AutoCloner

Multiple sequence alignment - TraesCS5D01G449200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G449200	chr5D	100.000	4859	0	0	1	4859	498379021	498383879	0.000000e+00	8973.0
1	TraesCS5D01G449200	chr5B	94.688	4104	129	34	777	4859	617683691	617687726	0.000000e+00	6288.0
2	TraesCS5D01G449200	chr5B	95.125	759	30	5	1	758	701467333	701468085	0.000000e+00	1190.0
3	TraesCS5D01G449200	chr5A	96.420	2821	75	14	2051	4859	622545109	622547915	0.000000e+00	4626.0
4	TraesCS5D01G449200	chr5A	92.921	777	47	4	1258	2030	622544150	622544922	0.000000e+00	1123.0
5	TraesCS5D01G449200	chr5A	91.977	349	9	11	777	1118	622543408	622543744	5.690000e-129	472.0
6	TraesCS5D01G449200	chr7A	95.789	760	31	1	1	760	206576291	206577049	0.000000e+00	1225.0
7	TraesCS5D01G449200	chr7A	81.884	138	24	1	1077	1214	14364988	14365124	1.110000e-21	115.0
8	TraesCS5D01G449200	chr1B	95.294	765	29	3	1	758	666991312	666990548	0.000000e+00	1206.0
9	TraesCS5D01G449200	chr1B	94.993	759	32	4	1	758	23818355	23819108	0.000000e+00	1186.0
10	TraesCS5D01G449200	chr3B	93.822	777	35	4	1	770	487852892	487852122	0.000000e+00	1157.0
11	TraesCS5D01G449200	chr2B	94.211	760	33	3	6	758	573751879	573752634	0.000000e+00	1149.0
12	TraesCS5D01G449200	chr2B	77.536	138	19	3	1077	1214	794431896	794432021	6.750000e-09	73.1
13	TraesCS5D01G449200	chr4A	93.840	763	41	3	1	758	706560911	706560150	0.000000e+00	1144.0
14	TraesCS5D01G449200	chr4A	92.641	761	31	12	1	760	324709633	324708897	0.000000e+00	1072.0
15	TraesCS5D01G449200	chr4A	90.564	763	49	14	1	763	551275350	551276089	0.000000e+00	989.0
16	TraesCS5D01G449200	chr1A	93.742	767	39	4	1	761	387225280	387224517	0.000000e+00	1142.0
17	TraesCS5D01G449200	chr1D	84.783	138	21	0	1077	1214	488752056	488751919	6.560000e-29	139.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G449200	chr5D	498379021	498383879	4858	False	8973.000000	8973	100.000000	1	4859	1	chr5D.!!$F1	4858
1	TraesCS5D01G449200	chr5B	617683691	617687726	4035	False	6288.000000	6288	94.688000	777	4859	1	chr5B.!!$F1	4082
2	TraesCS5D01G449200	chr5B	701467333	701468085	752	False	1190.000000	1190	95.125000	1	758	1	chr5B.!!$F2	757
3	TraesCS5D01G449200	chr5A	622543408	622547915	4507	False	2073.666667	4626	93.772667	777	4859	3	chr5A.!!$F1	4082
4	TraesCS5D01G449200	chr7A	206576291	206577049	758	False	1225.000000	1225	95.789000	1	760	1	chr7A.!!$F2	759
5	TraesCS5D01G449200	chr1B	666990548	666991312	764	True	1206.000000	1206	95.294000	1	758	1	chr1B.!!$R1	757
6	TraesCS5D01G449200	chr1B	23818355	23819108	753	False	1186.000000	1186	94.993000	1	758	1	chr1B.!!$F1	757
7	TraesCS5D01G449200	chr3B	487852122	487852892	770	True	1157.000000	1157	93.822000	1	770	1	chr3B.!!$R1	769
8	TraesCS5D01G449200	chr2B	573751879	573752634	755	False	1149.000000	1149	94.211000	6	758	1	chr2B.!!$F1	752
9	TraesCS5D01G449200	chr4A	706560150	706560911	761	True	1144.000000	1144	93.840000	1	758	1	chr4A.!!$R2	757
10	TraesCS5D01G449200	chr4A	324708897	324709633	736	True	1072.000000	1072	92.641000	1	760	1	chr4A.!!$R1	759
11	TraesCS5D01G449200	chr4A	551275350	551276089	739	False	989.000000	989	90.564000	1	763	1	chr4A.!!$F1	762
12	TraesCS5D01G449200	chr1A	387224517	387225280	763	True	1142.000000	1142	93.742000	1	761	1	chr1A.!!$R1	760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
764	788	0.321671	CCAAACGAGGCCTCAGAGAA	59.678	55.0	31.67	0.00	2.87	F
1480	1776	0.180406	GTCATATCCGGTGGCCTGTT	59.820	55.0	3.32	0.00	3.16	F
1739	2044	0.901580	CCTGGGGTCATGCTTTGCTT	60.902	55.0	0.00	0.00	3.91	F
2070	2541	0.956902	TTAAGGTTCGCCGCCCTTTC	60.957	55.0	12.12	41.30	2.62	F
3780	4264	0.179702	TCTGCATGATGCCAGTCTCC	59.820	55.0	15.70	44.23	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1735	2040	0.178767	AGACTGACACTGTGCAAGCA	59.821	50.000	7.9	0.00	3.91	R
3112	3596	1.656587	TCCCAACCAGCAGTACATCT	58.343	50.000	0.0	0.00	2.90	R
3462	3946	2.726821	TGGAGCAAATTCTGGGATGTC	58.273	47.619	0.0	0.00	3.06	R
3825	4309	1.352622	TGGGTTCAGGCTTCACTGGT	61.353	55.000	0.0	38.98	4.00	R
4596	5081	2.034879	ACGCATCAGTCGGCAAAGG	61.035	57.895	0.0	0.00	3.11	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
244	248	6.478344	TCAACAACAAACATTTTGCTATGGAC	59.522	34.615	0.00	0.00	0.00	4.02
251	255	4.012374	ACATTTTGCTATGGACCAGTCAG	58.988	43.478	0.00	0.00	0.00	3.51
405	411	2.159014	ACTTGTGGTTAGCGTCTGTCAA	60.159	45.455	0.00	0.00	0.00	3.18
642	658	1.381872	CGTGATCTCCACCCCTCCT	60.382	63.158	0.00	0.00	42.76	3.69
763	787	0.832135	ACCAAACGAGGCCTCAGAGA	60.832	55.000	31.67	0.00	0.00	3.10
764	788	0.321671	CCAAACGAGGCCTCAGAGAA	59.678	55.000	31.67	0.00	0.00	2.87
765	789	1.674221	CCAAACGAGGCCTCAGAGAAG	60.674	57.143	31.67	16.75	0.00	2.85
772	796	2.186384	CCTCAGAGAAGGCCGCTG	59.814	66.667	5.87	8.52	43.01	5.18
773	797	2.511145	CTCAGAGAAGGCCGCTGC	60.511	66.667	5.87	0.00	41.66	5.25
774	798	2.999648	TCAGAGAAGGCCGCTGCT	61.000	61.111	5.87	0.00	41.66	4.24
775	799	2.511145	CAGAGAAGGCCGCTGCTC	60.511	66.667	5.87	7.40	35.96	4.26
915	945	4.116328	CTCACGCTCGCCGAGGAA	62.116	66.667	16.95	0.32	41.02	3.36
1402	1698	2.038329	CCTCCCCCACAGGTACGA	59.962	66.667	0.00	0.00	0.00	3.43
1409	1705	0.537188	CCCACAGGTACGATTCTGCT	59.463	55.000	0.00	0.00	34.57	4.24
1411	1707	1.645034	CACAGGTACGATTCTGCTGG	58.355	55.000	0.00	0.00	34.57	4.85
1456	1752	8.219105	GCTTTGAATTTTCAGAATTTGTGCTAG	58.781	33.333	0.00	0.00	38.61	3.42
1480	1776	0.180406	GTCATATCCGGTGGCCTGTT	59.820	55.000	3.32	0.00	0.00	3.16
1608	1904	2.969238	GATCCCCACAGCATCGCG	60.969	66.667	0.00	0.00	0.00	5.87
1735	2040	2.037847	GGCCTGGGGTCATGCTTT	59.962	61.111	0.00	0.00	35.34	3.51
1736	2041	2.353610	GGCCTGGGGTCATGCTTTG	61.354	63.158	0.00	0.00	35.34	2.77
1737	2042	3.010413	GCCTGGGGTCATGCTTTGC	62.010	63.158	0.00	0.00	32.80	3.68
1738	2043	1.304713	CCTGGGGTCATGCTTTGCT	60.305	57.895	0.00	0.00	0.00	3.91
1739	2044	0.901580	CCTGGGGTCATGCTTTGCTT	60.902	55.000	0.00	0.00	0.00	3.91
2005	2310	9.612066	TGACTACTCATATGTCATTTTGCAATA	57.388	29.630	0.00	0.00	36.03	1.90
2019	2324	8.243426	TCATTTTGCAATAATCCTGTTACTCAC	58.757	33.333	0.00	0.00	0.00	3.51
2030	2335	8.498054	AATCCTGTTACTCACTGAATGTTATG	57.502	34.615	0.00	0.00	0.00	1.90
2031	2336	7.004555	TCCTGTTACTCACTGAATGTTATGT	57.995	36.000	0.00	0.00	0.00	2.29
2032	2337	6.873605	TCCTGTTACTCACTGAATGTTATGTG	59.126	38.462	0.00	0.00	0.00	3.21
2062	2533	6.791887	AAGTAACTAACTTTAAGGTTCGCC	57.208	37.500	6.20	0.00	46.61	5.54
2066	2537	1.239296	AACTTTAAGGTTCGCCGCCC	61.239	55.000	0.00	0.00	43.66	6.13
2068	2539	0.958876	CTTTAAGGTTCGCCGCCCTT	60.959	55.000	11.68	11.68	43.41	3.95
2070	2541	0.956902	TTAAGGTTCGCCGCCCTTTC	60.957	55.000	12.12	0.00	41.30	2.62
2084	2555	6.459161	CGCCGCCCTTTCTAAACTTAATTATT	60.459	38.462	0.00	0.00	0.00	1.40
2085	2556	7.254863	CGCCGCCCTTTCTAAACTTAATTATTA	60.255	37.037	0.00	0.00	0.00	0.98
2086	2557	8.407832	GCCGCCCTTTCTAAACTTAATTATTAA	58.592	33.333	0.00	0.00	0.00	1.40
2413	2886	4.202050	GGGGTCATGATGTGCTGAAAATAC	60.202	45.833	0.00	0.00	0.00	1.89
2490	2963	9.778741	AAAGATATTATTTTCTATCACGCTCCA	57.221	29.630	0.00	0.00	0.00	3.86
2519	2992	6.127619	GCTTTGTATATGCCTTCCTTTTGAGT	60.128	38.462	0.00	0.00	0.00	3.41
2544	3017	8.702819	GTTAATCTAGTGAGTACCCTGGTAATT	58.297	37.037	0.00	0.00	31.86	1.40
2768	3244	6.875726	TCACTATGCTATTGGATATGAACTGC	59.124	38.462	0.00	0.00	0.00	4.40
2783	3259	1.774110	ACTGCCAACAACCATTGTGA	58.226	45.000	0.00	0.00	44.59	3.58
3137	3621	1.109323	ACTGCTGGTTGGGAAAGCAC	61.109	55.000	0.00	0.00	41.83	4.40
3174	3658	8.076178	GCCATGAATATACCAATCAAAGTACAC	58.924	37.037	0.00	0.00	0.00	2.90
3203	3687	8.437360	TGTCTTGGTTTATTATACTGAGCATG	57.563	34.615	0.00	0.00	0.00	4.06
3219	3703	6.540189	ACTGAGCATGGCTATAAAAAGTACAG	59.460	38.462	0.00	0.00	39.88	2.74
3223	3707	8.383318	AGCATGGCTATAAAAAGTACAGTATG	57.617	34.615	0.00	0.00	38.97	2.39
3271	3755	4.527944	CATTCCCCTTCCTTTACTCCTTC	58.472	47.826	0.00	0.00	0.00	3.46
3292	3776	6.455360	TTCAGAAATTGGCTATCAACATCC	57.545	37.500	0.00	0.00	38.31	3.51
3375	3859	7.564660	TCCATTCAGCACCTTATTTCCATTATT	59.435	33.333	0.00	0.00	0.00	1.40
3423	3907	8.410141	TGTTCGTCCTTCTTGTTAAAAATCATT	58.590	29.630	0.00	0.00	0.00	2.57
3455	3939	1.271102	CTATCAGAGGCCCGTTAGAGC	59.729	57.143	0.00	0.00	0.00	4.09
3462	3946	1.153549	GCCCGTTAGAGCACCTGAG	60.154	63.158	0.00	0.00	0.00	3.35
3563	4047	5.284582	AGAATAAATCTGTCTGGGAGTCCT	58.715	41.667	9.58	0.00	36.88	3.85
3753	4237	3.513662	CGCAATGCAATTTCTCCAATCA	58.486	40.909	5.91	0.00	31.22	2.57
3780	4264	0.179702	TCTGCATGATGCCAGTCTCC	59.820	55.000	15.70	0.00	44.23	3.71
3825	4309	0.179004	AACATTCACAGGACGGCCAA	60.179	50.000	11.69	0.00	36.29	4.52
4067	4551	7.418483	CCCTTTTCCATCTTTTGTTCAAAGGTA	60.418	37.037	0.00	0.00	42.18	3.08
4565	5050	7.083062	TCAGTCCATAAAAGCCATCATCTAT	57.917	36.000	0.00	0.00	0.00	1.98
4596	5081	1.052617	GGCCTACTTCCCCAGATCTC	58.947	60.000	0.00	0.00	0.00	2.75
4616	5101	2.244436	CTTTGCCGACTGATGCGTGG	62.244	60.000	0.00	0.00	0.00	4.94
4679	5165	4.580580	GGTTTTCTTGAGATTGTGGACTGT	59.419	41.667	0.00	0.00	0.00	3.55
4779	5266	2.094494	AGCTCACTGACTTGATACGTGG	60.094	50.000	0.00	0.00	0.00	4.94
4820	5307	6.384015	AGTTCATAGGTTGTGAGATGACCATA	59.616	38.462	0.00	0.00	35.89	2.74
4837	5324	9.764363	GATGACCATACACAGACTTTATCAATA	57.236	33.333	0.00	0.00	0.00	1.90
4841	5328	8.548877	ACCATACACAGACTTTATCAATACCTT	58.451	33.333	0.00	0.00	0.00	3.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
115	116	6.116126	AGAAAGAACAGTGTTCTTGCTACTT	58.884	36.000	40.46	28.40	41.42	2.24
116	117	5.675538	AGAAAGAACAGTGTTCTTGCTACT	58.324	37.500	40.46	31.84	41.42	2.57
124	125	5.633182	TGCAAAACAAGAAAGAACAGTGTTC	59.367	36.000	25.51	25.51	31.41	3.18
244	248	1.843368	AAATGCCCATGTCTGACTGG	58.157	50.000	9.51	12.99	0.00	4.00
276	282	9.784680	GCTAGAAATCCAGCAATAATAATCATG	57.215	33.333	0.00	0.00	37.73	3.07
280	286	6.942576	ACGGCTAGAAATCCAGCAATAATAAT	59.057	34.615	3.37	0.00	39.63	1.28
405	411	5.304101	TCAGCAAAATAACACTTCAACCCAT	59.696	36.000	0.00	0.00	0.00	4.00
619	635	1.338136	GGGGTGGAGATCACGTCCAT	61.338	60.000	5.54	0.00	45.91	3.41
642	658	0.467290	GCCAGTTTGGTCAACAGGGA	60.467	55.000	0.00	0.00	41.44	4.20
763	787	2.127869	TCGATAGAGCAGCGGCCTT	61.128	57.895	4.82	0.00	42.67	4.35
764	788	2.519541	TCGATAGAGCAGCGGCCT	60.520	61.111	4.82	5.13	42.67	5.19
774	798	6.745200	GCCGACAGGTTGTGATTCGATAGA	62.745	50.000	0.00	0.00	41.78	1.98
775	799	3.116300	CCGACAGGTTGTGATTCGATAG	58.884	50.000	0.00	0.00	28.39	2.08
833	857	4.434520	CTTTATTCACTCGGAAGTCCTCC	58.565	47.826	0.00	0.00	39.30	4.30
834	858	4.434520	CCTTTATTCACTCGGAAGTCCTC	58.565	47.826	0.00	0.00	39.30	3.71
835	859	3.197983	CCCTTTATTCACTCGGAAGTCCT	59.802	47.826	0.00	0.00	39.30	3.85
836	860	3.197116	TCCCTTTATTCACTCGGAAGTCC	59.803	47.826	0.00	0.00	39.30	3.85
838	862	3.197983	CCTCCCTTTATTCACTCGGAAGT	59.802	47.826	0.00	0.00	39.30	3.01
839	863	3.798202	CCTCCCTTTATTCACTCGGAAG	58.202	50.000	0.00	0.00	39.30	3.46
840	864	2.093128	GCCTCCCTTTATTCACTCGGAA	60.093	50.000	0.00	0.00	40.46	4.30
841	865	1.485066	GCCTCCCTTTATTCACTCGGA	59.515	52.381	0.00	0.00	0.00	4.55
1242	1273	1.673920	GTTTCTTTGTGTTGGGCGAGA	59.326	47.619	0.00	0.00	0.00	4.04
1248	1279	1.528248	CGCGCGTTTCTTTGTGTTGG	61.528	55.000	24.19	0.00	0.00	3.77
1253	1284	2.351888	GCACGCGCGTTTCTTTGT	60.352	55.556	35.90	5.97	0.00	2.83
1254	1285	3.091022	GGCACGCGCGTTTCTTTG	61.091	61.111	35.90	22.13	39.92	2.77
1402	1698	2.088950	GCACAATTTGCCAGCAGAAT	57.911	45.000	0.00	0.00	46.63	2.40
1424	1720	9.991388	CAAATTCTGAAAATTCAAAGCTGAAAA	57.009	25.926	0.00	0.00	44.64	2.29
1456	1752	1.956170	CCACCGGATATGACGCAGC	60.956	63.158	9.46	0.00	0.00	5.25
1480	1776	2.582052	GTGGAACATCTGAAACCCACA	58.418	47.619	0.00	0.00	44.52	4.17
1590	1886	2.190313	GCGATGCTGTGGGGATCA	59.810	61.111	0.00	0.00	41.94	2.92
1608	1904	5.694995	TGAATGAATTCCATTACCCTCTCC	58.305	41.667	2.27	0.00	45.00	3.71
1735	2040	0.178767	AGACTGACACTGTGCAAGCA	59.821	50.000	7.90	0.00	0.00	3.91
1736	2041	0.585357	CAGACTGACACTGTGCAAGC	59.415	55.000	7.90	2.86	0.00	4.01
1737	2042	1.945387	ACAGACTGACACTGTGCAAG	58.055	50.000	10.08	8.16	45.19	4.01
2005	2310	8.103305	ACATAACATTCAGTGAGTAACAGGATT	58.897	33.333	0.00	0.00	0.00	3.01
2006	2311	7.550551	CACATAACATTCAGTGAGTAACAGGAT	59.449	37.037	0.00	0.00	33.99	3.24
2007	2312	6.873605	CACATAACATTCAGTGAGTAACAGGA	59.126	38.462	0.00	0.00	33.99	3.86
2037	2342	7.201384	CGGCGAACCTTAAAGTTAGTTACTTAG	60.201	40.741	0.00	0.00	46.34	2.18
2038	2343	6.586082	CGGCGAACCTTAAAGTTAGTTACTTA	59.414	38.462	0.00	0.00	46.34	2.24
2044	2349	2.071540	GCGGCGAACCTTAAAGTTAGT	58.928	47.619	12.98	0.00	0.00	2.24
2045	2350	1.395954	GGCGGCGAACCTTAAAGTTAG	59.604	52.381	12.98	0.00	0.00	2.34
2046	2351	1.441738	GGCGGCGAACCTTAAAGTTA	58.558	50.000	12.98	0.00	0.00	2.24
2047	2352	1.239296	GGGCGGCGAACCTTAAAGTT	61.239	55.000	12.98	0.00	0.00	2.66
2048	2353	1.673337	GGGCGGCGAACCTTAAAGT	60.673	57.895	12.98	0.00	0.00	2.66
2049	2354	0.958876	AAGGGCGGCGAACCTTAAAG	60.959	55.000	27.41	0.00	44.92	1.85
2059	2530	1.729284	TAAGTTTAGAAAGGGCGGCG	58.271	50.000	0.51	0.51	0.00	6.46
2086	2557	9.486497	CACAATCATACAACTGCTAGAGATATT	57.514	33.333	0.00	0.00	0.00	1.28
2108	2581	3.550820	ACAGCCTGACATACAAACACAA	58.449	40.909	0.00	0.00	0.00	3.33
2490	2963	8.416329	CAAAAGGAAGGCATATACAAAGCTTAT	58.584	33.333	0.00	0.00	0.00	1.73
2519	2992	8.849543	AATTACCAGGGTACTCACTAGATTAA	57.150	34.615	0.00	0.00	0.00	1.40
2768	3244	7.493971	TCAAACTAAAATCACAATGGTTGTTGG	59.506	33.333	0.00	0.00	43.23	3.77
2783	3259	8.314021	GGAATCAAGGTTCCATCAAACTAAAAT	58.686	33.333	7.22	0.00	45.63	1.82
3112	3596	1.656587	TCCCAACCAGCAGTACATCT	58.343	50.000	0.00	0.00	0.00	2.90
3174	3658	9.774742	GCTCAGTATAATAAACCAAGACAAAAG	57.225	33.333	0.00	0.00	0.00	2.27
3176	3660	8.856153	TGCTCAGTATAATAAACCAAGACAAA	57.144	30.769	0.00	0.00	0.00	2.83
3203	3687	7.787725	ACTGCATACTGTACTTTTTATAGCC	57.212	36.000	0.00	0.00	0.00	3.93
3271	3755	6.461110	AAGGATGTTGATAGCCAATTTCTG	57.539	37.500	0.00	0.00	37.08	3.02
3423	3907	6.351033	CGGGCCTCTGATAGCAATAAGTATAA	60.351	42.308	0.84	0.00	0.00	0.98
3455	3939	3.641434	AATTCTGGGATGTCTCAGGTG	57.359	47.619	9.87	0.00	0.00	4.00
3462	3946	2.726821	TGGAGCAAATTCTGGGATGTC	58.273	47.619	0.00	0.00	0.00	3.06
3563	4047	9.425248	AAGATATGGCAATTTAGAGATGGAAAA	57.575	29.630	0.00	0.00	0.00	2.29
3753	4237	1.390565	GCATCATGCAGAGAGCCTTT	58.609	50.000	4.20	0.00	44.26	3.11
3780	4264	3.244665	TGTCATAGATAGCCATGGCAAGG	60.245	47.826	37.18	18.29	44.88	3.61
3825	4309	1.352622	TGGGTTCAGGCTTCACTGGT	61.353	55.000	0.00	0.00	38.98	4.00
4565	5050	5.014202	GGGAAGTAGGCCATTACAGAAAAA	58.986	41.667	5.01	0.00	0.00	1.94
4596	5081	2.034879	ACGCATCAGTCGGCAAAGG	61.035	57.895	0.00	0.00	0.00	3.11
4679	5165	2.290896	CCAGGCTGTAGATTCCCACAAA	60.291	50.000	14.43	0.00	0.00	2.83
4779	5266	3.635331	TGAACTAGTAACAGCACACGAC	58.365	45.455	0.00	0.00	0.00	4.34
4820	5307	5.648092	GGCAAGGTATTGATAAAGTCTGTGT	59.352	40.000	0.00	0.00	38.83	3.72
4837	5324	2.234143	GAGAAAGAAGCTTGGCAAGGT	58.766	47.619	25.17	25.17	41.85	3.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.