Multiple sequence alignment - TraesCS5D01G447700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G447700 chr5D 100.000 4979 0 0 1 4979 497829176 497824198 0.000000e+00 9195
1 TraesCS5D01G447700 chr5D 100.000 316 0 0 5420 5735 497823757 497823442 8.280000e-163 584
2 TraesCS5D01G447700 chr5A 95.176 4996 183 19 1 4979 621855867 621850913 0.000000e+00 7838
3 TraesCS5D01G447700 chr5A 97.720 307 7 0 5429 5735 621850657 621850351 3.940000e-146 529
4 TraesCS5D01G447700 chr5B 94.745 4548 163 22 359 4868 616972133 616967624 0.000000e+00 7005
5 TraesCS5D01G447700 chr5B 91.916 334 18 6 1 331 616972456 616972129 5.240000e-125 459


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G447700 chr5D 497823442 497829176 5734 True 4889.5 9195 100.0000 1 5735 2 chr5D.!!$R1 5734
1 TraesCS5D01G447700 chr5A 621850351 621855867 5516 True 4183.5 7838 96.4480 1 5735 2 chr5A.!!$R1 5734
2 TraesCS5D01G447700 chr5B 616967624 616972456 4832 True 3732.0 7005 93.3305 1 4868 2 chr5B.!!$R1 4867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 828 0.381801 CCACACCAACTGAGCACAAC 59.618 55.0 0.0 0.0 0.00 3.32 F
1197 1232 1.433121 AGAGGGAGATCAAGGATGGC 58.567 55.0 0.0 0.0 0.00 4.40 F
1700 1735 0.031857 CTTGCACGGTTGGCATTTGA 59.968 50.0 0.0 0.0 41.58 2.69 F
2824 2859 0.035439 CGGTTGTTGCCTGGATAGGT 60.035 55.0 0.0 0.0 46.41 3.08 F
3620 3656 0.533755 GATGGCTGGTCTGGAATCGG 60.534 60.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 1706 0.037232 ACCGTGCAAGGCTAGTCTTC 60.037 55.0 19.37 3.24 33.69 2.87 R
2824 2859 0.396435 ACTTCCACTGATGTCGGCAA 59.604 50.0 0.00 0.00 0.00 4.52 R
3308 3344 0.044855 AGGGTGAGGTCTAAGGGCAT 59.955 55.0 0.00 0.00 0.00 4.40 R
3852 3888 0.601046 TCTGCAGGTTCAACTCAGCG 60.601 55.0 15.13 0.00 0.00 5.18 R
4821 4886 2.910688 ACACAGGTACCAGAACACTG 57.089 50.0 15.94 3.96 35.40 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.119743 TCGCTTGAATTTTGCCATCTGAG 60.120 43.478 0.00 0.00 0.00 3.35
48 52 2.425143 TTGCCATCTGAGTCCATTCC 57.575 50.000 0.00 0.00 0.00 3.01
63 67 7.092712 TGAGTCCATTCCTCTCATTTTCTATGT 60.093 37.037 0.00 0.00 34.00 2.29
72 76 7.025963 CCTCTCATTTTCTATGTGCTGAAAAC 58.974 38.462 0.00 0.00 42.49 2.43
95 99 2.903798 CACTGCCCTCAGATTCTTCTC 58.096 52.381 0.00 0.00 42.95 2.87
341 348 1.149174 CCGAGCTGCATATTGGGGT 59.851 57.895 1.02 0.00 0.00 4.95
361 368 3.941483 GGTTGTATACTTGTCATGCAGCT 59.059 43.478 4.17 0.00 0.00 4.24
362 369 4.396166 GGTTGTATACTTGTCATGCAGCTT 59.604 41.667 4.17 0.00 0.00 3.74
381 388 7.014230 TGCAGCTTTAGAAATAAAAGGTTGAGT 59.986 33.333 0.00 0.00 41.41 3.41
383 390 9.399403 CAGCTTTAGAAATAAAAGGTTGAGTTC 57.601 33.333 0.00 0.00 41.41 3.01
601 612 3.369471 CCTTTCCTGAACCGAGCAGATAA 60.369 47.826 0.00 0.00 35.39 1.75
602 613 4.446371 CTTTCCTGAACCGAGCAGATAAT 58.554 43.478 0.00 0.00 35.39 1.28
645 673 8.627403 CATGACATTAGAAAATATCCAGCTGTT 58.373 33.333 13.81 2.03 0.00 3.16
646 674 7.988737 TGACATTAGAAAATATCCAGCTGTTG 58.011 34.615 13.81 0.00 0.00 3.33
659 687 3.542648 CAGCTGTTGGATGATCATCTGT 58.457 45.455 29.85 0.46 37.92 3.41
676 704 2.632996 TCTGTTGGTGTAGGTTCTCCAG 59.367 50.000 0.00 0.00 33.48 3.86
800 828 0.381801 CCACACCAACTGAGCACAAC 59.618 55.000 0.00 0.00 0.00 3.32
813 841 4.464008 TGAGCACAACCATCTTTCTTCTT 58.536 39.130 0.00 0.00 0.00 2.52
843 871 4.612932 GGCTGAAAGACAAGATCACATC 57.387 45.455 0.00 0.00 46.27 3.06
844 872 3.376546 GGCTGAAAGACAAGATCACATCC 59.623 47.826 0.00 0.00 46.27 3.51
845 873 4.005650 GCTGAAAGACAAGATCACATCCA 58.994 43.478 0.00 0.00 34.07 3.41
846 874 4.639310 GCTGAAAGACAAGATCACATCCAT 59.361 41.667 0.00 0.00 34.07 3.41
847 875 5.220815 GCTGAAAGACAAGATCACATCCATC 60.221 44.000 0.00 0.00 34.07 3.51
848 876 6.058553 TGAAAGACAAGATCACATCCATCT 57.941 37.500 0.00 0.00 31.51 2.90
852 880 3.542648 ACAAGATCACATCCATCTGCAG 58.457 45.455 7.63 7.63 30.62 4.41
909 937 8.047310 AGGTTCTTAACTTCTCTTTCTTCACAA 58.953 33.333 0.00 0.00 0.00 3.33
966 1001 9.672673 TCCTTTTCTTCTCTGAAATCGAATATT 57.327 29.630 0.00 0.00 36.07 1.28
971 1006 8.267620 TCTTCTCTGAAATCGAATATTTTGCA 57.732 30.769 0.00 0.00 0.00 4.08
1062 1097 2.015456 TCATACGGGAGATGCAGGAT 57.985 50.000 0.00 0.00 0.00 3.24
1188 1223 3.218453 TGTCATCGAGAAGAGGGAGATC 58.782 50.000 0.00 0.00 0.00 2.75
1197 1232 1.433121 AGAGGGAGATCAAGGATGGC 58.567 55.000 0.00 0.00 0.00 4.40
1320 1355 2.016704 GTCTGCGGTGAGTCGTGTG 61.017 63.158 0.00 0.00 0.00 3.82
1404 1439 7.938715 AGCTAGCAGATATTTTGGAGAAATTG 58.061 34.615 18.83 0.00 0.00 2.32
1410 1445 2.810439 TTTTGGAGAAATTGGGCGTG 57.190 45.000 0.00 0.00 0.00 5.34
1432 1467 1.899814 TCAAGACAACGGCAGATACCT 59.100 47.619 0.00 0.00 0.00 3.08
1588 1623 4.211164 TGTTGTTTGAGATAAGCGACAGTG 59.789 41.667 0.00 0.00 0.00 3.66
1597 1632 3.127533 GCGACAGTGATGCACCCC 61.128 66.667 0.00 0.00 34.49 4.95
1621 1656 1.651987 CAGTAATGCACCTGTACCCG 58.348 55.000 0.00 0.00 0.00 5.28
1671 1706 1.721093 TAGGTGTTGGTGGGGTTGGG 61.721 60.000 0.00 0.00 0.00 4.12
1698 1733 1.367102 CCTTGCACGGTTGGCATTT 59.633 52.632 0.00 0.00 41.58 2.32
1700 1735 0.031857 CTTGCACGGTTGGCATTTGA 59.968 50.000 0.00 0.00 41.58 2.69
2109 2144 4.439305 GTTGCTATTCAGAAACCATGCA 57.561 40.909 0.00 0.00 34.57 3.96
2409 2444 2.485426 ACTCACTGAAATGTGGATTGCG 59.515 45.455 0.00 0.00 38.40 4.85
2604 2639 3.491619 CGAAGGATGAGTATGTCAGGGTG 60.492 52.174 0.00 0.00 39.07 4.61
2727 2762 4.301628 GCACCTTGATTGTTTGGAAGAAG 58.698 43.478 0.00 0.00 0.00 2.85
2824 2859 0.035439 CGGTTGTTGCCTGGATAGGT 60.035 55.000 0.00 0.00 46.41 3.08
2913 2948 3.111098 GCAAACATCATTGATTCGGCTC 58.889 45.455 0.00 0.00 31.84 4.70
2970 3005 2.485122 CGGGAAAGTGAATGCGCC 59.515 61.111 4.18 0.00 0.00 6.53
3077 3112 1.618837 CGGAGGACAAACTCTTCTCCA 59.381 52.381 0.00 0.00 42.94 3.86
3094 3129 4.096003 ATGGCCACGGGGAGTTCG 62.096 66.667 8.67 0.00 35.59 3.95
3114 3149 2.461695 GATGTCAGGAAGGAGAGTGGA 58.538 52.381 0.00 0.00 0.00 4.02
3139 3174 1.754226 GACTAGGTGAGCTGAAGGAGG 59.246 57.143 0.00 0.00 0.00 4.30
3297 3333 9.343539 AGGGCTTTAACTTCTGATATTGATAAC 57.656 33.333 0.00 0.00 0.00 1.89
3308 3344 7.209475 TCTGATATTGATAACGATGTGCTCAA 58.791 34.615 0.00 0.00 0.00 3.02
3419 3455 4.453819 GCTGACTGCATTGAGTTCTTTAGT 59.546 41.667 0.00 0.00 42.31 2.24
3620 3656 0.533755 GATGGCTGGTCTGGAATCGG 60.534 60.000 0.00 0.00 0.00 4.18
3738 3774 8.514594 GTTGAAGTCAAAATATCACCTGATTCA 58.485 33.333 0.00 0.00 37.63 2.57
3852 3888 3.189287 CCACTGAGCAACTAAACCATGTC 59.811 47.826 0.00 0.00 0.00 3.06
3883 3919 4.202357 TGAACCTGCAGAACTGTACAGATT 60.202 41.667 29.30 18.24 31.67 2.40
3894 3930 2.009051 TGTACAGATTCAATGCCAGCG 58.991 47.619 0.00 0.00 0.00 5.18
3963 3999 3.734231 ACTGTTCAACGTTACTGTCATCG 59.266 43.478 0.00 0.00 0.00 3.84
4141 4177 6.751157 ACATCATTGTCATTTGCTTCTGAAA 58.249 32.000 0.00 0.00 0.00 2.69
4142 4178 7.211573 ACATCATTGTCATTTGCTTCTGAAAA 58.788 30.769 0.00 0.00 0.00 2.29
4196 4232 7.444299 ACCATTAAAGATTGCAATGAACTTGT 58.556 30.769 18.59 5.25 37.18 3.16
4214 4250 8.087750 TGAACTTGTTTCATTGGATGGATTTAC 58.912 33.333 0.00 0.00 39.45 2.01
4222 4258 9.656040 TTTCATTGGATGGATTTACAAATCTTG 57.344 29.630 12.99 0.00 43.33 3.02
4242 4278 1.275573 GGTGCTCTCCGGAAGTTAGTT 59.724 52.381 5.23 0.00 0.00 2.24
4276 4312 2.532843 ACAATTTCTGCTCCTTGCCAT 58.467 42.857 0.00 0.00 42.00 4.40
4357 4393 0.253327 GTTTCTCCCCGAAGATGGCT 59.747 55.000 0.00 0.00 32.21 4.75
4821 4886 4.657436 AGTCGAACCAGATATCACTTCC 57.343 45.455 5.32 0.00 0.00 3.46
4917 4982 1.263356 TTACCAGCCGCAACTCTACT 58.737 50.000 0.00 0.00 0.00 2.57
4918 4983 1.263356 TACCAGCCGCAACTCTACTT 58.737 50.000 0.00 0.00 0.00 2.24
5514 5579 3.569194 TTCTAGCACTTGAACCAACCA 57.431 42.857 0.00 0.00 0.00 3.67
5522 5587 3.507233 CACTTGAACCAACCAGCATATGT 59.493 43.478 4.29 0.00 0.00 2.29
5605 5670 2.027192 GTCCCACAAGGCTGATTGAGTA 60.027 50.000 0.00 0.00 34.20 2.59
5651 5716 8.856490 TTTGTTTCTAGTTCATTCTTTTCTGC 57.144 30.769 0.00 0.00 0.00 4.26
5655 5720 5.784177 TCTAGTTCATTCTTTTCTGCGAGT 58.216 37.500 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.238593 GCACATAGAAAATGAGAGGAATGGAC 60.239 42.308 0.00 0.00 0.00 4.02
48 52 6.740002 CGTTTTCAGCACATAGAAAATGAGAG 59.260 38.462 12.17 0.00 46.22 3.20
63 67 2.721231 GCAGTGCCGTTTTCAGCA 59.279 55.556 2.85 0.00 36.44 4.41
277 284 3.788227 TTGTACCAAAGCATCTGTCCT 57.212 42.857 0.00 0.00 0.00 3.85
305 312 4.550255 GCTCGGATACAGTAAAAACATCGC 60.550 45.833 0.00 0.00 0.00 4.58
306 313 4.804139 AGCTCGGATACAGTAAAAACATCG 59.196 41.667 0.00 0.00 0.00 3.84
308 315 4.332819 GCAGCTCGGATACAGTAAAAACAT 59.667 41.667 0.00 0.00 0.00 2.71
312 319 3.603158 TGCAGCTCGGATACAGTAAAA 57.397 42.857 0.00 0.00 0.00 1.52
341 348 7.102993 TCTAAAGCTGCATGACAAGTATACAA 58.897 34.615 5.50 0.00 0.00 2.41
381 388 2.091885 AGACAACCAAGCCAGAAAGGAA 60.092 45.455 0.00 0.00 41.22 3.36
383 390 1.610522 CAGACAACCAAGCCAGAAAGG 59.389 52.381 0.00 0.00 41.84 3.11
645 673 4.141642 CCTACACCAACAGATGATCATCCA 60.142 45.833 28.23 5.54 38.58 3.41
646 674 4.141620 ACCTACACCAACAGATGATCATCC 60.142 45.833 28.23 13.23 38.58 3.51
647 675 5.028549 ACCTACACCAACAGATGATCATC 57.971 43.478 25.42 25.42 38.09 2.92
648 676 5.190528 AGAACCTACACCAACAGATGATCAT 59.809 40.000 8.25 8.25 0.00 2.45
649 677 4.532126 AGAACCTACACCAACAGATGATCA 59.468 41.667 0.00 0.00 0.00 2.92
650 678 5.091261 AGAACCTACACCAACAGATGATC 57.909 43.478 0.00 0.00 0.00 2.92
651 679 4.080863 GGAGAACCTACACCAACAGATGAT 60.081 45.833 0.00 0.00 0.00 2.45
652 680 3.260884 GGAGAACCTACACCAACAGATGA 59.739 47.826 0.00 0.00 0.00 2.92
653 681 3.007940 TGGAGAACCTACACCAACAGATG 59.992 47.826 0.00 0.00 37.04 2.90
654 682 3.248024 TGGAGAACCTACACCAACAGAT 58.752 45.455 0.00 0.00 37.04 2.90
655 683 2.632996 CTGGAGAACCTACACCAACAGA 59.367 50.000 0.00 0.00 37.04 3.41
656 684 2.872038 GCTGGAGAACCTACACCAACAG 60.872 54.545 0.00 0.00 37.04 3.16
657 685 1.071699 GCTGGAGAACCTACACCAACA 59.928 52.381 0.00 0.00 37.04 3.33
658 686 1.610886 GGCTGGAGAACCTACACCAAC 60.611 57.143 0.00 0.00 37.04 3.77
659 687 0.690762 GGCTGGAGAACCTACACCAA 59.309 55.000 0.00 0.00 37.04 3.67
676 704 4.082571 GGATGCATGTGTATATTCCTTGGC 60.083 45.833 2.46 0.00 0.00 4.52
839 867 0.844660 AGATGGCTGCAGATGGATGT 59.155 50.000 20.43 0.00 0.00 3.06
840 868 1.239347 CAGATGGCTGCAGATGGATG 58.761 55.000 20.43 6.08 34.95 3.51
841 869 3.727738 CAGATGGCTGCAGATGGAT 57.272 52.632 20.43 2.12 34.95 3.41
852 880 1.688772 AATGGTGATGAGCAGATGGC 58.311 50.000 0.00 0.00 45.30 4.40
939 974 7.986085 ATTCGATTTCAGAGAAGAAAAGGAA 57.014 32.000 0.00 0.00 40.54 3.36
971 1006 8.443176 TGAGAGGAGATATTATTCCTGCAAATT 58.557 33.333 8.58 0.00 43.76 1.82
1062 1097 3.537580 CTTTATGTAGGCCAAAGCGGTA 58.462 45.455 5.01 0.00 41.24 4.02
1188 1223 0.329261 TCCTCTGGTTGCCATCCTTG 59.671 55.000 0.00 0.00 30.82 3.61
1197 1232 0.615331 TTAGCAGCCTCCTCTGGTTG 59.385 55.000 0.73 0.00 41.51 3.77
1320 1355 4.941873 CCCAAGTAAATACAGGTTGAGGTC 59.058 45.833 0.00 0.00 0.00 3.85
1404 1439 2.604174 CGTTGTCTTGACCACGCCC 61.604 63.158 12.97 0.00 0.00 6.13
1410 1445 2.000447 GTATCTGCCGTTGTCTTGACC 59.000 52.381 0.00 0.00 0.00 4.02
1588 1623 1.906105 TTACTGGGTCGGGGTGCATC 61.906 60.000 0.00 0.00 0.00 3.91
1597 1632 0.036388 ACAGGTGCATTACTGGGTCG 60.036 55.000 16.87 0.00 39.00 4.79
1621 1656 8.887717 GGATATAATATCAATGCTTGAGTCACC 58.112 37.037 0.00 0.00 43.98 4.02
1625 1660 8.939929 CAACGGATATAATATCAATGCTTGAGT 58.060 33.333 0.00 0.00 43.98 3.41
1639 1674 6.053005 CACCAACACCTACAACGGATATAAT 58.947 40.000 0.00 0.00 0.00 1.28
1648 1683 0.184211 ACCCCACCAACACCTACAAC 59.816 55.000 0.00 0.00 0.00 3.32
1651 1686 0.538746 CCAACCCCACCAACACCTAC 60.539 60.000 0.00 0.00 0.00 3.18
1671 1706 0.037232 ACCGTGCAAGGCTAGTCTTC 60.037 55.000 19.37 3.24 33.69 2.87
1695 1730 7.537715 TCATGCGTATTTGTTCATCTTCAAAT 58.462 30.769 7.95 7.95 43.58 2.32
1698 1733 6.149308 AGTTCATGCGTATTTGTTCATCTTCA 59.851 34.615 0.00 0.00 0.00 3.02
1700 1735 6.500684 AGTTCATGCGTATTTGTTCATCTT 57.499 33.333 0.00 0.00 0.00 2.40
2109 2144 4.044065 TGTCCTGGGTATTTCTCACCAAAT 59.956 41.667 0.00 0.00 37.84 2.32
2147 2182 6.677187 GCGACAAATTTGTATTCCTACTTCCC 60.677 42.308 23.33 5.86 42.43 3.97
2409 2444 1.662044 CCTCTGCACAAAACCCTGC 59.338 57.895 0.00 0.00 0.00 4.85
2604 2639 7.981789 GGGATCTCCTTTTGTTTATCATTTTCC 59.018 37.037 0.00 0.00 35.95 3.13
2727 2762 7.068716 AGGGATAATTTTAAGCAAGACCATGTC 59.931 37.037 0.00 0.00 0.00 3.06
2748 2783 6.331042 TCTTGAATACATCATCTGGAAGGGAT 59.669 38.462 0.00 0.00 38.03 3.85
2824 2859 0.396435 ACTTCCACTGATGTCGGCAA 59.604 50.000 0.00 0.00 0.00 4.52
2970 3005 3.731652 TTCATGTTTGCAGGAAGGTTG 57.268 42.857 0.00 0.00 40.00 3.77
3077 3112 4.096003 CGAACTCCCCGTGGCCAT 62.096 66.667 9.72 0.00 0.00 4.40
3094 3129 2.461695 TCCACTCTCCTTCCTGACATC 58.538 52.381 0.00 0.00 0.00 3.06
3114 3149 3.957497 CCTTCAGCTCACCTAGTCTGTAT 59.043 47.826 0.00 0.00 33.59 2.29
3130 3165 7.829211 TCCACTAATATTTTTCACCTCCTTCAG 59.171 37.037 0.00 0.00 0.00 3.02
3237 3273 5.415701 GCTCCACTCAAGTTCCAAATATTCA 59.584 40.000 0.00 0.00 0.00 2.57
3308 3344 0.044855 AGGGTGAGGTCTAAGGGCAT 59.955 55.000 0.00 0.00 0.00 4.40
3419 3455 3.318839 CCAACCAATGCAGTTCTCAAGAA 59.681 43.478 0.00 0.00 0.00 2.52
3435 3471 1.151908 GGGCAACTGTACCCAACCA 59.848 57.895 12.66 0.00 46.22 3.67
3721 3757 3.632145 GGCGGTGAATCAGGTGATATTTT 59.368 43.478 0.00 0.00 33.73 1.82
3738 3774 1.975660 TTAAACAAGAAGCTGGCGGT 58.024 45.000 0.00 0.00 0.00 5.68
3852 3888 0.601046 TCTGCAGGTTCAACTCAGCG 60.601 55.000 15.13 0.00 0.00 5.18
3883 3919 2.497792 AATCCACCCGCTGGCATTGA 62.498 55.000 0.00 0.00 40.39 2.57
3894 3930 3.010420 GCTAAGTCTGTGAAATCCACCC 58.990 50.000 0.00 0.00 45.09 4.61
3963 3999 3.060602 GTCAACTGCTTCTGTACTGACC 58.939 50.000 1.37 0.00 0.00 4.02
4051 4087 2.427095 GGCCTTGCAAATACCTTGGTAG 59.573 50.000 0.00 0.00 35.38 3.18
4080 4116 1.170290 TGAGCACCAACGTCGAGAGA 61.170 55.000 0.00 0.00 38.16 3.10
4141 4177 3.175710 AGCAACGAGGTGGGGGTT 61.176 61.111 0.00 0.00 0.00 4.11
4142 4178 3.637273 GAGCAACGAGGTGGGGGT 61.637 66.667 0.00 0.00 0.00 4.95
4191 4227 7.537596 TGTAAATCCATCCAATGAAACAAGT 57.462 32.000 0.00 0.00 0.00 3.16
4194 4230 8.814931 AGATTTGTAAATCCATCCAATGAAACA 58.185 29.630 12.41 0.00 44.55 2.83
4196 4232 9.656040 CAAGATTTGTAAATCCATCCAATGAAA 57.344 29.630 12.41 0.00 44.55 2.69
4214 4250 1.089920 CCGGAGAGCACCAAGATTTG 58.910 55.000 0.00 0.00 0.00 2.32
4222 4258 0.896226 ACTAACTTCCGGAGAGCACC 59.104 55.000 3.34 0.00 0.00 5.01
4276 4312 7.301420 AGAGATCCCACTATATTCAAGTCAGA 58.699 38.462 0.00 0.00 0.00 3.27
4357 4393 1.148949 TCTGCACAGAAGCTGGCAA 59.851 52.632 0.00 2.61 37.28 4.52
4821 4886 2.910688 ACACAGGTACCAGAACACTG 57.089 50.000 15.94 3.96 35.40 3.66
4946 5011 5.800438 CAGCTGATGAAAATCTGAACACATG 59.200 40.000 8.42 0.00 0.00 3.21
5419 5484 7.633193 ACAAGTCATCCAACTCTACTACTAG 57.367 40.000 0.00 0.00 0.00 2.57
5420 5485 8.954350 GTTACAAGTCATCCAACTCTACTACTA 58.046 37.037 0.00 0.00 0.00 1.82
5421 5486 7.093858 GGTTACAAGTCATCCAACTCTACTACT 60.094 40.741 0.00 0.00 0.00 2.57
5422 5487 7.034397 GGTTACAAGTCATCCAACTCTACTAC 58.966 42.308 0.00 0.00 0.00 2.73
5423 5488 6.722590 TGGTTACAAGTCATCCAACTCTACTA 59.277 38.462 0.00 0.00 0.00 1.82
5424 5489 5.542635 TGGTTACAAGTCATCCAACTCTACT 59.457 40.000 0.00 0.00 0.00 2.57
5425 5490 5.790593 TGGTTACAAGTCATCCAACTCTAC 58.209 41.667 0.00 0.00 0.00 2.59
5426 5491 6.428083 TTGGTTACAAGTCATCCAACTCTA 57.572 37.500 0.00 0.00 33.95 2.43
5427 5492 4.974645 TGGTTACAAGTCATCCAACTCT 57.025 40.909 0.00 0.00 0.00 3.24
5428 5493 5.048713 CCTTTGGTTACAAGTCATCCAACTC 60.049 44.000 0.00 0.00 37.80 3.01
5429 5494 4.827284 CCTTTGGTTACAAGTCATCCAACT 59.173 41.667 0.00 0.00 37.80 3.16
5430 5495 4.022329 CCCTTTGGTTACAAGTCATCCAAC 60.022 45.833 0.00 0.00 37.80 3.77
5431 5496 4.148838 CCCTTTGGTTACAAGTCATCCAA 58.851 43.478 0.00 0.00 37.97 3.53
5514 5579 7.686438 TGTTTCTAACACATGAACATATGCT 57.314 32.000 1.58 0.00 36.25 3.79
5559 5624 5.367945 AGCTTCCTACCATTTCCGAATTA 57.632 39.130 0.00 0.00 0.00 1.40
5605 5670 9.927081 AACAAAATATCAGGATTTATCACCTCT 57.073 29.630 0.00 0.00 33.91 3.69
5651 5716 1.725164 GGAAAACGCTCTACCAACTCG 59.275 52.381 0.00 0.00 0.00 4.18
5655 5720 1.418637 ACCTGGAAAACGCTCTACCAA 59.581 47.619 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.