Multiple sequence alignment - TraesCS5D01G448100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G448100 chr5D 100.000 7984 0 0 1 7984 497861350 497869333 0.000000e+00 14744.0
1 TraesCS5D01G448100 chr5D 91.509 212 16 1 7775 7984 57820409 57820620 2.820000e-74 291.0
2 TraesCS5D01G448100 chr5D 90.000 120 11 1 441 560 328245766 328245884 3.860000e-33 154.0
3 TraesCS5D01G448100 chr5B 94.066 3050 104 26 2523 5534 617137689 617140699 0.000000e+00 4558.0
4 TraesCS5D01G448100 chr5B 95.154 1589 59 7 5532 7104 617140642 617142228 0.000000e+00 2492.0
5 TraesCS5D01G448100 chr5B 90.635 1260 80 16 1295 2524 617136353 617137604 0.000000e+00 1639.0
6 TraesCS5D01G448100 chr5B 95.464 507 17 4 750 1251 617135850 617136355 0.000000e+00 804.0
7 TraesCS5D01G448100 chr5B 94.952 416 20 1 7284 7699 617167662 617168076 0.000000e+00 651.0
8 TraesCS5D01G448100 chr5B 92.281 285 22 0 268 552 617134087 617134371 9.650000e-109 405.0
9 TraesCS5D01G448100 chr5B 94.737 209 10 1 7777 7984 617171580 617171788 2.780000e-84 324.0
10 TraesCS5D01G448100 chr5B 95.833 192 5 3 7094 7284 617142304 617142493 2.800000e-79 307.0
11 TraesCS5D01G448100 chr5B 93.711 159 8 1 1 157 617123755 617123913 3.720000e-58 237.0
12 TraesCS5D01G448100 chr5B 84.545 110 11 4 546 653 236555571 236555676 3.940000e-18 104.0
13 TraesCS5D01G448100 chr5B 84.545 110 11 4 546 653 471226057 471226162 3.940000e-18 104.0
14 TraesCS5D01G448100 chr5A 87.491 2750 218 54 1295 3958 622046689 622049398 0.000000e+00 3057.0
15 TraesCS5D01G448100 chr5A 90.977 1740 116 25 5625 7340 622051718 622053440 0.000000e+00 2305.0
16 TraesCS5D01G448100 chr5A 92.732 798 48 6 4409 5204 622050272 622051061 0.000000e+00 1144.0
17 TraesCS5D01G448100 chr5A 94.839 465 22 2 788 1251 622046228 622046691 0.000000e+00 725.0
18 TraesCS5D01G448100 chr5A 86.005 443 41 11 4066 4498 622049841 622050272 9.450000e-124 455.0
19 TraesCS5D01G448100 chr5A 84.716 458 39 12 5184 5622 622051220 622051665 5.720000e-116 429.0
20 TraesCS5D01G448100 chr5A 89.680 281 16 2 7439 7717 622054697 622054966 5.930000e-91 346.0
21 TraesCS5D01G448100 chr1D 92.237 219 12 5 7770 7984 33985194 33985411 1.010000e-78 305.0
22 TraesCS5D01G448100 chr1D 89.831 118 12 0 443 560 285439753 285439636 1.390000e-32 152.0
23 TraesCS5D01G448100 chr1A 92.237 219 12 5 7770 7984 32546441 32546658 1.010000e-78 305.0
24 TraesCS5D01G448100 chr6D 91.469 211 17 1 7775 7984 53175165 53174955 1.010000e-73 289.0
25 TraesCS5D01G448100 chr6D 90.367 218 18 3 7770 7984 50957195 50957412 4.720000e-72 283.0
26 TraesCS5D01G448100 chr6D 91.453 117 10 0 442 558 266648652 266648536 2.310000e-35 161.0
27 TraesCS5D01G448100 chr6B 91.469 211 17 1 7775 7984 120594569 120594359 1.010000e-73 289.0
28 TraesCS5D01G448100 chr6B 90.995 211 18 1 7775 7984 120316621 120316411 4.720000e-72 283.0
29 TraesCS5D01G448100 chr6A 90.995 211 18 1 7775 7984 64167012 64166802 4.720000e-72 283.0
30 TraesCS5D01G448100 chr6A 85.897 78 10 1 684 760 412795750 412795673 1.850000e-11 82.4
31 TraesCS5D01G448100 chr4B 82.069 290 35 7 1295 1576 18724033 18724313 1.730000e-56 231.0
32 TraesCS5D01G448100 chr4B 89.831 118 12 0 443 560 232098794 232098677 1.390000e-32 152.0
33 TraesCS5D01G448100 chr4B 84.545 110 11 4 546 653 189886714 189886819 3.940000e-18 104.0
34 TraesCS5D01G448100 chr4D 90.756 119 11 0 442 560 114578956 114579074 8.290000e-35 159.0
35 TraesCS5D01G448100 chr4D 90.678 118 11 0 443 560 233079444 233079327 2.980000e-34 158.0
36 TraesCS5D01G448100 chr1B 90.000 120 11 1 442 560 562893903 562894022 3.860000e-33 154.0
37 TraesCS5D01G448100 chr1B 84.685 111 9 6 546 653 197625436 197625331 3.940000e-18 104.0
38 TraesCS5D01G448100 chr1B 84.545 110 11 4 546 653 487903624 487903729 3.940000e-18 104.0
39 TraesCS5D01G448100 chr2D 88.281 128 12 3 434 560 74146844 74146969 4.990000e-32 150.0
40 TraesCS5D01G448100 chr2D 88.312 77 8 1 684 759 459573569 459573493 3.070000e-14 91.6
41 TraesCS5D01G448100 chr2D 87.013 77 9 1 684 759 221000968 221000892 1.430000e-12 86.1
42 TraesCS5D01G448100 chrUn 84.545 110 11 4 546 653 265882294 265882399 3.940000e-18 104.0
43 TraesCS5D01G448100 chrUn 84.545 110 11 4 546 653 282866080 282866185 3.940000e-18 104.0
44 TraesCS5D01G448100 chr7B 84.685 111 9 6 546 653 531334804 531334699 3.940000e-18 104.0
45 TraesCS5D01G448100 chr2B 84.545 110 11 4 546 653 725262471 725262366 3.940000e-18 104.0
46 TraesCS5D01G448100 chr2B 85.714 84 10 2 684 765 79772599 79772516 3.970000e-13 87.9
47 TraesCS5D01G448100 chr2B 85.714 84 10 2 684 765 293532120 293532037 3.970000e-13 87.9
48 TraesCS5D01G448100 chr4A 89.610 77 7 1 684 759 211380405 211380481 6.590000e-16 97.1
49 TraesCS5D01G448100 chr4A 84.524 84 11 2 684 765 203130029 203130112 1.850000e-11 82.4
50 TraesCS5D01G448100 chr3D 87.013 77 9 1 684 759 491675837 491675761 1.430000e-12 86.1
51 TraesCS5D01G448100 chr7A 85.000 80 11 1 684 762 284741131 284741052 6.640000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G448100 chr5D 497861350 497869333 7983 False 14744.000000 14744 100.000000 1 7984 1 chr5D.!!$F3 7983
1 TraesCS5D01G448100 chr5B 617134087 617142493 8406 False 1700.833333 4558 93.905500 268 7284 6 chr5B.!!$F4 7016
2 TraesCS5D01G448100 chr5B 617167662 617171788 4126 False 487.500000 651 94.844500 7284 7984 2 chr5B.!!$F5 700
3 TraesCS5D01G448100 chr5A 622046228 622054966 8738 False 1208.714286 3057 89.491429 788 7717 7 chr5A.!!$F1 6929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 2197 0.178846 TCTCCCCAAATCCACCTCCA 60.179 55.000 0.00 0.0 0.00 3.86 F
1156 2449 0.179018 CCTAAGCCCTCCCCGAATTG 60.179 60.000 0.00 0.0 0.00 2.32 F
1260 2553 0.252103 ACCTTCTCTTCGCCCACCTA 60.252 55.000 0.00 0.0 0.00 3.08 F
1346 2639 0.593128 GCAGTCGTGGATTTTGCTGT 59.407 50.000 0.00 0.0 0.00 4.40 F
2312 3646 1.141053 GATCCTGGCGGTGTCCTAAAT 59.859 52.381 0.00 0.0 0.00 1.40 F
3868 5359 0.107456 CACTGTGTGAGCTGGTTCCT 59.893 55.000 0.00 0.0 35.23 3.36 F
4047 5540 0.036105 ACCGCATGAGTCATGAGCAA 60.036 50.000 32.61 0.0 43.81 3.91 F
4124 5949 0.250989 TTCTTTAGCGTGGGTTGGGG 60.251 55.000 0.00 0.0 0.00 4.96 F
5523 7667 0.629058 AAAATCTATGCCCACCGGGT 59.371 50.000 6.32 0.0 46.51 5.28 F
6091 8292 1.072266 TGTGTACAATGAAGGGGCCT 58.928 50.000 0.84 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 3617 0.322456 CCGCCAGGATCTCCAACAAA 60.322 55.000 0.00 0.00 41.02 2.83 R
3129 4598 2.408271 TCATGGTTCTGGTGATCAGC 57.592 50.000 18.01 18.01 43.06 4.26 R
3318 4788 3.729163 GCATTCTAGTTCTCAAAAGCCGC 60.729 47.826 0.00 0.00 0.00 6.53 R
3372 4842 7.259882 CCTTATGTACGTACCAATAAGTGACA 58.740 38.462 27.30 11.57 32.90 3.58 R
3959 5452 0.639943 TGGGGTCCATAGAGGCACTA 59.360 55.000 0.00 0.00 41.55 2.74 R
4826 6779 1.160137 GCCTGAAACATTCTGCTCGT 58.840 50.000 0.00 0.00 0.00 4.18 R
5286 7427 3.063180 GCAATTCGGTCACAAGAGATCAG 59.937 47.826 0.00 0.00 0.00 2.90 R
6135 8336 1.373570 CTCCGGTCATCTTCCAAAGC 58.626 55.000 0.00 0.00 0.00 3.51 R
6887 9120 0.828022 ATTCGTAGCACCAATCGGGA 59.172 50.000 0.00 0.00 41.15 5.14 R
7731 11208 0.034337 TACAGCTTCGGTGTGTTCCC 59.966 55.000 8.77 0.00 44.23 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.995526 TGCTTCCCGCATCTCATAG 57.004 52.632 0.00 0.00 45.47 2.23
24 25 0.250038 TGCTTCCCGCATCTCATAGC 60.250 55.000 0.00 0.00 45.47 2.97
25 26 0.250038 GCTTCCCGCATCTCATAGCA 60.250 55.000 0.00 0.00 38.92 3.49
26 27 1.793258 CTTCCCGCATCTCATAGCAG 58.207 55.000 0.00 0.00 0.00 4.24
27 28 1.069823 CTTCCCGCATCTCATAGCAGT 59.930 52.381 0.00 0.00 0.00 4.40
28 29 1.123077 TCCCGCATCTCATAGCAGTT 58.877 50.000 0.00 0.00 0.00 3.16
29 30 1.069204 TCCCGCATCTCATAGCAGTTC 59.931 52.381 0.00 0.00 0.00 3.01
30 31 1.069823 CCCGCATCTCATAGCAGTTCT 59.930 52.381 0.00 0.00 0.00 3.01
31 32 2.484417 CCCGCATCTCATAGCAGTTCTT 60.484 50.000 0.00 0.00 0.00 2.52
32 33 3.243873 CCCGCATCTCATAGCAGTTCTTA 60.244 47.826 0.00 0.00 0.00 2.10
33 34 4.562347 CCCGCATCTCATAGCAGTTCTTAT 60.562 45.833 0.00 0.00 0.00 1.73
34 35 4.388165 CCGCATCTCATAGCAGTTCTTATG 59.612 45.833 0.00 0.00 0.00 1.90
35 36 4.143158 CGCATCTCATAGCAGTTCTTATGC 60.143 45.833 0.00 0.00 44.18 3.14
36 37 4.753610 GCATCTCATAGCAGTTCTTATGCA 59.246 41.667 0.00 0.00 46.31 3.96
37 38 5.333952 GCATCTCATAGCAGTTCTTATGCAC 60.334 44.000 0.00 0.00 46.31 4.57
38 39 4.697514 TCTCATAGCAGTTCTTATGCACC 58.302 43.478 0.00 0.00 46.31 5.01
39 40 3.808728 TCATAGCAGTTCTTATGCACCC 58.191 45.455 0.00 0.00 46.31 4.61
40 41 3.455910 TCATAGCAGTTCTTATGCACCCT 59.544 43.478 0.00 0.00 46.31 4.34
41 42 2.409948 AGCAGTTCTTATGCACCCTC 57.590 50.000 0.00 0.00 46.31 4.30
42 43 1.009829 GCAGTTCTTATGCACCCTCG 58.990 55.000 0.00 0.00 43.31 4.63
43 44 1.405526 GCAGTTCTTATGCACCCTCGA 60.406 52.381 0.00 0.00 43.31 4.04
44 45 2.935238 GCAGTTCTTATGCACCCTCGAA 60.935 50.000 0.00 0.00 43.31 3.71
45 46 2.673368 CAGTTCTTATGCACCCTCGAAC 59.327 50.000 0.00 0.00 0.00 3.95
46 47 2.301870 AGTTCTTATGCACCCTCGAACA 59.698 45.455 14.50 0.00 34.71 3.18
47 48 3.071479 GTTCTTATGCACCCTCGAACAA 58.929 45.455 0.00 0.00 33.05 2.83
48 49 3.627395 TCTTATGCACCCTCGAACAAT 57.373 42.857 0.00 0.00 0.00 2.71
49 50 3.950397 TCTTATGCACCCTCGAACAATT 58.050 40.909 0.00 0.00 0.00 2.32
50 51 5.092554 TCTTATGCACCCTCGAACAATTA 57.907 39.130 0.00 0.00 0.00 1.40
51 52 5.680619 TCTTATGCACCCTCGAACAATTAT 58.319 37.500 0.00 0.00 0.00 1.28
52 53 5.758296 TCTTATGCACCCTCGAACAATTATC 59.242 40.000 0.00 0.00 0.00 1.75
53 54 3.342377 TGCACCCTCGAACAATTATCA 57.658 42.857 0.00 0.00 0.00 2.15
54 55 3.006940 TGCACCCTCGAACAATTATCAC 58.993 45.455 0.00 0.00 0.00 3.06
55 56 2.030457 GCACCCTCGAACAATTATCACG 59.970 50.000 0.00 0.00 0.00 4.35
56 57 2.607635 CACCCTCGAACAATTATCACGG 59.392 50.000 0.00 0.00 0.00 4.94
57 58 2.235402 ACCCTCGAACAATTATCACGGT 59.765 45.455 0.00 0.00 0.00 4.83
58 59 2.864343 CCCTCGAACAATTATCACGGTC 59.136 50.000 0.00 0.00 0.00 4.79
59 60 3.430374 CCCTCGAACAATTATCACGGTCT 60.430 47.826 0.00 0.00 0.00 3.85
60 61 4.181578 CCTCGAACAATTATCACGGTCTT 58.818 43.478 0.00 0.00 0.00 3.01
61 62 4.267928 CCTCGAACAATTATCACGGTCTTC 59.732 45.833 0.00 0.00 0.00 2.87
62 63 3.855379 TCGAACAATTATCACGGTCTTCG 59.145 43.478 0.00 0.00 45.88 3.79
71 72 2.264480 CGGTCTTCGTGCCATGGA 59.736 61.111 18.40 0.00 0.00 3.41
72 73 1.153369 CGGTCTTCGTGCCATGGAT 60.153 57.895 18.40 0.00 0.00 3.41
73 74 1.154205 CGGTCTTCGTGCCATGGATC 61.154 60.000 18.40 6.21 0.00 3.36
74 75 1.154205 GGTCTTCGTGCCATGGATCG 61.154 60.000 18.40 18.49 0.00 3.69
75 76 1.143838 TCTTCGTGCCATGGATCGG 59.856 57.895 18.40 7.34 0.00 4.18
76 77 1.143838 CTTCGTGCCATGGATCGGA 59.856 57.895 18.40 12.70 0.00 4.55
77 78 0.250038 CTTCGTGCCATGGATCGGAT 60.250 55.000 18.40 0.00 0.00 4.18
78 79 0.249868 TTCGTGCCATGGATCGGATC 60.250 55.000 18.40 9.54 0.00 3.36
79 80 1.115326 TCGTGCCATGGATCGGATCT 61.115 55.000 18.40 0.00 0.00 2.75
80 81 0.250038 CGTGCCATGGATCGGATCTT 60.250 55.000 18.40 3.42 0.00 2.40
81 82 1.811558 CGTGCCATGGATCGGATCTTT 60.812 52.381 18.40 3.08 0.00 2.52
82 83 2.547855 CGTGCCATGGATCGGATCTTTA 60.548 50.000 18.40 5.47 0.00 1.85
83 84 3.476552 GTGCCATGGATCGGATCTTTAA 58.523 45.455 18.40 2.48 0.00 1.52
84 85 3.882888 GTGCCATGGATCGGATCTTTAAA 59.117 43.478 18.40 0.00 0.00 1.52
85 86 3.882888 TGCCATGGATCGGATCTTTAAAC 59.117 43.478 18.40 0.88 0.00 2.01
86 87 3.882888 GCCATGGATCGGATCTTTAAACA 59.117 43.478 18.40 6.41 0.00 2.83
87 88 4.261197 GCCATGGATCGGATCTTTAAACAC 60.261 45.833 18.40 0.00 0.00 3.32
88 89 4.275936 CCATGGATCGGATCTTTAAACACC 59.724 45.833 16.96 0.00 0.00 4.16
89 90 3.527533 TGGATCGGATCTTTAAACACCG 58.472 45.455 16.96 13.38 44.09 4.94
93 94 2.933906 TCGGATCTTTAAACACCGATGC 59.066 45.455 16.44 8.38 45.87 3.91
94 95 2.675844 CGGATCTTTAAACACCGATGCA 59.324 45.455 14.02 0.00 45.31 3.96
95 96 3.312421 CGGATCTTTAAACACCGATGCAT 59.688 43.478 0.00 0.00 45.31 3.96
96 97 4.509970 CGGATCTTTAAACACCGATGCATA 59.490 41.667 0.00 0.00 45.31 3.14
97 98 5.333339 CGGATCTTTAAACACCGATGCATAG 60.333 44.000 0.00 0.00 45.31 2.23
98 99 5.527582 GGATCTTTAAACACCGATGCATAGT 59.472 40.000 0.00 0.00 0.00 2.12
99 100 6.704493 GGATCTTTAAACACCGATGCATAGTA 59.296 38.462 0.00 0.00 0.00 1.82
100 101 7.095607 GGATCTTTAAACACCGATGCATAGTAG 60.096 40.741 0.00 0.00 0.00 2.57
101 102 5.522460 TCTTTAAACACCGATGCATAGTAGC 59.478 40.000 0.00 0.00 0.00 3.58
112 113 4.486125 TGCATAGTAGCAATGGACAGAA 57.514 40.909 0.00 0.00 42.46 3.02
113 114 4.842574 TGCATAGTAGCAATGGACAGAAA 58.157 39.130 0.00 0.00 42.46 2.52
114 115 4.635765 TGCATAGTAGCAATGGACAGAAAC 59.364 41.667 0.00 0.00 42.46 2.78
115 116 4.878397 GCATAGTAGCAATGGACAGAAACT 59.122 41.667 0.00 0.00 0.00 2.66
116 117 5.355350 GCATAGTAGCAATGGACAGAAACTT 59.645 40.000 0.00 0.00 0.00 2.66
117 118 6.127897 GCATAGTAGCAATGGACAGAAACTTT 60.128 38.462 0.00 0.00 0.00 2.66
118 119 5.695851 AGTAGCAATGGACAGAAACTTTG 57.304 39.130 0.00 0.00 0.00 2.77
119 120 3.375782 AGCAATGGACAGAAACTTTGC 57.624 42.857 0.00 0.00 43.77 3.68
120 121 2.036346 AGCAATGGACAGAAACTTTGCC 59.964 45.455 10.39 0.00 44.21 4.52
121 122 2.224018 GCAATGGACAGAAACTTTGCCA 60.224 45.455 0.00 0.00 40.06 4.92
122 123 3.555586 GCAATGGACAGAAACTTTGCCAT 60.556 43.478 0.00 0.00 40.06 4.40
123 124 4.634199 CAATGGACAGAAACTTTGCCATT 58.366 39.130 0.00 0.00 40.13 3.16
124 125 3.731652 TGGACAGAAACTTTGCCATTG 57.268 42.857 0.00 0.00 0.00 2.82
125 126 3.030291 TGGACAGAAACTTTGCCATTGT 58.970 40.909 0.00 0.00 0.00 2.71
126 127 3.068024 TGGACAGAAACTTTGCCATTGTC 59.932 43.478 0.00 0.00 34.30 3.18
127 128 3.300009 GACAGAAACTTTGCCATTGTCG 58.700 45.455 0.00 0.00 0.00 4.35
128 129 2.034558 ACAGAAACTTTGCCATTGTCGG 59.965 45.455 0.00 0.00 0.00 4.79
129 130 2.293122 CAGAAACTTTGCCATTGTCGGA 59.707 45.455 0.00 0.00 0.00 4.55
130 131 2.293399 AGAAACTTTGCCATTGTCGGAC 59.707 45.455 0.00 0.00 0.00 4.79
131 132 1.981256 AACTTTGCCATTGTCGGACT 58.019 45.000 9.88 0.00 0.00 3.85
132 133 1.981256 ACTTTGCCATTGTCGGACTT 58.019 45.000 9.88 0.00 0.00 3.01
133 134 1.880027 ACTTTGCCATTGTCGGACTTC 59.120 47.619 9.88 0.00 0.00 3.01
134 135 2.154462 CTTTGCCATTGTCGGACTTCT 58.846 47.619 9.88 0.00 0.00 2.85
135 136 2.270352 TTGCCATTGTCGGACTTCTT 57.730 45.000 9.88 0.00 0.00 2.52
136 137 3.410631 TTGCCATTGTCGGACTTCTTA 57.589 42.857 9.88 0.00 0.00 2.10
137 138 3.410631 TGCCATTGTCGGACTTCTTAA 57.589 42.857 9.88 0.00 0.00 1.85
138 139 3.745799 TGCCATTGTCGGACTTCTTAAA 58.254 40.909 9.88 0.00 0.00 1.52
139 140 3.500680 TGCCATTGTCGGACTTCTTAAAC 59.499 43.478 9.88 0.00 0.00 2.01
140 141 3.424433 GCCATTGTCGGACTTCTTAAACG 60.424 47.826 9.88 0.00 0.00 3.60
141 142 3.124636 CCATTGTCGGACTTCTTAAACGG 59.875 47.826 9.88 0.00 0.00 4.44
142 143 1.787012 TGTCGGACTTCTTAAACGGC 58.213 50.000 9.88 0.00 0.00 5.68
143 144 0.712222 GTCGGACTTCTTAAACGGCG 59.288 55.000 4.80 4.80 0.00 6.46
144 145 0.314935 TCGGACTTCTTAAACGGCGT 59.685 50.000 6.77 6.77 0.00 5.68
145 146 0.712222 CGGACTTCTTAAACGGCGTC 59.288 55.000 15.17 0.00 0.00 5.19
146 147 1.787012 GGACTTCTTAAACGGCGTCA 58.213 50.000 15.17 0.51 0.00 4.35
147 148 2.137523 GGACTTCTTAAACGGCGTCAA 58.862 47.619 15.17 10.02 0.00 3.18
148 149 2.545106 GGACTTCTTAAACGGCGTCAAA 59.455 45.455 15.17 10.00 0.00 2.69
149 150 3.187842 GGACTTCTTAAACGGCGTCAAAT 59.812 43.478 15.17 2.65 0.00 2.32
150 151 4.141855 ACTTCTTAAACGGCGTCAAATG 57.858 40.909 15.17 4.45 0.00 2.32
151 152 3.810941 ACTTCTTAAACGGCGTCAAATGA 59.189 39.130 15.17 6.85 0.00 2.57
152 153 4.454504 ACTTCTTAAACGGCGTCAAATGAT 59.545 37.500 15.17 0.00 0.00 2.45
153 154 5.640357 ACTTCTTAAACGGCGTCAAATGATA 59.360 36.000 15.17 0.00 0.00 2.15
154 155 5.459110 TCTTAAACGGCGTCAAATGATAC 57.541 39.130 15.17 0.00 0.00 2.24
155 156 5.172934 TCTTAAACGGCGTCAAATGATACT 58.827 37.500 15.17 0.00 0.00 2.12
156 157 5.640357 TCTTAAACGGCGTCAAATGATACTT 59.360 36.000 15.17 1.78 0.00 2.24
157 158 3.740044 AACGGCGTCAAATGATACTTG 57.260 42.857 15.17 0.00 0.00 3.16
158 159 2.967362 ACGGCGTCAAATGATACTTGA 58.033 42.857 6.77 0.00 0.00 3.02
159 160 3.331150 ACGGCGTCAAATGATACTTGAA 58.669 40.909 6.77 0.00 34.68 2.69
160 161 3.124636 ACGGCGTCAAATGATACTTGAAC 59.875 43.478 6.77 0.00 34.68 3.18
161 162 3.370978 CGGCGTCAAATGATACTTGAACT 59.629 43.478 0.00 0.00 34.68 3.01
162 163 4.651994 GGCGTCAAATGATACTTGAACTG 58.348 43.478 0.00 0.00 34.68 3.16
163 164 4.091424 GCGTCAAATGATACTTGAACTGC 58.909 43.478 0.00 0.00 34.68 4.40
164 165 4.651994 CGTCAAATGATACTTGAACTGCC 58.348 43.478 0.00 0.00 34.68 4.85
165 166 4.437390 CGTCAAATGATACTTGAACTGCCC 60.437 45.833 0.00 0.00 34.68 5.36
166 167 3.689161 TCAAATGATACTTGAACTGCCCG 59.311 43.478 0.00 0.00 29.93 6.13
167 168 3.350219 AATGATACTTGAACTGCCCGT 57.650 42.857 0.00 0.00 0.00 5.28
168 169 2.851263 TGATACTTGAACTGCCCGTT 57.149 45.000 0.00 0.00 38.91 4.44
169 170 3.134574 TGATACTTGAACTGCCCGTTT 57.865 42.857 0.00 0.00 35.56 3.60
170 171 3.482436 TGATACTTGAACTGCCCGTTTT 58.518 40.909 0.00 0.00 35.56 2.43
171 172 3.252215 TGATACTTGAACTGCCCGTTTTG 59.748 43.478 0.00 0.00 35.56 2.44
172 173 1.757682 ACTTGAACTGCCCGTTTTGA 58.242 45.000 0.00 0.00 35.56 2.69
173 174 2.096248 ACTTGAACTGCCCGTTTTGAA 58.904 42.857 0.00 0.00 35.56 2.69
174 175 2.159296 ACTTGAACTGCCCGTTTTGAAC 60.159 45.455 0.00 0.00 35.56 3.18
175 176 1.464734 TGAACTGCCCGTTTTGAACA 58.535 45.000 0.00 0.00 35.56 3.18
176 177 1.819288 TGAACTGCCCGTTTTGAACAA 59.181 42.857 0.00 0.00 35.56 2.83
177 178 2.231478 TGAACTGCCCGTTTTGAACAAA 59.769 40.909 0.00 0.00 35.56 2.83
178 179 3.254892 GAACTGCCCGTTTTGAACAAAA 58.745 40.909 8.37 8.37 37.90 2.44
179 180 3.320673 ACTGCCCGTTTTGAACAAAAA 57.679 38.095 13.13 0.00 41.37 1.94
180 181 3.867857 ACTGCCCGTTTTGAACAAAAAT 58.132 36.364 13.13 0.00 41.37 1.82
181 182 3.620821 ACTGCCCGTTTTGAACAAAAATG 59.379 39.130 13.13 9.43 41.37 2.32
182 183 3.600388 TGCCCGTTTTGAACAAAAATGT 58.400 36.364 13.13 0.00 41.38 2.71
183 184 4.003648 TGCCCGTTTTGAACAAAAATGTT 58.996 34.783 13.13 0.00 41.38 2.71
184 185 4.455877 TGCCCGTTTTGAACAAAAATGTTT 59.544 33.333 13.13 0.00 41.38 2.83
185 186 5.048713 TGCCCGTTTTGAACAAAAATGTTTT 60.049 32.000 13.13 0.00 41.38 2.43
186 187 5.284897 GCCCGTTTTGAACAAAAATGTTTTG 59.715 36.000 13.13 11.02 41.38 2.44
187 188 6.374578 CCCGTTTTGAACAAAAATGTTTTGT 58.625 32.000 12.19 12.19 41.38 2.83
188 189 6.304208 CCCGTTTTGAACAAAAATGTTTTGTG 59.696 34.615 17.27 2.46 41.38 3.33
189 190 7.072030 CCGTTTTGAACAAAAATGTTTTGTGA 58.928 30.769 17.27 7.04 41.38 3.58
190 191 7.268023 CCGTTTTGAACAAAAATGTTTTGTGAG 59.732 33.333 17.27 6.55 41.38 3.51
191 192 8.006590 CGTTTTGAACAAAAATGTTTTGTGAGA 58.993 29.630 17.27 6.09 41.30 3.27
192 193 9.657121 GTTTTGAACAAAAATGTTTTGTGAGAA 57.343 25.926 17.27 10.53 41.30 2.87
196 197 9.434420 TGAACAAAAATGTTTTGTGAGAATTCT 57.566 25.926 17.27 7.95 41.30 2.40
197 198 9.906111 GAACAAAAATGTTTTGTGAGAATTCTC 57.094 29.630 25.68 25.68 41.30 2.87
198 199 9.657419 AACAAAAATGTTTTGTGAGAATTCTCT 57.343 25.926 30.45 9.89 41.30 3.10
199 200 9.090692 ACAAAAATGTTTTGTGAGAATTCTCTG 57.909 29.630 30.45 19.39 40.70 3.35
200 201 8.545420 CAAAAATGTTTTGTGAGAATTCTCTGG 58.455 33.333 30.45 5.21 43.25 3.86
201 202 5.972107 ATGTTTTGTGAGAATTCTCTGGG 57.028 39.130 30.45 0.00 43.25 4.45
202 203 4.792068 TGTTTTGTGAGAATTCTCTGGGT 58.208 39.130 30.45 0.00 43.25 4.51
203 204 5.200483 TGTTTTGTGAGAATTCTCTGGGTT 58.800 37.500 30.45 0.00 43.25 4.11
204 205 5.299279 TGTTTTGTGAGAATTCTCTGGGTTC 59.701 40.000 30.45 18.73 43.25 3.62
205 206 3.703001 TGTGAGAATTCTCTGGGTTCC 57.297 47.619 30.45 13.30 43.25 3.62
206 207 2.305927 TGTGAGAATTCTCTGGGTTCCC 59.694 50.000 30.45 7.42 43.25 3.97
207 208 2.305927 GTGAGAATTCTCTGGGTTCCCA 59.694 50.000 30.45 10.37 43.25 4.37
208 209 2.305927 TGAGAATTCTCTGGGTTCCCAC 59.694 50.000 30.45 6.27 43.25 4.61
209 210 1.279271 AGAATTCTCTGGGTTCCCACG 59.721 52.381 6.46 4.04 32.02 4.94
210 211 0.328258 AATTCTCTGGGTTCCCACGG 59.672 55.000 6.46 3.11 32.02 4.94
211 212 2.198304 ATTCTCTGGGTTCCCACGGC 62.198 60.000 6.46 0.00 32.02 5.68
212 213 3.322466 CTCTGGGTTCCCACGGCT 61.322 66.667 6.46 0.00 32.02 5.52
213 214 1.987855 CTCTGGGTTCCCACGGCTA 60.988 63.158 6.46 0.00 32.02 3.93
214 215 1.536907 TCTGGGTTCCCACGGCTAA 60.537 57.895 6.46 0.00 32.02 3.09
215 216 1.376812 CTGGGTTCCCACGGCTAAC 60.377 63.158 6.46 0.00 32.02 2.34
216 217 1.838073 CTGGGTTCCCACGGCTAACT 61.838 60.000 6.46 0.00 32.02 2.24
217 218 0.544833 TGGGTTCCCACGGCTAACTA 60.545 55.000 6.46 0.00 0.00 2.24
218 219 0.835276 GGGTTCCCACGGCTAACTAT 59.165 55.000 2.59 0.00 0.00 2.12
219 220 1.202615 GGGTTCCCACGGCTAACTATC 60.203 57.143 2.59 0.00 0.00 2.08
220 221 1.483415 GGTTCCCACGGCTAACTATCA 59.517 52.381 0.00 0.00 0.00 2.15
221 222 2.093341 GGTTCCCACGGCTAACTATCAA 60.093 50.000 0.00 0.00 0.00 2.57
222 223 3.433173 GGTTCCCACGGCTAACTATCAAT 60.433 47.826 0.00 0.00 0.00 2.57
223 224 4.196971 GTTCCCACGGCTAACTATCAATT 58.803 43.478 0.00 0.00 0.00 2.32
224 225 3.804036 TCCCACGGCTAACTATCAATTG 58.196 45.455 0.00 0.00 0.00 2.32
225 226 3.452990 TCCCACGGCTAACTATCAATTGA 59.547 43.478 11.26 11.26 0.00 2.57
226 227 4.080807 TCCCACGGCTAACTATCAATTGAA 60.081 41.667 13.09 1.39 0.00 2.69
227 228 4.821805 CCCACGGCTAACTATCAATTGAAT 59.178 41.667 13.09 4.08 0.00 2.57
228 229 5.049405 CCCACGGCTAACTATCAATTGAATC 60.049 44.000 13.09 0.00 0.00 2.52
229 230 5.760253 CCACGGCTAACTATCAATTGAATCT 59.240 40.000 13.09 0.00 0.00 2.40
230 231 6.293081 CCACGGCTAACTATCAATTGAATCTG 60.293 42.308 13.09 5.62 0.00 2.90
231 232 6.258727 CACGGCTAACTATCAATTGAATCTGT 59.741 38.462 13.09 6.24 0.00 3.41
232 233 6.823689 ACGGCTAACTATCAATTGAATCTGTT 59.176 34.615 13.09 15.55 0.00 3.16
233 234 7.336931 ACGGCTAACTATCAATTGAATCTGTTT 59.663 33.333 13.09 3.23 0.00 2.83
234 235 8.826710 CGGCTAACTATCAATTGAATCTGTTTA 58.173 33.333 13.09 4.17 0.00 2.01
243 244 8.939201 TCAATTGAATCTGTTTAACAAAAGCA 57.061 26.923 5.45 0.00 0.00 3.91
244 245 9.376075 TCAATTGAATCTGTTTAACAAAAGCAA 57.624 25.926 5.45 2.93 0.00 3.91
245 246 9.985318 CAATTGAATCTGTTTAACAAAAGCAAA 57.015 25.926 0.00 0.00 0.00 3.68
246 247 9.986833 AATTGAATCTGTTTAACAAAAGCAAAC 57.013 25.926 0.00 0.00 33.70 2.93
247 248 8.770438 TTGAATCTGTTTAACAAAAGCAAACT 57.230 26.923 0.00 0.00 34.12 2.66
248 249 9.862371 TTGAATCTGTTTAACAAAAGCAAACTA 57.138 25.926 0.00 0.00 34.12 2.24
249 250 9.862371 TGAATCTGTTTAACAAAAGCAAACTAA 57.138 25.926 0.00 0.00 34.12 2.24
253 254 9.915629 TCTGTTTAACAAAAGCAAACTAAGAAA 57.084 25.926 0.00 0.00 34.12 2.52
264 265 9.435688 AAAGCAAACTAAGAAAACATTTTCAGT 57.564 25.926 17.12 10.73 46.81 3.41
265 266 8.411318 AGCAAACTAAGAAAACATTTTCAGTG 57.589 30.769 17.12 9.58 46.81 3.66
266 267 8.034804 AGCAAACTAAGAAAACATTTTCAGTGT 58.965 29.630 17.12 7.02 46.81 3.55
299 300 7.721286 AAATATAACGAGAATGAAGCTGGAG 57.279 36.000 0.00 0.00 0.00 3.86
300 301 1.731720 AACGAGAATGAAGCTGGAGC 58.268 50.000 0.00 0.00 42.49 4.70
356 357 5.772521 AGCGTATTTGCAAGTTGATTTTCT 58.227 33.333 7.16 0.00 37.31 2.52
435 436 3.118811 TCATGTGGATTATGACGCTCACA 60.119 43.478 0.00 0.00 39.07 3.58
438 439 3.684305 TGTGGATTATGACGCTCACAAAG 59.316 43.478 0.00 0.00 33.05 2.77
460 461 1.697982 AGTACTGCCTTCGGTCCTTTT 59.302 47.619 0.00 0.00 33.08 2.27
468 469 2.289257 CCTTCGGTCCTTTTTACTCCGT 60.289 50.000 0.00 0.00 41.58 4.69
479 480 9.159364 GTCCTTTTTACTCCGTGTATTAGATTT 57.841 33.333 0.00 0.00 0.00 2.17
489 490 9.968743 CTCCGTGTATTAGATTTTTGTTAAGTC 57.031 33.333 0.00 0.00 0.00 3.01
578 1643 5.776173 ACTACTCTCTTCGTCCCATAATG 57.224 43.478 0.00 0.00 0.00 1.90
583 1648 5.892119 ACTCTCTTCGTCCCATAATGTAAGA 59.108 40.000 0.00 0.00 0.00 2.10
595 1663 6.799925 CCCATAATGTAAGACGTTTTTGACAC 59.200 38.462 0.00 0.00 0.00 3.67
598 1666 9.525007 CATAATGTAAGACGTTTTTGACACTAC 57.475 33.333 0.00 0.00 0.00 2.73
608 1676 7.208080 ACGTTTTTGACACTACATTAGAGTCT 58.792 34.615 10.76 0.00 43.78 3.24
610 1678 8.851416 CGTTTTTGACACTACATTAGAGTCTAG 58.149 37.037 10.76 0.00 43.78 2.43
613 1681 8.865420 TTTGACACTACATTAGAGTCTAGAGT 57.135 34.615 0.00 0.00 43.78 3.24
614 1682 8.495361 TTGACACTACATTAGAGTCTAGAGTC 57.505 38.462 18.38 18.38 43.78 3.36
615 1683 7.621796 TGACACTACATTAGAGTCTAGAGTCA 58.378 38.462 25.87 13.10 43.78 3.41
616 1684 8.101419 TGACACTACATTAGAGTCTAGAGTCAA 58.899 37.037 25.87 18.27 43.78 3.18
617 1685 8.865420 ACACTACATTAGAGTCTAGAGTCAAA 57.135 34.615 25.87 13.07 33.26 2.69
618 1686 9.298250 ACACTACATTAGAGTCTAGAGTCAAAA 57.702 33.333 25.87 19.63 33.26 2.44
641 1709 7.383156 AAAAGGTCTTATATTATGGGACGGA 57.617 36.000 0.00 0.00 0.00 4.69
644 1712 4.161754 GGTCTTATATTATGGGACGGAGGG 59.838 50.000 0.00 0.00 0.00 4.30
662 1730 6.381994 ACGGAGGGAGTATGAAACTACATTTA 59.618 38.462 0.00 0.00 41.38 1.40
663 1731 7.070821 ACGGAGGGAGTATGAAACTACATTTAT 59.929 37.037 0.00 0.00 41.38 1.40
664 1732 7.599245 CGGAGGGAGTATGAAACTACATTTATC 59.401 40.741 0.00 0.00 41.38 1.75
675 1755 9.051679 TGAAACTACATTTATCAATATGGGACG 57.948 33.333 0.00 0.00 0.00 4.79
682 1762 2.184088 TCAATATGGGACGGAGGGAA 57.816 50.000 0.00 0.00 0.00 3.97
695 1775 5.374071 GACGGAGGGAATATATGTTTGGTT 58.626 41.667 0.00 0.00 0.00 3.67
699 1779 7.283807 ACGGAGGGAATATATGTTTGGTTAAAC 59.716 37.037 0.00 0.00 45.04 2.01
769 2058 2.638363 GGGAGGGAGTAGTTTGACAAGT 59.362 50.000 0.00 0.00 0.00 3.16
771 2060 4.322574 GGGAGGGAGTAGTTTGACAAGTAC 60.323 50.000 2.86 2.86 38.62 2.73
808 2100 6.884832 ACATTAGGAGACATGTTTAATCCGA 58.115 36.000 0.00 0.00 35.13 4.55
828 2120 3.365064 CGACGCTACCTAATCGATCACAT 60.365 47.826 0.00 0.00 36.70 3.21
861 2153 3.956314 GTAACCCCACCCGCACCA 61.956 66.667 0.00 0.00 0.00 4.17
905 2197 0.178846 TCTCCCCAAATCCACCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
906 2198 0.704076 CTCCCCAAATCCACCTCCAA 59.296 55.000 0.00 0.00 0.00 3.53
967 2260 2.493973 CTGCTGAGACCGAGGAGC 59.506 66.667 0.00 0.00 0.00 4.70
969 2262 3.444805 GCTGAGACCGAGGAGCGT 61.445 66.667 0.00 0.00 38.67 5.07
1133 2426 1.685820 CCACCCCCTCTGAGTTTCC 59.314 63.158 3.66 0.00 0.00 3.13
1142 2435 3.307762 CCCTCTGAGTTTCCAACCCTAAG 60.308 52.174 3.66 0.00 0.00 2.18
1154 2447 1.770518 CCCTAAGCCCTCCCCGAAT 60.771 63.158 0.00 0.00 0.00 3.34
1156 2449 0.179018 CCTAAGCCCTCCCCGAATTG 60.179 60.000 0.00 0.00 0.00 2.32
1237 2530 4.386867 TCGAGTTCATCTCCCATGTAAC 57.613 45.455 0.00 0.00 39.84 2.50
1239 2532 3.118775 CGAGTTCATCTCCCATGTAACCA 60.119 47.826 0.00 0.00 39.84 3.67
1240 2533 4.446371 GAGTTCATCTCCCATGTAACCAG 58.554 47.826 0.00 0.00 37.22 4.00
1242 2535 4.080863 AGTTCATCTCCCATGTAACCAGAC 60.081 45.833 0.00 0.00 0.00 3.51
1248 2541 2.838202 TCCCATGTAACCAGACCTTCTC 59.162 50.000 0.00 0.00 0.00 2.87
1249 2542 2.840651 CCCATGTAACCAGACCTTCTCT 59.159 50.000 0.00 0.00 0.00 3.10
1250 2543 3.264450 CCCATGTAACCAGACCTTCTCTT 59.736 47.826 0.00 0.00 0.00 2.85
1251 2544 4.508662 CCATGTAACCAGACCTTCTCTTC 58.491 47.826 0.00 0.00 0.00 2.87
1252 2545 3.936372 TGTAACCAGACCTTCTCTTCG 57.064 47.619 0.00 0.00 0.00 3.79
1253 2546 2.029290 TGTAACCAGACCTTCTCTTCGC 60.029 50.000 0.00 0.00 0.00 4.70
1254 2547 0.321996 AACCAGACCTTCTCTTCGCC 59.678 55.000 0.00 0.00 0.00 5.54
1255 2548 1.219393 CCAGACCTTCTCTTCGCCC 59.781 63.158 0.00 0.00 0.00 6.13
1256 2549 1.544825 CCAGACCTTCTCTTCGCCCA 61.545 60.000 0.00 0.00 0.00 5.36
1257 2550 0.390472 CAGACCTTCTCTTCGCCCAC 60.390 60.000 0.00 0.00 0.00 4.61
1258 2551 1.079057 GACCTTCTCTTCGCCCACC 60.079 63.158 0.00 0.00 0.00 4.61
1259 2552 1.536662 ACCTTCTCTTCGCCCACCT 60.537 57.895 0.00 0.00 0.00 4.00
1260 2553 0.252103 ACCTTCTCTTCGCCCACCTA 60.252 55.000 0.00 0.00 0.00 3.08
1261 2554 1.123928 CCTTCTCTTCGCCCACCTAT 58.876 55.000 0.00 0.00 0.00 2.57
1262 2555 1.486726 CCTTCTCTTCGCCCACCTATT 59.513 52.381 0.00 0.00 0.00 1.73
1263 2556 2.092914 CCTTCTCTTCGCCCACCTATTT 60.093 50.000 0.00 0.00 0.00 1.40
1264 2557 3.134081 CCTTCTCTTCGCCCACCTATTTA 59.866 47.826 0.00 0.00 0.00 1.40
1265 2558 4.372656 CTTCTCTTCGCCCACCTATTTAG 58.627 47.826 0.00 0.00 0.00 1.85
1266 2559 3.371965 TCTCTTCGCCCACCTATTTAGT 58.628 45.455 0.00 0.00 0.00 2.24
1267 2560 3.773119 TCTCTTCGCCCACCTATTTAGTT 59.227 43.478 0.00 0.00 0.00 2.24
1268 2561 4.224370 TCTCTTCGCCCACCTATTTAGTTT 59.776 41.667 0.00 0.00 0.00 2.66
1269 2562 4.913784 TCTTCGCCCACCTATTTAGTTTT 58.086 39.130 0.00 0.00 0.00 2.43
1270 2563 6.052405 TCTTCGCCCACCTATTTAGTTTTA 57.948 37.500 0.00 0.00 0.00 1.52
1271 2564 5.876460 TCTTCGCCCACCTATTTAGTTTTAC 59.124 40.000 0.00 0.00 0.00 2.01
1272 2565 5.425196 TCGCCCACCTATTTAGTTTTACT 57.575 39.130 0.00 0.00 0.00 2.24
1273 2566 5.807909 TCGCCCACCTATTTAGTTTTACTT 58.192 37.500 0.00 0.00 0.00 2.24
1274 2567 5.644636 TCGCCCACCTATTTAGTTTTACTTG 59.355 40.000 0.00 0.00 0.00 3.16
1275 2568 5.413523 CGCCCACCTATTTAGTTTTACTTGT 59.586 40.000 0.00 0.00 0.00 3.16
1276 2569 6.072342 CGCCCACCTATTTAGTTTTACTTGTT 60.072 38.462 0.00 0.00 0.00 2.83
1277 2570 7.119553 CGCCCACCTATTTAGTTTTACTTGTTA 59.880 37.037 0.00 0.00 0.00 2.41
1278 2571 8.795513 GCCCACCTATTTAGTTTTACTTGTTAA 58.204 33.333 0.00 0.00 0.00 2.01
1312 2605 2.699846 TGGCTTCCAGTTTCAATTGCTT 59.300 40.909 0.00 0.00 0.00 3.91
1328 2621 1.776034 GCTTAGGGCGTATGTGCAGC 61.776 60.000 0.00 0.00 36.28 5.25
1335 2628 1.704010 CGTATGTGCAGCAGTCGTG 59.296 57.895 0.00 0.00 0.00 4.35
1346 2639 0.593128 GCAGTCGTGGATTTTGCTGT 59.407 50.000 0.00 0.00 0.00 4.40
1363 2656 5.389859 TGCTGTTCCACTCAAAATAATGG 57.610 39.130 0.00 0.00 0.00 3.16
1373 2666 7.390440 TCCACTCAAAATAATGGAACTACACAG 59.610 37.037 0.00 0.00 38.30 3.66
1374 2667 7.023575 CACTCAAAATAATGGAACTACACAGC 58.976 38.462 0.00 0.00 0.00 4.40
1402 2695 5.827797 TCACAACTCTGAATGTTTTAGCCTT 59.172 36.000 0.00 0.00 0.00 4.35
1405 2698 7.965107 CACAACTCTGAATGTTTTAGCCTTATC 59.035 37.037 0.00 0.00 0.00 1.75
1410 2703 9.823647 CTCTGAATGTTTTAGCCTTATCTTCTA 57.176 33.333 0.00 0.00 0.00 2.10
1411 2704 9.823647 TCTGAATGTTTTAGCCTTATCTTCTAG 57.176 33.333 0.00 0.00 0.00 2.43
1633 2931 7.967890 TTAATACTATCTGCATCACACCATG 57.032 36.000 0.00 0.00 0.00 3.66
1668 2966 2.799412 CTCAAGCATAAGATCCGTCTGC 59.201 50.000 0.00 0.00 34.13 4.26
1723 3027 7.816995 GTCTAGAACCCTGCTTCTGAATATATG 59.183 40.741 0.00 0.00 32.54 1.78
1730 3034 7.147479 ACCCTGCTTCTGAATATATGTGTAGTT 60.147 37.037 0.00 0.00 0.00 2.24
1773 3078 8.621532 TCTTGAACTGCATAGTGTCTTTTAAT 57.378 30.769 0.00 0.00 37.19 1.40
1797 3102 8.619146 ATGATTTAACGCTTGTACATTGAATG 57.381 30.769 3.16 3.16 0.00 2.67
1798 3103 7.589395 TGATTTAACGCTTGTACATTGAATGT 58.411 30.769 15.80 15.80 46.92 2.71
1799 3104 8.722394 TGATTTAACGCTTGTACATTGAATGTA 58.278 29.630 13.63 13.63 44.38 2.29
1801 3106 8.942669 TTTAACGCTTGTACATTGAATGTAAG 57.057 30.769 18.63 15.90 46.36 2.34
1802 3107 4.969816 ACGCTTGTACATTGAATGTAAGC 58.030 39.130 25.12 25.12 46.36 3.09
1805 3110 4.795278 GCTTGTACATTGAATGTAAGCAGC 59.205 41.667 27.89 23.87 46.49 5.25
1806 3111 5.392380 GCTTGTACATTGAATGTAAGCAGCT 60.392 40.000 27.89 4.05 46.49 4.24
1809 3114 7.680442 TGTACATTGAATGTAAGCAGCTTTA 57.320 32.000 18.63 3.46 46.36 1.85
1821 3135 4.494350 AGCAGCTTTATTGGCAATATCG 57.506 40.909 19.88 14.38 0.00 2.92
1876 3190 2.645838 AGGTTCATGCAGTGAAGTGT 57.354 45.000 10.57 0.00 46.99 3.55
1979 3294 6.859017 CACAGGTGTGTAAGGTTTTTAAGTT 58.141 36.000 1.70 0.00 40.96 2.66
2053 3375 4.992319 CCTCGGTTCAGTAAACACATGTTA 59.008 41.667 0.00 0.00 39.81 2.41
2105 3427 8.347035 GCTCTAACTCTAACCACTAACATAGAG 58.653 40.741 7.03 7.03 44.39 2.43
2152 3486 9.660180 TGTGTAGTATGCATAATTTGTTAGTCA 57.340 29.630 12.49 0.00 29.67 3.41
2196 3530 8.554528 CATTCGATTTGTATGGAGATATATGCC 58.445 37.037 0.00 0.00 0.00 4.40
2269 3603 4.917415 GCTTGTATGCAAACTTACCAAGTG 59.083 41.667 0.00 0.00 41.91 3.16
2283 3617 2.099405 CCAAGTGGTGGTCAAAGTTGT 58.901 47.619 0.00 0.00 43.20 3.32
2312 3646 1.141053 GATCCTGGCGGTGTCCTAAAT 59.859 52.381 0.00 0.00 0.00 1.40
2339 3673 7.360691 GGCATATATTCACAGAGCAGTATTGTG 60.361 40.741 0.00 0.00 42.65 3.33
2569 3999 6.606395 AGTTGTACTCTGGGTAGTAGTAATGG 59.394 42.308 0.00 0.00 32.69 3.16
2605 4050 6.036470 GGCTTTTAAGACAATAGTGATTGCC 58.964 40.000 0.00 0.00 45.52 4.52
2799 4266 4.521130 TGTTGTAACTGTTTGCAAACCA 57.479 36.364 33.33 22.63 38.81 3.67
3409 4880 7.602265 GGTACGTACATAAGGGAAGTGTTTTTA 59.398 37.037 26.02 0.00 0.00 1.52
3441 4912 1.614241 ATCCCTGTGGACAGTACCGC 61.614 60.000 6.06 0.00 45.58 5.68
3670 5144 0.921256 CCCTTCCTCTGGGGTTCCAT 60.921 60.000 0.00 0.00 43.11 3.41
3823 5314 1.515020 GCGCCTCTCACTCTCATGT 59.485 57.895 0.00 0.00 0.00 3.21
3852 5343 5.004448 TCTCGAAGATGTGAGTTCTACACT 58.996 41.667 0.00 0.00 38.81 3.55
3862 5353 3.243535 TGAGTTCTACACTGTGTGAGCTG 60.244 47.826 22.97 8.19 35.01 4.24
3864 5355 1.704641 TCTACACTGTGTGAGCTGGT 58.295 50.000 22.97 0.00 36.96 4.00
3865 5356 2.039418 TCTACACTGTGTGAGCTGGTT 58.961 47.619 22.97 0.00 36.96 3.67
3866 5357 2.035961 TCTACACTGTGTGAGCTGGTTC 59.964 50.000 22.97 0.00 36.96 3.62
3867 5358 0.179045 ACACTGTGTGAGCTGGTTCC 60.179 55.000 13.50 0.00 36.96 3.62
3868 5359 0.107456 CACTGTGTGAGCTGGTTCCT 59.893 55.000 0.00 0.00 35.23 3.36
3869 5360 0.107456 ACTGTGTGAGCTGGTTCCTG 59.893 55.000 0.00 0.00 0.00 3.86
3870 5361 1.227943 TGTGTGAGCTGGTTCCTGC 60.228 57.895 11.81 11.81 0.00 4.85
3871 5362 1.968540 GTGTGAGCTGGTTCCTGCC 60.969 63.158 15.23 8.89 0.00 4.85
3872 5363 2.360475 GTGAGCTGGTTCCTGCCC 60.360 66.667 15.23 6.24 0.00 5.36
3873 5364 2.853542 TGAGCTGGTTCCTGCCCA 60.854 61.111 15.23 8.64 0.00 5.36
3874 5365 2.360475 GAGCTGGTTCCTGCCCAC 60.360 66.667 15.23 5.96 0.00 4.61
3877 5368 2.669569 CTGGTTCCTGCCCACGTG 60.670 66.667 9.08 9.08 0.00 4.49
3905 5398 4.819761 GCGCGAGACTCCATGCCA 62.820 66.667 12.10 0.00 0.00 4.92
3916 5409 1.748122 CCATGCCAGCACCTCAGAC 60.748 63.158 0.00 0.00 0.00 3.51
3933 5426 0.253044 GACCTCCACCATGCAAGCTA 59.747 55.000 0.00 0.00 0.00 3.32
4026 5519 1.279271 CGTTCCCCTTCTGTGATCCTT 59.721 52.381 0.00 0.00 0.00 3.36
4029 5522 4.262617 GTTCCCCTTCTGTGATCCTTAAC 58.737 47.826 0.00 0.00 0.00 2.01
4047 5540 0.036105 ACCGCATGAGTCATGAGCAA 60.036 50.000 32.61 0.00 43.81 3.91
4118 5943 2.093447 AGGACTGATTCTTTAGCGTGGG 60.093 50.000 0.00 0.00 0.00 4.61
4124 5949 0.250989 TTCTTTAGCGTGGGTTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
4125 5950 1.677633 CTTTAGCGTGGGTTGGGGG 60.678 63.158 0.00 0.00 0.00 5.40
4245 6070 4.641989 GGATTGCTTCAATTTCTGGCTCTA 59.358 41.667 0.00 0.00 33.90 2.43
4297 6131 4.954933 GGCCTTGCCTTATCGTCA 57.045 55.556 0.00 0.00 46.69 4.35
4358 6222 1.507141 CTCACCGGTTGTGCAAGGTC 61.507 60.000 2.97 0.00 45.03 3.85
4361 6225 4.025401 CGGTTGTGCAAGGTCGCC 62.025 66.667 0.00 0.00 0.00 5.54
4535 6488 0.957395 AACCTGAAGCCACATCAGCG 60.957 55.000 0.00 0.00 42.36 5.18
4542 6495 1.592669 GCCACATCAGCGCGTATCT 60.593 57.895 8.43 0.00 0.00 1.98
4639 6592 6.399626 GCGTTATCCGTGCAAAATTTTATTC 58.600 36.000 2.44 0.00 39.32 1.75
4693 6646 8.246871 AGACTTTCTTCTTTTGTTTCTTCCTTG 58.753 33.333 0.00 0.00 0.00 3.61
4826 6779 7.045416 TCCTTATATTCGCTAAAAGTGCTGAA 58.955 34.615 0.00 0.00 0.00 3.02
4948 6902 2.103941 TCATGTGTGTCTGCACTTACCA 59.896 45.455 0.00 0.00 45.44 3.25
5088 7042 5.364446 TGTATTTCCTGAAGGCGAGGTAATA 59.636 40.000 7.67 7.67 33.83 0.98
5437 7581 4.381505 GGCAGAGAGTTCAGACTTCCTAAG 60.382 50.000 0.00 0.00 35.88 2.18
5438 7582 4.461081 GCAGAGAGTTCAGACTTCCTAAGA 59.539 45.833 0.00 0.00 35.88 2.10
5460 7604 4.634199 AGCAAACCAAATCCATTCACTTG 58.366 39.130 0.00 0.00 0.00 3.16
5523 7667 0.629058 AAAATCTATGCCCACCGGGT 59.371 50.000 6.32 0.00 46.51 5.28
5577 7729 6.465439 AAATAAAAGCTATAACCACCAGGC 57.535 37.500 0.00 0.00 39.06 4.85
6056 8257 2.029918 GGCCACTGTGAAAGATTTGGAC 60.030 50.000 9.86 0.00 0.00 4.02
6057 8258 2.622942 GCCACTGTGAAAGATTTGGACA 59.377 45.455 9.86 0.00 0.00 4.02
6091 8292 1.072266 TGTGTACAATGAAGGGGCCT 58.928 50.000 0.84 0.00 0.00 5.19
6185 8386 4.388499 CCGGTTGCCGCTACACCT 62.388 66.667 7.27 0.00 46.86 4.00
6353 8563 9.604626 CATAGCTCTTGTTTTCTTGTTTAAGAG 57.395 33.333 0.00 0.00 43.41 2.85
6409 8619 4.940046 AGAATCTTAATCATGCCGCCTATG 59.060 41.667 0.00 0.00 0.00 2.23
6614 8840 2.686405 GTGCTCATTGCCATCATCAGAA 59.314 45.455 0.00 0.00 42.00 3.02
6642 8868 1.159285 CAGTGCTGAAGCCGATTTGA 58.841 50.000 0.00 0.00 41.18 2.69
6706 8932 1.203087 TCCTGTCGGGTGAGTTCCTAA 60.203 52.381 0.00 0.00 36.25 2.69
6776 9002 9.302345 CAAACATTTACGAGATCTGTATGTAGT 57.698 33.333 0.00 0.00 0.00 2.73
6782 9008 6.111669 ACGAGATCTGTATGTAGTAGGCTA 57.888 41.667 0.00 0.00 0.00 3.93
6869 9102 1.147153 GGAGGGACTATGGCTGCAC 59.853 63.158 0.50 0.00 41.55 4.57
6887 9120 3.165058 CACTGTGTGCGATATACTGGT 57.835 47.619 0.00 0.00 0.00 4.00
6920 9153 2.847327 ACGAATGCCCATATCCTGAG 57.153 50.000 0.00 0.00 0.00 3.35
6941 9174 1.203162 TGGGCATCCCTTGACAATGTT 60.203 47.619 3.27 0.00 45.70 2.71
7027 9260 2.203029 GGTAGCCCGCCAACTAGC 60.203 66.667 0.00 0.00 0.00 3.42
7327 9644 1.205179 TGCAAATGGTGTGATCATGGC 59.795 47.619 0.00 0.00 0.00 4.40
7335 9652 2.357009 GGTGTGATCATGGCACTTCATC 59.643 50.000 16.78 2.22 37.18 2.92
7397 9808 1.821136 GCTGGAGGTGAATTGGAAAGG 59.179 52.381 0.00 0.00 0.00 3.11
7461 10938 2.732412 AGATCGGATGGCTTATGTCG 57.268 50.000 0.00 0.00 0.00 4.35
7700 11177 0.745845 GACGCTGCATGTCTCCCATT 60.746 55.000 10.98 0.00 33.54 3.16
7717 11194 0.107945 ATTTCCGTGCCAGAGAGCTC 60.108 55.000 5.27 5.27 0.00 4.09
7721 11198 2.125188 GTGCCAGAGAGCTCCAGC 60.125 66.667 10.93 8.97 42.49 4.85
7723 11200 2.187424 GCCAGAGAGCTCCAGCAG 59.813 66.667 10.93 0.00 45.16 4.24
7735 11212 4.680237 CAGCAGCACGACGGGGAA 62.680 66.667 0.00 0.00 0.00 3.97
7736 11213 4.681978 AGCAGCACGACGGGGAAC 62.682 66.667 0.00 0.00 0.00 3.62
7737 11214 4.980805 GCAGCACGACGGGGAACA 62.981 66.667 0.00 0.00 0.00 3.18
7738 11215 3.041940 CAGCACGACGGGGAACAC 61.042 66.667 0.00 0.00 0.00 3.32
7739 11216 3.542676 AGCACGACGGGGAACACA 61.543 61.111 0.00 0.00 0.00 3.72
7740 11217 3.343421 GCACGACGGGGAACACAC 61.343 66.667 0.00 0.00 0.00 3.82
7750 11227 0.034337 GGGAACACACCGAAGCTGTA 59.966 55.000 0.00 0.00 0.00 2.74
7751 11228 1.338769 GGGAACACACCGAAGCTGTAT 60.339 52.381 0.00 0.00 0.00 2.29
7752 11229 1.732259 GGAACACACCGAAGCTGTATG 59.268 52.381 0.00 0.00 0.00 2.39
7753 11230 2.413837 GAACACACCGAAGCTGTATGT 58.586 47.619 0.00 0.00 0.00 2.29
7754 11231 1.795768 ACACACCGAAGCTGTATGTG 58.204 50.000 15.39 15.39 44.92 3.21
7755 11232 1.070134 ACACACCGAAGCTGTATGTGT 59.930 47.619 16.40 16.40 46.81 3.72
7756 11233 1.795768 ACACCGAAGCTGTATGTGTG 58.204 50.000 9.85 4.69 38.63 3.82
7757 11234 1.070134 ACACCGAAGCTGTATGTGTGT 59.930 47.619 9.85 5.22 38.63 3.72
7758 11235 2.143122 CACCGAAGCTGTATGTGTGTT 58.857 47.619 0.00 0.00 0.00 3.32
7759 11236 2.096268 CACCGAAGCTGTATGTGTGTTG 60.096 50.000 0.00 0.00 0.00 3.33
7760 11237 1.464608 CCGAAGCTGTATGTGTGTTGG 59.535 52.381 0.00 0.00 0.00 3.77
7761 11238 1.464608 CGAAGCTGTATGTGTGTTGGG 59.535 52.381 0.00 0.00 0.00 4.12
7763 11240 0.038166 AGCTGTATGTGTGTTGGGGG 59.962 55.000 0.00 0.00 0.00 5.40
7781 14683 2.110578 GGGGAGGCAGTAAAATTGCAT 58.889 47.619 0.00 0.00 43.28 3.96
7818 14720 6.361433 TCATGACTTCCTAAAGTTTGGTTCA 58.639 36.000 0.00 4.11 45.80 3.18
7819 14721 7.004086 TCATGACTTCCTAAAGTTTGGTTCAT 58.996 34.615 0.00 5.85 45.80 2.57
7848 14751 3.879295 TGAAGCTCCAGAAGTTGAGTTTG 59.121 43.478 0.00 0.00 33.03 2.93
7903 14806 4.780021 AGGTGATGTTGTCTATGACTCCTT 59.220 41.667 0.00 0.00 33.15 3.36
7908 14811 6.210584 TGATGTTGTCTATGACTCCTTGTACA 59.789 38.462 0.00 0.00 33.15 2.90
7937 14840 7.065085 GCTCACAGCACGGATATATATGATTTT 59.935 37.037 0.00 0.00 41.89 1.82
7968 14871 4.695928 AGAGTTCGAAGGATTTAAGGTTGC 59.304 41.667 0.00 0.00 0.00 4.17
7969 14872 4.652822 AGTTCGAAGGATTTAAGGTTGCT 58.347 39.130 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.069823 ACTGCTATGAGATGCGGGAAG 59.930 52.381 0.00 0.00 39.67 3.46
8 9 1.123077 ACTGCTATGAGATGCGGGAA 58.877 50.000 0.00 0.00 39.67 3.97
9 10 1.069204 GAACTGCTATGAGATGCGGGA 59.931 52.381 0.00 0.00 39.67 5.14
10 11 1.069823 AGAACTGCTATGAGATGCGGG 59.930 52.381 0.00 0.00 39.67 6.13
11 12 2.522836 AGAACTGCTATGAGATGCGG 57.477 50.000 0.00 0.00 41.02 5.69
12 13 4.143158 GCATAAGAACTGCTATGAGATGCG 60.143 45.833 0.00 0.00 36.68 4.73
13 14 4.753610 TGCATAAGAACTGCTATGAGATGC 59.246 41.667 0.00 0.00 40.34 3.91
14 15 5.178996 GGTGCATAAGAACTGCTATGAGATG 59.821 44.000 0.00 0.00 40.34 2.90
15 16 5.303971 GGTGCATAAGAACTGCTATGAGAT 58.696 41.667 0.00 0.00 40.34 2.75
16 17 4.443457 GGGTGCATAAGAACTGCTATGAGA 60.443 45.833 0.00 0.00 40.34 3.27
17 18 3.812053 GGGTGCATAAGAACTGCTATGAG 59.188 47.826 0.00 0.00 40.34 2.90
18 19 3.455910 AGGGTGCATAAGAACTGCTATGA 59.544 43.478 0.00 0.00 40.34 2.15
19 20 3.812053 GAGGGTGCATAAGAACTGCTATG 59.188 47.826 0.00 0.00 40.34 2.23
20 21 3.493350 CGAGGGTGCATAAGAACTGCTAT 60.493 47.826 0.00 0.00 40.34 2.97
21 22 2.159099 CGAGGGTGCATAAGAACTGCTA 60.159 50.000 0.00 0.00 40.34 3.49
22 23 1.406069 CGAGGGTGCATAAGAACTGCT 60.406 52.381 0.00 0.00 40.34 4.24
23 24 1.009829 CGAGGGTGCATAAGAACTGC 58.990 55.000 0.00 0.00 40.10 4.40
24 25 2.672961 TCGAGGGTGCATAAGAACTG 57.327 50.000 0.00 0.00 0.00 3.16
25 26 2.301870 TGTTCGAGGGTGCATAAGAACT 59.698 45.455 17.63 1.42 38.83 3.01
26 27 2.695359 TGTTCGAGGGTGCATAAGAAC 58.305 47.619 13.04 13.04 38.60 3.01
27 28 3.410631 TTGTTCGAGGGTGCATAAGAA 57.589 42.857 0.00 0.00 0.00 2.52
28 29 3.627395 ATTGTTCGAGGGTGCATAAGA 57.373 42.857 0.00 0.00 0.00 2.10
29 30 5.527214 TGATAATTGTTCGAGGGTGCATAAG 59.473 40.000 0.00 0.00 0.00 1.73
30 31 5.295787 GTGATAATTGTTCGAGGGTGCATAA 59.704 40.000 0.00 0.00 0.00 1.90
31 32 4.814234 GTGATAATTGTTCGAGGGTGCATA 59.186 41.667 0.00 0.00 0.00 3.14
32 33 3.627577 GTGATAATTGTTCGAGGGTGCAT 59.372 43.478 0.00 0.00 0.00 3.96
33 34 3.006940 GTGATAATTGTTCGAGGGTGCA 58.993 45.455 0.00 0.00 0.00 4.57
34 35 2.030457 CGTGATAATTGTTCGAGGGTGC 59.970 50.000 0.00 0.00 0.00 5.01
35 36 2.607635 CCGTGATAATTGTTCGAGGGTG 59.392 50.000 0.00 0.00 0.00 4.61
36 37 2.235402 ACCGTGATAATTGTTCGAGGGT 59.765 45.455 0.00 0.00 0.00 4.34
37 38 2.864343 GACCGTGATAATTGTTCGAGGG 59.136 50.000 0.00 0.00 0.00 4.30
38 39 3.782046 AGACCGTGATAATTGTTCGAGG 58.218 45.455 0.00 0.00 0.00 4.63
39 40 4.027621 CGAAGACCGTGATAATTGTTCGAG 60.028 45.833 0.00 0.00 38.19 4.04
40 41 3.855379 CGAAGACCGTGATAATTGTTCGA 59.145 43.478 0.00 0.00 38.19 3.71
41 42 4.164802 CGAAGACCGTGATAATTGTTCG 57.835 45.455 0.00 0.00 0.00 3.95
54 55 1.153369 ATCCATGGCACGAAGACCG 60.153 57.895 6.96 0.00 45.44 4.79
55 56 1.154205 CGATCCATGGCACGAAGACC 61.154 60.000 20.24 0.00 0.00 3.85
56 57 1.154205 CCGATCCATGGCACGAAGAC 61.154 60.000 24.42 3.97 0.00 3.01
57 58 1.143838 CCGATCCATGGCACGAAGA 59.856 57.895 24.42 1.06 0.00 2.87
58 59 0.250038 ATCCGATCCATGGCACGAAG 60.250 55.000 24.42 13.22 0.00 3.79
59 60 0.249868 GATCCGATCCATGGCACGAA 60.250 55.000 24.42 10.95 0.00 3.85
60 61 1.115326 AGATCCGATCCATGGCACGA 61.115 55.000 24.42 11.24 0.00 4.35
61 62 0.250038 AAGATCCGATCCATGGCACG 60.250 55.000 18.70 18.70 0.00 5.34
62 63 1.972872 AAAGATCCGATCCATGGCAC 58.027 50.000 6.96 2.18 0.00 5.01
63 64 3.855255 TTAAAGATCCGATCCATGGCA 57.145 42.857 6.96 0.00 0.00 4.92
64 65 3.882888 TGTTTAAAGATCCGATCCATGGC 59.117 43.478 6.96 0.00 0.00 4.40
65 66 4.275936 GGTGTTTAAAGATCCGATCCATGG 59.724 45.833 4.97 4.97 0.00 3.66
66 67 4.024893 CGGTGTTTAAAGATCCGATCCATG 60.025 45.833 16.13 0.00 43.22 3.66
67 68 4.127171 CGGTGTTTAAAGATCCGATCCAT 58.873 43.478 16.13 0.00 43.22 3.41
68 69 3.196039 TCGGTGTTTAAAGATCCGATCCA 59.804 43.478 18.35 4.30 44.04 3.41
69 70 3.788937 TCGGTGTTTAAAGATCCGATCC 58.211 45.455 18.35 2.41 44.04 3.36
73 74 2.675844 TGCATCGGTGTTTAAAGATCCG 59.324 45.455 15.43 15.43 42.12 4.18
74 75 4.900635 ATGCATCGGTGTTTAAAGATCC 57.099 40.909 0.00 0.00 0.00 3.36
75 76 6.604735 ACTATGCATCGGTGTTTAAAGATC 57.395 37.500 0.19 0.00 0.00 2.75
76 77 6.202954 GCTACTATGCATCGGTGTTTAAAGAT 59.797 38.462 0.19 0.00 0.00 2.40
77 78 5.522460 GCTACTATGCATCGGTGTTTAAAGA 59.478 40.000 0.19 0.00 0.00 2.52
78 79 5.293324 TGCTACTATGCATCGGTGTTTAAAG 59.707 40.000 0.19 0.00 38.12 1.85
79 80 5.179533 TGCTACTATGCATCGGTGTTTAAA 58.820 37.500 0.19 0.00 38.12 1.52
80 81 4.760878 TGCTACTATGCATCGGTGTTTAA 58.239 39.130 0.19 0.00 38.12 1.52
81 82 4.394439 TGCTACTATGCATCGGTGTTTA 57.606 40.909 0.19 0.00 38.12 2.01
82 83 3.260475 TGCTACTATGCATCGGTGTTT 57.740 42.857 0.19 0.00 38.12 2.83
83 84 2.979814 TGCTACTATGCATCGGTGTT 57.020 45.000 0.19 0.00 38.12 3.32
84 85 2.979814 TTGCTACTATGCATCGGTGT 57.020 45.000 0.19 0.99 42.96 4.16
85 86 2.481568 CCATTGCTACTATGCATCGGTG 59.518 50.000 0.19 0.00 42.96 4.94
86 87 2.368548 TCCATTGCTACTATGCATCGGT 59.631 45.455 0.19 6.46 42.96 4.69
87 88 2.738846 GTCCATTGCTACTATGCATCGG 59.261 50.000 0.19 0.00 42.96 4.18
88 89 3.392882 TGTCCATTGCTACTATGCATCG 58.607 45.455 0.19 0.00 42.96 3.84
89 90 4.635223 TCTGTCCATTGCTACTATGCATC 58.365 43.478 0.19 0.00 42.96 3.91
90 91 4.694760 TCTGTCCATTGCTACTATGCAT 57.305 40.909 3.79 3.79 42.96 3.96
91 92 4.486125 TTCTGTCCATTGCTACTATGCA 57.514 40.909 0.00 0.00 41.65 3.96
92 93 4.878397 AGTTTCTGTCCATTGCTACTATGC 59.122 41.667 0.00 0.00 0.00 3.14
93 94 6.992063 AAGTTTCTGTCCATTGCTACTATG 57.008 37.500 0.00 0.00 0.00 2.23
94 95 6.127897 GCAAAGTTTCTGTCCATTGCTACTAT 60.128 38.462 0.00 0.00 39.87 2.12
95 96 5.181245 GCAAAGTTTCTGTCCATTGCTACTA 59.819 40.000 0.00 0.00 39.87 1.82
96 97 4.022849 GCAAAGTTTCTGTCCATTGCTACT 60.023 41.667 0.00 0.00 39.87 2.57
97 98 4.229876 GCAAAGTTTCTGTCCATTGCTAC 58.770 43.478 0.00 0.00 39.87 3.58
98 99 3.255642 GGCAAAGTTTCTGTCCATTGCTA 59.744 43.478 8.03 0.00 41.99 3.49
99 100 2.036346 GGCAAAGTTTCTGTCCATTGCT 59.964 45.455 8.03 0.00 41.99 3.91
100 101 2.224018 TGGCAAAGTTTCTGTCCATTGC 60.224 45.455 0.00 0.00 41.69 3.56
101 102 3.731652 TGGCAAAGTTTCTGTCCATTG 57.268 42.857 0.00 0.00 0.00 2.82
102 103 4.101430 ACAATGGCAAAGTTTCTGTCCATT 59.899 37.500 11.94 11.94 39.31 3.16
103 104 3.642848 ACAATGGCAAAGTTTCTGTCCAT 59.357 39.130 0.00 0.00 34.33 3.41
104 105 3.030291 ACAATGGCAAAGTTTCTGTCCA 58.970 40.909 0.00 0.00 0.00 4.02
105 106 3.642705 GACAATGGCAAAGTTTCTGTCC 58.357 45.455 0.00 0.00 0.00 4.02
106 107 3.300009 CGACAATGGCAAAGTTTCTGTC 58.700 45.455 0.00 0.00 0.00 3.51
107 108 2.034558 CCGACAATGGCAAAGTTTCTGT 59.965 45.455 0.00 0.00 0.00 3.41
108 109 2.293122 TCCGACAATGGCAAAGTTTCTG 59.707 45.455 0.00 0.00 0.00 3.02
109 110 2.293399 GTCCGACAATGGCAAAGTTTCT 59.707 45.455 0.00 0.00 0.00 2.52
110 111 2.293399 AGTCCGACAATGGCAAAGTTTC 59.707 45.455 0.40 0.00 0.00 2.78
111 112 2.306847 AGTCCGACAATGGCAAAGTTT 58.693 42.857 0.40 0.00 0.00 2.66
112 113 1.981256 AGTCCGACAATGGCAAAGTT 58.019 45.000 0.40 0.00 0.00 2.66
113 114 1.880027 GAAGTCCGACAATGGCAAAGT 59.120 47.619 0.40 0.00 0.00 2.66
114 115 2.154462 AGAAGTCCGACAATGGCAAAG 58.846 47.619 0.40 0.00 0.00 2.77
115 116 2.270352 AGAAGTCCGACAATGGCAAA 57.730 45.000 0.40 0.00 0.00 3.68
116 117 2.270352 AAGAAGTCCGACAATGGCAA 57.730 45.000 0.40 0.00 0.00 4.52
117 118 3.410631 TTAAGAAGTCCGACAATGGCA 57.589 42.857 0.40 0.00 0.00 4.92
118 119 3.424433 CGTTTAAGAAGTCCGACAATGGC 60.424 47.826 0.40 0.00 0.00 4.40
119 120 3.124636 CCGTTTAAGAAGTCCGACAATGG 59.875 47.826 0.40 0.00 0.00 3.16
120 121 3.424433 GCCGTTTAAGAAGTCCGACAATG 60.424 47.826 0.40 0.00 0.00 2.82
121 122 2.740447 GCCGTTTAAGAAGTCCGACAAT 59.260 45.455 0.40 0.00 0.00 2.71
122 123 2.137523 GCCGTTTAAGAAGTCCGACAA 58.862 47.619 0.40 0.00 0.00 3.18
123 124 1.787012 GCCGTTTAAGAAGTCCGACA 58.213 50.000 0.40 0.00 0.00 4.35
124 125 0.712222 CGCCGTTTAAGAAGTCCGAC 59.288 55.000 0.00 0.00 0.00 4.79
125 126 0.314935 ACGCCGTTTAAGAAGTCCGA 59.685 50.000 0.00 0.00 0.00 4.55
126 127 0.712222 GACGCCGTTTAAGAAGTCCG 59.288 55.000 0.00 0.00 0.00 4.79
127 128 1.787012 TGACGCCGTTTAAGAAGTCC 58.213 50.000 0.00 0.00 0.00 3.85
128 129 3.865224 TTTGACGCCGTTTAAGAAGTC 57.135 42.857 0.00 0.00 0.00 3.01
129 130 3.810941 TCATTTGACGCCGTTTAAGAAGT 59.189 39.130 0.00 0.00 0.00 3.01
130 131 4.398549 TCATTTGACGCCGTTTAAGAAG 57.601 40.909 0.00 0.00 0.00 2.85
131 132 5.640357 AGTATCATTTGACGCCGTTTAAGAA 59.360 36.000 0.00 0.00 0.00 2.52
132 133 5.172934 AGTATCATTTGACGCCGTTTAAGA 58.827 37.500 0.00 0.00 0.00 2.10
133 134 5.464965 AGTATCATTTGACGCCGTTTAAG 57.535 39.130 0.00 0.00 0.00 1.85
134 135 5.408909 TCAAGTATCATTTGACGCCGTTTAA 59.591 36.000 0.00 0.00 30.03 1.52
135 136 4.930405 TCAAGTATCATTTGACGCCGTTTA 59.070 37.500 0.00 0.00 30.03 2.01
136 137 3.749088 TCAAGTATCATTTGACGCCGTTT 59.251 39.130 0.00 0.00 30.03 3.60
137 138 3.331150 TCAAGTATCATTTGACGCCGTT 58.669 40.909 0.00 0.00 30.03 4.44
138 139 2.967362 TCAAGTATCATTTGACGCCGT 58.033 42.857 0.00 0.00 30.03 5.68
139 140 3.370978 AGTTCAAGTATCATTTGACGCCG 59.629 43.478 0.00 0.00 34.50 6.46
140 141 4.651994 CAGTTCAAGTATCATTTGACGCC 58.348 43.478 0.00 0.00 34.50 5.68
141 142 4.091424 GCAGTTCAAGTATCATTTGACGC 58.909 43.478 0.00 0.00 34.50 5.19
142 143 4.437390 GGGCAGTTCAAGTATCATTTGACG 60.437 45.833 0.00 0.00 34.50 4.35
143 144 4.437390 CGGGCAGTTCAAGTATCATTTGAC 60.437 45.833 0.00 0.00 34.50 3.18
144 145 3.689161 CGGGCAGTTCAAGTATCATTTGA 59.311 43.478 0.00 0.00 33.00 2.69
145 146 3.440173 ACGGGCAGTTCAAGTATCATTTG 59.560 43.478 0.00 0.00 0.00 2.32
146 147 3.686016 ACGGGCAGTTCAAGTATCATTT 58.314 40.909 0.00 0.00 0.00 2.32
147 148 3.350219 ACGGGCAGTTCAAGTATCATT 57.650 42.857 0.00 0.00 0.00 2.57
148 149 3.350219 AACGGGCAGTTCAAGTATCAT 57.650 42.857 0.00 0.00 39.16 2.45
149 150 2.851263 AACGGGCAGTTCAAGTATCA 57.149 45.000 0.00 0.00 39.16 2.15
150 151 3.500680 TCAAAACGGGCAGTTCAAGTATC 59.499 43.478 2.89 0.00 43.37 2.24
151 152 3.482436 TCAAAACGGGCAGTTCAAGTAT 58.518 40.909 2.89 0.00 43.37 2.12
152 153 2.920524 TCAAAACGGGCAGTTCAAGTA 58.079 42.857 2.89 0.00 43.37 2.24
153 154 1.757682 TCAAAACGGGCAGTTCAAGT 58.242 45.000 2.89 0.00 43.37 3.16
154 155 2.159310 TGTTCAAAACGGGCAGTTCAAG 60.159 45.455 2.89 0.00 43.37 3.02
155 156 1.819288 TGTTCAAAACGGGCAGTTCAA 59.181 42.857 2.89 0.00 43.37 2.69
156 157 1.464734 TGTTCAAAACGGGCAGTTCA 58.535 45.000 2.89 0.00 43.37 3.18
157 158 2.570442 TTGTTCAAAACGGGCAGTTC 57.430 45.000 2.89 0.00 43.37 3.01
158 159 3.320673 TTTTGTTCAAAACGGGCAGTT 57.679 38.095 6.61 0.00 46.76 3.16
159 160 3.320673 TTTTTGTTCAAAACGGGCAGT 57.679 38.095 9.76 0.00 28.74 4.40
160 161 3.620821 ACATTTTTGTTCAAAACGGGCAG 59.379 39.130 9.76 0.00 37.18 4.85
161 162 3.600388 ACATTTTTGTTCAAAACGGGCA 58.400 36.364 9.76 0.00 37.18 5.36
162 163 4.608073 AACATTTTTGTTCAAAACGGGC 57.392 36.364 9.76 0.00 37.18 6.13
163 164 6.304208 CACAAAACATTTTTGTTCAAAACGGG 59.696 34.615 13.11 5.94 40.30 5.28
164 165 7.072030 TCACAAAACATTTTTGTTCAAAACGG 58.928 30.769 13.11 7.93 40.30 4.44
165 166 8.006590 TCTCACAAAACATTTTTGTTCAAAACG 58.993 29.630 13.11 7.39 40.30 3.60
166 167 9.657121 TTCTCACAAAACATTTTTGTTCAAAAC 57.343 25.926 13.11 0.00 40.30 2.43
170 171 9.434420 AGAATTCTCACAAAACATTTTTGTTCA 57.566 25.926 13.11 4.22 40.30 3.18
171 172 9.906111 GAGAATTCTCACAAAACATTTTTGTTC 57.094 29.630 27.08 8.33 40.30 3.18
172 173 9.657419 AGAGAATTCTCACAAAACATTTTTGTT 57.343 25.926 31.79 7.08 45.21 2.83
173 174 9.090692 CAGAGAATTCTCACAAAACATTTTTGT 57.909 29.630 31.79 10.53 45.21 2.83
174 175 8.545420 CCAGAGAATTCTCACAAAACATTTTTG 58.455 33.333 31.79 18.08 45.21 2.44
175 176 7.712205 CCCAGAGAATTCTCACAAAACATTTTT 59.288 33.333 31.79 8.44 45.21 1.94
176 177 7.147672 ACCCAGAGAATTCTCACAAAACATTTT 60.148 33.333 31.79 8.62 45.21 1.82
177 178 6.324770 ACCCAGAGAATTCTCACAAAACATTT 59.675 34.615 31.79 9.10 45.21 2.32
178 179 5.835280 ACCCAGAGAATTCTCACAAAACATT 59.165 36.000 31.79 9.78 45.21 2.71
179 180 5.388654 ACCCAGAGAATTCTCACAAAACAT 58.611 37.500 31.79 10.46 45.21 2.71
180 181 4.792068 ACCCAGAGAATTCTCACAAAACA 58.208 39.130 31.79 0.00 45.21 2.83
181 182 5.278512 GGAACCCAGAGAATTCTCACAAAAC 60.279 44.000 31.79 19.48 45.21 2.43
182 183 4.827284 GGAACCCAGAGAATTCTCACAAAA 59.173 41.667 31.79 0.00 45.21 2.44
183 184 4.398319 GGAACCCAGAGAATTCTCACAAA 58.602 43.478 31.79 0.00 45.21 2.83
184 185 4.021102 GGAACCCAGAGAATTCTCACAA 57.979 45.455 31.79 0.00 45.21 3.33
185 186 3.703001 GGAACCCAGAGAATTCTCACA 57.297 47.619 31.79 0.00 45.21 3.58
201 202 2.973694 TGATAGTTAGCCGTGGGAAC 57.026 50.000 0.00 0.00 0.00 3.62
202 203 4.080807 TCAATTGATAGTTAGCCGTGGGAA 60.081 41.667 3.38 0.00 0.00 3.97
203 204 3.452990 TCAATTGATAGTTAGCCGTGGGA 59.547 43.478 3.38 0.00 0.00 4.37
204 205 3.804036 TCAATTGATAGTTAGCCGTGGG 58.196 45.455 3.38 0.00 0.00 4.61
205 206 5.760253 AGATTCAATTGATAGTTAGCCGTGG 59.240 40.000 9.40 0.00 0.00 4.94
206 207 6.258727 ACAGATTCAATTGATAGTTAGCCGTG 59.741 38.462 9.40 0.00 0.00 4.94
207 208 6.349300 ACAGATTCAATTGATAGTTAGCCGT 58.651 36.000 9.40 0.00 0.00 5.68
208 209 6.851222 ACAGATTCAATTGATAGTTAGCCG 57.149 37.500 9.40 0.00 0.00 5.52
217 218 9.545105 TGCTTTTGTTAAACAGATTCAATTGAT 57.455 25.926 9.40 0.00 0.00 2.57
218 219 8.939201 TGCTTTTGTTAAACAGATTCAATTGA 57.061 26.923 3.38 3.38 0.00 2.57
219 220 9.985318 TTTGCTTTTGTTAAACAGATTCAATTG 57.015 25.926 0.00 0.00 0.00 2.32
220 221 9.986833 GTTTGCTTTTGTTAAACAGATTCAATT 57.013 25.926 0.00 0.00 35.11 2.32
221 222 9.382275 AGTTTGCTTTTGTTAAACAGATTCAAT 57.618 25.926 0.00 0.00 36.91 2.57
222 223 8.770438 AGTTTGCTTTTGTTAAACAGATTCAA 57.230 26.923 0.00 0.00 36.91 2.69
223 224 9.862371 TTAGTTTGCTTTTGTTAAACAGATTCA 57.138 25.926 0.00 0.00 36.91 2.57
227 228 9.915629 TTTCTTAGTTTGCTTTTGTTAAACAGA 57.084 25.926 0.00 0.00 36.91 3.41
238 239 9.435688 ACTGAAAATGTTTTCTTAGTTTGCTTT 57.564 25.926 16.53 0.00 45.14 3.51
239 240 8.872845 CACTGAAAATGTTTTCTTAGTTTGCTT 58.127 29.630 16.53 0.00 45.14 3.91
240 241 8.034804 ACACTGAAAATGTTTTCTTAGTTTGCT 58.965 29.630 16.53 0.00 45.14 3.91
241 242 8.185003 ACACTGAAAATGTTTTCTTAGTTTGC 57.815 30.769 16.53 0.00 45.14 3.68
243 244 9.797556 GGTACACTGAAAATGTTTTCTTAGTTT 57.202 29.630 16.53 9.74 45.14 2.66
244 245 9.185680 AGGTACACTGAAAATGTTTTCTTAGTT 57.814 29.630 16.53 8.21 45.14 2.24
245 246 8.747538 AGGTACACTGAAAATGTTTTCTTAGT 57.252 30.769 16.53 10.94 45.14 2.24
247 248 9.841295 AGTAGGTACACTGAAAATGTTTTCTTA 57.159 29.630 16.53 0.44 45.14 2.10
248 249 8.747538 AGTAGGTACACTGAAAATGTTTTCTT 57.252 30.769 16.53 4.18 45.14 2.52
249 250 8.747538 AAGTAGGTACACTGAAAATGTTTTCT 57.252 30.769 16.53 2.50 45.14 2.52
299 300 2.597510 AAAGCGAGGGGTGTTGGC 60.598 61.111 0.00 0.00 0.00 4.52
300 301 2.919494 GCAAAGCGAGGGGTGTTGG 61.919 63.158 0.00 0.00 0.00 3.77
416 417 3.326836 TTGTGAGCGTCATAATCCACA 57.673 42.857 0.00 0.00 33.38 4.17
450 451 1.688197 ACACGGAGTAAAAAGGACCGA 59.312 47.619 0.00 0.00 41.61 4.69
451 452 2.159327 ACACGGAGTAAAAAGGACCG 57.841 50.000 0.00 0.00 41.61 4.79
552 1617 9.179909 CATTATGGGACGAAGAGAGTAGTATAT 57.820 37.037 0.00 0.00 0.00 0.86
578 1643 8.971321 TCTAATGTAGTGTCAAAAACGTCTTAC 58.029 33.333 0.00 0.00 0.00 2.34
583 1648 7.208080 AGACTCTAATGTAGTGTCAAAAACGT 58.792 34.615 15.88 0.00 46.37 3.99
616 1684 7.808218 TCCGTCCCATAATATAAGACCTTTTT 58.192 34.615 0.00 0.00 0.00 1.94
617 1685 7.383156 TCCGTCCCATAATATAAGACCTTTT 57.617 36.000 0.00 0.00 0.00 2.27
618 1686 6.013639 CCTCCGTCCCATAATATAAGACCTTT 60.014 42.308 0.00 0.00 0.00 3.11
619 1687 5.484290 CCTCCGTCCCATAATATAAGACCTT 59.516 44.000 0.00 0.00 0.00 3.50
620 1688 5.024118 CCTCCGTCCCATAATATAAGACCT 58.976 45.833 0.00 0.00 0.00 3.85
621 1689 4.161754 CCCTCCGTCCCATAATATAAGACC 59.838 50.000 0.00 0.00 0.00 3.85
628 1696 4.044952 TCATACTCCCTCCGTCCCATAATA 59.955 45.833 0.00 0.00 0.00 0.98
629 1697 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
635 1703 2.108970 AGTTTCATACTCCCTCCGTCC 58.891 52.381 0.00 0.00 28.23 4.79
640 1708 9.832445 TTGATAAATGTAGTTTCATACTCCCTC 57.168 33.333 0.00 0.00 38.33 4.30
662 1730 2.415983 TCCCTCCGTCCCATATTGAT 57.584 50.000 0.00 0.00 0.00 2.57
663 1731 2.184088 TTCCCTCCGTCCCATATTGA 57.816 50.000 0.00 0.00 0.00 2.57
664 1732 4.844349 ATATTCCCTCCGTCCCATATTG 57.156 45.455 0.00 0.00 0.00 1.90
670 1750 4.324267 CAAACATATATTCCCTCCGTCCC 58.676 47.826 0.00 0.00 0.00 4.46
725 1806 9.537192 TCCCGTCATTTTTAGTGTACATATAAG 57.463 33.333 0.00 0.00 0.00 1.73
731 1812 4.563993 CCCTCCCGTCATTTTTAGTGTACA 60.564 45.833 0.00 0.00 0.00 2.90
733 1814 3.839490 TCCCTCCCGTCATTTTTAGTGTA 59.161 43.478 0.00 0.00 0.00 2.90
741 1822 2.249309 ACTACTCCCTCCCGTCATTT 57.751 50.000 0.00 0.00 0.00 2.32
742 1823 2.236395 CAAACTACTCCCTCCCGTCATT 59.764 50.000 0.00 0.00 0.00 2.57
743 1824 1.831736 CAAACTACTCCCTCCCGTCAT 59.168 52.381 0.00 0.00 0.00 3.06
744 1825 1.203087 TCAAACTACTCCCTCCCGTCA 60.203 52.381 0.00 0.00 0.00 4.35
745 1826 1.204231 GTCAAACTACTCCCTCCCGTC 59.796 57.143 0.00 0.00 0.00 4.79
747 1828 1.263356 TGTCAAACTACTCCCTCCCG 58.737 55.000 0.00 0.00 0.00 5.14
748 1829 2.638363 ACTTGTCAAACTACTCCCTCCC 59.362 50.000 0.00 0.00 0.00 4.30
769 2058 9.485206 GTCTCCTAATGTCTGTTTAAAACTGTA 57.515 33.333 0.00 0.00 0.00 2.74
771 2060 8.378172 TGTCTCCTAATGTCTGTTTAAAACTG 57.622 34.615 0.00 0.00 0.00 3.16
808 2100 5.447413 CGATATGTGATCGATTAGGTAGCGT 60.447 44.000 0.00 0.00 43.59 5.07
828 2120 2.033299 GGTTACGACCGTTGGATCGATA 59.967 50.000 0.00 0.00 40.86 2.92
1133 2426 3.007542 GGGGAGGGCTTAGGGTTG 58.992 66.667 0.00 0.00 0.00 3.77
1142 2435 2.124278 GGTCAATTCGGGGAGGGC 60.124 66.667 0.00 0.00 0.00 5.19
1154 2447 2.151202 GAGCCGTTCTTCAATGGTCAA 58.849 47.619 0.00 0.00 40.51 3.18
1156 2449 1.087501 GGAGCCGTTCTTCAATGGTC 58.912 55.000 0.00 0.00 40.51 4.02
1237 2530 1.219393 GGGCGAAGAGAAGGTCTGG 59.781 63.158 0.00 0.00 34.84 3.86
1239 2532 1.545706 GGTGGGCGAAGAGAAGGTCT 61.546 60.000 0.00 0.00 36.94 3.85
1240 2533 1.079057 GGTGGGCGAAGAGAAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
1242 2535 1.123928 ATAGGTGGGCGAAGAGAAGG 58.876 55.000 0.00 0.00 0.00 3.46
1248 2541 5.878669 AGTAAAACTAAATAGGTGGGCGAAG 59.121 40.000 0.00 0.00 0.00 3.79
1249 2542 5.807909 AGTAAAACTAAATAGGTGGGCGAA 58.192 37.500 0.00 0.00 0.00 4.70
1250 2543 5.425196 AGTAAAACTAAATAGGTGGGCGA 57.575 39.130 0.00 0.00 0.00 5.54
1251 2544 5.413523 ACAAGTAAAACTAAATAGGTGGGCG 59.586 40.000 0.00 0.00 0.00 6.13
1252 2545 6.829229 ACAAGTAAAACTAAATAGGTGGGC 57.171 37.500 0.00 0.00 0.00 5.36
1279 2572 9.249053 TGAAACTGGAAGCCAACAATATATAAA 57.751 29.630 0.00 0.00 37.60 1.40
1280 2573 8.815565 TGAAACTGGAAGCCAACAATATATAA 57.184 30.769 0.00 0.00 37.60 0.98
1281 2574 8.815565 TTGAAACTGGAAGCCAACAATATATA 57.184 30.769 0.00 0.00 37.60 0.86
1282 2575 7.716799 TTGAAACTGGAAGCCAACAATATAT 57.283 32.000 0.00 0.00 37.60 0.86
1283 2576 7.716799 ATTGAAACTGGAAGCCAACAATATA 57.283 32.000 0.00 0.00 37.60 0.86
1284 2577 6.610075 ATTGAAACTGGAAGCCAACAATAT 57.390 33.333 0.00 0.00 37.60 1.28
1285 2578 6.222389 CAATTGAAACTGGAAGCCAACAATA 58.778 36.000 0.00 0.00 37.60 1.90
1286 2579 4.961438 ATTGAAACTGGAAGCCAACAAT 57.039 36.364 0.00 0.00 37.60 2.71
1287 2580 4.440880 CAATTGAAACTGGAAGCCAACAA 58.559 39.130 0.00 0.00 37.60 2.83
1288 2581 3.740764 GCAATTGAAACTGGAAGCCAACA 60.741 43.478 10.34 0.00 37.60 3.33
1289 2582 2.802247 GCAATTGAAACTGGAAGCCAAC 59.198 45.455 10.34 0.00 37.60 3.77
1290 2583 2.699846 AGCAATTGAAACTGGAAGCCAA 59.300 40.909 10.34 0.00 37.60 4.52
1291 2584 2.318908 AGCAATTGAAACTGGAAGCCA 58.681 42.857 10.34 0.00 37.60 4.75
1292 2585 3.391506 AAGCAATTGAAACTGGAAGCC 57.608 42.857 10.34 0.00 37.60 4.35
1293 2586 4.488879 CCTAAGCAATTGAAACTGGAAGC 58.511 43.478 10.34 0.00 37.60 3.86
1297 2590 2.415893 CGCCCTAAGCAATTGAAACTGG 60.416 50.000 10.34 4.57 44.04 4.00
1312 2605 1.143838 CTGCTGCACATACGCCCTA 59.856 57.895 0.00 0.00 0.00 3.53
1328 2621 2.350772 GGAACAGCAAAATCCACGACTG 60.351 50.000 0.00 0.00 33.30 3.51
1335 2628 4.320608 TTTGAGTGGAACAGCAAAATCC 57.679 40.909 0.00 0.00 41.80 3.01
1346 2639 7.721842 TGTGTAGTTCCATTATTTTGAGTGGAA 59.278 33.333 1.79 1.79 45.68 3.53
1363 2656 3.815401 AGTTGTGAATGGCTGTGTAGTTC 59.185 43.478 0.00 0.00 0.00 3.01
1367 2660 3.070878 TCAGAGTTGTGAATGGCTGTGTA 59.929 43.478 0.00 0.00 0.00 2.90
1430 2723 7.779798 AGCAAGCAAATCCCTAATGTTATTCTA 59.220 33.333 0.00 0.00 0.00 2.10
1431 2724 6.608808 AGCAAGCAAATCCCTAATGTTATTCT 59.391 34.615 0.00 0.00 0.00 2.40
1432 2725 6.809869 AGCAAGCAAATCCCTAATGTTATTC 58.190 36.000 0.00 0.00 0.00 1.75
1443 2740 2.094545 CCAACTGTAGCAAGCAAATCCC 60.095 50.000 0.00 0.00 0.00 3.85
1444 2741 2.558359 ACCAACTGTAGCAAGCAAATCC 59.442 45.455 0.00 0.00 0.00 3.01
1633 2931 0.654683 CTTGAGCATACGAGCAAGGC 59.345 55.000 0.00 0.00 35.34 4.35
1662 2960 7.576750 TGTATTTCTACAACTAAAGCAGACG 57.423 36.000 0.00 0.00 34.92 4.18
1723 3027 1.467342 GGAATGCGGAACCAACTACAC 59.533 52.381 0.00 0.00 0.00 2.90
1730 3034 1.837439 AGATAGTGGAATGCGGAACCA 59.163 47.619 2.43 2.43 0.00 3.67
1773 3078 7.589395 ACATTCAATGTACAAGCGTTAAATCA 58.411 30.769 0.00 0.00 42.78 2.57
1793 3098 4.997565 TGCCAATAAAGCTGCTTACATTC 58.002 39.130 16.31 7.99 0.00 2.67
1797 3102 5.853282 CGATATTGCCAATAAAGCTGCTTAC 59.147 40.000 16.31 2.35 0.00 2.34
1798 3103 5.530915 ACGATATTGCCAATAAAGCTGCTTA 59.469 36.000 16.31 4.76 0.00 3.09
1799 3104 4.339247 ACGATATTGCCAATAAAGCTGCTT 59.661 37.500 9.53 9.53 0.00 3.91
1801 3106 4.222114 GACGATATTGCCAATAAAGCTGC 58.778 43.478 0.47 0.00 0.00 5.25
1802 3107 5.422666 TGACGATATTGCCAATAAAGCTG 57.577 39.130 0.47 0.00 0.00 4.24
1804 3109 7.113965 CAGAAATGACGATATTGCCAATAAAGC 59.886 37.037 0.47 0.00 0.00 3.51
1805 3110 8.131100 ACAGAAATGACGATATTGCCAATAAAG 58.869 33.333 0.47 1.57 0.00 1.85
1806 3111 7.995289 ACAGAAATGACGATATTGCCAATAAA 58.005 30.769 0.47 0.00 0.00 1.40
1809 3114 7.663081 AGATACAGAAATGACGATATTGCCAAT 59.337 33.333 0.00 0.00 0.00 3.16
1844 3158 3.129988 GCATGAACCTAGCAATTTCAGCT 59.870 43.478 0.00 0.00 45.77 4.24
1876 3190 1.229951 ATCCACCTGAAGCCTCCCA 60.230 57.895 0.00 0.00 0.00 4.37
1998 3313 5.240623 CACTTTTGCTAAATGGTCCAGTACA 59.759 40.000 0.00 0.00 0.00 2.90
2006 3321 6.152831 GGGAGTAATCACTTTTGCTAAATGGT 59.847 38.462 0.00 0.00 34.21 3.55
2053 3375 9.206870 CAGTTTAACTGCATGTATTTTCCAAAT 57.793 29.630 12.37 0.00 39.62 2.32
2232 3566 4.142403 GCATACAAGCTGAAAACCTATGCA 60.142 41.667 0.00 0.00 36.54 3.96
2269 3603 3.056465 TCCAACAAACAACTTTGACCACC 60.056 43.478 0.00 0.00 39.43 4.61
2283 3617 0.322456 CCGCCAGGATCTCCAACAAA 60.322 55.000 0.00 0.00 41.02 2.83
2312 3646 4.694760 ACTGCTCTGTGAATATATGCCA 57.305 40.909 0.00 0.00 0.00 4.92
2605 4050 5.727434 AGAAGCCAAAGGAAGCATAAATTG 58.273 37.500 0.00 0.00 0.00 2.32
2693 4160 8.388656 AGAGTAACCACCTTCAGGAAAATATA 57.611 34.615 0.00 0.00 38.94 0.86
2697 4164 5.382664 AAGAGTAACCACCTTCAGGAAAA 57.617 39.130 0.00 0.00 38.94 2.29
2698 4165 5.104277 TGAAAGAGTAACCACCTTCAGGAAA 60.104 40.000 0.00 0.00 38.94 3.13
2997 4466 4.786609 GCTTGTGTAACTTGCAGACTTGAC 60.787 45.833 0.00 0.00 38.04 3.18
3129 4598 2.408271 TCATGGTTCTGGTGATCAGC 57.592 50.000 18.01 18.01 43.06 4.26
3318 4788 3.729163 GCATTCTAGTTCTCAAAAGCCGC 60.729 47.826 0.00 0.00 0.00 6.53
3372 4842 7.259882 CCTTATGTACGTACCAATAAGTGACA 58.740 38.462 27.30 11.57 32.90 3.58
3409 4880 3.308402 CCACAGGGATGAACCTACACAAT 60.308 47.826 0.00 0.00 39.34 2.71
3441 4912 4.759516 AATGCCTACTACGGTGTTTTTG 57.240 40.909 0.00 0.00 0.00 2.44
3547 5018 5.652324 TCTCCTAAAGAGTAGTTTGAGGGT 58.348 41.667 0.00 0.00 43.71 4.34
3613 5084 4.810345 TCCCAAATTTAGTTGACAGGGTT 58.190 39.130 6.01 0.00 36.45 4.11
3670 5144 2.223157 GCATTACAAACCGCTATTCGCA 60.223 45.455 0.00 0.00 39.08 5.10
3823 5314 3.079578 ACTCACATCTTCGAGACCGTAA 58.920 45.455 0.00 0.00 37.05 3.18
3852 5343 1.227943 GCAGGAACCAGCTCACACA 60.228 57.895 1.04 0.00 0.00 3.72
3864 5355 4.641645 CAGGCACGTGGGCAGGAA 62.642 66.667 18.88 0.00 46.44 3.36
3890 5381 2.894387 GCTGGCATGGAGTCTCGC 60.894 66.667 0.00 0.00 0.00 5.03
3905 5398 1.915769 GGTGGAGGTCTGAGGTGCT 60.916 63.158 0.00 0.00 0.00 4.40
3916 5409 1.091771 CGTAGCTTGCATGGTGGAGG 61.092 60.000 14.00 0.00 0.00 4.30
3958 5451 1.009060 TGGGGTCCATAGAGGCACTAA 59.991 52.381 0.00 0.00 41.55 2.24
3959 5452 0.639943 TGGGGTCCATAGAGGCACTA 59.360 55.000 0.00 0.00 41.55 2.74
4026 5519 1.206849 TGCTCATGACTCATGCGGTTA 59.793 47.619 13.46 0.00 41.18 2.85
4029 5522 1.002792 CATTGCTCATGACTCATGCGG 60.003 52.381 13.46 9.86 41.18 5.69
4047 5540 3.201290 GGAGATCGAAATGTCACAGCAT 58.799 45.455 0.00 0.00 0.00 3.79
4118 5943 1.049289 ACTCGCTCCTATCCCCCAAC 61.049 60.000 0.00 0.00 0.00 3.77
4124 5949 3.488363 TCTTCCTAACTCGCTCCTATCC 58.512 50.000 0.00 0.00 0.00 2.59
4125 5950 4.391155 TCTCTTCCTAACTCGCTCCTATC 58.609 47.826 0.00 0.00 0.00 2.08
4187 6012 7.157347 TGCTTCCATGTTATTTGCAAAATGTA 58.843 30.769 17.19 1.02 0.00 2.29
4245 6070 1.972872 AACTAAAGCACTGCAGCAGT 58.027 45.000 23.11 23.11 46.51 4.40
4295 6129 6.515696 CGCTCTGAATTCCTAGACACATATGA 60.516 42.308 10.38 0.00 0.00 2.15
4297 6131 5.279206 CCGCTCTGAATTCCTAGACACATAT 60.279 44.000 2.27 0.00 0.00 1.78
4358 6222 0.805322 GTCTGATGCAGTGAGAGGCG 60.805 60.000 0.00 0.00 32.61 5.52
4361 6225 4.270566 GCAATAAGTCTGATGCAGTGAGAG 59.729 45.833 0.00 0.00 38.63 3.20
4535 6488 2.094957 GCTCAGGGATAGACAGATACGC 60.095 54.545 0.00 0.00 0.00 4.42
4542 6495 1.676678 GCGTGGCTCAGGGATAGACA 61.677 60.000 0.00 0.00 0.00 3.41
4693 6646 5.629849 CAGTAGAAGTACACAGTTACAGCAC 59.370 44.000 0.00 0.00 0.00 4.40
4826 6779 1.160137 GCCTGAAACATTCTGCTCGT 58.840 50.000 0.00 0.00 0.00 4.18
4862 6815 6.659242 CAGGTGTGGAGTGATAAAATAAGGTT 59.341 38.462 0.00 0.00 0.00 3.50
4948 6902 8.773033 AAAATATCTCAAAGGGCAGAATGTAT 57.227 30.769 0.00 0.00 39.31 2.29
5088 7042 6.919721 ACAACTGTCACAGTAAACAAACATT 58.080 32.000 11.89 0.00 44.62 2.71
5286 7427 3.063180 GCAATTCGGTCACAAGAGATCAG 59.937 47.826 0.00 0.00 0.00 2.90
5384 7528 7.094805 GGCATAACATTTCAGACTTAGTGTTCA 60.095 37.037 0.00 0.00 32.64 3.18
5437 7581 4.525912 AGTGAATGGATTTGGTTTGCTC 57.474 40.909 0.00 0.00 0.00 4.26
5438 7582 4.503643 CCAAGTGAATGGATTTGGTTTGCT 60.504 41.667 0.00 0.00 43.54 3.91
5460 7604 4.893829 AAAGACTAGGAAGTTCCACTCC 57.106 45.455 23.87 9.98 39.61 3.85
6091 8292 3.419793 CCAACTTCTGGCAGTTCCA 57.580 52.632 15.27 0.00 44.18 3.53
6135 8336 1.373570 CTCCGGTCATCTTCCAAAGC 58.626 55.000 0.00 0.00 0.00 3.51
6185 8386 0.606604 GCAACCGTTAGGAGGACTCA 59.393 55.000 1.32 0.00 41.02 3.41
6246 8453 1.348036 GAGGCCTTGTCTAACAGGTGT 59.652 52.381 6.77 0.00 0.00 4.16
6353 8563 7.386299 CAGAAGTAATGTATCCAGTATGAAGCC 59.614 40.741 0.00 0.00 39.69 4.35
6614 8840 1.959042 CTTCAGCACTGTTGTCAGGT 58.041 50.000 0.00 0.00 45.14 4.00
6776 9002 7.145932 GAAGAATTCAAAAGCAACTAGCCTA 57.854 36.000 8.44 0.00 46.62 3.93
6869 9102 2.545952 GGGACCAGTATATCGCACACAG 60.546 54.545 0.00 0.00 0.00 3.66
6887 9120 0.828022 ATTCGTAGCACCAATCGGGA 59.172 50.000 0.00 0.00 41.15 5.14
6941 9174 3.828451 CAGGCTTCATTTTCTTCCCTGAA 59.172 43.478 0.00 0.00 40.52 3.02
7027 9260 1.994779 GCATCCAAAATTTCAGCCACG 59.005 47.619 0.00 0.00 0.00 4.94
7028 9261 3.323751 AGCATCCAAAATTTCAGCCAC 57.676 42.857 0.00 0.00 0.00 5.01
7227 9544 1.187087 TGTTTGTCTTTTTGCGGGGT 58.813 45.000 0.00 0.00 0.00 4.95
7327 9644 7.351414 TGAGAAAGAACATAACGATGAAGTG 57.649 36.000 0.00 0.00 36.48 3.16
7335 9652 5.635280 TGAGCTCTTGAGAAAGAACATAACG 59.365 40.000 16.19 0.00 0.00 3.18
7414 9825 0.955919 GGCAGCAAAAGTCCTAGCGT 60.956 55.000 0.00 0.00 0.00 5.07
7461 10938 3.060473 GCTGTCCGATTGCGTAGTAAATC 60.060 47.826 0.00 0.00 34.63 2.17
7555 11032 3.568007 TGTGGTGGCAGAGTTTGTTTATC 59.432 43.478 0.00 0.00 0.00 1.75
7700 11177 2.650116 GGAGCTCTCTGGCACGGAA 61.650 63.158 14.64 0.00 46.55 4.30
7721 11198 3.041940 GTGTTCCCCGTCGTGCTG 61.042 66.667 0.00 0.00 0.00 4.41
7723 11200 3.343421 GTGTGTTCCCCGTCGTGC 61.343 66.667 0.00 0.00 0.00 5.34
7725 11202 4.289245 CGGTGTGTTCCCCGTCGT 62.289 66.667 0.00 0.00 39.38 4.34
7726 11203 3.502990 TTCGGTGTGTTCCCCGTCG 62.503 63.158 0.00 0.00 44.51 5.12
7728 11205 2.424302 CTTCGGTGTGTTCCCCGT 59.576 61.111 0.00 0.00 44.51 5.28
7729 11206 3.047877 GCTTCGGTGTGTTCCCCG 61.048 66.667 0.00 0.00 45.55 5.73
7730 11207 1.966451 CAGCTTCGGTGTGTTCCCC 60.966 63.158 0.00 0.00 0.00 4.81
7731 11208 0.034337 TACAGCTTCGGTGTGTTCCC 59.966 55.000 8.77 0.00 44.23 3.97
7732 11209 1.732259 CATACAGCTTCGGTGTGTTCC 59.268 52.381 8.77 0.00 44.23 3.62
7734 11211 2.143122 CACATACAGCTTCGGTGTGTT 58.857 47.619 8.77 0.00 44.23 3.32
7735 11212 1.070134 ACACATACAGCTTCGGTGTGT 59.930 47.619 14.68 14.68 45.98 3.72
7736 11213 1.795768 ACACATACAGCTTCGGTGTG 58.204 50.000 13.68 13.68 44.23 3.82
7737 11214 1.070134 ACACACATACAGCTTCGGTGT 59.930 47.619 4.07 4.07 46.27 4.16
7738 11215 1.795768 ACACACATACAGCTTCGGTG 58.204 50.000 0.00 0.00 37.06 4.94
7739 11216 2.143122 CAACACACATACAGCTTCGGT 58.857 47.619 0.00 0.00 0.00 4.69
7740 11217 1.464608 CCAACACACATACAGCTTCGG 59.535 52.381 0.00 0.00 0.00 4.30
7742 11219 1.812571 CCCCAACACACATACAGCTTC 59.187 52.381 0.00 0.00 0.00 3.86
7743 11220 1.547675 CCCCCAACACACATACAGCTT 60.548 52.381 0.00 0.00 0.00 3.74
7744 11221 0.038166 CCCCCAACACACATACAGCT 59.962 55.000 0.00 0.00 0.00 4.24
7760 11237 0.824109 GCAATTTTACTGCCTCCCCC 59.176 55.000 0.00 0.00 33.51 5.40
7761 11238 1.555967 TGCAATTTTACTGCCTCCCC 58.444 50.000 0.00 0.00 39.13 4.81
7763 11240 4.207165 TCCTATGCAATTTTACTGCCTCC 58.793 43.478 0.00 0.00 39.13 4.30
7764 11241 5.835113 TTCCTATGCAATTTTACTGCCTC 57.165 39.130 0.00 0.00 39.13 4.70
7765 11242 5.893255 TGATTCCTATGCAATTTTACTGCCT 59.107 36.000 0.00 0.00 39.13 4.75
7766 11243 6.147864 TGATTCCTATGCAATTTTACTGCC 57.852 37.500 0.00 0.00 39.13 4.85
7767 11244 7.922278 TGATTGATTCCTATGCAATTTTACTGC 59.078 33.333 0.00 0.00 40.35 4.40
7768 11245 9.976511 ATGATTGATTCCTATGCAATTTTACTG 57.023 29.630 0.00 0.00 32.80 2.74
7770 11247 9.970395 TGATGATTGATTCCTATGCAATTTTAC 57.030 29.630 0.00 0.00 32.80 2.01
7772 11249 9.489084 CATGATGATTGATTCCTATGCAATTTT 57.511 29.630 0.00 0.00 32.80 1.82
7773 11250 8.866093 TCATGATGATTGATTCCTATGCAATTT 58.134 29.630 0.00 0.00 32.80 1.82
7775 11252 7.670140 AGTCATGATGATTGATTCCTATGCAAT 59.330 33.333 0.00 0.00 35.14 3.56
7781 14683 7.384524 AGGAAGTCATGATGATTGATTCCTA 57.615 36.000 21.94 0.00 38.24 2.94
7937 14840 1.686587 TCCTTCGAACTCTCACAGCAA 59.313 47.619 0.00 0.00 0.00 3.91
7951 14854 2.487762 TGCAGCAACCTTAAATCCTTCG 59.512 45.455 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.