742 ACTTCAAAATTTCTTCCATGCCA 57.450 34.783 0.00 0.00 0.00 4.92
85 86 5.544650 ACTTCAAAATTTCTTCCATGCCAG 58.455 37.500 0.00 0.00 0.00 4.85
86 87 5.305128 ACTTCAAAATTTCTTCCATGCCAGA 59.695 36.000 0.00 0.00 0.00 3.86
87 88 6.013984 ACTTCAAAATTTCTTCCATGCCAGAT 60.014 34.615 0.00 0.00 0.00 2.90
88 89 5.726397 TCAAAATTTCTTCCATGCCAGATG 58.274 37.500 0.00 0.00 0.00 2.90
89 90 3.814005 AATTTCTTCCATGCCAGATGC 57.186 42.857 0.00 0.00 41.77 3.91
103 104 1.998315 CAGATGCGAGGAAGTGTTGAG 59.002 52.381 0.00 0.00 0.00 3.02
105 106 0.036010 ATGCGAGGAAGTGTTGAGGG 60.036 55.000 0.00 0.00 0.00 4.30
107 108 0.390472 GCGAGGAAGTGTTGAGGGAG 60.390 60.000 0.00 0.00 0.00 4.30
116 117 5.394773 GGAAGTGTTGAGGGAGTAGATCTTC 60.395 48.000 0.00 0.00 0.00 2.87
123 124 5.471424 TGAGGGAGTAGATCTTCATTCCAT 58.529 41.667 0.00 0.00 0.00 3.41
132 133 1.554617 TCTTCATTCCATGTGCCTCGA 59.445 47.619 0.00 0.00 0.00 4.04
135 136 0.392863 CATTCCATGTGCCTCGACCA 60.393 55.000 0.00 0.00 0.00 4.02
136 137 0.548031 ATTCCATGTGCCTCGACCAT 59.452 50.000 0.00 0.00 0.00 3.55
148 149 2.947652 CCTCGACCATTGAGCAATTCAT 59.052 45.455 0.00 0.00 35.27 2.57
151 152 4.129380 TCGACCATTGAGCAATTCATAGG 58.871 43.478 0.00 0.00 35.27 2.57
166 167 2.044806 ATAGGCCCGACACATCCTGC 62.045 60.000 0.00 0.00 0.00 4.85
179 181 0.106318 ATCCTGCATCTTCCTTGGGC 60.106 55.000 0.00 0.00 0.00 5.36
194 196 1.745232 TGGGCGACATGGATTTGTAC 58.255 50.000 0.00 0.00 0.00 2.90
197 199 2.210116 GGCGACATGGATTTGTACGAT 58.790 47.619 0.00 0.00 0.00 3.73
198 200 2.612212 GGCGACATGGATTTGTACGATT 59.388 45.455 0.00 0.00 0.00 3.34
208 210 1.548081 TTGTACGATTGGGGACTCGA 58.452 50.000 0.00 0.00 38.24 4.04
221 223 1.207089 GGACTCGACAACCATGGATCA 59.793 52.381 21.47 3.59 0.00 2.92
224 226 2.303022 ACTCGACAACCATGGATCACTT 59.697 45.455 21.47 0.00 0.00 3.16
249 251 6.604396 TCAAATATGAATGCTCTGACCATTGT 59.396 34.615 3.04 0.00 33.34 2.71
255 257 1.078759 GCTCTGACCATTGTCGACCG 61.079 60.000 14.12 1.13 44.86 4.79
260 262 0.108329 GACCATTGTCGACCGTCCAT 60.108 55.000 14.12 0.00 0.00 3.41
264 266 2.051423 CATTGTCGACCGTCCATATCG 58.949 52.381 14.12 0.00 37.20 2.92
278 280 3.074390 TCCATATCGGCCCATTCTTCAAT 59.926 43.478 0.00 0.00 33.14 2.57
290 292 5.070981 CCCATTCTTCAATAGCTCTAGACCA 59.929 44.000 0.00 0.00 0.00 4.02
296 298 7.756614 TCTTCAATAGCTCTAGACCATAGGTA 58.243 38.462 0.00 0.00 35.25 3.08
299 301 8.958060 TCAATAGCTCTAGACCATAGGTAATT 57.042 34.615 0.00 0.00 35.25 1.40
380 383 5.301805 CCACACCTAACCAAGTCTCAAAATT 59.698 40.000 0.00 0.00 0.00 1.82
388 391 9.965824 CTAACCAAGTCTCAAAATTTGTAACAT 57.034 29.630 5.56 0.00 0.00 2.71
399 402 8.243426 TCAAAATTTGTAACATATGGAGTCTGC 58.757 33.333 7.80 0.00 0.00 4.26
420 423 0.887387 TGGTTCTTACCCAAGTGCGC 60.887 55.000 0.00 0.00 44.35 6.09
483 486 1.667154 CGGCCGTCTCATCTCTCCAA 61.667 60.000 19.50 0.00 0.00 3.53
508 511 5.123820 TGAATTGACGCAAAAATAGAGAGGG 59.876 40.000 0.00 0.00 0.00 4.30
510 513 4.487714 TGACGCAAAAATAGAGAGGGAT 57.512 40.909 0.00 0.00 0.00 3.85
511 514 4.191544 TGACGCAAAAATAGAGAGGGATG 58.808 43.478 0.00 0.00 0.00 3.51
512 515 2.945668 ACGCAAAAATAGAGAGGGATGC 59.054 45.455 0.00 0.00 0.00 3.91
514 517 3.003068 CGCAAAAATAGAGAGGGATGCTG 59.997 47.826 0.00 0.00 0.00 4.41
515 518 4.202441 GCAAAAATAGAGAGGGATGCTGA 58.798 43.478 0.00 0.00 0.00 4.26
516 519 4.275443 GCAAAAATAGAGAGGGATGCTGAG 59.725 45.833 0.00 0.00 0.00 3.35
518 521 3.342926 AATAGAGAGGGATGCTGAGGT 57.657 47.619 0.00 0.00 0.00 3.85
519 522 2.079170 TAGAGAGGGATGCTGAGGTG 57.921 55.000 0.00 0.00 0.00 4.00
529 533 1.148273 GCTGAGGTGGGTTGACACA 59.852 57.895 0.00 0.00 43.08 3.72
537 541 1.546476 GTGGGTTGACACACCAAAACA 59.454 47.619 5.20 0.00 44.22 2.83
546 550 1.688197 CACACCAAAACATTGGAGCCT 59.312 47.619 14.18 0.00 44.82 4.58
578 582 3.243336 GACGCGAAGTCTTACATCAACT 58.757 45.455 15.93 0.00 46.13 3.16
582 586 4.201532 CGCGAAGTCTTACATCAACTTCAG 60.202 45.833 0.00 8.01 45.87 3.02
599 603 0.819582 CAGTATTTTGGCTGGGCAGG 59.180 55.000 0.00 0.00 0.00 4.85
618 623 1.087501 GCGAGGTCTCCAATCCAAAC 58.912 55.000 0.00 0.00 0.00 2.93
620 625 2.778299 CGAGGTCTCCAATCCAAACAA 58.222 47.619 0.00 0.00 0.00 2.83
623 628 2.176798 AGGTCTCCAATCCAAACAACCA 59.823 45.455 0.00 0.00 0.00 3.67
624 629 3.165071 GGTCTCCAATCCAAACAACCAT 58.835 45.455 0.00 0.00 0.00 3.55
625 630 3.056607 GGTCTCCAATCCAAACAACCATG 60.057 47.826 0.00 0.00 0.00 3.66
629 642 3.963374 TCCAATCCAAACAACCATGTGAA 59.037 39.130 0.00 0.00 40.46 3.18
646 659 2.035066 GTGAAACTCTGCCAAGCACAAT 59.965 45.455 0.00 0.00 33.79 2.71
654 667 1.000060 TGCCAAGCACAATCTCTTTGC 60.000 47.619 0.00 0.00 39.03 3.68
657 670 2.555325 CCAAGCACAATCTCTTTGCTGA 59.445 45.455 0.00 0.00 45.93 4.26
658 671 3.366070 CCAAGCACAATCTCTTTGCTGAG 60.366 47.826 0.00 0.00 45.93 3.35
659 672 3.137446 AGCACAATCTCTTTGCTGAGT 57.863 42.857 0.00 0.00 44.93 3.41
660 673 3.072944 AGCACAATCTCTTTGCTGAGTC 58.927 45.455 0.00 0.00 44.93 3.36
661 674 2.810274 GCACAATCTCTTTGCTGAGTCA 59.190 45.455 0.00 0.00 39.03 3.41
662 675 3.120269 GCACAATCTCTTTGCTGAGTCAG 60.120 47.826 16.21 16.21 39.03 3.51
697 724 7.651027 AGATCACCAGATAGGGAAAATTTTG 57.349 36.000 8.47 0.00 43.89 2.44
726 753 2.095415 TGACGTGTCACCATTCGAGTAG 60.095 50.000 0.00 0.00 34.14 2.57
755 782 2.897969 AGTTCTAGGTCACCACACGAAT 59.102 45.455 0.00 0.00 0.00 3.34
760 787 5.475719 TCTAGGTCACCACACGAATAAAAG 58.524 41.667 0.00 0.00 0.00 2.27
780 810 4.065321 AGAAACAGTTCTGAGTCACTGG 57.935 45.455 15.56 0.00 44.12 4.00
844 874 1.889105 AGGCCGCGCATTCTACATG 60.889 57.895 8.75 0.00 0.00 3.21
845 875 2.633657 GCCGCGCATTCTACATGG 59.366 61.111 8.75 0.00 0.00 3.66
846 876 2.896801 GCCGCGCATTCTACATGGG 61.897 63.158 8.75 0.00 35.41 4.00
851 881 2.555547 GCATTCTACATGGGCGGGC 61.556 63.158 0.00 0.00 0.00 6.13
852 882 1.152984 CATTCTACATGGGCGGGCA 60.153 57.895 3.27 0.00 0.00 5.36
853 883 0.751277 CATTCTACATGGGCGGGCAA 60.751 55.000 3.27 0.00 0.00 4.52
854 884 0.185901 ATTCTACATGGGCGGGCAAT 59.814 50.000 3.27 0.00 0.00 3.56
855 885 0.465460 TTCTACATGGGCGGGCAATC 60.465 55.000 3.27 0.00 0.00 2.67
856 886 1.149174 CTACATGGGCGGGCAATCT 59.851 57.895 3.27 0.00 0.00 2.40
857 887 0.886490 CTACATGGGCGGGCAATCTC 60.886 60.000 3.27 0.00 0.00 2.75
858 888 1.344953 TACATGGGCGGGCAATCTCT 61.345 55.000 3.27 0.00 0.00 3.10
859 889 1.895707 CATGGGCGGGCAATCTCTC 60.896 63.158 3.27 0.00 0.00 3.20
860 890 2.074948 ATGGGCGGGCAATCTCTCT 61.075 57.895 3.27 0.00 0.00 3.10
861 891 2.049627 ATGGGCGGGCAATCTCTCTC 62.050 60.000 3.27 0.00 0.00 3.20
862 892 2.439104 GGGCGGGCAATCTCTCTCT 61.439 63.158 3.27 0.00 0.00 3.10
863 893 1.227497 GGCGGGCAATCTCTCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
864 894 1.227497 GCGGGCAATCTCTCTCTGG 60.227 63.158 0.00 0.00 0.00 3.86
865 895 1.680522 GCGGGCAATCTCTCTCTGGA 61.681 60.000 0.00 0.00 0.00 3.86
892 922 1.077089 GCTGGCGAGTTAAGACCGAC 61.077 60.000 0.00 0.00 0.00 4.79
1116 1146 2.048127 GGCGCCGTCTTCAAGACT 60.048 61.111 12.58 0.00 42.92 3.24
1131 1161 0.322975 AGACTGCCACGCTCAAGAAT 59.677 50.000 0.00 0.00 0.00 2.40
1197 1227 1.080093 CTCGCTCGCCTGTGGTTAA 60.080 57.895 0.00 0.00 0.00 2.01
1198 1228 0.460284 CTCGCTCGCCTGTGGTTAAT 60.460 55.000 0.00 0.00 0.00 1.40
1199 1229 0.818938 TCGCTCGCCTGTGGTTAATA 59.181 50.000 0.00 0.00 0.00 0.98
1201 1231 1.593006 CGCTCGCCTGTGGTTAATAAG 59.407 52.381 0.00 0.00 0.00 1.73
1203 1233 1.593006 CTCGCCTGTGGTTAATAAGCG 59.407 52.381 0.00 0.00 43.20 4.68
1204 1234 1.647346 CGCCTGTGGTTAATAAGCGA 58.353 50.000 0.00 0.00 44.51 4.93
1206 1236 2.612212 CGCCTGTGGTTAATAAGCGATT 59.388 45.455 0.00 0.00 44.51 3.34
1221 1261 1.828832 CGATTAGTCGTGGAGTGCTC 58.171 55.000 0.00 0.00 42.78 4.26
1230 1270 0.801251 GTGGAGTGCTCATGCTTGTC 59.199 55.000 1.41 0.00 40.48 3.18
1231 1271 0.321919 TGGAGTGCTCATGCTTGTCC 60.322 55.000 1.41 0.00 40.48 4.02
1246 1286 2.997315 TCCTGGGTCGAGCAGTGG 60.997 66.667 17.59 14.19 0.00 4.00
1254 1308 2.000447 GGTCGAGCAGTGGTTGATTAC 59.000 52.381 15.17 3.72 0.00 1.89
1258 1312 3.745975 TCGAGCAGTGGTTGATTACAAAG 59.254 43.478 8.23 0.00 37.77 2.77
1260 1314 4.377431 CGAGCAGTGGTTGATTACAAAGTC 60.377 45.833 3.26 0.00 37.77 3.01
1261 1315 4.718961 AGCAGTGGTTGATTACAAAGTCT 58.281 39.130 0.00 0.00 37.77 3.24
1271 1325 8.296713 GGTTGATTACAAAGTCTGCTCAATTAA 58.703 33.333 0.00 0.00 37.77 1.40
1272 1326 9.334693 GTTGATTACAAAGTCTGCTCAATTAAG 57.665 33.333 0.00 0.00 37.77 1.85
1273 1327 8.621532 TGATTACAAAGTCTGCTCAATTAAGT 57.378 30.769 0.00 0.00 0.00 2.24
1274 1328 9.719355 TGATTACAAAGTCTGCTCAATTAAGTA 57.281 29.630 0.00 0.00 0.00 2.24
1277 1331 7.295952 ACAAAGTCTGCTCAATTAAGTATCG 57.704 36.000 0.00 0.00 0.00 2.92
1278 1332 6.313905 ACAAAGTCTGCTCAATTAAGTATCGG 59.686 38.462 0.00 0.00 0.00 4.18
1280 1334 5.978814 AGTCTGCTCAATTAAGTATCGGTT 58.021 37.500 0.00 0.00 0.00 4.44
1281 1335 5.812642 AGTCTGCTCAATTAAGTATCGGTTG 59.187 40.000 0.00 0.00 0.00 3.77
1283 1337 3.625764 TGCTCAATTAAGTATCGGTTGCC 59.374 43.478 0.00 0.00 0.00 4.52
1285 1339 3.547746 TCAATTAAGTATCGGTTGCCCC 58.452 45.455 0.00 0.00 0.00 5.80
1297 1351 3.089838 TGCCCCTGCACTTGCTAT 58.910 55.556 2.33 0.00 44.23 2.97
1306 1389 3.066342 CCTGCACTTGCTATCCTCATTTG 59.934 47.826 2.33 0.00 42.66 2.32
1326 1409 1.008538 CTTGCGGTTGGCTGTGTTC 60.009 57.895 0.00 0.00 44.05 3.18
1336 1419 3.357079 CTGTGTTCAGTGCCCGCC 61.357 66.667 0.00 0.00 36.97 6.13
1372 1463 2.478831 GCTTAGTGCTGTAGCTGGATC 58.521 52.381 5.38 0.00 42.66 3.36
1427 1608 6.538444 GTTGCTTGAGAACTGTATTTAGCTC 58.462 40.000 0.00 0.00 0.00 4.09
1477 1673 7.392953 TGTCAGGAATAACATTTGATTGCTGTA 59.607 33.333 9.56 0.26 46.09 2.74
1493 1689 5.435686 TGCTGTACTCCATTTGGAAGTAT 57.564 39.130 0.18 0.00 44.91 2.12
1529 1725 4.080582 TGGGTCGATGATGAGTGGTTTATT 60.081 41.667 0.00 0.00 0.00 1.40
1536 1732 7.990314 TCGATGATGAGTGGTTTATTTTATCCA 59.010 33.333 0.00 0.00 0.00 3.41
1594 1790 4.712337 AGTAGGATTTAGGTCACCACTCAG 59.288 45.833 0.00 0.00 0.00 3.35
1597 1793 2.839486 TTTAGGTCACCACTCAGCAG 57.161 50.000 0.00 0.00 0.00 4.24
1616 1812 3.005684 GCAGTGATGGTGGAAAATTCACA 59.994 43.478 0.00 0.00 39.27 3.58
1630 1826 9.258629 TGGAAAATTCACATCTATTCAAGGAAT 57.741 29.630 0.00 0.00 36.20 3.01
1631 1827 9.741647 GGAAAATTCACATCTATTCAAGGAATC 57.258 33.333 0.00 0.00 33.95 2.52
1656 1852 4.947147 GTGCACTCGGTTGCCCCA 62.947 66.667 10.32 0.00 42.25 4.96
1662 1858 0.252197 ACTCGGTTGCCCCAAGATAC 59.748 55.000 0.00 0.00 0.00 2.24
1665 1861 1.301954 GGTTGCCCCAAGATACGGT 59.698 57.895 0.00 0.00 0.00 4.83
1673 1869 2.027192 CCCCAAGATACGGTGATATGGG 60.027 54.545 13.71 13.71 44.53 4.00
1678 1874 5.470368 CAAGATACGGTGATATGGGTACAG 58.530 45.833 0.00 0.00 0.00 2.74
1692 1888 0.599558 GTACAGACACCGGTACTGCA 59.400 55.000 28.94 19.82 39.70 4.41
1694 1890 0.826256 ACAGACACCGGTACTGCAGA 60.826 55.000 28.94 0.48 35.38 4.26
1701 1897 0.464373 CCGGTACTGCAGAATGGCAT 60.464 55.000 23.35 0.00 43.97 4.40
1730 1926 7.642071 TTTCTTTCAAAAGTGCAGATATTGC 57.358 32.000 2.63 3.73 42.71 3.56
1742 1938 5.039480 GCAGATATTGCGATATGTTTGCT 57.961 39.130 11.36 0.00 44.09 3.91
1743 1939 5.084722 GCAGATATTGCGATATGTTTGCTC 58.915 41.667 11.36 0.00 44.09 4.26
1818 2014 7.770897 CAGGACAGTTTAGGAATGCTAATAAGT 59.229 37.037 0.00 0.00 0.00 2.24
1840 2036 8.524870 AAGTTGATAGAAACATGAAAATGCAC 57.475 30.769 0.00 0.00 32.21 4.57
1845 2041 8.453320 TGATAGAAACATGAAAATGCACTGTAG 58.547 33.333 0.00 0.00 0.00 2.74
1882 2078 1.266175 CTTCAGCCACTGCAACTTCAG 59.734 52.381 0.00 0.00 41.13 3.02
1915 2111 1.267121 GAAGAGTAGGGCCTGTCACA 58.733 55.000 18.53 0.00 0.00 3.58
2113 2311 2.092646 TGCCGGCACATCCTAAAATAGT 60.093 45.455 29.03 0.00 0.00 2.12
2115 2313 3.541632 CCGGCACATCCTAAAATAGTGT 58.458 45.455 0.00 0.00 32.99 3.55
2140 2485 7.279981 GTGAGGCATATACAACATTAGACAACA 59.720 37.037 0.00 0.00 0.00 3.33
2212 2558 2.971330 ACCATGGCCAAGAAAATGTTGA 59.029 40.909 10.96 0.00 0.00 3.18
2251 2597 0.750911 CTGGGAGGAAATGCAGGAGC 60.751 60.000 0.00 0.00 42.57 4.70
2270 2616 0.962356 CAGGAGGCGGTGCTCAAATT 60.962 55.000 0.00 0.00 0.00 1.82
2286 2632 0.681175 AATTTGTTGGGTGGAGCAGC 59.319 50.000 0.00 0.00 0.00 5.25
2342 2688 1.158466 TGGAGAGGGAGCACTGGAA 59.842 57.895 0.00 0.00 0.00 3.53
2347 2693 1.537397 AGGGAGCACTGGAAGCTGA 60.537 57.895 0.00 0.00 43.58 4.26
2363 2717 1.210478 GCTGACCTCCTTCCTTGCATA 59.790 52.381 0.00 0.00 0.00 3.14
2438 2795 0.969149 AGTGACGGTTCTCAGATGCA 59.031 50.000 0.00 0.00 0.00 3.96
2503 2867 0.253044 TGATCAGGTAGGGCAAGTGC 59.747 55.000 0.00 0.00 41.14 4.40
2556 3202 5.365619 GGTGTTCTGTATATAGTTGGGGTG 58.634 45.833 0.00 0.00 0.00 4.61
2582 3228 6.312180 GTGTAGGGTTTTTACGTATTCTGGAG 59.688 42.308 0.00 0.00 0.00 3.86
2645 3301 9.580916 CTTTGATACGTACATATTTGTGCATAC 57.419 33.333 0.00 0.00 38.26 2.39
2795 3460 2.888834 TGCTCAAAGCTTTCCCAAAC 57.111 45.000 9.23 0.00 42.97 2.93
2931 3596 7.604545 GCATATTTTATCTACAGGACCTTCCTC 59.395 40.741 0.00 0.00 45.66 3.71
3436 4104 9.855021 TTTCAGCTAAAGGTTATTTATCTTTGC 57.145 29.630 0.00 0.00 33.44 3.68
3704 4372 8.630917 TGTTGGCTAGATATCTACTGTCTAAAC 58.369 37.037 8.44 4.65 28.38 2.01
3966 4635 7.532571 ACCAATTAATGTTTAGTTCGGCTTAC 58.467 34.615 0.00 0.00 0.00 2.34
4140 4817 6.072008 CGATATTCCCATGGCAAATGTCATTA 60.072 38.462 22.86 1.80 38.49 1.90
4144 4821 4.961099 TCCCATGGCAAATGTCATTATCAA 59.039 37.500 6.09 0.00 38.49 2.57
4174 4851 1.072331 GAAGTCAAGGGACAAGGCTGA 59.928 52.381 0.00 0.00 46.80 4.26
4307 4984 2.746362 CACAGATTTTCTCAGCCTGGAC 59.254 50.000 0.00 0.00 0.00 4.02
4308 4985 2.641815 ACAGATTTTCTCAGCCTGGACT 59.358 45.455 0.00 0.00 0.00 3.85
4317 4994 1.347707 TCAGCCTGGACTGTAACCTTG 59.652 52.381 14.79 0.00 38.84 3.61
4318 4995 1.072331 CAGCCTGGACTGTAACCTTGT 59.928 52.381 0.00 0.00 32.78 3.16
4319 4996 2.301870 CAGCCTGGACTGTAACCTTGTA 59.698 50.000 0.00 0.00 32.78 2.41
4320 4997 2.302157 AGCCTGGACTGTAACCTTGTAC 59.698 50.000 0.00 0.00 0.00 2.90
4321 4998 2.302157 GCCTGGACTGTAACCTTGTACT 59.698 50.000 0.00 0.00 0.00 2.73
4322 4999 3.616802 GCCTGGACTGTAACCTTGTACTC 60.617 52.174 0.00 0.00 0.00 2.59
4323 5000 3.056035 CCTGGACTGTAACCTTGTACTCC 60.056 52.174 0.00 0.00 0.00 3.85
4324 5001 2.901839 TGGACTGTAACCTTGTACTCCC 59.098 50.000 0.00 0.00 0.00 4.30
4325 5002 3.171528 GGACTGTAACCTTGTACTCCCT 58.828 50.000 0.00 0.00 0.00 4.20
4326 5003 3.581770 GGACTGTAACCTTGTACTCCCTT 59.418 47.826 0.00 0.00 0.00 3.95
4327 5004 4.322574 GGACTGTAACCTTGTACTCCCTTC 60.323 50.000 0.00 0.00 0.00 3.46
4328 5005 3.257624 ACTGTAACCTTGTACTCCCTTCG 59.742 47.826 0.00 0.00 0.00 3.79
4329 5006 3.233507 TGTAACCTTGTACTCCCTTCGT 58.766 45.455 0.00 0.00 0.00 3.85
4330 5007 3.256631 TGTAACCTTGTACTCCCTTCGTC 59.743 47.826 0.00 0.00 0.00 4.20
4331 5008 1.264295 ACCTTGTACTCCCTTCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
4332 5009 0.172803 CCTTGTACTCCCTTCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
4333 5010 0.172803 CTTGTACTCCCTTCGTCCGG 59.827 60.000 0.00 0.00 0.00 5.14
4334 5011 0.251297 TTGTACTCCCTTCGTCCGGA 60.251 55.000 0.00 0.00 0.00 5.14
4335 5012 0.251297 TGTACTCCCTTCGTCCGGAA 60.251 55.000 5.23 0.00 0.00 4.30
4336 5013 0.890683 GTACTCCCTTCGTCCGGAAA 59.109 55.000 5.23 0.00 33.34 3.13
4337 5014 1.479730 GTACTCCCTTCGTCCGGAAAT 59.520 52.381 5.23 0.00 33.34 2.17
4338 5015 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
4339 5016 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
4340 5017 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
4341 5018 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
4342 5019 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
4343 5020 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
4344 5021 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
4345 5022 2.267188 TCGTCCGGAAATACTTGTCG 57.733 50.000 5.23 1.58 0.00 4.35
4346 5023 1.541147 TCGTCCGGAAATACTTGTCGT 59.459 47.619 5.23 0.00 0.00 4.34
4347 5024 2.746904 TCGTCCGGAAATACTTGTCGTA 59.253 45.455 5.23 0.00 0.00 3.43
4348 5025 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
4349 5026 3.181507 CGTCCGGAAATACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
4350 5027 4.672542 CGTCCGGAAATACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
4351 5028 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
4352 5029 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
4353 5030 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
4354 5031 5.006358 CCGGAAATACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
4355 5032 5.808540 CGGAAATACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
4356 5033 6.479001 CGGAAATACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
4357 5034 7.650504 CGGAAATACTTGTCGTAGAAATGGATA 59.349 37.037 0.00 0.00 39.69 2.59
4358 5035 8.762426 GGAAATACTTGTCGTAGAAATGGATAC 58.238 37.037 0.00 0.00 39.69 2.24
4407 5084 6.522625 ACATCTAGATACATCCATTCCTCG 57.477 41.667 4.54 0.00 0.00 4.63
4408 5085 5.420421 ACATCTAGATACATCCATTCCTCGG 59.580 44.000 4.54 0.00 0.00 4.63
4409 5086 5.256806 TCTAGATACATCCATTCCTCGGA 57.743 43.478 0.00 0.00 36.84 4.55
4410 5087 5.010933 TCTAGATACATCCATTCCTCGGAC 58.989 45.833 0.00 0.00 34.69 4.79
4411 5088 3.576861 AGATACATCCATTCCTCGGACA 58.423 45.455 0.00 0.00 34.69 4.02
4412 5089 3.967326 AGATACATCCATTCCTCGGACAA 59.033 43.478 0.00 0.00 34.69 3.18
4413 5090 2.698855 ACATCCATTCCTCGGACAAG 57.301 50.000 0.00 0.00 34.69 3.16
4414 5091 1.909302 ACATCCATTCCTCGGACAAGT 59.091 47.619 0.00 0.00 34.69 3.16
4415 5092 3.104512 ACATCCATTCCTCGGACAAGTA 58.895 45.455 0.00 0.00 34.69 2.24
4416 5093 3.711704 ACATCCATTCCTCGGACAAGTAT 59.288 43.478 0.00 0.00 34.69 2.12
4417 5094 4.164221 ACATCCATTCCTCGGACAAGTATT 59.836 41.667 0.00 0.00 34.69 1.89
4418 5095 4.837093 TCCATTCCTCGGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
4419 5096 4.766375 TCCATTCCTCGGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
4420 5097 3.877508 CCATTCCTCGGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
4426 5103 1.648504 GGACAAGTATTTCCGGACGG 58.351 55.000 1.83 3.96 0.00 4.79
4427 5104 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
4428 5105 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4429 5106 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4430 5107 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4431 5108 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4544 5223 0.036022 AGAGAACCTGGTGCTTCAGC 59.964 55.000 9.19 0.00 42.50 4.26
4611 5290 1.735920 CTGCACTGCGTCTCCAGTC 60.736 63.158 0.00 0.00 43.85 3.51
4614 5293 1.011451 GCACTGCGTCTCCAGTCTTC 61.011 60.000 0.00 0.00 43.85 2.87
4945 5624 6.489675 CATACATGCTTTAGCCTTTGTACAG 58.510 40.000 0.00 0.00 41.18 2.74
4948 5627 6.001460 ACATGCTTTAGCCTTTGTACAGTAA 58.999 36.000 0.00 0.00 41.18 2.24
5104 5790 7.549839 ACATGAAGATAAATTTGTCCACATGG 58.450 34.615 30.58 21.70 37.05 3.66
5105 5791 7.178983 ACATGAAGATAAATTTGTCCACATGGT 59.821 33.333 30.58 22.05 37.05 3.55
5106 5792 6.923012 TGAAGATAAATTTGTCCACATGGTG 58.077 36.000 10.94 0.00 36.34 4.17
5162 5848 9.062524 TGTAAGTTTGTTATGCTTGACTATTGT 57.937 29.630 0.00 0.00 0.00 2.71
5185 5871 2.683867 CACAAGTTGGTGGACGGTTTTA 59.316 45.455 7.96 0.00 35.13 1.52
5190 5876 3.075884 GTTGGTGGACGGTTTTATAGCA 58.924 45.455 0.00 0.00 0.00 3.49
5574 6276 1.070601 TGTGCTCTTCTGCTGCTGTAA 59.929 47.619 0.00 0.00 0.00 2.41
5576 6278 2.159234 GTGCTCTTCTGCTGCTGTAAAG 59.841 50.000 0.00 1.58 0.00 1.85
5577 6279 1.736681 GCTCTTCTGCTGCTGTAAAGG 59.263 52.381 0.00 0.00 0.00 3.11
5578 6280 2.613977 GCTCTTCTGCTGCTGTAAAGGA 60.614 50.000 0.00 0.00 0.00 3.36
5579 6281 3.260740 CTCTTCTGCTGCTGTAAAGGAG 58.739 50.000 0.00 0.00 34.65 3.69
5580 6282 2.899900 TCTTCTGCTGCTGTAAAGGAGA 59.100 45.455 5.46 0.00 39.98 3.71
5581 6283 3.324846 TCTTCTGCTGCTGTAAAGGAGAA 59.675 43.478 5.46 7.11 46.10 2.87
5582 6284 3.988976 TCTGCTGCTGTAAAGGAGAAT 57.011 42.857 5.46 0.00 38.94 2.40
5583 6285 5.187772 TCTTCTGCTGCTGTAAAGGAGAATA 59.812 40.000 5.46 0.00 46.74 1.75
5584 6286 4.759782 TCTGCTGCTGTAAAGGAGAATAC 58.240 43.478 5.46 0.00 38.94 1.89
5585 6287 4.467795 TCTGCTGCTGTAAAGGAGAATACT 59.532 41.667 5.46 0.00 38.94 2.12
5586 6288 5.046304 TCTGCTGCTGTAAAGGAGAATACTT 60.046 40.000 5.46 0.00 38.94 2.24
5587 6289 6.154534 TCTGCTGCTGTAAAGGAGAATACTTA 59.845 38.462 5.46 0.00 38.94 2.24
5588 6290 6.707290 TGCTGCTGTAAAGGAGAATACTTAA 58.293 36.000 5.46 0.00 0.00 1.85
5589 6291 7.338710 TGCTGCTGTAAAGGAGAATACTTAAT 58.661 34.615 5.46 0.00 0.00 1.40
5590 6292 8.482943 TGCTGCTGTAAAGGAGAATACTTAATA 58.517 33.333 5.46 0.00 0.00 0.98
5591 6293 9.326413 GCTGCTGTAAAGGAGAATACTTAATAA 57.674 33.333 5.46 0.00 0.00 1.40
5598 6300 8.530269 AAAGGAGAATACTTAATAATACGGCG 57.470 34.615 4.80 4.80 0.00 6.46
5599 6301 7.458409 AGGAGAATACTTAATAATACGGCGA 57.542 36.000 16.62 0.00 0.00 5.54
5600 6302 7.889469 AGGAGAATACTTAATAATACGGCGAA 58.111 34.615 16.62 0.00 0.00 4.70
5601 6303 8.362639 AGGAGAATACTTAATAATACGGCGAAA 58.637 33.333 16.62 0.38 0.00 3.46
5602 6304 8.430828 GGAGAATACTTAATAATACGGCGAAAC 58.569 37.037 16.62 0.00 0.00 2.78
5603 6305 8.876275 AGAATACTTAATAATACGGCGAAACA 57.124 30.769 16.62 0.00 0.00 2.83
5604 6306 9.485206 AGAATACTTAATAATACGGCGAAACAT 57.515 29.630 16.62 0.00 0.00 2.71
5615 6317 7.958112 ATACGGCGAAACATTTATACAAAAC 57.042 32.000 16.62 0.00 0.00 2.43
5616 6318 5.759963 ACGGCGAAACATTTATACAAAACA 58.240 33.333 16.62 0.00 0.00 2.83
5617 6319 5.626132 ACGGCGAAACATTTATACAAAACAC 59.374 36.000 16.62 0.00 0.00 3.32
5618 6320 5.059955 CGGCGAAACATTTATACAAAACACC 59.940 40.000 0.00 0.00 0.00 4.16
5619 6321 6.153756 GGCGAAACATTTATACAAAACACCT 58.846 36.000 0.00 0.00 0.00 4.00
5620 6322 7.306953 GGCGAAACATTTATACAAAACACCTA 58.693 34.615 0.00 0.00 0.00 3.08
5621 6323 7.971722 GGCGAAACATTTATACAAAACACCTAT 59.028 33.333 0.00 0.00 0.00 2.57
5622 6324 9.006215 GCGAAACATTTATACAAAACACCTATC 57.994 33.333 0.00 0.00 0.00 2.08
5623 6325 9.498307 CGAAACATTTATACAAAACACCTATCC 57.502 33.333 0.00 0.00 0.00 2.59
5624 6326 9.797556 GAAACATTTATACAAAACACCTATCCC 57.202 33.333 0.00 0.00 0.00 3.85
5625 6327 7.562454 ACATTTATACAAAACACCTATCCCG 57.438 36.000 0.00 0.00 0.00 5.14
5626 6328 7.340256 ACATTTATACAAAACACCTATCCCGA 58.660 34.615 0.00 0.00 0.00 5.14
5627 6329 7.497909 ACATTTATACAAAACACCTATCCCGAG 59.502 37.037 0.00 0.00 0.00 4.63
5628 6330 2.109425 ACAAAACACCTATCCCGAGC 57.891 50.000 0.00 0.00 0.00 5.03
5629 6331 1.349688 ACAAAACACCTATCCCGAGCA 59.650 47.619 0.00 0.00 0.00 4.26
5630 6332 1.737793 CAAAACACCTATCCCGAGCAC 59.262 52.381 0.00 0.00 0.00 4.40
5631 6333 0.981183 AAACACCTATCCCGAGCACA 59.019 50.000 0.00 0.00 0.00 4.57
5632 6334 0.249398 AACACCTATCCCGAGCACAC 59.751 55.000 0.00 0.00 0.00 3.82
5633 6335 1.226974 CACCTATCCCGAGCACACG 60.227 63.158 0.00 0.00 0.00 4.49
5634 6336 2.279517 CCTATCCCGAGCACACGC 60.280 66.667 0.00 0.00 38.99 5.34
5635 6337 2.494445 CTATCCCGAGCACACGCA 59.506 61.111 0.00 0.00 42.27 5.24
5636 6338 1.153647 CTATCCCGAGCACACGCAA 60.154 57.895 0.00 0.00 42.27 4.85
5637 6339 1.148157 CTATCCCGAGCACACGCAAG 61.148 60.000 0.00 0.00 42.27 4.01
5777 6479 1.029681 GGCGACTCAAAAACCTTGGT 58.970 50.000 0.00 0.00 0.00 3.67
5780 6482 2.459934 CGACTCAAAAACCTTGGTTGC 58.540 47.619 5.74 0.00 0.00 4.17
5781 6483 2.159310 CGACTCAAAAACCTTGGTTGCA 60.159 45.455 5.74 0.00 0.00 4.08
5782 6484 3.490761 CGACTCAAAAACCTTGGTTGCAT 60.491 43.478 5.74 0.00 0.00 3.96
5817 6519 4.569966 GCAAGTAGATGTCCATGAGAACAG 59.430 45.833 0.00 0.00 0.00 3.16
5823 6525 6.159299 AGATGTCCATGAGAACAGTCATAG 57.841 41.667 0.00 0.00 35.30 2.23
5855 6557 6.830873 AAGGAACATGAGGAGAAATCTTTG 57.169 37.500 0.00 0.00 0.00 2.77
5862 6564 3.760151 TGAGGAGAAATCTTTGCACATGG 59.240 43.478 0.00 0.00 0.00 3.66
5864 6566 4.922206 AGGAGAAATCTTTGCACATGGTA 58.078 39.130 0.00 0.00 0.00 3.25
5867 6569 5.002464 AGAAATCTTTGCACATGGTATGC 57.998 39.130 0.00 0.00 43.68 3.14
5872 6576 0.520847 TTGCACATGGTATGCGTGTG 59.479 50.000 11.73 11.73 46.49 3.82
5881 6585 3.932822 TGGTATGCGTGTGTGTCTTTAT 58.067 40.909 0.00 0.00 0.00 1.40
5884 6588 3.811722 ATGCGTGTGTGTCTTTATGTG 57.188 42.857 0.00 0.00 0.00 3.21
5929 6633 6.320164 TGCTTGACTATTTTACACAAGTTGGT 59.680 34.615 7.96 5.12 39.69 3.67
5931 6635 6.627395 TGACTATTTTACACAAGTTGGTGG 57.373 37.500 7.96 0.00 43.08 4.61
5934 6638 4.561735 ATTTTACACAAGTTGGTGGACG 57.438 40.909 7.96 0.00 43.08 4.79
5964 6668 3.118702 AGAGAGACTCAGATGTTGCATGG 60.119 47.826 5.02 0.00 32.06 3.66
5975 6679 7.062322 TCAGATGTTGCATGGTTATTTATCCT 58.938 34.615 0.00 0.00 0.00 3.24
5979 6683 8.766994 ATGTTGCATGGTTATTTATCCTAAGT 57.233 30.769 0.00 0.00 0.00 2.24
6108 6816 6.969993 AGTTGGTTATGCTTGGACTTTTTA 57.030 33.333 0.00 0.00 0.00 1.52
6456 7179 3.954258 CTGATGTAAAATGAACCCTCCCC 59.046 47.826 0.00 0.00 0.00 4.81
6468 7196 3.148279 CTCCCCTTCCTCCCGTCG 61.148 72.222 0.00 0.00 0.00 5.12
6488 7216 2.348243 CCGCCCCCGTTTGTCTTA 59.652 61.111 0.00 0.00 0.00 2.10
6652 7406 1.033574 GCCGAGTATGGTCTGCTAGT 58.966 55.000 0.00 0.00 0.00 2.57
6656 7410 2.287308 CGAGTATGGTCTGCTAGTCTGC 60.287 54.545 0.00 0.00 0.00 4.26
6874 7637 2.093447 ACCTTACCCTCTCGCAATCAAG 60.093 50.000 0.00 0.00 0.00 3.02
6875 7638 1.936547 CTTACCCTCTCGCAATCAAGC 59.063 52.381 0.00 0.00 0.00 4.01
6887 7658 2.061028 CAATCAAGCGCCCTTGTTTTC 58.939 47.619 10.78 0.00 46.74 2.29
6905 7676 2.440517 TCTACCGGGCATGTGTAGTA 57.559 50.000 6.32 0.00 34.83 1.82
6906 7677 2.026641 TCTACCGGGCATGTGTAGTAC 58.973 52.381 6.32 0.00 34.83 2.73
6908 7679 0.535335 ACCGGGCATGTGTAGTACAG 59.465 55.000 6.32 0.00 43.80 2.74
6909 7680 0.535335 CCGGGCATGTGTAGTACAGT 59.465 55.000 2.39 0.00 43.80 3.55
6910 7681 1.752498 CCGGGCATGTGTAGTACAGTA 59.248 52.381 2.39 0.00 43.80 2.74
6911 7682 2.223735 CCGGGCATGTGTAGTACAGTAG 60.224 54.545 2.39 0.00 43.80 2.57
6935 7711 6.154706 AGAGGAGTACAATGTTACTTACTGGG 59.845 42.308 0.00 0.00 0.00 4.45
6967 7748 1.202533 GGCAGCTACGCTTCCTTATCA 60.203 52.381 0.00 0.00 38.84 2.15
7097 7901 2.105466 GCGACTCCTCTACGTCCGT 61.105 63.158 0.00 0.00 0.00 4.69
7142 7946 2.088423 GGGATTTGTGCGTGTTATCCA 58.912 47.619 0.00 0.00 37.17 3.41
7170 7974 5.237705 CAAAACAAAAGAAAAACGAGTCGC 58.762 37.500 13.59 0.00 0.00 5.19
7191 8003 1.623081 TTGGCAGAAATCGTCGTCGC 61.623 55.000 0.00 0.00 36.96 5.19
7192 8004 1.805945 GGCAGAAATCGTCGTCGCT 60.806 57.895 0.00 0.00 36.96 4.93
7193 8005 1.341802 GCAGAAATCGTCGTCGCTG 59.658 57.895 0.00 0.33 36.96 5.18
7194 8006 1.071019 GCAGAAATCGTCGTCGCTGA 61.071 55.000 10.43 0.00 36.96 4.26
7195 8007 1.550065 CAGAAATCGTCGTCGCTGAT 58.450 50.000 0.00 0.00 36.96 2.90
7196 8008 1.253800 CAGAAATCGTCGTCGCTGATG 59.746 52.381 0.00 0.00 36.96 3.07
7197 8009 1.132453 AGAAATCGTCGTCGCTGATGA 59.868 47.619 0.00 1.85 38.21 2.92
7199 8011 0.733150 AATCGTCGTCGCTGATGAGA 59.267 50.000 0.00 3.04 37.32 3.27
7200 8012 0.947960 ATCGTCGTCGCTGATGAGAT 59.052 50.000 0.00 4.71 37.32 2.75
7201 8013 0.028110 TCGTCGTCGCTGATGAGATG 59.972 55.000 0.00 0.00 36.96 2.90
7202 8014 0.932123 CGTCGTCGCTGATGAGATGG 60.932 60.000 1.49 0.00 31.31 3.51
7210 8028 2.289820 CGCTGATGAGATGGGATGTTTG 59.710 50.000 0.00 0.00 0.00 2.93
7211 8029 3.285484 GCTGATGAGATGGGATGTTTGT 58.715 45.455 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.849976 GATGATGCGCTAGCTTGGGC 61.850 60.000 26.03 26.03 45.42 5.36
21 22 0.533531 TGATGATGCGCTAGCTTGGG 60.534 55.000 13.93 7.85 45.42 4.12
22 23 1.197036 CATGATGATGCGCTAGCTTGG 59.803 52.381 13.93 0.00 45.42 3.61
23 24 1.871676 ACATGATGATGCGCTAGCTTG 59.128 47.619 13.93 8.96 45.42 4.01
24 25 2.251409 ACATGATGATGCGCTAGCTT 57.749 45.000 13.93 0.00 45.42 3.74
25 26 1.871676 CAACATGATGATGCGCTAGCT 59.128 47.619 13.93 0.00 45.42 3.32
26 27 1.069432 CCAACATGATGATGCGCTAGC 60.069 52.381 9.73 4.06 45.41 3.42
27 28 1.069432 GCCAACATGATGATGCGCTAG 60.069 52.381 9.73 0.00 32.14 3.42
28 29 0.946528 GCCAACATGATGATGCGCTA 59.053 50.000 9.73 0.00 32.14 4.26
29 30 1.731700 GCCAACATGATGATGCGCT 59.268 52.632 9.73 0.00 32.14 5.92
30 31 1.656263 CGCCAACATGATGATGCGC 60.656 57.895 12.17 0.00 32.14 6.09
31 32 1.009335 CCGCCAACATGATGATGCG 60.009 57.895 16.07 16.07 32.14 4.73
32 33 1.361271 CCCGCCAACATGATGATGC 59.639 57.895 4.25 0.00 32.14 3.91
33 34 0.466007 TCCCCGCCAACATGATGATG 60.466 55.000 4.25 0.00 35.49 3.07
34 35 0.179009 CTCCCCGCCAACATGATGAT 60.179 55.000 4.25 0.00 0.00 2.45
35 36 1.224315 CTCCCCGCCAACATGATGA 59.776 57.895 4.25 0.00 0.00 2.92
36 37 0.816825 CTCTCCCCGCCAACATGATG 60.817 60.000 0.00 0.00 0.00 3.07
37 38 1.528824 CTCTCCCCGCCAACATGAT 59.471 57.895 0.00 0.00 0.00 2.45
38 39 2.669133 CCTCTCCCCGCCAACATGA 61.669 63.158 0.00 0.00 0.00 3.07
39 40 2.124570 CCTCTCCCCGCCAACATG 60.125 66.667 0.00 0.00 0.00 3.21
40 41 3.411517 CCCTCTCCCCGCCAACAT 61.412 66.667 0.00 0.00 0.00 2.71
41 42 4.974438 ACCCTCTCCCCGCCAACA 62.974 66.667 0.00 0.00 0.00 3.33
42 43 4.410400 CACCCTCTCCCCGCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
47 48 2.804828 GAAGTTGCACCCTCTCCCCG 62.805 65.000 0.00 0.00 0.00 5.73
48 49 1.002011 GAAGTTGCACCCTCTCCCC 60.002 63.158 0.00 0.00 0.00 4.81
49 50 0.110486 TTGAAGTTGCACCCTCTCCC 59.890 55.000 0.00 0.00 0.00 4.30
50 51 1.981256 TTTGAAGTTGCACCCTCTCC 58.019 50.000 0.00 0.00 0.00 3.71
51 52 4.590850 AATTTTGAAGTTGCACCCTCTC 57.409 40.909 0.00 0.00 0.00 3.20
52 53 4.651045 AGAAATTTTGAAGTTGCACCCTCT 59.349 37.500 0.00 0.00 0.00 3.69
53 54 4.948847 AGAAATTTTGAAGTTGCACCCTC 58.051 39.130 0.00 0.00 0.00 4.30
54 55 5.357742 AAGAAATTTTGAAGTTGCACCCT 57.642 34.783 0.00 0.00 0.00 4.34
55 56 4.511454 GGAAGAAATTTTGAAGTTGCACCC 59.489 41.667 0.00 0.00 0.00 4.61
56 57 5.115480 TGGAAGAAATTTTGAAGTTGCACC 58.885 37.500 0.00 0.00 0.00 5.01
57 58 6.652245 CATGGAAGAAATTTTGAAGTTGCAC 58.348 36.000 0.00 0.00 0.00 4.57
58 59 5.236911 GCATGGAAGAAATTTTGAAGTTGCA 59.763 36.000 0.00 0.00 0.00 4.08
59 60 5.334337 GGCATGGAAGAAATTTTGAAGTTGC 60.334 40.000 0.00 0.00 0.00 4.17
60 61 5.759273 TGGCATGGAAGAAATTTTGAAGTTG 59.241 36.000 0.00 0.00 0.00 3.16
61 62 5.927819 TGGCATGGAAGAAATTTTGAAGTT 58.072 33.333 0.00 0.00 0.00 2.66
62 63 5.305128 TCTGGCATGGAAGAAATTTTGAAGT 59.695 36.000 0.00 0.00 0.00 3.01
63 64 5.786311 TCTGGCATGGAAGAAATTTTGAAG 58.214 37.500 0.00 0.00 0.00 3.02
64 65 5.804944 TCTGGCATGGAAGAAATTTTGAA 57.195 34.783 0.00 0.00 0.00 2.69
65 66 5.726397 CATCTGGCATGGAAGAAATTTTGA 58.274 37.500 0.00 0.00 0.00 2.69
66 67 4.331717 GCATCTGGCATGGAAGAAATTTTG 59.668 41.667 0.00 0.00 43.97 2.44
67 68 4.510571 GCATCTGGCATGGAAGAAATTTT 58.489 39.130 0.00 0.00 43.97 1.82
68 69 3.429822 CGCATCTGGCATGGAAGAAATTT 60.430 43.478 0.00 0.00 45.17 1.82
69 70 2.100252 CGCATCTGGCATGGAAGAAATT 59.900 45.455 0.00 0.00 45.17 1.82
70 71 1.679680 CGCATCTGGCATGGAAGAAAT 59.320 47.619 0.00 0.00 45.17 2.17
71 72 1.097232 CGCATCTGGCATGGAAGAAA 58.903 50.000 0.00 0.00 45.17 2.52
72 73 0.252761 TCGCATCTGGCATGGAAGAA 59.747 50.000 0.00 0.00 45.17 2.52
73 74 0.179065 CTCGCATCTGGCATGGAAGA 60.179 55.000 0.00 0.00 45.17 2.87
74 75 1.164662 CCTCGCATCTGGCATGGAAG 61.165 60.000 0.00 0.00 45.17 3.46
75 76 1.153107 CCTCGCATCTGGCATGGAA 60.153 57.895 0.00 0.00 45.17 3.53
76 77 1.625417 TTCCTCGCATCTGGCATGGA 61.625 55.000 0.00 0.00 45.17 3.41
77 78 1.153107 TTCCTCGCATCTGGCATGG 60.153 57.895 0.00 0.00 45.17 3.66
78 79 0.463295 ACTTCCTCGCATCTGGCATG 60.463 55.000 0.00 0.00 45.17 4.06
79 80 0.463295 CACTTCCTCGCATCTGGCAT 60.463 55.000 0.00 0.00 45.17 4.40
80 81 1.078918 CACTTCCTCGCATCTGGCA 60.079 57.895 0.00 0.00 45.17 4.92
81 82 0.674895 AACACTTCCTCGCATCTGGC 60.675 55.000 0.00 0.00 39.90 4.85
82 83 1.081892 CAACACTTCCTCGCATCTGG 58.918 55.000 0.00 0.00 0.00 3.86
83 84 1.998315 CTCAACACTTCCTCGCATCTG 59.002 52.381 0.00 0.00 0.00 2.90
84 85 1.066573 CCTCAACACTTCCTCGCATCT 60.067 52.381 0.00 0.00 0.00 2.90
85 86 1.363744 CCTCAACACTTCCTCGCATC 58.636 55.000 0.00 0.00 0.00 3.91
86 87 0.036010 CCCTCAACACTTCCTCGCAT 60.036 55.000 0.00 0.00 0.00 4.73
87 88 1.118965 TCCCTCAACACTTCCTCGCA 61.119 55.000 0.00 0.00 0.00 5.10
88 89 0.390472 CTCCCTCAACACTTCCTCGC 60.390 60.000 0.00 0.00 0.00 5.03
89 90 0.969894 ACTCCCTCAACACTTCCTCG 59.030 55.000 0.00 0.00 0.00 4.63
123 124 1.375908 GCTCAATGGTCGAGGCACA 60.376 57.895 0.00 0.00 0.00 4.57
132 133 2.961062 GGCCTATGAATTGCTCAATGGT 59.039 45.455 0.00 0.00 37.67 3.55
135 136 2.158623 TCGGGCCTATGAATTGCTCAAT 60.159 45.455 0.84 0.00 37.67 2.57
136 137 1.211703 TCGGGCCTATGAATTGCTCAA 59.788 47.619 0.84 0.00 37.67 3.02
148 149 2.731571 GCAGGATGTGTCGGGCCTA 61.732 63.158 0.84 0.00 39.31 3.93
151 152 2.124570 ATGCAGGATGTGTCGGGC 60.125 61.111 0.00 0.00 39.31 6.13
166 167 1.019673 CATGTCGCCCAAGGAAGATG 58.980 55.000 0.00 0.00 0.00 2.90
179 181 3.002246 CCCAATCGTACAAATCCATGTCG 59.998 47.826 0.00 0.00 34.75 4.35
187 189 2.498481 TCGAGTCCCCAATCGTACAAAT 59.502 45.455 0.00 0.00 39.86 2.32
194 196 0.739813 GGTTGTCGAGTCCCCAATCG 60.740 60.000 0.00 0.00 40.26 3.34
197 199 0.036164 CATGGTTGTCGAGTCCCCAA 59.964 55.000 0.00 0.00 0.00 4.12
198 200 1.676968 CATGGTTGTCGAGTCCCCA 59.323 57.895 0.00 0.00 0.00 4.96
208 210 6.891361 TCATATTTGAAGTGATCCATGGTTGT 59.109 34.615 12.58 0.00 0.00 3.32
221 223 6.182627 TGGTCAGAGCATTCATATTTGAAGT 58.817 36.000 0.00 0.00 44.75 3.01
224 226 6.604396 ACAATGGTCAGAGCATTCATATTTGA 59.396 34.615 22.46 0.00 43.63 2.69
260 262 3.327757 AGCTATTGAAGAATGGGCCGATA 59.672 43.478 0.00 0.00 0.00 2.92
264 266 3.220674 AGAGCTATTGAAGAATGGGCC 57.779 47.619 0.00 0.00 0.00 5.80
278 280 5.480772 GGCAATTACCTATGGTCTAGAGCTA 59.519 44.000 21.80 9.58 37.09 3.32
290 292 3.669939 ACTTGGCAGGCAATTACCTAT 57.330 42.857 10.32 0.00 38.26 2.57
296 298 2.250031 TCATCAACTTGGCAGGCAATT 58.750 42.857 10.32 1.13 0.00 2.32
299 301 1.250328 CTTCATCAACTTGGCAGGCA 58.750 50.000 0.00 0.00 0.00 4.75
380 383 5.185454 CCAAGCAGACTCCATATGTTACAA 58.815 41.667 1.24 0.00 0.00 2.41
388 391 4.081087 GGTAAGAACCAAGCAGACTCCATA 60.081 45.833 0.00 0.00 45.98 2.74
420 423 3.539791 GCCCATGATTTGGCGGGG 61.540 66.667 0.00 0.00 44.97 5.73
460 463 0.671251 AGAGATGAGACGGCCGAATC 59.329 55.000 35.90 27.47 0.00 2.52
469 472 5.233902 CGTCAATTCATTGGAGAGATGAGAC 59.766 44.000 0.00 0.00 38.30 3.36
470 473 5.354767 CGTCAATTCATTGGAGAGATGAGA 58.645 41.667 0.00 0.00 38.30 3.27
483 486 6.183360 CCCTCTCTATTTTTGCGTCAATTCAT 60.183 38.462 0.00 0.00 0.00 2.57
508 511 0.036732 TGTCAACCCACCTCAGCATC 59.963 55.000 0.00 0.00 0.00 3.91
510 513 1.148273 GTGTCAACCCACCTCAGCA 59.852 57.895 0.00 0.00 0.00 4.41
511 514 1.148273 TGTGTCAACCCACCTCAGC 59.852 57.895 0.00 0.00 34.35 4.26
512 515 0.535102 GGTGTGTCAACCCACCTCAG 60.535 60.000 7.45 0.00 46.17 3.35
514 517 4.475527 GGTGTGTCAACCCACCTC 57.524 61.111 7.45 0.00 46.17 3.85
518 521 1.924731 TGTTTTGGTGTGTCAACCCA 58.075 45.000 0.00 0.00 39.70 4.51
519 522 3.194062 CAATGTTTTGGTGTGTCAACCC 58.806 45.455 0.00 0.00 39.70 4.11
571 575 5.404946 CCAGCCAAAATACTGAAGTTGATG 58.595 41.667 0.00 0.00 35.90 3.07
572 576 4.463891 CCCAGCCAAAATACTGAAGTTGAT 59.536 41.667 0.00 0.00 35.90 2.57
578 582 2.170166 CTGCCCAGCCAAAATACTGAA 58.830 47.619 0.00 0.00 35.90 3.02
582 586 1.517361 GCCTGCCCAGCCAAAATAC 59.483 57.895 0.00 0.00 0.00 1.89
599 603 1.087501 GTTTGGATTGGAGACCTCGC 58.912 55.000 0.00 0.00 0.00 5.03
605 610 3.573538 CACATGGTTGTTTGGATTGGAGA 59.426 43.478 0.00 0.00 32.34 3.71
610 615 5.363580 AGAGTTTCACATGGTTGTTTGGATT 59.636 36.000 0.00 0.00 32.34 3.01
618 623 1.955778 TGGCAGAGTTTCACATGGTTG 59.044 47.619 0.00 0.00 0.00 3.77
620 625 2.233271 CTTGGCAGAGTTTCACATGGT 58.767 47.619 0.00 0.00 0.00 3.55
623 628 1.610522 GTGCTTGGCAGAGTTTCACAT 59.389 47.619 0.00 0.00 40.08 3.21
624 629 1.024271 GTGCTTGGCAGAGTTTCACA 58.976 50.000 0.00 0.00 40.08 3.58
625 630 1.024271 TGTGCTTGGCAGAGTTTCAC 58.976 50.000 0.00 0.00 40.08 3.18
629 642 2.157738 GAGATTGTGCTTGGCAGAGTT 58.842 47.619 0.00 0.00 40.08 3.01
654 667 3.405831 TCTTTGTGAATGGCTGACTCAG 58.594 45.455 1.21 1.21 34.12 3.35
657 670 3.755378 GTGATCTTTGTGAATGGCTGACT 59.245 43.478 0.00 0.00 0.00 3.41
658 671 3.119708 GGTGATCTTTGTGAATGGCTGAC 60.120 47.826 0.00 0.00 0.00 3.51
659 672 3.084039 GGTGATCTTTGTGAATGGCTGA 58.916 45.455 0.00 0.00 0.00 4.26
660 673 2.821378 TGGTGATCTTTGTGAATGGCTG 59.179 45.455 0.00 0.00 0.00 4.85
661 674 3.087031 CTGGTGATCTTTGTGAATGGCT 58.913 45.455 0.00 0.00 0.00 4.75
662 675 3.084039 TCTGGTGATCTTTGTGAATGGC 58.916 45.455 0.00 0.00 0.00 4.40
663 676 5.530171 CCTATCTGGTGATCTTTGTGAATGG 59.470 44.000 0.00 0.00 34.32 3.16
664 677 5.530171 CCCTATCTGGTGATCTTTGTGAATG 59.470 44.000 0.00 0.00 34.32 2.67
665 678 5.429762 TCCCTATCTGGTGATCTTTGTGAAT 59.570 40.000 0.00 0.00 34.32 2.57
666 679 4.782691 TCCCTATCTGGTGATCTTTGTGAA 59.217 41.667 0.00 0.00 34.32 3.18
667 680 4.361783 TCCCTATCTGGTGATCTTTGTGA 58.638 43.478 0.00 0.00 34.32 3.58
668 681 4.760530 TCCCTATCTGGTGATCTTTGTG 57.239 45.455 0.00 0.00 34.32 3.33
697 724 2.024319 GTGACACGTCAGCTGCCTC 61.024 63.158 9.47 0.96 40.75 4.70
726 753 3.322828 TGGTGACCTAGAACTGTTGGTAC 59.677 47.826 2.11 0.00 32.30 3.34
755 782 6.538742 CCAGTGACTCAGAACTGTTTCTTTTA 59.461 38.462 10.22 0.00 40.34 1.52
760 787 2.545946 GCCAGTGACTCAGAACTGTTTC 59.454 50.000 10.22 1.22 41.85 2.78
832 862 2.253758 CCCGCCCATGTAGAATGCG 61.254 63.158 0.00 0.00 44.47 4.73
844 874 2.110006 GAGAGAGATTGCCCGCCC 59.890 66.667 0.00 0.00 0.00 6.13
845 875 1.227497 CAGAGAGAGATTGCCCGCC 60.227 63.158 0.00 0.00 0.00 6.13
846 876 1.227497 CCAGAGAGAGATTGCCCGC 60.227 63.158 0.00 0.00 0.00 6.13
847 877 0.388659 CTCCAGAGAGAGATTGCCCG 59.611 60.000 0.00 0.00 43.39 6.13
848 878 0.106521 GCTCCAGAGAGAGATTGCCC 59.893 60.000 0.00 0.00 43.39 5.36
851 881 3.370366 CGTTTTGCTCCAGAGAGAGATTG 59.630 47.826 0.00 0.00 43.39 2.67
852 882 3.594134 CGTTTTGCTCCAGAGAGAGATT 58.406 45.455 0.00 0.00 43.39 2.40
853 883 2.676463 GCGTTTTGCTCCAGAGAGAGAT 60.676 50.000 0.00 0.00 43.39 2.75
854 884 1.337260 GCGTTTTGCTCCAGAGAGAGA 60.337 52.381 0.00 0.00 43.39 3.10
855 885 1.074752 GCGTTTTGCTCCAGAGAGAG 58.925 55.000 0.00 0.00 43.39 3.20
856 886 3.217242 GCGTTTTGCTCCAGAGAGA 57.783 52.632 0.00 0.00 43.39 3.10
876 906 1.153686 GGGTCGGTCTTAACTCGCC 60.154 63.158 0.00 0.00 0.00 5.54
878 908 1.138247 CCGGGTCGGTCTTAACTCG 59.862 63.158 0.00 0.00 42.73 4.18
1116 1146 0.321346 TCTGATTCTTGAGCGTGGCA 59.679 50.000 0.00 0.00 0.00 4.92
1131 1161 1.809869 CTCGGTGGAGCGAATCTGA 59.190 57.895 2.23 0.00 32.61 3.27
1175 1205 4.504916 CACAGGCGAGCGAGGAGG 62.505 72.222 0.00 0.00 0.00 4.30
1203 1233 2.941453 TGAGCACTCCACGACTAATC 57.059 50.000 0.00 0.00 0.00 1.75
1204 1234 2.739932 GCATGAGCACTCCACGACTAAT 60.740 50.000 0.00 0.00 41.58 1.73
1206 1236 0.173481 GCATGAGCACTCCACGACTA 59.827 55.000 0.00 0.00 41.58 2.59
1216 1256 1.310933 CCCAGGACAAGCATGAGCAC 61.311 60.000 0.00 0.00 45.49 4.40
1219 1259 0.742281 CGACCCAGGACAAGCATGAG 60.742 60.000 0.00 0.00 0.00 2.90
1221 1261 0.742281 CTCGACCCAGGACAAGCATG 60.742 60.000 0.00 0.00 0.00 4.06
1230 1270 2.883828 AACCACTGCTCGACCCAGG 61.884 63.158 11.72 0.11 34.65 4.45
1231 1271 1.669115 CAACCACTGCTCGACCCAG 60.669 63.158 6.76 6.76 36.41 4.45
1246 1286 9.334693 CTTAATTGAGCAGACTTTGTAATCAAC 57.665 33.333 0.00 0.00 32.57 3.18
1254 1308 6.313905 ACCGATACTTAATTGAGCAGACTTTG 59.686 38.462 0.00 0.00 0.00 2.77
1258 1312 5.502544 GCAACCGATACTTAATTGAGCAGAC 60.503 44.000 0.00 0.00 0.00 3.51
1260 1314 4.260784 GGCAACCGATACTTAATTGAGCAG 60.261 45.833 0.00 0.00 0.00 4.24
1261 1315 3.625764 GGCAACCGATACTTAATTGAGCA 59.374 43.478 0.00 0.00 0.00 4.26
1281 1335 1.825622 GGATAGCAAGTGCAGGGGC 60.826 63.158 6.00 0.00 45.16 5.80
1283 1337 0.543277 TGAGGATAGCAAGTGCAGGG 59.457 55.000 6.00 0.00 45.16 4.45
1285 1339 3.066342 CCAAATGAGGATAGCAAGTGCAG 59.934 47.826 6.00 0.00 45.16 4.41
1289 1343 3.659183 AGCCAAATGAGGATAGCAAGT 57.341 42.857 0.00 0.00 0.00 3.16
1290 1344 3.490419 GCAAGCCAAATGAGGATAGCAAG 60.490 47.826 0.00 0.00 0.00 4.01
1291 1345 2.428171 GCAAGCCAAATGAGGATAGCAA 59.572 45.455 0.00 0.00 0.00 3.91
1294 1348 1.605710 CCGCAAGCCAAATGAGGATAG 59.394 52.381 0.00 0.00 39.81 2.08
1295 1349 1.064758 ACCGCAAGCCAAATGAGGATA 60.065 47.619 3.29 0.00 39.81 2.59
1296 1350 0.323725 ACCGCAAGCCAAATGAGGAT 60.324 50.000 3.29 0.00 39.81 3.24
1297 1351 0.539438 AACCGCAAGCCAAATGAGGA 60.539 50.000 3.29 0.00 39.81 3.71
1306 1389 4.347453 CACAGCCAACCGCAAGCC 62.347 66.667 0.00 0.00 41.38 4.35
1326 1409 2.270874 AATCCTTAGGGCGGGCACTG 62.271 60.000 5.52 0.00 38.10 3.66
1336 1419 5.295540 GCACTAAGCTCTTGAAATCCTTAGG 59.704 44.000 9.64 0.00 39.32 2.69
1372 1463 2.180017 GTGCCAAAGCCAGCATCG 59.820 61.111 0.00 0.00 41.86 3.84
1402 1498 5.120830 AGCTAAATACAGTTCTCAAGCAACG 59.879 40.000 0.00 0.00 0.00 4.10
1427 1608 7.727636 ACATTTTTCAGATGTATCGAGCATTCG 60.728 37.037 6.70 0.00 40.65 3.34
1477 1673 5.131142 CCCAGACTATACTTCCAAATGGAGT 59.869 44.000 1.86 6.11 46.36 3.85
1493 1689 0.034380 CGACCCAGAGTCCCAGACTA 60.034 60.000 0.00 0.00 43.53 2.59
1529 1725 3.531538 CGACCTGCTAAGCTTGGATAAA 58.468 45.455 14.82 0.00 0.00 1.40
1580 1776 0.969149 CACTGCTGAGTGGTGACCTA 59.031 55.000 2.11 0.00 45.26 3.08
1582 1778 4.368391 CACTGCTGAGTGGTGACC 57.632 61.111 0.00 0.00 45.26 4.02
1594 1790 3.005684 TGTGAATTTTCCACCATCACTGC 59.994 43.478 5.88 0.00 40.70 4.40
1597 1793 5.649782 AGATGTGAATTTTCCACCATCAC 57.350 39.130 12.93 0.00 40.53 3.06
1616 1812 8.844244 GCACAAGTAATGATTCCTTGAATAGAT 58.156 33.333 15.99 0.00 39.07 1.98
1630 1826 2.805671 CAACCGAGTGCACAAGTAATGA 59.194 45.455 21.04 0.00 0.00 2.57
1631 1827 2.665519 GCAACCGAGTGCACAAGTAATG 60.666 50.000 21.04 11.41 44.29 1.90
1632 1828 1.535462 GCAACCGAGTGCACAAGTAAT 59.465 47.619 21.04 0.00 44.29 1.89
1633 1829 0.941542 GCAACCGAGTGCACAAGTAA 59.058 50.000 21.04 0.00 44.29 2.24
1634 1830 0.882927 GGCAACCGAGTGCACAAGTA 60.883 55.000 21.04 0.00 46.81 2.24
1656 1852 5.243283 GTCTGTACCCATATCACCGTATCTT 59.757 44.000 0.00 0.00 0.00 2.40
1662 1858 2.223971 GGTGTCTGTACCCATATCACCG 60.224 54.545 0.00 0.00 35.36 4.94
1665 1861 2.036387 CCGGTGTCTGTACCCATATCA 58.964 52.381 0.00 0.00 37.44 2.15
1673 1869 0.599558 TGCAGTACCGGTGTCTGTAC 59.400 55.000 29.01 19.64 38.06 2.90
1678 1874 1.359848 CATTCTGCAGTACCGGTGTC 58.640 55.000 19.93 10.57 0.00 3.67
1783 1979 8.665685 CATTCCTAAACTGTCCTGTTTACATAC 58.334 37.037 5.67 0.00 40.23 2.39
1788 1984 5.876357 AGCATTCCTAAACTGTCCTGTTTA 58.124 37.500 8.57 8.57 40.23 2.01
1818 2014 7.660112 ACAGTGCATTTTCATGTTTCTATCAA 58.340 30.769 0.00 0.00 32.28 2.57
1845 2041 9.508567 GTGGCTGAAGAAAACTAAAATCATATC 57.491 33.333 0.00 0.00 0.00 1.63
1882 2078 0.875059 CTCTTCGGTGGCCTTCAAAC 59.125 55.000 3.32 0.00 0.00 2.93
1893 2089 0.971447 GACAGGCCCTACTCTTCGGT 60.971 60.000 0.00 0.00 0.00 4.69
1915 2111 1.412074 GGGGTCAGATCATGCCCAAAT 60.412 52.381 16.81 0.00 43.35 2.32
2113 2311 6.883744 TGTCTAATGTTGTATATGCCTCACA 58.116 36.000 0.00 0.00 0.00 3.58
2115 2313 7.334858 TGTTGTCTAATGTTGTATATGCCTCA 58.665 34.615 0.00 0.00 0.00 3.86
2212 2558 0.398318 GCTCCAACCAACCAGAGAGT 59.602 55.000 0.00 0.00 0.00 3.24
2251 2597 0.962356 AATTTGAGCACCGCCTCCTG 60.962 55.000 0.00 0.00 0.00 3.86
2270 2616 2.594303 CGCTGCTCCACCCAACAA 60.594 61.111 0.00 0.00 0.00 2.83
2286 2632 2.151202 TGGAGAAAAACAAGCTAGCCG 58.849 47.619 12.13 5.56 0.00 5.52
2342 2688 1.130054 TGCAAGGAAGGAGGTCAGCT 61.130 55.000 0.00 0.00 0.00 4.24
2347 2693 2.122768 CCTCTATGCAAGGAAGGAGGT 58.877 52.381 0.00 0.00 35.83 3.85
2363 2717 1.280457 CCCTTGACCTAAGTGCCTCT 58.720 55.000 0.00 0.00 34.45 3.69
2438 2795 1.918800 CCTTCGGTGTTCCCTCCCT 60.919 63.158 0.00 0.00 0.00 4.20
2462 2819 0.595095 GCCACACCAGCAAGAAGAAG 59.405 55.000 0.00 0.00 0.00 2.85
2463 2820 1.165907 CGCCACACCAGCAAGAAGAA 61.166 55.000 0.00 0.00 0.00 2.52
2464 2821 1.597854 CGCCACACCAGCAAGAAGA 60.598 57.895 0.00 0.00 0.00 2.87
2503 2867 3.790437 ATGCCCACCTGAGAGCCG 61.790 66.667 0.00 0.00 0.00 5.52
2556 3202 5.352293 CCAGAATACGTAAAAACCCTACACC 59.648 44.000 0.00 0.00 0.00 4.16
2645 3301 4.098055 CGGATACTCGGATACATTCAGG 57.902 50.000 0.00 0.00 0.00 3.86
2668 3324 2.151202 CGCAAAACCAGTGTATCAGGT 58.849 47.619 0.00 0.00 37.54 4.00
2795 3460 2.540265 AGTCTGCCAGAACTTGTCAG 57.460 50.000 0.00 0.00 0.00 3.51
2931 3596 2.118313 TGAGCAACCCTCATGTCATG 57.882 50.000 6.47 6.47 45.44 3.07
3277 3944 6.823689 ACAAAGCAAGAGAAAGAACTTCAGTA 59.176 34.615 0.00 0.00 36.40 2.74
3283 3950 5.163612 GGTTCACAAAGCAAGAGAAAGAACT 60.164 40.000 0.00 0.00 34.76 3.01
3351 4019 4.070716 GCCATGAATGAGACCAAGGATAG 58.929 47.826 0.00 0.00 0.00 2.08
3436 4104 4.122143 TCTTTGGGAAAAACTGCACAAG 57.878 40.909 0.00 0.00 0.00 3.16
3704 4372 7.131565 GGTGATGCAAAAACAAAATTTAGTGG 58.868 34.615 0.00 0.00 0.00 4.00
3718 4387 2.622942 GTCTCTGTTGGGTGATGCAAAA 59.377 45.455 0.00 0.00 0.00 2.44
3923 4592 1.270947 GGTCACCCCGTGTAATGTTCA 60.271 52.381 0.00 0.00 34.79 3.18
3966 4635 9.786105 TTCATTAACACACTGTATGCAATAATG 57.214 29.630 10.88 10.88 34.55 1.90
4119 4796 5.603395 TGATAATGACATTTGCCATGGGAAT 59.397 36.000 20.37 4.72 0.00 3.01
4140 4817 7.013369 GTCCCTTGACTTCAAAACTAAGTTGAT 59.987 37.037 0.00 0.00 37.31 2.57
4144 4821 5.751586 TGTCCCTTGACTTCAAAACTAAGT 58.248 37.500 0.00 0.00 42.28 2.24
4307 4984 3.257624 ACGAAGGGAGTACAAGGTTACAG 59.742 47.826 0.00 0.00 0.00 2.74
4308 4985 3.233507 ACGAAGGGAGTACAAGGTTACA 58.766 45.455 0.00 0.00 0.00 2.41
4317 4994 0.890683 TTTCCGGACGAAGGGAGTAC 59.109 55.000 1.83 0.00 33.01 2.73
4318 4995 1.856629 ATTTCCGGACGAAGGGAGTA 58.143 50.000 1.83 0.00 33.01 2.59
4319 4996 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
4320 4997 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
4321 4998 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
4322 4999 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
4323 5000 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
4324 5001 2.597305 CGACAAGTATTTCCGGACGAAG 59.403 50.000 1.83 0.00 0.00 3.79
4325 5002 2.030007 ACGACAAGTATTTCCGGACGAA 60.030 45.455 1.83 0.00 0.00 3.85
4326 5003 1.541147 ACGACAAGTATTTCCGGACGA 59.459 47.619 1.83 0.00 0.00 4.20
4327 5004 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
4328 5005 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
4329 5006 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
4330 5007 5.006358 CCATTTCTACGACAAGTATTTCCGG 59.994 44.000 0.00 0.00 34.34 5.14
4331 5008 5.808540 TCCATTTCTACGACAAGTATTTCCG 59.191 40.000 0.00 0.00 34.34 4.30
4332 5009 7.787725 ATCCATTTCTACGACAAGTATTTCC 57.212 36.000 0.00 0.00 34.34 3.13
4333 5010 9.309516 TGTATCCATTTCTACGACAAGTATTTC 57.690 33.333 0.00 0.00 34.34 2.17
4334 5011 9.661563 TTGTATCCATTTCTACGACAAGTATTT 57.338 29.630 0.00 0.00 34.34 1.40
4335 5012 9.661563 TTTGTATCCATTTCTACGACAAGTATT 57.338 29.630 0.00 0.00 34.34 1.89
4336 5013 9.832445 ATTTGTATCCATTTCTACGACAAGTAT 57.168 29.630 0.00 0.00 34.34 2.12
4337 5014 9.093970 CATTTGTATCCATTTCTACGACAAGTA 57.906 33.333 0.00 0.00 0.00 2.24
4338 5015 7.822334 TCATTTGTATCCATTTCTACGACAAGT 59.178 33.333 0.00 0.00 0.00 3.16
4339 5016 8.196802 TCATTTGTATCCATTTCTACGACAAG 57.803 34.615 0.00 0.00 0.00 3.16
4340 5017 8.554835 TTCATTTGTATCCATTTCTACGACAA 57.445 30.769 0.00 0.00 0.00 3.18
4341 5018 8.611757 CATTCATTTGTATCCATTTCTACGACA 58.388 33.333 0.00 0.00 0.00 4.35
4342 5019 8.612619 ACATTCATTTGTATCCATTTCTACGAC 58.387 33.333 0.00 0.00 0.00 4.34
4343 5020 8.731275 ACATTCATTTGTATCCATTTCTACGA 57.269 30.769 0.00 0.00 0.00 3.43
4381 5058 8.690884 CGAGGAATGGATGTATCTAGATGTATT 58.309 37.037 15.79 6.57 0.00 1.89
4382 5059 7.286546 CCGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
4383 5060 6.603599 CCGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
4384 5061 5.420421 CCGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
4385 5062 5.654209 TCCGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
4386 5063 5.654650 GTCCGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 37.93 1.98
4387 5064 5.010933 GTCCGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 37.93 2.43
4388 5065 4.767409 TGTCCGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 37.93 2.43
4389 5066 4.736473 TGTCCGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 37.93 1.98
4390 5067 3.576861 TGTCCGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 37.93 1.98
4391 5068 4.202264 ACTTGTCCGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 37.93 2.24
4392 5069 3.711704 ACTTGTCCGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 37.93 2.29
4393 5070 3.104512 ACTTGTCCGAGGAATGGATGTA 58.895 45.455 0.00 0.00 37.93 2.29
4394 5071 1.909302 ACTTGTCCGAGGAATGGATGT 59.091 47.619 0.00 0.00 37.93 3.06
4395 5072 2.698855 ACTTGTCCGAGGAATGGATG 57.301 50.000 0.00 0.00 37.93 3.51
4396 5073 5.368989 GAAATACTTGTCCGAGGAATGGAT 58.631 41.667 0.00 0.00 37.93 3.41
4397 5074 4.383770 GGAAATACTTGTCCGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
4398 5075 3.877508 GGAAATACTTGTCCGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
4407 5084 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
4408 5085 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4409 5086 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4410 5087 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4411 5088 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4412 5089 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4413 5090 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4414 5091 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4415 5092 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4416 5093 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4417 5094 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
4418 5095 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
4419 5096 1.150992 AGATACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
4420 5097 0.465824 ACAGATACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
4421 5098 1.777941 AACAGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
4422 5099 3.522553 CAAAACAGATACTCCCTCCGTC 58.477 50.000 0.00 0.00 0.00 4.79
4423 5100 2.354805 GCAAAACAGATACTCCCTCCGT 60.355 50.000 0.00 0.00 0.00 4.69
4424 5101 2.280628 GCAAAACAGATACTCCCTCCG 58.719 52.381 0.00 0.00 0.00 4.63
4425 5102 2.239907 AGGCAAAACAGATACTCCCTCC 59.760 50.000 0.00 0.00 0.00 4.30
4426 5103 3.636153 AGGCAAAACAGATACTCCCTC 57.364 47.619 0.00 0.00 0.00 4.30
4427 5104 5.222048 TGTTAAGGCAAAACAGATACTCCCT 60.222 40.000 1.07 0.00 33.13 4.20
4428 5105 5.007682 TGTTAAGGCAAAACAGATACTCCC 58.992 41.667 1.07 0.00 33.13 4.30
4429 5106 6.599638 AGATGTTAAGGCAAAACAGATACTCC 59.400 38.462 9.93 0.00 40.00 3.85
4430 5107 7.617041 AGATGTTAAGGCAAAACAGATACTC 57.383 36.000 9.93 3.62 40.00 2.59
4431 5108 9.686683 ATAAGATGTTAAGGCAAAACAGATACT 57.313 29.630 9.93 5.08 40.00 2.12
4520 5197 2.557920 AGCACCAGGTTCTCTGAAAG 57.442 50.000 0.00 0.00 46.18 2.62
4544 5223 0.032678 CATACCAGACGCTGCCCTAG 59.967 60.000 0.00 0.00 0.00 3.02
4611 5290 2.189594 TGTGACAGCTGATTGGGAAG 57.810 50.000 23.35 0.00 0.00 3.46
4614 5293 3.947910 AAATTGTGACAGCTGATTGGG 57.052 42.857 23.35 0.00 0.00 4.12
5074 5760 9.906660 GTGGACAAATTTATCTTCATGTTTGTA 57.093 29.630 6.75 0.00 39.18 2.41
5104 5790 1.827789 ATGCACCACACCCACACAC 60.828 57.895 0.00 0.00 0.00 3.82
5105 5791 1.827354 CATGCACCACACCCACACA 60.827 57.895 0.00 0.00 0.00 3.72
5106 5792 0.536233 TACATGCACCACACCCACAC 60.536 55.000 0.00 0.00 0.00 3.82
5144 5830 7.659799 ACTTGTGTACAATAGTCAAGCATAACA 59.340 33.333 18.19 0.00 38.99 2.41
5162 5848 0.831966 ACCGTCCACCAACTTGTGTA 59.168 50.000 0.00 0.00 34.35 2.90
5163 5849 0.034863 AACCGTCCACCAACTTGTGT 60.035 50.000 0.00 0.00 34.35 3.72
5179 5865 7.467623 CAACATCTGAGTCTTGCTATAAAACC 58.532 38.462 0.00 0.00 0.00 3.27
5185 5871 4.212143 TGCAACATCTGAGTCTTGCTAT 57.788 40.909 13.32 0.00 39.81 2.97
5190 5876 3.008330 GAGCATGCAACATCTGAGTCTT 58.992 45.455 21.98 0.00 0.00 3.01
5574 6276 7.889469 TCGCCGTATTATTAAGTATTCTCCTT 58.111 34.615 0.00 0.00 0.00 3.36
5576 6278 8.430828 GTTTCGCCGTATTATTAAGTATTCTCC 58.569 37.037 0.00 0.00 0.00 3.71
5577 6279 8.971321 TGTTTCGCCGTATTATTAAGTATTCTC 58.029 33.333 0.00 0.00 0.00 2.87
5578 6280 8.876275 TGTTTCGCCGTATTATTAAGTATTCT 57.124 30.769 0.00 0.00 0.00 2.40
5589 6291 9.488124 GTTTTGTATAAATGTTTCGCCGTATTA 57.512 29.630 0.00 0.00 0.00 0.98
5590 6292 8.021973 TGTTTTGTATAAATGTTTCGCCGTATT 58.978 29.630 0.00 0.00 0.00 1.89
5591 6293 7.482428 GTGTTTTGTATAAATGTTTCGCCGTAT 59.518 33.333 0.00 0.00 0.00 3.06
5592 6294 6.796072 GTGTTTTGTATAAATGTTTCGCCGTA 59.204 34.615 0.00 0.00 0.00 4.02
5593 6295 5.626132 GTGTTTTGTATAAATGTTTCGCCGT 59.374 36.000 0.00 0.00 0.00 5.68
5594 6296 5.059955 GGTGTTTTGTATAAATGTTTCGCCG 59.940 40.000 0.00 0.00 0.00 6.46
5595 6297 6.153756 AGGTGTTTTGTATAAATGTTTCGCC 58.846 36.000 0.00 0.00 0.00 5.54
5596 6298 8.905103 ATAGGTGTTTTGTATAAATGTTTCGC 57.095 30.769 0.00 0.00 0.00 4.70
5597 6299 9.498307 GGATAGGTGTTTTGTATAAATGTTTCG 57.502 33.333 0.00 0.00 0.00 3.46
5598 6300 9.797556 GGGATAGGTGTTTTGTATAAATGTTTC 57.202 33.333 0.00 0.00 0.00 2.78
5599 6301 8.463607 CGGGATAGGTGTTTTGTATAAATGTTT 58.536 33.333 0.00 0.00 0.00 2.83
5600 6302 7.830201 TCGGGATAGGTGTTTTGTATAAATGTT 59.170 33.333 0.00 0.00 0.00 2.71
5601 6303 7.340256 TCGGGATAGGTGTTTTGTATAAATGT 58.660 34.615 0.00 0.00 0.00 2.71
5602 6304 7.519970 GCTCGGGATAGGTGTTTTGTATAAATG 60.520 40.741 0.00 0.00 0.00 2.32
5603 6305 6.485648 GCTCGGGATAGGTGTTTTGTATAAAT 59.514 38.462 0.00 0.00 0.00 1.40
5604 6306 5.818857 GCTCGGGATAGGTGTTTTGTATAAA 59.181 40.000 0.00 0.00 0.00 1.40
5605 6307 5.104859 TGCTCGGGATAGGTGTTTTGTATAA 60.105 40.000 0.00 0.00 0.00 0.98
5606 6308 4.406326 TGCTCGGGATAGGTGTTTTGTATA 59.594 41.667 0.00 0.00 0.00 1.47
5607 6309 3.199071 TGCTCGGGATAGGTGTTTTGTAT 59.801 43.478 0.00 0.00 0.00 2.29
5608 6310 2.568062 TGCTCGGGATAGGTGTTTTGTA 59.432 45.455 0.00 0.00 0.00 2.41
5609 6311 1.349688 TGCTCGGGATAGGTGTTTTGT 59.650 47.619 0.00 0.00 0.00 2.83
5610 6312 1.737793 GTGCTCGGGATAGGTGTTTTG 59.262 52.381 0.00 0.00 0.00 2.44
5611 6313 1.349688 TGTGCTCGGGATAGGTGTTTT 59.650 47.619 0.00 0.00 0.00 2.43
5612 6314 0.981183 TGTGCTCGGGATAGGTGTTT 59.019 50.000 0.00 0.00 0.00 2.83
5613 6315 0.249398 GTGTGCTCGGGATAGGTGTT 59.751 55.000 0.00 0.00 0.00 3.32
5614 6316 1.898154 GTGTGCTCGGGATAGGTGT 59.102 57.895 0.00 0.00 0.00 4.16
5615 6317 1.226974 CGTGTGCTCGGGATAGGTG 60.227 63.158 0.00 0.00 0.00 4.00
5616 6318 3.077519 GCGTGTGCTCGGGATAGGT 62.078 63.158 0.00 0.00 38.39 3.08
5617 6319 2.279517 GCGTGTGCTCGGGATAGG 60.280 66.667 0.00 0.00 38.39 2.57
5618 6320 1.148157 CTTGCGTGTGCTCGGGATAG 61.148 60.000 0.00 0.00 43.34 2.08
5619 6321 1.153647 CTTGCGTGTGCTCGGGATA 60.154 57.895 0.00 0.00 43.34 2.59
5620 6322 1.884075 TACTTGCGTGTGCTCGGGAT 61.884 55.000 0.00 0.00 43.34 3.85
5621 6323 1.884075 ATACTTGCGTGTGCTCGGGA 61.884 55.000 0.00 0.00 43.34 5.14
5622 6324 1.447838 ATACTTGCGTGTGCTCGGG 60.448 57.895 0.00 0.00 43.34 5.14
5623 6325 1.014044 ACATACTTGCGTGTGCTCGG 61.014 55.000 0.00 0.00 43.34 4.63
5624 6326 0.093535 CACATACTTGCGTGTGCTCG 59.906 55.000 0.00 0.00 43.34 5.03
5625 6327 3.955429 CACATACTTGCGTGTGCTC 57.045 52.632 0.00 0.00 43.34 4.26
5633 6335 0.098376 GCAGCAGAGCACATACTTGC 59.902 55.000 0.00 0.00 43.34 4.01
5634 6336 1.664659 GAGCAGCAGAGCACATACTTG 59.335 52.381 0.00 0.00 36.85 3.16
5635 6337 1.554160 AGAGCAGCAGAGCACATACTT 59.446 47.619 0.00 0.00 36.85 2.24
5636 6338 1.193323 AGAGCAGCAGAGCACATACT 58.807 50.000 0.00 0.00 36.85 2.12
5637 6339 2.879002 TAGAGCAGCAGAGCACATAC 57.121 50.000 0.00 0.00 36.85 2.39
5777 6479 5.674052 ACTTGCCATAAATAACCATGCAA 57.326 34.783 0.00 0.00 0.00 4.08
5780 6482 8.169977 ACATCTACTTGCCATAAATAACCATG 57.830 34.615 0.00 0.00 0.00 3.66
5781 6483 7.448469 GGACATCTACTTGCCATAAATAACCAT 59.552 37.037 0.00 0.00 0.00 3.55
5782 6484 6.770785 GGACATCTACTTGCCATAAATAACCA 59.229 38.462 0.00 0.00 0.00 3.67
5817 6519 9.906660 CTCATGTTCCTTAGATCTTACTATGAC 57.093 37.037 0.00 0.00 0.00 3.06
5823 6525 7.589958 TCTCCTCATGTTCCTTAGATCTTAC 57.410 40.000 0.00 0.00 0.00 2.34
5855 6557 0.179192 CACACACGCATACCATGTGC 60.179 55.000 3.60 0.00 46.19 4.57
5862 6564 4.151689 ACACATAAAGACACACACGCATAC 59.848 41.667 0.00 0.00 0.00 2.39
5864 6566 3.138304 ACACATAAAGACACACACGCAT 58.862 40.909 0.00 0.00 0.00 4.73
5867 6569 7.115805 ACAGTTATACACATAAAGACACACACG 59.884 37.037 0.00 0.00 0.00 4.49
5881 6585 8.098286 AGCATAACCAACTTACAGTTATACACA 58.902 33.333 0.00 0.00 36.03 3.72
5884 6588 9.158233 TCAAGCATAACCAACTTACAGTTATAC 57.842 33.333 0.00 0.00 36.03 1.47
5908 6612 6.261381 GTCCACCAACTTGTGTAAAATAGTCA 59.739 38.462 0.00 0.00 34.35 3.41
5929 6633 3.757493 GAGTCTCTCTAGAAAACCGTCCA 59.243 47.826 0.00 0.00 32.16 4.02
5931 6635 4.696402 TCTGAGTCTCTCTAGAAAACCGTC 59.304 45.833 0.65 0.00 32.16 4.79
5934 6638 6.524101 ACATCTGAGTCTCTCTAGAAAACC 57.476 41.667 0.65 0.00 32.16 3.27
6015 6719 8.567948 GTGGAAAGATTTCTCTTCATGTTTGTA 58.432 33.333 5.37 0.00 40.93 2.41
6022 6726 6.152323 CACCATGTGGAAAGATTTCTCTTCAT 59.848 38.462 5.96 3.43 38.54 2.57
6108 6816 1.136828 TAGCTTCCCCACTTGTGTGT 58.863 50.000 0.00 0.00 42.34 3.72
6470 7198 3.256824 TAAGACAAACGGGGGCGGG 62.257 63.158 0.00 0.00 0.00 6.13
6471 7199 2.036571 GTAAGACAAACGGGGGCGG 61.037 63.158 0.00 0.00 0.00 6.13
6472 7200 1.296056 CTGTAAGACAAACGGGGGCG 61.296 60.000 0.00 0.00 34.07 6.13
6473 7201 0.035739 TCTGTAAGACAAACGGGGGC 59.964 55.000 0.00 0.00 38.67 5.80
6488 7216 5.464030 ACGGTAAGTTGTTCTGTATCTGT 57.536 39.130 0.00 0.00 0.00 3.41
6652 7406 3.625897 CACCCCACAGACCGCAGA 61.626 66.667 0.00 0.00 0.00 4.26
6656 7410 3.238497 TCCACACCCCACAGACCG 61.238 66.667 0.00 0.00 0.00 4.79
6792 7546 1.739067 GGCACTAGACCCACATGAAC 58.261 55.000 0.00 0.00 0.00 3.18
6837 7600 6.940867 AGGGTAAGGTTGAACATTCTTCTTAC 59.059 38.462 0.00 5.12 35.94 2.34
6874 7637 1.500396 CGGTAGAAAACAAGGGCGC 59.500 57.895 0.00 0.00 0.00 6.53
6875 7638 1.303091 CCCGGTAGAAAACAAGGGCG 61.303 60.000 0.00 0.00 39.67 6.13
6876 7639 2.563297 CCCGGTAGAAAACAAGGGC 58.437 57.895 0.00 0.00 39.67 5.19
6877 7640 0.250989 TGCCCGGTAGAAAACAAGGG 60.251 55.000 0.00 4.22 45.45 3.95
6880 7643 1.883275 CACATGCCCGGTAGAAAACAA 59.117 47.619 0.00 0.00 0.00 2.83
6887 7658 1.752498 TGTACTACACATGCCCGGTAG 59.248 52.381 0.00 10.93 40.19 3.18
6905 7676 7.778185 AAGTAACATTGTACTCCTCTACTGT 57.222 36.000 0.00 0.00 33.05 3.55
6906 7677 8.958506 AGTAAGTAACATTGTACTCCTCTACTG 58.041 37.037 0.00 0.00 33.05 2.74
6908 7679 8.189460 CCAGTAAGTAACATTGTACTCCTCTAC 58.811 40.741 0.00 0.00 33.05 2.59
6909 7680 7.341256 CCCAGTAAGTAACATTGTACTCCTCTA 59.659 40.741 0.00 0.00 33.05 2.43
6910 7681 6.154706 CCCAGTAAGTAACATTGTACTCCTCT 59.845 42.308 0.00 0.00 33.05 3.69
6911 7682 6.338937 CCCAGTAAGTAACATTGTACTCCTC 58.661 44.000 0.00 0.00 33.05 3.71
6935 7711 1.000496 GTAGCTGCCCGATGTACTACC 60.000 57.143 0.00 0.00 0.00 3.18
7142 7946 7.580600 ACTCGTTTTTCTTTTGTTTTGCAAAT 58.419 26.923 13.65 0.00 45.38 2.32
7170 7974 0.721718 GACGACGATTTCTGCCAAGG 59.278 55.000 0.00 0.00 0.00 3.61
7191 8003 4.267536 ACACAAACATCCCATCTCATCAG 58.732 43.478 0.00 0.00 0.00 2.90
7192 8004 4.305539 ACACAAACATCCCATCTCATCA 57.694 40.909 0.00 0.00 0.00 3.07
7193 8005 5.183713 TCAAACACAAACATCCCATCTCATC 59.816 40.000 0.00 0.00 0.00 2.92
7194 8006 5.078949 TCAAACACAAACATCCCATCTCAT 58.921 37.500 0.00 0.00 0.00 2.90
7195 8007 4.468713 TCAAACACAAACATCCCATCTCA 58.531 39.130 0.00 0.00 0.00 3.27
7196 8008 5.649782 ATCAAACACAAACATCCCATCTC 57.350 39.130 0.00 0.00 0.00 2.75
7197 8009 6.041865 TGAAATCAAACACAAACATCCCATCT 59.958 34.615 0.00 0.00 0.00 2.90
7199 8011 6.172136 TGAAATCAAACACAAACATCCCAT 57.828 33.333 0.00 0.00 0.00 4.00
7200 8012 5.604758 TGAAATCAAACACAAACATCCCA 57.395 34.783 0.00 0.00 0.00 4.37
7201 8013 6.705381 TGAATGAAATCAAACACAAACATCCC 59.295 34.615 0.00 0.00 0.00 3.85
7202 8014 7.652909 TCTGAATGAAATCAAACACAAACATCC 59.347 33.333 0.00 0.00 0.00 3.51
7210 8028 7.217636 CACATCGATCTGAATGAAATCAAACAC 59.782 37.037 0.00 0.00 0.00 3.32
7211 8029 7.245604 CACATCGATCTGAATGAAATCAAACA 58.754 34.615 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.