Multiple sequence alignment - TraesCS5D01G447600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G447600 | chr5D | 100.000 | 3418 | 0 | 0 | 1 | 3418 | 497819250 | 497822667 | 0.000000e+00 | 6312.0 |
1 | TraesCS5D01G447600 | chr5D | 76.395 | 1470 | 246 | 64 | 1022 | 2459 | 423535354 | 423533954 | 0.000000e+00 | 699.0 |
2 | TraesCS5D01G447600 | chr5D | 75.398 | 1569 | 288 | 69 | 1065 | 2574 | 47531058 | 47532587 | 0.000000e+00 | 669.0 |
3 | TraesCS5D01G447600 | chr5D | 80.423 | 189 | 25 | 9 | 3233 | 3418 | 497814953 | 497815132 | 2.140000e-27 | 134.0 |
4 | TraesCS5D01G447600 | chr5D | 81.651 | 109 | 15 | 2 | 3313 | 3417 | 497810728 | 497810835 | 6.080000e-13 | 86.1 |
5 | TraesCS5D01G447600 | chr5A | 90.582 | 2920 | 188 | 44 | 1 | 2899 | 621846455 | 621849308 | 0.000000e+00 | 3788.0 |
6 | TraesCS5D01G447600 | chr5A | 75.876 | 1484 | 254 | 68 | 1161 | 2577 | 37935201 | 37936647 | 0.000000e+00 | 662.0 |
7 | TraesCS5D01G447600 | chr5A | 75.093 | 1618 | 278 | 80 | 875 | 2459 | 537125123 | 537123598 | 1.030000e-179 | 640.0 |
8 | TraesCS5D01G447600 | chr5A | 83.333 | 222 | 22 | 10 | 3175 | 3394 | 621849464 | 621849672 | 1.250000e-44 | 191.0 |
9 | TraesCS5D01G447600 | chr5A | 85.165 | 182 | 23 | 3 | 33 | 213 | 492627306 | 492627484 | 2.090000e-42 | 183.0 |
10 | TraesCS5D01G447600 | chr5B | 95.618 | 890 | 35 | 3 | 749 | 1636 | 616957966 | 616958853 | 0.000000e+00 | 1424.0 |
11 | TraesCS5D01G447600 | chr5B | 86.906 | 863 | 82 | 15 | 2105 | 2956 | 616958850 | 616959692 | 0.000000e+00 | 939.0 |
12 | TraesCS5D01G447600 | chr5B | 88.696 | 115 | 11 | 2 | 421 | 535 | 616956212 | 616956324 | 4.600000e-29 | 139.0 |
13 | TraesCS5D01G447600 | chr6A | 78.201 | 1312 | 211 | 38 | 1070 | 2345 | 17947374 | 17946102 | 0.000000e+00 | 769.0 |
14 | TraesCS5D01G447600 | chr3A | 74.529 | 1700 | 291 | 69 | 936 | 2567 | 696348378 | 696346753 | 8.110000e-171 | 610.0 |
15 | TraesCS5D01G447600 | chr3A | 79.279 | 222 | 33 | 12 | 1 | 213 | 661873842 | 661874059 | 3.560000e-30 | 143.0 |
16 | TraesCS5D01G447600 | chr6B | 80.095 | 839 | 123 | 29 | 1523 | 2345 | 30341692 | 30340882 | 4.920000e-163 | 584.0 |
17 | TraesCS5D01G447600 | chr6B | 88.235 | 255 | 30 | 0 | 1612 | 1866 | 718253189 | 718253443 | 4.290000e-79 | 305.0 |
18 | TraesCS5D01G447600 | chr1B | 74.734 | 1409 | 262 | 57 | 1167 | 2529 | 630820226 | 630821586 | 8.340000e-151 | 544.0 |
19 | TraesCS5D01G447600 | chr7B | 77.907 | 946 | 142 | 37 | 1609 | 2519 | 661720011 | 661719098 | 8.400000e-146 | 527.0 |
20 | TraesCS5D01G447600 | chr7B | 73.696 | 920 | 206 | 22 | 1065 | 1963 | 620679108 | 620678204 | 3.290000e-85 | 326.0 |
21 | TraesCS5D01G447600 | chr7B | 76.106 | 565 | 108 | 21 | 1015 | 1568 | 661724546 | 661723998 | 1.560000e-68 | 270.0 |
22 | TraesCS5D01G447600 | chr7D | 74.780 | 1134 | 213 | 48 | 746 | 1847 | 602291535 | 602292627 | 3.130000e-120 | 442.0 |
23 | TraesCS5D01G447600 | chrUn | 77.171 | 806 | 150 | 23 | 1064 | 1850 | 87219811 | 87220601 | 4.050000e-119 | 438.0 |
24 | TraesCS5D01G447600 | chr2B | 84.494 | 316 | 43 | 6 | 14 | 326 | 655518252 | 655517940 | 1.190000e-79 | 307.0 |
25 | TraesCS5D01G447600 | chr2B | 81.761 | 318 | 43 | 10 | 12 | 317 | 5810490 | 5810804 | 5.660000e-63 | 252.0 |
26 | TraesCS5D01G447600 | chr2D | 84.365 | 307 | 42 | 6 | 14 | 319 | 548600157 | 548599856 | 2.580000e-76 | 296.0 |
27 | TraesCS5D01G447600 | chr7A | 83.391 | 289 | 37 | 9 | 1 | 284 | 56711853 | 56711571 | 1.220000e-64 | 257.0 |
28 | TraesCS5D01G447600 | chr1D | 81.231 | 325 | 45 | 15 | 1 | 317 | 40799702 | 40800018 | 7.320000e-62 | 248.0 |
29 | TraesCS5D01G447600 | chr4B | 78.899 | 327 | 41 | 20 | 1 | 309 | 546275684 | 546276000 | 2.690000e-46 | 196.0 |
30 | TraesCS5D01G447600 | chr3D | 81.865 | 193 | 20 | 11 | 1 | 183 | 432543930 | 432543743 | 7.640000e-32 | 148.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G447600 | chr5D | 497819250 | 497822667 | 3417 | False | 6312.0 | 6312 | 100.000000 | 1 | 3418 | 1 | chr5D.!!$F4 | 3417 |
1 | TraesCS5D01G447600 | chr5D | 423533954 | 423535354 | 1400 | True | 699.0 | 699 | 76.395000 | 1022 | 2459 | 1 | chr5D.!!$R1 | 1437 |
2 | TraesCS5D01G447600 | chr5D | 47531058 | 47532587 | 1529 | False | 669.0 | 669 | 75.398000 | 1065 | 2574 | 1 | chr5D.!!$F1 | 1509 |
3 | TraesCS5D01G447600 | chr5A | 621846455 | 621849672 | 3217 | False | 1989.5 | 3788 | 86.957500 | 1 | 3394 | 2 | chr5A.!!$F3 | 3393 |
4 | TraesCS5D01G447600 | chr5A | 37935201 | 37936647 | 1446 | False | 662.0 | 662 | 75.876000 | 1161 | 2577 | 1 | chr5A.!!$F1 | 1416 |
5 | TraesCS5D01G447600 | chr5A | 537123598 | 537125123 | 1525 | True | 640.0 | 640 | 75.093000 | 875 | 2459 | 1 | chr5A.!!$R1 | 1584 |
6 | TraesCS5D01G447600 | chr5B | 616956212 | 616959692 | 3480 | False | 834.0 | 1424 | 90.406667 | 421 | 2956 | 3 | chr5B.!!$F1 | 2535 |
7 | TraesCS5D01G447600 | chr6A | 17946102 | 17947374 | 1272 | True | 769.0 | 769 | 78.201000 | 1070 | 2345 | 1 | chr6A.!!$R1 | 1275 |
8 | TraesCS5D01G447600 | chr3A | 696346753 | 696348378 | 1625 | True | 610.0 | 610 | 74.529000 | 936 | 2567 | 1 | chr3A.!!$R1 | 1631 |
9 | TraesCS5D01G447600 | chr6B | 30340882 | 30341692 | 810 | True | 584.0 | 584 | 80.095000 | 1523 | 2345 | 1 | chr6B.!!$R1 | 822 |
10 | TraesCS5D01G447600 | chr1B | 630820226 | 630821586 | 1360 | False | 544.0 | 544 | 74.734000 | 1167 | 2529 | 1 | chr1B.!!$F1 | 1362 |
11 | TraesCS5D01G447600 | chr7B | 661719098 | 661724546 | 5448 | True | 398.5 | 527 | 77.006500 | 1015 | 2519 | 2 | chr7B.!!$R2 | 1504 |
12 | TraesCS5D01G447600 | chr7B | 620678204 | 620679108 | 904 | True | 326.0 | 326 | 73.696000 | 1065 | 1963 | 1 | chr7B.!!$R1 | 898 |
13 | TraesCS5D01G447600 | chr7D | 602291535 | 602292627 | 1092 | False | 442.0 | 442 | 74.780000 | 746 | 1847 | 1 | chr7D.!!$F1 | 1101 |
14 | TraesCS5D01G447600 | chrUn | 87219811 | 87220601 | 790 | False | 438.0 | 438 | 77.171000 | 1064 | 1850 | 1 | chrUn.!!$F1 | 786 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
288 | 290 | 0.108756 | GGTACTGTTCGTCCAGGAGC | 60.109 | 60.0 | 0.00 | 6.04 | 36.69 | 4.70 | F |
294 | 296 | 0.169009 | GTTCGTCCAGGAGCAAATGC | 59.831 | 55.0 | 0.00 | 0.00 | 42.49 | 3.56 | F |
343 | 345 | 0.325933 | ATCTGCAGCTAACCAGTGCA | 59.674 | 50.0 | 9.47 | 0.00 | 44.80 | 4.57 | F |
344 | 346 | 0.325933 | TCTGCAGCTAACCAGTGCAT | 59.674 | 50.0 | 9.47 | 0.00 | 45.77 | 3.96 | F |
720 | 1864 | 0.470268 | ACCCTAGCTAGCTGTAGGCC | 60.470 | 60.0 | 27.68 | 0.00 | 43.05 | 5.19 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2060 | 7624 | 0.103208 | CCACCGAGCTCACACCTATC | 59.897 | 60.000 | 15.40 | 0.0 | 0.0 | 2.08 | R |
2108 | 7672 | 4.002982 | CCTCTTTCAATCCACGACAATGA | 58.997 | 43.478 | 0.00 | 0.0 | 0.0 | 2.57 | R |
2310 | 7880 | 2.965831 | AGCTTAGTGTCACTTGAGGTCA | 59.034 | 45.455 | 11.54 | 0.0 | 0.0 | 4.02 | R |
2357 | 7937 | 4.442706 | CAAAACACACACAGAGACTACCT | 58.557 | 43.478 | 0.00 | 0.0 | 0.0 | 3.08 | R |
2475 | 8074 | 2.991190 | GTTGATGCTTGCACCTGAATTG | 59.009 | 45.455 | 0.00 | 0.0 | 0.0 | 2.32 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
73 | 75 | 8.519526 | CATCCAAATACTACCTGCAAAGTTTTA | 58.480 | 33.333 | 1.78 | 0.00 | 0.00 | 1.52 |
80 | 82 | 4.479786 | ACCTGCAAAGTTTTAGGCAAAA | 57.520 | 36.364 | 13.25 | 0.00 | 35.59 | 2.44 |
143 | 145 | 7.368198 | ACACCAAATGTTACCCTAAATTTGT | 57.632 | 32.000 | 0.00 | 0.00 | 38.98 | 2.83 |
167 | 169 | 4.566545 | TTTCACCGACGAAACACTACTA | 57.433 | 40.909 | 0.00 | 0.00 | 30.00 | 1.82 |
169 | 171 | 2.226437 | TCACCGACGAAACACTACTACC | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
179 | 181 | 2.601905 | ACACTACTACCCCGTTTCACT | 58.398 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
217 | 219 | 5.616866 | GCATAGTTGCGACACTAACACAAAT | 60.617 | 40.000 | 6.90 | 0.00 | 39.49 | 2.32 |
225 | 227 | 5.670341 | GCGACACTAACACAAATATCCACAC | 60.670 | 44.000 | 0.00 | 0.00 | 0.00 | 3.82 |
226 | 228 | 5.407084 | CGACACTAACACAAATATCCACACA | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
227 | 229 | 6.073494 | CGACACTAACACAAATATCCACACAA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
228 | 230 | 7.519168 | CGACACTAACACAAATATCCACACAAA | 60.519 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
229 | 231 | 8.001881 | ACACTAACACAAATATCCACACAAAA | 57.998 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
230 | 232 | 8.470805 | ACACTAACACAAATATCCACACAAAAA | 58.529 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
234 | 236 | 8.954950 | AACACAAATATCCACACAAAAATTCA | 57.045 | 26.923 | 0.00 | 0.00 | 0.00 | 2.57 |
235 | 237 | 8.592105 | ACACAAATATCCACACAAAAATTCAG | 57.408 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
236 | 238 | 8.420222 | ACACAAATATCCACACAAAAATTCAGA | 58.580 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
237 | 239 | 9.258826 | CACAAATATCCACACAAAAATTCAGAA | 57.741 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
288 | 290 | 0.108756 | GGTACTGTTCGTCCAGGAGC | 60.109 | 60.000 | 0.00 | 6.04 | 36.69 | 4.70 |
294 | 296 | 0.169009 | GTTCGTCCAGGAGCAAATGC | 59.831 | 55.000 | 0.00 | 0.00 | 42.49 | 3.56 |
313 | 315 | 3.373565 | CCCAGAGCCAAAACGCCC | 61.374 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
317 | 319 | 2.034221 | GAGCCAAAACGCCCCTCT | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
319 | 321 | 3.431725 | GCCAAAACGCCCCTCTCG | 61.432 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
340 | 342 | 0.617413 | AGCATCTGCAGCTAACCAGT | 59.383 | 50.000 | 9.47 | 0.00 | 45.16 | 4.00 |
341 | 343 | 0.731417 | GCATCTGCAGCTAACCAGTG | 59.269 | 55.000 | 9.47 | 0.00 | 41.59 | 3.66 |
342 | 344 | 0.731417 | CATCTGCAGCTAACCAGTGC | 59.269 | 55.000 | 9.47 | 0.00 | 37.73 | 4.40 |
343 | 345 | 0.325933 | ATCTGCAGCTAACCAGTGCA | 59.674 | 50.000 | 9.47 | 0.00 | 44.80 | 4.57 |
344 | 346 | 0.325933 | TCTGCAGCTAACCAGTGCAT | 59.674 | 50.000 | 9.47 | 0.00 | 45.77 | 3.96 |
353 | 356 | 3.369471 | GCTAACCAGTGCATAGAGACCAA | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
385 | 388 | 3.994392 | GAGTGGCTCTTAACATGTCGAAA | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
386 | 389 | 4.385825 | AGTGGCTCTTAACATGTCGAAAA | 58.614 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
450 | 453 | 6.016777 | ACAGATGCAGAAAGTTTTAACCTCAG | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
504 | 507 | 2.708216 | TCAGTCAAGTGCTGTTTGGA | 57.292 | 45.000 | 0.00 | 0.00 | 35.60 | 3.53 |
594 | 1734 | 7.432350 | TTTGTTGTTGTTGAAAATTCAGCTT | 57.568 | 28.000 | 10.64 | 0.00 | 38.92 | 3.74 |
693 | 1837 | 2.095466 | ACGTGGTGAGTTGTTGTTGTTG | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
694 | 1838 | 2.095466 | CGTGGTGAGTTGTTGTTGTTGT | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
695 | 1839 | 3.610585 | CGTGGTGAGTTGTTGTTGTTGTT | 60.611 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
696 | 1840 | 4.378563 | CGTGGTGAGTTGTTGTTGTTGTTA | 60.379 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
697 | 1841 | 5.462405 | GTGGTGAGTTGTTGTTGTTGTTAA | 58.538 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
698 | 1842 | 5.343860 | GTGGTGAGTTGTTGTTGTTGTTAAC | 59.656 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
699 | 1843 | 4.860352 | GGTGAGTTGTTGTTGTTGTTAACC | 59.140 | 41.667 | 2.48 | 0.00 | 0.00 | 2.85 |
717 | 1861 | 2.389715 | ACCAACCCTAGCTAGCTGTAG | 58.610 | 52.381 | 27.68 | 17.00 | 0.00 | 2.74 |
718 | 1862 | 1.689273 | CCAACCCTAGCTAGCTGTAGG | 59.311 | 57.143 | 27.68 | 24.57 | 36.33 | 3.18 |
719 | 1863 | 1.069358 | CAACCCTAGCTAGCTGTAGGC | 59.931 | 57.143 | 27.68 | 0.00 | 35.37 | 3.93 |
720 | 1864 | 0.470268 | ACCCTAGCTAGCTGTAGGCC | 60.470 | 60.000 | 27.68 | 0.00 | 43.05 | 5.19 |
823 | 2277 | 4.980805 | TCTTGCGGCGGCGACTTT | 62.981 | 61.111 | 36.87 | 0.00 | 44.10 | 2.66 |
1370 | 2889 | 1.374343 | CCGATGTCGACGAGGAGGAA | 61.374 | 60.000 | 15.86 | 0.00 | 43.02 | 3.36 |
1553 | 3075 | 6.826231 | TGATATGTGATTGTTTTACCATCCGT | 59.174 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
1653 | 3211 | 7.502120 | TTTAGCAATCTCCTTGATGATAAGC | 57.498 | 36.000 | 0.00 | 0.00 | 36.97 | 3.09 |
1754 | 3312 | 0.550914 | TCAGGGCACAACTCTTTGGT | 59.449 | 50.000 | 0.00 | 0.00 | 37.00 | 3.67 |
1925 | 7420 | 4.090761 | TGAGGAACAAGAACAAGCAGAT | 57.909 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2060 | 7624 | 1.327764 | GAAAAGCGGTTATCTGAGCGG | 59.672 | 52.381 | 0.00 | 0.00 | 40.59 | 5.52 |
2108 | 7672 | 2.765135 | TCTTGCTCTAGCTGAGAAGCAT | 59.235 | 45.455 | 14.86 | 0.00 | 45.39 | 3.79 |
2280 | 7847 | 2.092968 | TCAAGGCGGAAGTAATGCTCAT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2310 | 7880 | 9.273016 | GCATATATATGGTACGCATATTCCTTT | 57.727 | 33.333 | 21.50 | 2.18 | 34.32 | 3.11 |
2357 | 7937 | 7.066142 | GCATATATGGGATCCTCTAGAGAGAA | 58.934 | 42.308 | 21.76 | 6.62 | 44.74 | 2.87 |
2366 | 7946 | 5.881923 | TCCTCTAGAGAGAAGGTAGTCTC | 57.118 | 47.826 | 21.76 | 0.00 | 44.74 | 3.36 |
2579 | 8184 | 5.247862 | TCTGTGCATTGATTGTGTCATACT | 58.752 | 37.500 | 0.00 | 0.00 | 36.54 | 2.12 |
2662 | 8270 | 0.911769 | TGGTCTGGGTTAGCCATGAG | 59.088 | 55.000 | 2.75 | 0.00 | 36.17 | 2.90 |
2774 | 8382 | 4.100707 | CATGAGCATCGTTTTCATGGTT | 57.899 | 40.909 | 5.93 | 0.00 | 42.69 | 3.67 |
2822 | 8431 | 2.105766 | GGGAAGCAAAGCAATGGAGAT | 58.894 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
2843 | 8453 | 1.065782 | ACGTGCATGCACTAATACCCA | 60.066 | 47.619 | 39.46 | 6.09 | 44.16 | 4.51 |
2899 | 8509 | 3.645268 | CTGGGGCAGGGGTGTAAGC | 62.645 | 68.421 | 0.00 | 0.00 | 0.00 | 3.09 |
2901 | 8511 | 4.796495 | GGGCAGGGGTGTAAGCGG | 62.796 | 72.222 | 0.00 | 0.00 | 33.03 | 5.52 |
2922 | 8532 | 2.447250 | CGCGCTTCGTAGTTAATCTCA | 58.553 | 47.619 | 5.56 | 0.00 | 0.00 | 3.27 |
2923 | 8533 | 2.850060 | CGCGCTTCGTAGTTAATCTCAA | 59.150 | 45.455 | 5.56 | 0.00 | 0.00 | 3.02 |
2956 | 8566 | 2.895404 | TCTAGCTTGAGTTACACGGGTT | 59.105 | 45.455 | 0.00 | 0.00 | 0.00 | 4.11 |
2957 | 8567 | 2.632987 | AGCTTGAGTTACACGGGTTT | 57.367 | 45.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2958 | 8568 | 2.218603 | AGCTTGAGTTACACGGGTTTG | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
2959 | 8569 | 1.944709 | GCTTGAGTTACACGGGTTTGT | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
2960 | 8570 | 2.356695 | GCTTGAGTTACACGGGTTTGTT | 59.643 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
2961 | 8571 | 3.790789 | GCTTGAGTTACACGGGTTTGTTG | 60.791 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
2962 | 8572 | 3.263489 | TGAGTTACACGGGTTTGTTGA | 57.737 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2963 | 8573 | 3.607741 | TGAGTTACACGGGTTTGTTGAA | 58.392 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2964 | 8574 | 3.623960 | TGAGTTACACGGGTTTGTTGAAG | 59.376 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2965 | 8575 | 3.613030 | AGTTACACGGGTTTGTTGAAGT | 58.387 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
2966 | 8576 | 4.011698 | AGTTACACGGGTTTGTTGAAGTT | 58.988 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2967 | 8577 | 2.931512 | ACACGGGTTTGTTGAAGTTG | 57.068 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2968 | 8578 | 1.135228 | ACACGGGTTTGTTGAAGTTGC | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
2969 | 8579 | 1.135257 | CACGGGTTTGTTGAAGTTGCA | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
2970 | 8580 | 1.135228 | ACGGGTTTGTTGAAGTTGCAC | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
2971 | 8581 | 1.134175 | CGGGTTTGTTGAAGTTGCACT | 59.866 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
2972 | 8582 | 2.356382 | CGGGTTTGTTGAAGTTGCACTA | 59.644 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2973 | 8583 | 3.548014 | CGGGTTTGTTGAAGTTGCACTAG | 60.548 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
2974 | 8584 | 3.380320 | GGGTTTGTTGAAGTTGCACTAGT | 59.620 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2975 | 8585 | 4.577283 | GGGTTTGTTGAAGTTGCACTAGTA | 59.423 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2976 | 8586 | 5.277828 | GGGTTTGTTGAAGTTGCACTAGTAG | 60.278 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2977 | 8587 | 5.277828 | GGTTTGTTGAAGTTGCACTAGTAGG | 60.278 | 44.000 | 1.45 | 0.00 | 0.00 | 3.18 |
2978 | 8588 | 3.399330 | TGTTGAAGTTGCACTAGTAGGC | 58.601 | 45.455 | 1.45 | 0.00 | 0.00 | 3.93 |
2979 | 8589 | 3.071023 | TGTTGAAGTTGCACTAGTAGGCT | 59.929 | 43.478 | 6.73 | 0.00 | 0.00 | 4.58 |
2980 | 8590 | 3.319137 | TGAAGTTGCACTAGTAGGCTG | 57.681 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
2981 | 8591 | 2.632996 | TGAAGTTGCACTAGTAGGCTGT | 59.367 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2982 | 8592 | 3.254892 | GAAGTTGCACTAGTAGGCTGTC | 58.745 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2983 | 8593 | 1.202582 | AGTTGCACTAGTAGGCTGTCG | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2984 | 8594 | 0.108804 | TTGCACTAGTAGGCTGTCGC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3010 | 8620 | 4.521062 | GACGCCGCTCTGCATCCT | 62.521 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
3011 | 8621 | 4.087892 | ACGCCGCTCTGCATCCTT | 62.088 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
3012 | 8622 | 2.106938 | CGCCGCTCTGCATCCTTA | 59.893 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
3013 | 8623 | 2.240500 | CGCCGCTCTGCATCCTTAC | 61.241 | 63.158 | 0.00 | 0.00 | 0.00 | 2.34 |
3014 | 8624 | 1.889573 | GCCGCTCTGCATCCTTACC | 60.890 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
3015 | 8625 | 1.227674 | CCGCTCTGCATCCTTACCC | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
3016 | 8626 | 1.690219 | CCGCTCTGCATCCTTACCCT | 61.690 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3017 | 8627 | 0.531532 | CGCTCTGCATCCTTACCCTG | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3018 | 8628 | 0.179034 | GCTCTGCATCCTTACCCTGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3019 | 8629 | 1.500474 | CTCTGCATCCTTACCCTGGA | 58.500 | 55.000 | 0.00 | 0.00 | 38.06 | 3.86 |
3020 | 8630 | 1.415659 | CTCTGCATCCTTACCCTGGAG | 59.584 | 57.143 | 0.00 | 0.00 | 36.99 | 3.86 |
3021 | 8631 | 0.471617 | CTGCATCCTTACCCTGGAGG | 59.528 | 60.000 | 0.00 | 0.00 | 43.78 | 4.30 |
3023 | 8633 | 2.620234 | CATCCTTACCCTGGAGGCA | 58.380 | 57.895 | 0.00 | 0.00 | 40.58 | 4.75 |
3024 | 8634 | 0.918983 | CATCCTTACCCTGGAGGCAA | 59.081 | 55.000 | 0.00 | 0.00 | 40.58 | 4.52 |
3025 | 8635 | 1.284785 | CATCCTTACCCTGGAGGCAAA | 59.715 | 52.381 | 0.00 | 0.00 | 40.58 | 3.68 |
3026 | 8636 | 1.451449 | TCCTTACCCTGGAGGCAAAA | 58.549 | 50.000 | 0.00 | 0.00 | 40.58 | 2.44 |
3027 | 8637 | 1.354368 | TCCTTACCCTGGAGGCAAAAG | 59.646 | 52.381 | 0.00 | 0.00 | 40.58 | 2.27 |
3028 | 8638 | 1.177401 | CTTACCCTGGAGGCAAAAGC | 58.823 | 55.000 | 0.00 | 0.00 | 40.58 | 3.51 |
3029 | 8639 | 0.777446 | TTACCCTGGAGGCAAAAGCT | 59.223 | 50.000 | 0.00 | 0.00 | 40.58 | 3.74 |
3030 | 8640 | 1.663911 | TACCCTGGAGGCAAAAGCTA | 58.336 | 50.000 | 0.00 | 0.00 | 40.58 | 3.32 |
3031 | 8641 | 0.329596 | ACCCTGGAGGCAAAAGCTAG | 59.670 | 55.000 | 0.00 | 0.00 | 40.58 | 3.42 |
3032 | 8642 | 1.034292 | CCCTGGAGGCAAAAGCTAGC | 61.034 | 60.000 | 6.62 | 6.62 | 0.00 | 3.42 |
3033 | 8643 | 0.322816 | CCTGGAGGCAAAAGCTAGCA | 60.323 | 55.000 | 18.83 | 0.00 | 0.00 | 3.49 |
3034 | 8644 | 1.093159 | CTGGAGGCAAAAGCTAGCAG | 58.907 | 55.000 | 18.83 | 4.81 | 0.00 | 4.24 |
3035 | 8645 | 0.692476 | TGGAGGCAAAAGCTAGCAGA | 59.308 | 50.000 | 18.83 | 0.00 | 0.00 | 4.26 |
3036 | 8646 | 1.073763 | TGGAGGCAAAAGCTAGCAGAA | 59.926 | 47.619 | 18.83 | 0.00 | 0.00 | 3.02 |
3037 | 8647 | 2.162681 | GGAGGCAAAAGCTAGCAGAAA | 58.837 | 47.619 | 18.83 | 0.00 | 0.00 | 2.52 |
3038 | 8648 | 2.558359 | GGAGGCAAAAGCTAGCAGAAAA | 59.442 | 45.455 | 18.83 | 0.00 | 0.00 | 2.29 |
3039 | 8649 | 3.194329 | GGAGGCAAAAGCTAGCAGAAAAT | 59.806 | 43.478 | 18.83 | 0.00 | 0.00 | 1.82 |
3040 | 8650 | 4.419280 | GAGGCAAAAGCTAGCAGAAAATC | 58.581 | 43.478 | 18.83 | 2.84 | 0.00 | 2.17 |
3041 | 8651 | 3.828451 | AGGCAAAAGCTAGCAGAAAATCA | 59.172 | 39.130 | 18.83 | 0.00 | 0.00 | 2.57 |
3042 | 8652 | 3.922850 | GGCAAAAGCTAGCAGAAAATCAC | 59.077 | 43.478 | 18.83 | 0.00 | 0.00 | 3.06 |
3043 | 8653 | 4.321527 | GGCAAAAGCTAGCAGAAAATCACT | 60.322 | 41.667 | 18.83 | 0.00 | 0.00 | 3.41 |
3044 | 8654 | 4.855937 | GCAAAAGCTAGCAGAAAATCACTC | 59.144 | 41.667 | 18.83 | 0.00 | 0.00 | 3.51 |
3045 | 8655 | 5.563475 | GCAAAAGCTAGCAGAAAATCACTCA | 60.563 | 40.000 | 18.83 | 0.00 | 0.00 | 3.41 |
3046 | 8656 | 5.619625 | AAAGCTAGCAGAAAATCACTCAC | 57.380 | 39.130 | 18.83 | 0.00 | 0.00 | 3.51 |
3047 | 8657 | 4.550076 | AGCTAGCAGAAAATCACTCACT | 57.450 | 40.909 | 18.83 | 0.00 | 0.00 | 3.41 |
3048 | 8658 | 4.252073 | AGCTAGCAGAAAATCACTCACTG | 58.748 | 43.478 | 18.83 | 0.00 | 0.00 | 3.66 |
3051 | 8661 | 3.198863 | GCAGAAAATCACTCACTGCTG | 57.801 | 47.619 | 0.00 | 0.00 | 46.66 | 4.41 |
3052 | 8662 | 2.095364 | GCAGAAAATCACTCACTGCTGG | 60.095 | 50.000 | 0.00 | 0.00 | 46.66 | 4.85 |
3053 | 8663 | 3.405831 | CAGAAAATCACTCACTGCTGGA | 58.594 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3054 | 8664 | 3.817084 | CAGAAAATCACTCACTGCTGGAA | 59.183 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
3055 | 8665 | 3.817647 | AGAAAATCACTCACTGCTGGAAC | 59.182 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
3056 | 8666 | 3.498774 | AAATCACTCACTGCTGGAACT | 57.501 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
3057 | 8667 | 2.469274 | ATCACTCACTGCTGGAACTG | 57.531 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3058 | 8668 | 0.394192 | TCACTCACTGCTGGAACTGG | 59.606 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3059 | 8669 | 0.107456 | CACTCACTGCTGGAACTGGT | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3060 | 8670 | 0.394565 | ACTCACTGCTGGAACTGGTC | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3069 | 8679 | 3.633361 | GGAACTGGTCCTGGTGAAG | 57.367 | 57.895 | 3.98 | 0.00 | 43.98 | 3.02 |
3070 | 8680 | 1.056660 | GGAACTGGTCCTGGTGAAGA | 58.943 | 55.000 | 3.98 | 0.00 | 43.98 | 2.87 |
3071 | 8681 | 1.420138 | GGAACTGGTCCTGGTGAAGAA | 59.580 | 52.381 | 3.98 | 0.00 | 43.98 | 2.52 |
3072 | 8682 | 2.158667 | GGAACTGGTCCTGGTGAAGAAA | 60.159 | 50.000 | 3.98 | 0.00 | 43.98 | 2.52 |
3073 | 8683 | 3.551846 | GAACTGGTCCTGGTGAAGAAAA | 58.448 | 45.455 | 0.33 | 0.00 | 0.00 | 2.29 |
3074 | 8684 | 3.214696 | ACTGGTCCTGGTGAAGAAAAG | 57.785 | 47.619 | 0.33 | 0.00 | 0.00 | 2.27 |
3075 | 8685 | 2.777692 | ACTGGTCCTGGTGAAGAAAAGA | 59.222 | 45.455 | 0.33 | 0.00 | 0.00 | 2.52 |
3076 | 8686 | 3.202151 | ACTGGTCCTGGTGAAGAAAAGAA | 59.798 | 43.478 | 0.33 | 0.00 | 0.00 | 2.52 |
3077 | 8687 | 4.207165 | CTGGTCCTGGTGAAGAAAAGAAA | 58.793 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3078 | 8688 | 3.951680 | TGGTCCTGGTGAAGAAAAGAAAC | 59.048 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
3079 | 8689 | 3.003378 | GGTCCTGGTGAAGAAAAGAAACG | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 3.60 |
3080 | 8690 | 3.875134 | GTCCTGGTGAAGAAAAGAAACGA | 59.125 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3081 | 8691 | 4.024809 | GTCCTGGTGAAGAAAAGAAACGAG | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
3082 | 8692 | 3.251004 | CCTGGTGAAGAAAAGAAACGAGG | 59.749 | 47.826 | 0.00 | 0.00 | 31.68 | 4.63 |
3097 | 8707 | 1.379642 | CGAGGAGAATTGCTTGGGGC | 61.380 | 60.000 | 0.00 | 0.00 | 42.22 | 5.80 |
3113 | 8723 | 2.183555 | GCTGCTTGGCCTGAATGC | 59.816 | 61.111 | 3.32 | 0.00 | 0.00 | 3.56 |
3151 | 8761 | 1.662044 | CTCAAGGCCAAACACCAGC | 59.338 | 57.895 | 5.01 | 0.00 | 0.00 | 4.85 |
3167 | 8777 | 1.517242 | CAGCTGGTTCTGAAGACCAC | 58.483 | 55.000 | 5.57 | 0.00 | 36.19 | 4.16 |
3169 | 8779 | 1.202698 | AGCTGGTTCTGAAGACCACAC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
3172 | 8782 | 1.837439 | TGGTTCTGAAGACCACACACT | 59.163 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
3196 | 8842 | 9.032624 | ACTAACTGGAAAATGCTTCTAGTACTA | 57.967 | 33.333 | 1.89 | 1.89 | 38.95 | 1.82 |
3220 | 8866 | 9.712305 | CTATTATCTGTGTCTTATTCCGGAAAT | 57.288 | 33.333 | 23.08 | 12.31 | 0.00 | 2.17 |
3226 | 8872 | 6.851609 | TGTGTCTTATTCCGGAAATGAATTG | 58.148 | 36.000 | 23.08 | 7.57 | 34.43 | 2.32 |
3230 | 8876 | 8.044309 | TGTCTTATTCCGGAAATGAATTGTAGA | 58.956 | 33.333 | 23.08 | 10.03 | 34.43 | 2.59 |
3232 | 8878 | 9.056005 | TCTTATTCCGGAAATGAATTGTAGATG | 57.944 | 33.333 | 23.08 | 2.20 | 34.43 | 2.90 |
3233 | 8879 | 5.499139 | TTCCGGAAATGAATTGTAGATGC | 57.501 | 39.130 | 16.28 | 0.00 | 0.00 | 3.91 |
3238 | 8884 | 5.527214 | CGGAAATGAATTGTAGATGCTGGTA | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3241 | 8887 | 8.416329 | GGAAATGAATTGTAGATGCTGGTAAAT | 58.584 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3242 | 8888 | 9.807649 | GAAATGAATTGTAGATGCTGGTAAATT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3270 | 8917 | 3.939592 | TCACCACGTGTGTTAATTTCACA | 59.060 | 39.130 | 15.65 | 10.65 | 45.61 | 3.58 |
3303 | 8958 | 8.191446 | GCTATATGTATGTATGTACTGACCCAG | 58.809 | 40.741 | 0.00 | 0.00 | 37.52 | 4.45 |
3305 | 8960 | 6.808321 | ATGTATGTATGTACTGACCCAGTT | 57.192 | 37.500 | 4.85 | 0.00 | 42.59 | 3.16 |
3306 | 8961 | 5.972935 | TGTATGTATGTACTGACCCAGTTG | 58.027 | 41.667 | 4.85 | 0.00 | 42.59 | 3.16 |
3307 | 8962 | 5.717654 | TGTATGTATGTACTGACCCAGTTGA | 59.282 | 40.000 | 4.85 | 0.00 | 42.59 | 3.18 |
3308 | 8963 | 5.755409 | ATGTATGTACTGACCCAGTTGAA | 57.245 | 39.130 | 4.85 | 0.00 | 42.59 | 2.69 |
3309 | 8964 | 5.554437 | TGTATGTACTGACCCAGTTGAAA | 57.446 | 39.130 | 4.85 | 0.00 | 42.59 | 2.69 |
3310 | 8965 | 5.547465 | TGTATGTACTGACCCAGTTGAAAG | 58.453 | 41.667 | 4.85 | 0.00 | 42.59 | 2.62 |
3311 | 8966 | 4.706842 | ATGTACTGACCCAGTTGAAAGT | 57.293 | 40.909 | 4.85 | 0.00 | 42.59 | 2.66 |
3312 | 8967 | 5.818678 | ATGTACTGACCCAGTTGAAAGTA | 57.181 | 39.130 | 4.85 | 0.00 | 42.59 | 2.24 |
3313 | 8968 | 5.209818 | TGTACTGACCCAGTTGAAAGTAG | 57.790 | 43.478 | 4.85 | 0.00 | 42.59 | 2.57 |
3314 | 8969 | 4.652421 | TGTACTGACCCAGTTGAAAGTAGT | 59.348 | 41.667 | 4.85 | 0.00 | 42.59 | 2.73 |
3315 | 8970 | 4.338379 | ACTGACCCAGTTGAAAGTAGTC | 57.662 | 45.455 | 0.00 | 0.00 | 42.59 | 2.59 |
3316 | 8971 | 3.709653 | ACTGACCCAGTTGAAAGTAGTCA | 59.290 | 43.478 | 0.00 | 0.00 | 42.59 | 3.41 |
3317 | 8972 | 4.163458 | ACTGACCCAGTTGAAAGTAGTCAA | 59.837 | 41.667 | 0.00 | 0.00 | 42.59 | 3.18 |
3318 | 8973 | 5.105567 | TGACCCAGTTGAAAGTAGTCAAA | 57.894 | 39.130 | 0.00 | 0.00 | 39.18 | 2.69 |
3349 | 9004 | 7.985184 | GGTGTTAAAACCATTCTTTTCTTCCTT | 59.015 | 33.333 | 10.17 | 0.00 | 40.22 | 3.36 |
3359 | 9014 | 7.381408 | CCATTCTTTTCTTCCTTTTCCGTTTAC | 59.619 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
3365 | 9020 | 5.001232 | TCTTCCTTTTCCGTTTACCTCATG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
3370 | 9025 | 5.183140 | CCTTTTCCGTTTACCTCATGTCAAT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3371 | 9026 | 6.294508 | CCTTTTCCGTTTACCTCATGTCAATT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
3372 | 9027 | 5.621197 | TTCCGTTTACCTCATGTCAATTG | 57.379 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
3373 | 9028 | 4.900684 | TCCGTTTACCTCATGTCAATTGA | 58.099 | 39.130 | 3.38 | 3.38 | 0.00 | 2.57 |
3374 | 9029 | 5.309638 | TCCGTTTACCTCATGTCAATTGAA | 58.690 | 37.500 | 10.35 | 1.23 | 0.00 | 2.69 |
3375 | 9030 | 5.180492 | TCCGTTTACCTCATGTCAATTGAAC | 59.820 | 40.000 | 10.35 | 5.46 | 0.00 | 3.18 |
3376 | 9031 | 5.079406 | CGTTTACCTCATGTCAATTGAACG | 58.921 | 41.667 | 10.35 | 8.54 | 0.00 | 3.95 |
3377 | 9032 | 4.678509 | TTACCTCATGTCAATTGAACGC | 57.321 | 40.909 | 10.35 | 0.00 | 0.00 | 4.84 |
3378 | 9033 | 2.503331 | ACCTCATGTCAATTGAACGCA | 58.497 | 42.857 | 10.35 | 4.62 | 0.00 | 5.24 |
3379 | 9034 | 2.884012 | ACCTCATGTCAATTGAACGCAA | 59.116 | 40.909 | 10.35 | 0.00 | 38.60 | 4.85 |
3380 | 9035 | 3.058016 | ACCTCATGTCAATTGAACGCAAG | 60.058 | 43.478 | 10.35 | 1.65 | 37.45 | 4.01 |
3394 | 9049 | 0.942962 | CGCAAGGAGATGAAGATGGC | 59.057 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3395 | 9050 | 1.744798 | CGCAAGGAGATGAAGATGGCA | 60.745 | 52.381 | 0.00 | 0.00 | 0.00 | 4.92 |
3396 | 9051 | 1.948145 | GCAAGGAGATGAAGATGGCAG | 59.052 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
3397 | 9052 | 2.421107 | GCAAGGAGATGAAGATGGCAGA | 60.421 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3398 | 9053 | 3.468770 | CAAGGAGATGAAGATGGCAGAG | 58.531 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3399 | 9054 | 1.417145 | AGGAGATGAAGATGGCAGAGC | 59.583 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
3400 | 9055 | 1.500108 | GAGATGAAGATGGCAGAGCG | 58.500 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3401 | 9056 | 0.532417 | AGATGAAGATGGCAGAGCGC | 60.532 | 55.000 | 0.00 | 0.00 | 41.28 | 5.92 |
3402 | 9057 | 1.829349 | GATGAAGATGGCAGAGCGCG | 61.829 | 60.000 | 0.00 | 0.00 | 43.84 | 6.86 |
3403 | 9058 | 2.510238 | GAAGATGGCAGAGCGCGT | 60.510 | 61.111 | 8.43 | 0.00 | 43.84 | 6.01 |
3404 | 9059 | 2.806856 | GAAGATGGCAGAGCGCGTG | 61.807 | 63.158 | 8.43 | 4.89 | 43.84 | 5.34 |
3405 | 9060 | 4.827087 | AGATGGCAGAGCGCGTGG | 62.827 | 66.667 | 8.43 | 3.14 | 43.84 | 4.94 |
3406 | 9061 | 4.819761 | GATGGCAGAGCGCGTGGA | 62.820 | 66.667 | 8.43 | 0.00 | 43.84 | 4.02 |
3411 | 9066 | 3.250323 | CAGAGCGCGTGGACGATG | 61.250 | 66.667 | 8.43 | 0.00 | 43.02 | 3.84 |
3417 | 9072 | 3.700961 | GCGTGGACGATGCGTATT | 58.299 | 55.556 | 2.73 | 0.00 | 41.37 | 1.89 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 58 | 3.827722 | TGCCTAAAACTTTGCAGGTAGT | 58.172 | 40.909 | 0.00 | 0.00 | 0.00 | 2.73 |
60 | 62 | 5.296531 | ACATTTTTGCCTAAAACTTTGCAGG | 59.703 | 36.000 | 0.00 | 0.00 | 38.48 | 4.85 |
121 | 123 | 9.688091 | AAAAACAAATTTAGGGTAACATTTGGT | 57.312 | 25.926 | 6.32 | 0.00 | 39.79 | 3.67 |
162 | 164 | 3.947910 | TCAAGTGAAACGGGGTAGTAG | 57.052 | 47.619 | 0.00 | 0.00 | 45.86 | 2.57 |
167 | 169 | 3.449377 | ACAATTTTCAAGTGAAACGGGGT | 59.551 | 39.130 | 5.98 | 1.03 | 45.86 | 4.95 |
169 | 171 | 4.677584 | TGACAATTTTCAAGTGAAACGGG | 58.322 | 39.130 | 5.98 | 2.04 | 45.86 | 5.28 |
197 | 199 | 5.121768 | GGATATTTGTGTTAGTGTCGCAACT | 59.878 | 40.000 | 0.00 | 0.00 | 35.50 | 3.16 |
198 | 200 | 5.106869 | TGGATATTTGTGTTAGTGTCGCAAC | 60.107 | 40.000 | 0.00 | 0.00 | 35.50 | 4.17 |
203 | 205 | 6.795098 | TGTGTGGATATTTGTGTTAGTGTC | 57.205 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
210 | 212 | 8.420222 | TCTGAATTTTTGTGTGGATATTTGTGT | 58.580 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
264 | 266 | 0.104487 | TGGACGAACAGTACCGCAAA | 59.896 | 50.000 | 0.00 | 0.00 | 30.72 | 3.68 |
265 | 267 | 0.319211 | CTGGACGAACAGTACCGCAA | 60.319 | 55.000 | 0.00 | 0.00 | 33.81 | 4.85 |
266 | 268 | 1.287815 | CTGGACGAACAGTACCGCA | 59.712 | 57.895 | 0.00 | 0.00 | 33.81 | 5.69 |
267 | 269 | 1.445582 | CCTGGACGAACAGTACCGC | 60.446 | 63.158 | 9.53 | 0.00 | 36.75 | 5.68 |
268 | 270 | 0.170561 | CTCCTGGACGAACAGTACCG | 59.829 | 60.000 | 0.00 | 0.00 | 36.75 | 4.02 |
269 | 271 | 0.108756 | GCTCCTGGACGAACAGTACC | 60.109 | 60.000 | 0.00 | 0.00 | 36.75 | 3.34 |
270 | 272 | 0.601558 | TGCTCCTGGACGAACAGTAC | 59.398 | 55.000 | 0.00 | 0.00 | 36.75 | 2.73 |
271 | 273 | 1.334160 | TTGCTCCTGGACGAACAGTA | 58.666 | 50.000 | 0.00 | 0.00 | 36.75 | 2.74 |
272 | 274 | 0.468226 | TTTGCTCCTGGACGAACAGT | 59.532 | 50.000 | 0.00 | 0.00 | 36.75 | 3.55 |
273 | 275 | 1.466167 | CATTTGCTCCTGGACGAACAG | 59.534 | 52.381 | 0.00 | 0.00 | 38.21 | 3.16 |
274 | 276 | 1.522668 | CATTTGCTCCTGGACGAACA | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
275 | 277 | 0.169009 | GCATTTGCTCCTGGACGAAC | 59.831 | 55.000 | 0.00 | 0.00 | 38.21 | 3.95 |
276 | 278 | 2.555123 | GCATTTGCTCCTGGACGAA | 58.445 | 52.632 | 0.00 | 0.00 | 38.21 | 3.85 |
277 | 279 | 4.301505 | GCATTTGCTCCTGGACGA | 57.698 | 55.556 | 0.00 | 0.00 | 38.21 | 4.20 |
294 | 296 | 2.335712 | GGCGTTTTGGCTCTGGGAG | 61.336 | 63.158 | 0.00 | 0.00 | 40.72 | 4.30 |
313 | 315 | 0.597118 | GCTGCAGATGCTACGAGAGG | 60.597 | 60.000 | 20.43 | 0.00 | 42.66 | 3.69 |
317 | 319 | 1.202417 | GGTTAGCTGCAGATGCTACGA | 60.202 | 52.381 | 20.43 | 0.00 | 41.95 | 3.43 |
319 | 321 | 2.208431 | CTGGTTAGCTGCAGATGCTAC | 58.792 | 52.381 | 20.43 | 11.32 | 41.95 | 3.58 |
340 | 342 | 1.570813 | CGCGATTTGGTCTCTATGCA | 58.429 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
341 | 343 | 0.233332 | GCGCGATTTGGTCTCTATGC | 59.767 | 55.000 | 12.10 | 0.00 | 0.00 | 3.14 |
342 | 344 | 0.861837 | GGCGCGATTTGGTCTCTATG | 59.138 | 55.000 | 12.10 | 0.00 | 0.00 | 2.23 |
343 | 345 | 0.249911 | GGGCGCGATTTGGTCTCTAT | 60.250 | 55.000 | 12.10 | 0.00 | 0.00 | 1.98 |
344 | 346 | 1.143183 | GGGCGCGATTTGGTCTCTA | 59.857 | 57.895 | 12.10 | 0.00 | 0.00 | 2.43 |
391 | 394 | 1.676006 | CAGGGTTGTTCTTTGCGTTCT | 59.324 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
398 | 401 | 8.528044 | TTTACATAAACTCAGGGTTGTTCTTT | 57.472 | 30.769 | 0.00 | 0.00 | 38.29 | 2.52 |
572 | 809 | 6.162079 | TCAAGCTGAATTTTCAACAACAACA | 58.838 | 32.000 | 0.00 | 0.00 | 36.64 | 3.33 |
576 | 813 | 8.816144 | TGTAAATCAAGCTGAATTTTCAACAAC | 58.184 | 29.630 | 10.77 | 4.51 | 36.64 | 3.32 |
579 | 816 | 8.482429 | CAGTGTAAATCAAGCTGAATTTTCAAC | 58.518 | 33.333 | 10.77 | 5.60 | 36.64 | 3.18 |
693 | 1837 | 3.055312 | ACAGCTAGCTAGGGTTGGTTAAC | 60.055 | 47.826 | 18.86 | 0.00 | 36.04 | 2.01 |
694 | 1838 | 3.178865 | ACAGCTAGCTAGGGTTGGTTAA | 58.821 | 45.455 | 18.86 | 0.00 | 0.00 | 2.01 |
695 | 1839 | 2.829023 | ACAGCTAGCTAGGGTTGGTTA | 58.171 | 47.619 | 18.86 | 0.00 | 0.00 | 2.85 |
696 | 1840 | 1.657804 | ACAGCTAGCTAGGGTTGGTT | 58.342 | 50.000 | 18.86 | 0.00 | 0.00 | 3.67 |
697 | 1841 | 2.389715 | CTACAGCTAGCTAGGGTTGGT | 58.610 | 52.381 | 18.86 | 11.77 | 0.00 | 3.67 |
698 | 1842 | 1.689273 | CCTACAGCTAGCTAGGGTTGG | 59.311 | 57.143 | 21.60 | 18.66 | 0.00 | 3.77 |
699 | 1843 | 1.069358 | GCCTACAGCTAGCTAGGGTTG | 59.931 | 57.143 | 27.54 | 17.84 | 38.99 | 3.77 |
1370 | 2889 | 3.199946 | TGAAACTGAACTTCACCTCCACT | 59.800 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1504 | 3026 | 2.360475 | GGGACTGCTCAAGGGTGC | 60.360 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
1553 | 3075 | 0.957362 | TGCAAACCATGATGTCGCAA | 59.043 | 45.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1653 | 3211 | 0.892755 | AATGCCACATCAGCACCAAG | 59.107 | 50.000 | 0.00 | 0.00 | 44.40 | 3.61 |
1754 | 3312 | 1.229951 | AGTGCCCTCCTTCATGGGA | 60.230 | 57.895 | 1.75 | 0.00 | 46.15 | 4.37 |
1925 | 7420 | 5.180680 | CACAGCTTCTGACATTTCATCTTCA | 59.819 | 40.000 | 0.29 | 0.00 | 35.18 | 3.02 |
2060 | 7624 | 0.103208 | CCACCGAGCTCACACCTATC | 59.897 | 60.000 | 15.40 | 0.00 | 0.00 | 2.08 |
2108 | 7672 | 4.002982 | CCTCTTTCAATCCACGACAATGA | 58.997 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2280 | 7847 | 9.476202 | GAATATGCGTACCATATATATGCAGAA | 57.524 | 33.333 | 16.08 | 5.17 | 45.28 | 3.02 |
2310 | 7880 | 2.965831 | AGCTTAGTGTCACTTGAGGTCA | 59.034 | 45.455 | 11.54 | 0.00 | 0.00 | 4.02 |
2357 | 7937 | 4.442706 | CAAAACACACACAGAGACTACCT | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
2366 | 7946 | 4.737054 | AGAGAAAAGCAAAACACACACAG | 58.263 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
2408 | 7992 | 6.126968 | TGGATTCTTCAGATTCAGCATACAGA | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2459 | 8052 | 9.347240 | CACCTGAATTGATAAACTATCCATTCT | 57.653 | 33.333 | 15.79 | 1.34 | 42.91 | 2.40 |
2475 | 8074 | 2.991190 | GTTGATGCTTGCACCTGAATTG | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2579 | 8184 | 6.699642 | GGCTACTAGAAAAACAACAAATGCAA | 59.300 | 34.615 | 0.00 | 0.00 | 0.00 | 4.08 |
2774 | 8382 | 5.947228 | AACAGAAGCAGATTTCGAAATCA | 57.053 | 34.783 | 38.54 | 11.72 | 45.59 | 2.57 |
2843 | 8453 | 1.938657 | CTCGTCACAGCATCTCCGGT | 61.939 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2899 | 8509 | 1.477030 | ATTAACTACGAAGCGCGCCG | 61.477 | 55.000 | 30.33 | 27.05 | 46.04 | 6.46 |
2901 | 8511 | 1.187487 | GAGATTAACTACGAAGCGCGC | 59.813 | 52.381 | 26.66 | 26.66 | 46.04 | 6.86 |
2923 | 8533 | 9.863845 | GTAACTCAAGCTAGAACTAATTTCTCT | 57.136 | 33.333 | 0.00 | 0.00 | 44.02 | 3.10 |
2948 | 8558 | 1.135228 | GCAACTTCAACAAACCCGTGT | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
2963 | 8573 | 4.600712 | GCGACAGCCTACTAGTGCAACT | 62.601 | 54.545 | 5.39 | 0.00 | 44.66 | 3.16 |
2964 | 8574 | 1.630148 | CGACAGCCTACTAGTGCAAC | 58.370 | 55.000 | 5.39 | 0.00 | 0.00 | 4.17 |
2965 | 8575 | 0.108804 | GCGACAGCCTACTAGTGCAA | 60.109 | 55.000 | 5.39 | 0.00 | 37.42 | 4.08 |
2966 | 8576 | 1.511305 | GCGACAGCCTACTAGTGCA | 59.489 | 57.895 | 5.39 | 0.00 | 37.42 | 4.57 |
2967 | 8577 | 4.403976 | GCGACAGCCTACTAGTGC | 57.596 | 61.111 | 5.39 | 0.66 | 37.42 | 4.40 |
2993 | 8603 | 2.629050 | TAAGGATGCAGAGCGGCGTC | 62.629 | 60.000 | 9.37 | 10.57 | 46.62 | 5.19 |
2994 | 8604 | 2.721167 | TAAGGATGCAGAGCGGCGT | 61.721 | 57.895 | 9.37 | 0.00 | 36.28 | 5.68 |
2995 | 8605 | 2.106938 | TAAGGATGCAGAGCGGCG | 59.893 | 61.111 | 0.51 | 0.51 | 36.28 | 6.46 |
2996 | 8606 | 1.889573 | GGTAAGGATGCAGAGCGGC | 60.890 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
2997 | 8607 | 1.227674 | GGGTAAGGATGCAGAGCGG | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
2998 | 8608 | 0.531532 | CAGGGTAAGGATGCAGAGCG | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2999 | 8609 | 0.179034 | CCAGGGTAAGGATGCAGAGC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3000 | 8610 | 1.415659 | CTCCAGGGTAAGGATGCAGAG | 59.584 | 57.143 | 0.00 | 0.00 | 33.99 | 3.35 |
3001 | 8611 | 1.500474 | CTCCAGGGTAAGGATGCAGA | 58.500 | 55.000 | 0.00 | 0.00 | 33.99 | 4.26 |
3002 | 8612 | 0.471617 | CCTCCAGGGTAAGGATGCAG | 59.528 | 60.000 | 0.00 | 0.00 | 34.35 | 4.41 |
3003 | 8613 | 1.635817 | GCCTCCAGGGTAAGGATGCA | 61.636 | 60.000 | 4.89 | 0.00 | 43.59 | 3.96 |
3004 | 8614 | 1.149401 | GCCTCCAGGGTAAGGATGC | 59.851 | 63.158 | 0.00 | 0.00 | 39.12 | 3.91 |
3005 | 8615 | 0.918983 | TTGCCTCCAGGGTAAGGATG | 59.081 | 55.000 | 0.00 | 0.00 | 34.78 | 3.51 |
3006 | 8616 | 1.681229 | TTTGCCTCCAGGGTAAGGAT | 58.319 | 50.000 | 0.00 | 0.00 | 40.62 | 3.24 |
3007 | 8617 | 1.354368 | CTTTTGCCTCCAGGGTAAGGA | 59.646 | 52.381 | 0.00 | 0.00 | 40.62 | 3.36 |
3008 | 8618 | 1.839424 | CTTTTGCCTCCAGGGTAAGG | 58.161 | 55.000 | 0.00 | 0.00 | 40.62 | 2.69 |
3009 | 8619 | 1.177401 | GCTTTTGCCTCCAGGGTAAG | 58.823 | 55.000 | 0.00 | 0.00 | 40.62 | 2.34 |
3010 | 8620 | 3.356814 | GCTTTTGCCTCCAGGGTAA | 57.643 | 52.632 | 0.00 | 0.00 | 40.15 | 2.85 |
3022 | 8632 | 5.855395 | GTGAGTGATTTTCTGCTAGCTTTTG | 59.145 | 40.000 | 17.23 | 3.90 | 0.00 | 2.44 |
3023 | 8633 | 5.767168 | AGTGAGTGATTTTCTGCTAGCTTTT | 59.233 | 36.000 | 17.23 | 0.00 | 0.00 | 2.27 |
3024 | 8634 | 5.180868 | CAGTGAGTGATTTTCTGCTAGCTTT | 59.819 | 40.000 | 17.23 | 0.00 | 0.00 | 3.51 |
3025 | 8635 | 4.694509 | CAGTGAGTGATTTTCTGCTAGCTT | 59.305 | 41.667 | 17.23 | 0.00 | 0.00 | 3.74 |
3026 | 8636 | 4.252073 | CAGTGAGTGATTTTCTGCTAGCT | 58.748 | 43.478 | 17.23 | 0.00 | 0.00 | 3.32 |
3027 | 8637 | 3.181512 | GCAGTGAGTGATTTTCTGCTAGC | 60.182 | 47.826 | 8.10 | 8.10 | 45.14 | 3.42 |
3028 | 8638 | 4.596801 | GCAGTGAGTGATTTTCTGCTAG | 57.403 | 45.455 | 7.98 | 0.00 | 45.14 | 3.42 |
3032 | 8642 | 3.405831 | TCCAGCAGTGAGTGATTTTCTG | 58.594 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
3033 | 8643 | 3.777106 | TCCAGCAGTGAGTGATTTTCT | 57.223 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
3034 | 8644 | 3.817647 | AGTTCCAGCAGTGAGTGATTTTC | 59.182 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
3035 | 8645 | 3.567164 | CAGTTCCAGCAGTGAGTGATTTT | 59.433 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3036 | 8646 | 3.144506 | CAGTTCCAGCAGTGAGTGATTT | 58.855 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
3037 | 8647 | 2.551721 | CCAGTTCCAGCAGTGAGTGATT | 60.552 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3038 | 8648 | 1.002888 | CCAGTTCCAGCAGTGAGTGAT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3039 | 8649 | 0.394192 | CCAGTTCCAGCAGTGAGTGA | 59.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3040 | 8650 | 0.107456 | ACCAGTTCCAGCAGTGAGTG | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3041 | 8651 | 0.394565 | GACCAGTTCCAGCAGTGAGT | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3042 | 8652 | 0.321122 | GGACCAGTTCCAGCAGTGAG | 60.321 | 60.000 | 0.00 | 0.00 | 45.10 | 3.51 |
3043 | 8653 | 1.754745 | GGACCAGTTCCAGCAGTGA | 59.245 | 57.895 | 0.00 | 0.00 | 45.10 | 3.41 |
3044 | 8654 | 4.386413 | GGACCAGTTCCAGCAGTG | 57.614 | 61.111 | 0.00 | 0.00 | 45.10 | 3.66 |
3051 | 8661 | 1.056660 | TCTTCACCAGGACCAGTTCC | 58.943 | 55.000 | 0.00 | 0.00 | 46.33 | 3.62 |
3052 | 8662 | 2.930826 | TTCTTCACCAGGACCAGTTC | 57.069 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3053 | 8663 | 3.202151 | TCTTTTCTTCACCAGGACCAGTT | 59.798 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3054 | 8664 | 2.777692 | TCTTTTCTTCACCAGGACCAGT | 59.222 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3055 | 8665 | 3.492102 | TCTTTTCTTCACCAGGACCAG | 57.508 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3056 | 8666 | 3.943671 | TTCTTTTCTTCACCAGGACCA | 57.056 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
3057 | 8667 | 3.003378 | CGTTTCTTTTCTTCACCAGGACC | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
3058 | 8668 | 3.875134 | TCGTTTCTTTTCTTCACCAGGAC | 59.125 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3059 | 8669 | 4.127171 | CTCGTTTCTTTTCTTCACCAGGA | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3060 | 8670 | 3.251004 | CCTCGTTTCTTTTCTTCACCAGG | 59.749 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
3061 | 8671 | 4.127171 | TCCTCGTTTCTTTTCTTCACCAG | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3062 | 8672 | 4.127171 | CTCCTCGTTTCTTTTCTTCACCA | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
3063 | 8673 | 4.377897 | TCTCCTCGTTTCTTTTCTTCACC | 58.622 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
3064 | 8674 | 5.986004 | TTCTCCTCGTTTCTTTTCTTCAC | 57.014 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3065 | 8675 | 6.513393 | GCAATTCTCCTCGTTTCTTTTCTTCA | 60.513 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3066 | 8676 | 5.853810 | GCAATTCTCCTCGTTTCTTTTCTTC | 59.146 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3067 | 8677 | 5.532779 | AGCAATTCTCCTCGTTTCTTTTCTT | 59.467 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3068 | 8678 | 5.066593 | AGCAATTCTCCTCGTTTCTTTTCT | 58.933 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
3069 | 8679 | 5.363979 | AGCAATTCTCCTCGTTTCTTTTC | 57.636 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3070 | 8680 | 5.507985 | CCAAGCAATTCTCCTCGTTTCTTTT | 60.508 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3071 | 8681 | 4.022849 | CCAAGCAATTCTCCTCGTTTCTTT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3072 | 8682 | 3.503748 | CCAAGCAATTCTCCTCGTTTCTT | 59.496 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3073 | 8683 | 3.077359 | CCAAGCAATTCTCCTCGTTTCT | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3074 | 8684 | 2.162408 | CCCAAGCAATTCTCCTCGTTTC | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
3075 | 8685 | 2.162681 | CCCAAGCAATTCTCCTCGTTT | 58.837 | 47.619 | 0.00 | 0.00 | 0.00 | 3.60 |
3076 | 8686 | 1.614317 | CCCCAAGCAATTCTCCTCGTT | 60.614 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
3077 | 8687 | 0.035056 | CCCCAAGCAATTCTCCTCGT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3078 | 8688 | 1.379642 | GCCCCAAGCAATTCTCCTCG | 61.380 | 60.000 | 0.00 | 0.00 | 42.97 | 4.63 |
3079 | 8689 | 2.498077 | GCCCCAAGCAATTCTCCTC | 58.502 | 57.895 | 0.00 | 0.00 | 42.97 | 3.71 |
3080 | 8690 | 4.772678 | GCCCCAAGCAATTCTCCT | 57.227 | 55.556 | 0.00 | 0.00 | 42.97 | 3.69 |
3124 | 8734 | 2.686106 | GGCCTTGAGGTACGGGGA | 60.686 | 66.667 | 0.00 | 0.00 | 37.57 | 4.81 |
3128 | 8738 | 0.872388 | GTGTTTGGCCTTGAGGTACG | 59.128 | 55.000 | 3.32 | 0.00 | 37.57 | 3.67 |
3131 | 8741 | 0.468029 | CTGGTGTTTGGCCTTGAGGT | 60.468 | 55.000 | 3.32 | 0.00 | 37.57 | 3.85 |
3151 | 8761 | 2.158900 | AGTGTGTGGTCTTCAGAACCAG | 60.159 | 50.000 | 0.00 | 0.00 | 33.74 | 4.00 |
3163 | 8773 | 3.317993 | GCATTTTCCAGTTAGTGTGTGGT | 59.682 | 43.478 | 0.00 | 0.00 | 32.73 | 4.16 |
3167 | 8777 | 5.695851 | AGAAGCATTTTCCAGTTAGTGTG | 57.304 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
3169 | 8779 | 7.819900 | AGTACTAGAAGCATTTTCCAGTTAGTG | 59.180 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3196 | 8842 | 8.210946 | TCATTTCCGGAATAAGACACAGATAAT | 58.789 | 33.333 | 19.62 | 0.00 | 0.00 | 1.28 |
3210 | 8856 | 5.829924 | AGCATCTACAATTCATTTCCGGAAT | 59.170 | 36.000 | 19.62 | 5.48 | 36.57 | 3.01 |
3214 | 8860 | 4.336433 | ACCAGCATCTACAATTCATTTCCG | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3226 | 8872 | 9.516314 | GGTGAAAAATAATTTACCAGCATCTAC | 57.484 | 33.333 | 0.00 | 0.00 | 38.47 | 2.59 |
3230 | 8876 | 6.811170 | CGTGGTGAAAAATAATTTACCAGCAT | 59.189 | 34.615 | 4.17 | 0.00 | 46.02 | 3.79 |
3232 | 8878 | 6.088883 | CACGTGGTGAAAAATAATTTACCAGC | 59.911 | 38.462 | 7.95 | 1.07 | 46.02 | 4.85 |
3233 | 8879 | 7.142680 | ACACGTGGTGAAAAATAATTTACCAG | 58.857 | 34.615 | 21.57 | 2.73 | 46.02 | 4.00 |
3274 | 8921 | 9.737427 | GGTCAGTACATACATACATATAGCATC | 57.263 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
3303 | 8958 | 5.585047 | ACACCTGAGTTTGACTACTTTCAAC | 59.415 | 40.000 | 0.00 | 0.00 | 35.18 | 3.18 |
3304 | 8959 | 5.741011 | ACACCTGAGTTTGACTACTTTCAA | 58.259 | 37.500 | 0.00 | 0.00 | 33.55 | 2.69 |
3305 | 8960 | 5.353394 | ACACCTGAGTTTGACTACTTTCA | 57.647 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3306 | 8961 | 7.781548 | TTAACACCTGAGTTTGACTACTTTC | 57.218 | 36.000 | 0.00 | 0.00 | 33.07 | 2.62 |
3307 | 8962 | 8.456471 | GTTTTAACACCTGAGTTTGACTACTTT | 58.544 | 33.333 | 0.00 | 0.00 | 33.07 | 2.66 |
3308 | 8963 | 7.066645 | GGTTTTAACACCTGAGTTTGACTACTT | 59.933 | 37.037 | 3.41 | 0.00 | 33.50 | 2.24 |
3309 | 8964 | 6.541278 | GGTTTTAACACCTGAGTTTGACTACT | 59.459 | 38.462 | 3.41 | 0.00 | 33.50 | 2.57 |
3310 | 8965 | 6.316890 | TGGTTTTAACACCTGAGTTTGACTAC | 59.683 | 38.462 | 11.94 | 0.00 | 37.75 | 2.73 |
3311 | 8966 | 6.416415 | TGGTTTTAACACCTGAGTTTGACTA | 58.584 | 36.000 | 11.94 | 0.00 | 37.75 | 2.59 |
3312 | 8967 | 5.258051 | TGGTTTTAACACCTGAGTTTGACT | 58.742 | 37.500 | 11.94 | 0.00 | 37.75 | 3.41 |
3313 | 8968 | 5.570234 | TGGTTTTAACACCTGAGTTTGAC | 57.430 | 39.130 | 11.94 | 0.00 | 37.75 | 3.18 |
3314 | 8969 | 6.605594 | AGAATGGTTTTAACACCTGAGTTTGA | 59.394 | 34.615 | 11.94 | 0.00 | 37.75 | 2.69 |
3315 | 8970 | 6.805713 | AGAATGGTTTTAACACCTGAGTTTG | 58.194 | 36.000 | 11.94 | 0.00 | 37.75 | 2.93 |
3316 | 8971 | 7.418337 | AAGAATGGTTTTAACACCTGAGTTT | 57.582 | 32.000 | 11.94 | 0.00 | 37.75 | 2.66 |
3317 | 8972 | 7.418337 | AAAGAATGGTTTTAACACCTGAGTT | 57.582 | 32.000 | 11.94 | 2.53 | 37.75 | 3.01 |
3318 | 8973 | 7.342026 | AGAAAAGAATGGTTTTAACACCTGAGT | 59.658 | 33.333 | 11.94 | 0.00 | 37.75 | 3.41 |
3349 | 9004 | 5.765677 | TCAATTGACATGAGGTAAACGGAAA | 59.234 | 36.000 | 3.38 | 0.00 | 0.00 | 3.13 |
3359 | 9014 | 3.495193 | CTTGCGTTCAATTGACATGAGG | 58.505 | 45.455 | 7.89 | 0.32 | 0.00 | 3.86 |
3365 | 9020 | 3.436704 | TCATCTCCTTGCGTTCAATTGAC | 59.563 | 43.478 | 7.89 | 2.92 | 0.00 | 3.18 |
3370 | 9025 | 3.401033 | TCTTCATCTCCTTGCGTTCAA | 57.599 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
3371 | 9026 | 3.264947 | CATCTTCATCTCCTTGCGTTCA | 58.735 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3372 | 9027 | 2.611292 | CCATCTTCATCTCCTTGCGTTC | 59.389 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3373 | 9028 | 2.636830 | CCATCTTCATCTCCTTGCGTT | 58.363 | 47.619 | 0.00 | 0.00 | 0.00 | 4.84 |
3374 | 9029 | 1.745141 | GCCATCTTCATCTCCTTGCGT | 60.745 | 52.381 | 0.00 | 0.00 | 0.00 | 5.24 |
3375 | 9030 | 0.942962 | GCCATCTTCATCTCCTTGCG | 59.057 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3376 | 9031 | 1.948145 | CTGCCATCTTCATCTCCTTGC | 59.052 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
3377 | 9032 | 3.468770 | CTCTGCCATCTTCATCTCCTTG | 58.531 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3378 | 9033 | 2.158784 | GCTCTGCCATCTTCATCTCCTT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3379 | 9034 | 1.417145 | GCTCTGCCATCTTCATCTCCT | 59.583 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
3380 | 9035 | 1.873069 | CGCTCTGCCATCTTCATCTCC | 60.873 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
3394 | 9049 | 3.250323 | CATCGTCCACGCGCTCTG | 61.250 | 66.667 | 5.73 | 0.00 | 39.60 | 3.35 |
3400 | 9055 | 3.700961 | AATACGCATCGTCCACGC | 58.299 | 55.556 | 0.00 | 0.00 | 41.54 | 5.34 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.