Multiple sequence alignment - TraesCS5D01G446900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G446900 chr5D 100.000 2504 0 0 1 2504 496977608 496980111 0.000000e+00 4625.0
1 TraesCS5D01G446900 chr5D 85.595 597 67 13 976 1561 497038473 497039061 2.130000e-170 608.0
2 TraesCS5D01G446900 chr5D 84.729 203 15 11 320 514 496956272 496956466 3.290000e-44 189.0
3 TraesCS5D01G446900 chr5D 93.333 45 2 1 414 457 496977925 496977969 5.780000e-07 65.8
4 TraesCS5D01G446900 chr5D 93.333 45 2 1 318 362 496978021 496978064 5.780000e-07 65.8
5 TraesCS5D01G446900 chr5A 94.148 1162 40 12 821 1969 621177006 621178152 0.000000e+00 1744.0
6 TraesCS5D01G446900 chr5A 88.871 611 44 9 996 1599 621023404 621023997 0.000000e+00 730.0
7 TraesCS5D01G446900 chr5A 88.551 559 58 4 976 1534 621448677 621449229 0.000000e+00 673.0
8 TraesCS5D01G446900 chr5A 90.661 514 34 12 227 732 621176320 621176827 0.000000e+00 671.0
9 TraesCS5D01G446900 chr5A 88.372 559 59 4 976 1534 621444274 621444826 0.000000e+00 667.0
10 TraesCS5D01G446900 chr5A 91.943 211 7 2 2243 2444 621178160 621178369 1.130000e-73 287.0
11 TraesCS5D01G446900 chr5A 91.304 46 2 2 318 362 621176506 621176550 7.480000e-06 62.1
12 TraesCS5D01G446900 chr5B 92.672 887 33 8 732 1604 615741437 615742305 0.000000e+00 1249.0
13 TraesCS5D01G446900 chr5B 88.512 383 15 9 356 735 615741049 615741405 1.060000e-118 436.0
14 TraesCS5D01G446900 chr5B 92.308 247 10 5 1602 1848 615781068 615781305 2.380000e-90 342.0
15 TraesCS5D01G446900 chr5B 91.729 133 10 1 227 358 615739230 615739362 1.530000e-42 183.0
16 TraesCS5D01G446900 chrUn 85.667 607 63 16 976 1564 335555766 335555166 3.540000e-173 617.0
17 TraesCS5D01G446900 chrUn 85.502 607 64 16 976 1564 68274082 68273482 1.650000e-171 612.0
18 TraesCS5D01G446900 chrUn 85.596 604 63 16 976 1561 302517538 302518135 1.650000e-171 612.0
19 TraesCS5D01G446900 chr6A 88.110 471 40 9 1437 1903 539160208 539160666 1.690000e-151 545.0
20 TraesCS5D01G446900 chr6A 95.070 142 6 1 1907 2048 539167270 539167410 3.240000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G446900 chr5D 496977608 496980111 2503 False 1585.533333 4625 95.555333 1 2504 3 chr5D.!!$F3 2503
1 TraesCS5D01G446900 chr5D 497038473 497039061 588 False 608.000000 608 85.595000 976 1561 1 chr5D.!!$F2 585
2 TraesCS5D01G446900 chr5A 621023404 621023997 593 False 730.000000 730 88.871000 996 1599 1 chr5A.!!$F1 603
3 TraesCS5D01G446900 chr5A 621176320 621178369 2049 False 691.025000 1744 92.014000 227 2444 4 chr5A.!!$F2 2217
4 TraesCS5D01G446900 chr5A 621444274 621449229 4955 False 670.000000 673 88.461500 976 1534 2 chr5A.!!$F3 558
5 TraesCS5D01G446900 chr5B 615739230 615742305 3075 False 622.666667 1249 90.971000 227 1604 3 chr5B.!!$F2 1377
6 TraesCS5D01G446900 chrUn 335555166 335555766 600 True 617.000000 617 85.667000 976 1564 1 chrUn.!!$R2 588
7 TraesCS5D01G446900 chrUn 68273482 68274082 600 True 612.000000 612 85.502000 976 1564 1 chrUn.!!$R1 588
8 TraesCS5D01G446900 chrUn 302517538 302518135 597 False 612.000000 612 85.596000 976 1561 1 chrUn.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.106167 ACTCCGACAGCCCTGCTATA 60.106 55.0 0.0 0.0 36.4 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 6367 0.107456 AGTTCACCACCAGACAGCAG 59.893 55.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.619654 TTGCCTGTGGATTGACAAGG 58.380 50.000 0.00 0.00 0.00 3.61
21 22 0.895100 TGCCTGTGGATTGACAAGGC 60.895 55.000 6.64 6.64 39.06 4.35
22 23 1.926511 GCCTGTGGATTGACAAGGCG 61.927 60.000 0.00 0.00 33.44 5.52
23 24 0.606401 CCTGTGGATTGACAAGGCGT 60.606 55.000 0.00 0.00 0.00 5.68
24 25 1.238439 CTGTGGATTGACAAGGCGTT 58.762 50.000 0.00 0.00 0.00 4.84
25 26 1.608590 CTGTGGATTGACAAGGCGTTT 59.391 47.619 0.00 0.00 0.00 3.60
26 27 2.811431 CTGTGGATTGACAAGGCGTTTA 59.189 45.455 0.00 0.00 0.00 2.01
27 28 2.811431 TGTGGATTGACAAGGCGTTTAG 59.189 45.455 0.00 0.00 0.00 1.85
44 45 2.436115 GCCCTTGGCCGTACTCAC 60.436 66.667 0.00 0.00 44.06 3.51
45 46 3.065306 CCCTTGGCCGTACTCACA 58.935 61.111 0.00 0.00 0.00 3.58
46 47 1.373435 CCCTTGGCCGTACTCACAA 59.627 57.895 0.00 0.00 0.00 3.33
47 48 0.250553 CCCTTGGCCGTACTCACAAA 60.251 55.000 0.00 0.00 0.00 2.83
48 49 0.872388 CCTTGGCCGTACTCACAAAC 59.128 55.000 0.00 0.00 0.00 2.93
49 50 1.588674 CTTGGCCGTACTCACAAACA 58.411 50.000 0.00 0.00 0.00 2.83
50 51 1.263217 CTTGGCCGTACTCACAAACAC 59.737 52.381 0.00 0.00 0.00 3.32
51 52 0.178301 TGGCCGTACTCACAAACACA 59.822 50.000 0.00 0.00 0.00 3.72
52 53 0.865769 GGCCGTACTCACAAACACAG 59.134 55.000 0.00 0.00 0.00 3.66
53 54 0.865769 GCCGTACTCACAAACACAGG 59.134 55.000 0.00 0.00 0.00 4.00
54 55 1.508632 CCGTACTCACAAACACAGGG 58.491 55.000 0.00 0.00 0.00 4.45
55 56 1.202604 CCGTACTCACAAACACAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
56 57 2.036217 CCGTACTCACAAACACAGGGTA 59.964 50.000 0.00 0.00 0.00 3.69
57 58 3.306502 CCGTACTCACAAACACAGGGTAT 60.307 47.826 0.00 0.00 0.00 2.73
58 59 3.924686 CGTACTCACAAACACAGGGTATC 59.075 47.826 0.00 0.00 0.00 2.24
59 60 3.418684 ACTCACAAACACAGGGTATCC 57.581 47.619 0.00 0.00 0.00 2.59
60 61 2.979678 ACTCACAAACACAGGGTATCCT 59.020 45.455 0.00 0.00 46.26 3.24
61 62 3.394606 ACTCACAAACACAGGGTATCCTT 59.605 43.478 0.00 0.00 42.67 3.36
62 63 3.750371 TCACAAACACAGGGTATCCTTG 58.250 45.455 0.00 0.00 42.67 3.61
63 64 3.392947 TCACAAACACAGGGTATCCTTGA 59.607 43.478 10.17 0.00 42.67 3.02
64 65 4.042809 TCACAAACACAGGGTATCCTTGAT 59.957 41.667 10.17 0.00 42.67 2.57
65 66 4.396166 CACAAACACAGGGTATCCTTGATC 59.604 45.833 10.17 0.00 42.67 2.92
66 67 3.933861 AACACAGGGTATCCTTGATCC 57.066 47.619 10.17 0.00 42.67 3.36
67 68 2.127708 ACACAGGGTATCCTTGATCCC 58.872 52.381 10.17 0.00 42.67 3.85
68 69 1.421646 CACAGGGTATCCTTGATCCCC 59.578 57.143 0.00 0.00 42.67 4.81
69 70 0.687354 CAGGGTATCCTTGATCCCCG 59.313 60.000 0.00 0.00 42.18 5.73
70 71 0.473886 AGGGTATCCTTGATCCCCGG 60.474 60.000 0.00 0.00 42.18 5.73
71 72 0.767060 GGGTATCCTTGATCCCCGGT 60.767 60.000 0.00 0.00 28.75 5.28
72 73 0.396811 GGTATCCTTGATCCCCGGTG 59.603 60.000 0.00 0.00 0.00 4.94
73 74 1.129058 GTATCCTTGATCCCCGGTGT 58.871 55.000 0.00 0.00 0.00 4.16
74 75 1.070289 GTATCCTTGATCCCCGGTGTC 59.930 57.143 0.00 0.00 0.00 3.67
75 76 1.345715 ATCCTTGATCCCCGGTGTCC 61.346 60.000 0.00 0.00 0.00 4.02
76 77 1.995626 CCTTGATCCCCGGTGTCCT 60.996 63.158 0.00 0.00 0.00 3.85
77 78 1.221840 CTTGATCCCCGGTGTCCTG 59.778 63.158 0.00 0.00 0.00 3.86
78 79 1.229368 TTGATCCCCGGTGTCCTGA 60.229 57.895 0.00 0.00 0.00 3.86
79 80 1.264749 TTGATCCCCGGTGTCCTGAG 61.265 60.000 0.00 0.00 0.00 3.35
80 81 1.686110 GATCCCCGGTGTCCTGAGT 60.686 63.158 0.00 0.00 0.00 3.41
81 82 0.396695 GATCCCCGGTGTCCTGAGTA 60.397 60.000 0.00 0.00 0.00 2.59
82 83 0.686769 ATCCCCGGTGTCCTGAGTAC 60.687 60.000 0.00 0.00 0.00 2.73
83 84 1.608336 CCCCGGTGTCCTGAGTACA 60.608 63.158 0.00 0.00 0.00 2.90
84 85 1.590147 CCCGGTGTCCTGAGTACAC 59.410 63.158 0.00 0.00 45.21 2.90
95 96 3.403276 GAGTACACACTCCGACAGC 57.597 57.895 0.00 0.00 44.72 4.40
96 97 0.109226 GAGTACACACTCCGACAGCC 60.109 60.000 0.00 0.00 44.72 4.85
97 98 1.080025 GTACACACTCCGACAGCCC 60.080 63.158 0.00 0.00 0.00 5.19
98 99 1.228769 TACACACTCCGACAGCCCT 60.229 57.895 0.00 0.00 0.00 5.19
99 100 1.532604 TACACACTCCGACAGCCCTG 61.533 60.000 0.00 0.00 0.00 4.45
100 101 4.008933 ACACTCCGACAGCCCTGC 62.009 66.667 0.00 0.00 0.00 4.85
101 102 3.699894 CACTCCGACAGCCCTGCT 61.700 66.667 0.00 0.00 40.77 4.24
102 103 2.037367 ACTCCGACAGCCCTGCTA 59.963 61.111 0.00 0.00 36.40 3.49
103 104 1.381872 ACTCCGACAGCCCTGCTAT 60.382 57.895 0.00 0.00 36.40 2.97
104 105 0.106167 ACTCCGACAGCCCTGCTATA 60.106 55.000 0.00 0.00 36.40 1.31
105 106 1.261480 CTCCGACAGCCCTGCTATAT 58.739 55.000 0.00 0.00 36.40 0.86
106 107 1.620819 CTCCGACAGCCCTGCTATATT 59.379 52.381 0.00 0.00 36.40 1.28
107 108 1.344438 TCCGACAGCCCTGCTATATTG 59.656 52.381 0.00 0.00 36.40 1.90
108 109 1.151668 CGACAGCCCTGCTATATTGC 58.848 55.000 1.87 1.87 36.40 3.56
109 110 1.541015 CGACAGCCCTGCTATATTGCA 60.541 52.381 11.37 11.37 36.40 4.08
110 111 2.787994 GACAGCCCTGCTATATTGCAT 58.212 47.619 12.26 0.00 42.48 3.96
111 112 2.486982 GACAGCCCTGCTATATTGCATG 59.513 50.000 12.26 9.55 42.48 4.06
112 113 1.201647 CAGCCCTGCTATATTGCATGC 59.798 52.381 11.82 11.82 42.48 4.06
113 114 0.169672 GCCCTGCTATATTGCATGCG 59.830 55.000 14.09 1.50 42.48 4.73
114 115 0.806868 CCCTGCTATATTGCATGCGG 59.193 55.000 14.09 10.05 42.48 5.69
115 116 0.169672 CCTGCTATATTGCATGCGGC 59.830 55.000 14.09 10.36 42.48 6.53
116 117 1.162698 CTGCTATATTGCATGCGGCT 58.837 50.000 14.09 2.29 45.15 5.52
117 118 1.538512 CTGCTATATTGCATGCGGCTT 59.461 47.619 14.09 0.54 45.15 4.35
118 119 1.267533 TGCTATATTGCATGCGGCTTG 59.732 47.619 14.09 11.18 45.15 4.01
119 120 1.267806 GCTATATTGCATGCGGCTTGT 59.732 47.619 14.09 0.00 45.15 3.16
120 121 2.919387 GCTATATTGCATGCGGCTTGTG 60.919 50.000 14.09 6.92 45.15 3.33
121 122 0.249155 ATATTGCATGCGGCTTGTGC 60.249 50.000 14.09 15.60 45.15 4.57
122 123 1.314534 TATTGCATGCGGCTTGTGCT 61.315 50.000 14.09 8.82 45.15 4.40
123 124 1.314534 ATTGCATGCGGCTTGTGCTA 61.315 50.000 14.09 15.44 45.15 3.49
124 125 1.522302 TTGCATGCGGCTTGTGCTAA 61.522 50.000 14.09 12.87 45.15 3.09
125 126 1.314534 TGCATGCGGCTTGTGCTAAT 61.315 50.000 14.09 0.00 45.15 1.73
126 127 0.868602 GCATGCGGCTTGTGCTAATG 60.869 55.000 16.03 3.42 40.25 1.90
127 128 0.734309 CATGCGGCTTGTGCTAATGA 59.266 50.000 7.64 0.00 39.59 2.57
128 129 1.132834 CATGCGGCTTGTGCTAATGAA 59.867 47.619 7.64 0.00 39.59 2.57
129 130 1.462616 TGCGGCTTGTGCTAATGAAT 58.537 45.000 0.00 0.00 39.59 2.57
130 131 1.401552 TGCGGCTTGTGCTAATGAATC 59.598 47.619 0.00 0.00 39.59 2.52
131 132 1.595489 GCGGCTTGTGCTAATGAATCG 60.595 52.381 0.00 0.00 39.59 3.34
132 133 1.665679 CGGCTTGTGCTAATGAATCGT 59.334 47.619 0.00 0.00 39.59 3.73
133 134 2.095853 CGGCTTGTGCTAATGAATCGTT 59.904 45.455 0.00 0.00 39.59 3.85
134 135 3.426159 CGGCTTGTGCTAATGAATCGTTT 60.426 43.478 0.00 0.00 39.59 3.60
135 136 3.853671 GGCTTGTGCTAATGAATCGTTTG 59.146 43.478 0.00 0.00 39.59 2.93
136 137 4.475944 GCTTGTGCTAATGAATCGTTTGT 58.524 39.130 0.00 0.00 36.03 2.83
137 138 4.917415 GCTTGTGCTAATGAATCGTTTGTT 59.083 37.500 0.00 0.00 36.03 2.83
138 139 5.402270 GCTTGTGCTAATGAATCGTTTGTTT 59.598 36.000 0.00 0.00 36.03 2.83
139 140 6.074356 GCTTGTGCTAATGAATCGTTTGTTTT 60.074 34.615 0.00 0.00 36.03 2.43
140 141 7.114247 GCTTGTGCTAATGAATCGTTTGTTTTA 59.886 33.333 0.00 0.00 36.03 1.52
141 142 9.128107 CTTGTGCTAATGAATCGTTTGTTTTAT 57.872 29.630 0.00 0.00 0.00 1.40
142 143 9.469807 TTGTGCTAATGAATCGTTTGTTTTATT 57.530 25.926 0.00 0.00 0.00 1.40
143 144 9.469807 TGTGCTAATGAATCGTTTGTTTTATTT 57.530 25.926 0.00 0.00 0.00 1.40
149 150 9.862585 AATGAATCGTTTGTTTTATTTTTGCTC 57.137 25.926 0.00 0.00 0.00 4.26
150 151 8.412608 TGAATCGTTTGTTTTATTTTTGCTCA 57.587 26.923 0.00 0.00 0.00 4.26
151 152 8.873830 TGAATCGTTTGTTTTATTTTTGCTCAA 58.126 25.926 0.00 0.00 0.00 3.02
152 153 9.142993 GAATCGTTTGTTTTATTTTTGCTCAAC 57.857 29.630 0.00 0.00 0.00 3.18
153 154 6.687655 TCGTTTGTTTTATTTTTGCTCAACG 58.312 32.000 0.00 0.00 0.00 4.10
154 155 5.388288 CGTTTGTTTTATTTTTGCTCAACGC 59.612 36.000 0.00 0.00 39.77 4.84
165 166 1.955762 GCTCAACGCAAACAGCTAAG 58.044 50.000 0.00 0.00 42.61 2.18
166 167 1.264288 GCTCAACGCAAACAGCTAAGT 59.736 47.619 0.00 0.00 42.61 2.24
167 168 2.663063 GCTCAACGCAAACAGCTAAGTC 60.663 50.000 0.00 0.00 42.61 3.01
168 169 2.543848 CTCAACGCAAACAGCTAAGTCA 59.456 45.455 0.00 0.00 42.61 3.41
169 170 2.939756 TCAACGCAAACAGCTAAGTCAA 59.060 40.909 0.00 0.00 42.61 3.18
170 171 3.035942 CAACGCAAACAGCTAAGTCAAC 58.964 45.455 0.00 0.00 42.61 3.18
171 172 2.561569 ACGCAAACAGCTAAGTCAACT 58.438 42.857 0.00 0.00 42.61 3.16
172 173 2.943033 ACGCAAACAGCTAAGTCAACTT 59.057 40.909 0.46 0.46 42.61 2.66
173 174 4.124238 ACGCAAACAGCTAAGTCAACTTA 58.876 39.130 2.82 2.82 42.61 2.24
174 175 4.573201 ACGCAAACAGCTAAGTCAACTTAA 59.427 37.500 4.32 0.00 42.61 1.85
175 176 4.904154 CGCAAACAGCTAAGTCAACTTAAC 59.096 41.667 4.32 0.38 42.61 2.01
176 177 5.277345 CGCAAACAGCTAAGTCAACTTAACT 60.277 40.000 4.32 2.60 42.61 2.24
182 183 7.891183 CAGCTAAGTCAACTTAACTGTGTAT 57.109 36.000 18.66 0.00 42.90 2.29
183 184 7.954447 CAGCTAAGTCAACTTAACTGTGTATC 58.046 38.462 18.66 0.00 42.90 2.24
184 185 7.598869 CAGCTAAGTCAACTTAACTGTGTATCA 59.401 37.037 18.66 0.00 42.90 2.15
185 186 8.314751 AGCTAAGTCAACTTAACTGTGTATCAT 58.685 33.333 5.30 0.00 37.92 2.45
186 187 9.582431 GCTAAGTCAACTTAACTGTGTATCATA 57.418 33.333 4.32 0.00 37.92 2.15
192 193 9.406828 TCAACTTAACTGTGTATCATATATCGC 57.593 33.333 0.00 0.00 0.00 4.58
193 194 9.191995 CAACTTAACTGTGTATCATATATCGCA 57.808 33.333 0.00 0.00 0.00 5.10
194 195 9.929180 AACTTAACTGTGTATCATATATCGCAT 57.071 29.630 0.00 0.00 0.00 4.73
197 198 7.971004 AACTGTGTATCATATATCGCATACG 57.029 36.000 0.00 0.00 42.01 3.06
198 199 7.085052 ACTGTGTATCATATATCGCATACGT 57.915 36.000 0.00 0.00 41.18 3.57
199 200 8.205131 ACTGTGTATCATATATCGCATACGTA 57.795 34.615 0.00 0.00 41.18 3.57
200 201 8.837389 ACTGTGTATCATATATCGCATACGTAT 58.163 33.333 1.14 1.14 41.18 3.06
201 202 9.319223 CTGTGTATCATATATCGCATACGTATC 57.681 37.037 4.74 0.24 41.18 2.24
202 203 9.052759 TGTGTATCATATATCGCATACGTATCT 57.947 33.333 4.74 0.00 41.18 1.98
203 204 9.531412 GTGTATCATATATCGCATACGTATCTC 57.469 37.037 4.74 0.00 41.18 2.75
204 205 8.433126 TGTATCATATATCGCATACGTATCTCG 58.567 37.037 16.39 16.39 46.00 4.04
218 219 4.569029 CGTATCTCGTTTCTGAATTGTGC 58.431 43.478 0.00 0.00 34.52 4.57
219 220 4.492570 CGTATCTCGTTTCTGAATTGTGCC 60.493 45.833 0.00 0.00 34.52 5.01
220 221 3.126001 TCTCGTTTCTGAATTGTGCCT 57.874 42.857 0.00 0.00 0.00 4.75
221 222 2.807967 TCTCGTTTCTGAATTGTGCCTG 59.192 45.455 0.00 0.00 0.00 4.85
222 223 2.807967 CTCGTTTCTGAATTGTGCCTGA 59.192 45.455 0.00 0.00 0.00 3.86
223 224 3.210227 TCGTTTCTGAATTGTGCCTGAA 58.790 40.909 0.00 0.00 0.00 3.02
224 225 3.250762 TCGTTTCTGAATTGTGCCTGAAG 59.749 43.478 0.00 0.00 0.00 3.02
225 226 3.311966 GTTTCTGAATTGTGCCTGAAGC 58.688 45.455 0.00 0.00 44.14 3.86
230 231 0.813184 AATTGTGCCTGAAGCCATCG 59.187 50.000 0.00 0.00 42.71 3.84
234 235 3.869272 GCCTGAAGCCATCGCACG 61.869 66.667 0.00 0.00 37.52 5.34
269 271 5.561532 CGATCAAAGGATGTTGATATGTGCC 60.562 44.000 0.61 0.00 45.98 5.01
304 306 1.123077 TCTGCACCAGTGACAAGAGT 58.877 50.000 0.99 0.00 32.61 3.24
405 2099 1.502231 GAGCAAGACAAGTCGAAGCA 58.498 50.000 13.81 0.00 34.09 3.91
412 2106 3.643763 AGACAAGTCGAAGCAAGTACTG 58.356 45.455 0.00 0.00 34.09 2.74
413 2107 3.068307 AGACAAGTCGAAGCAAGTACTGT 59.932 43.478 0.00 0.00 34.09 3.55
448 2142 3.262420 GCGCAGAGGTAATCTCAGAAAA 58.738 45.455 0.30 0.00 44.81 2.29
510 2204 2.602217 CCACAGTTTGCACTTACGCTTC 60.602 50.000 0.00 0.00 0.00 3.86
511 2205 1.602377 ACAGTTTGCACTTACGCTTCC 59.398 47.619 0.00 0.00 0.00 3.46
514 2208 2.032924 AGTTTGCACTTACGCTTCCAAC 59.967 45.455 0.00 0.00 0.00 3.77
515 2209 1.669604 TTGCACTTACGCTTCCAACA 58.330 45.000 0.00 0.00 0.00 3.33
516 2210 1.669604 TGCACTTACGCTTCCAACAA 58.330 45.000 0.00 0.00 0.00 2.83
517 2211 2.017782 TGCACTTACGCTTCCAACAAA 58.982 42.857 0.00 0.00 0.00 2.83
519 2213 3.119459 TGCACTTACGCTTCCAACAAAAA 60.119 39.130 0.00 0.00 0.00 1.94
592 2288 1.808945 GTCTAGAACCGACGACCAGAA 59.191 52.381 0.00 0.00 0.00 3.02
641 2337 3.181506 GCCGAGCTAATTCCTTTTCAGTG 60.182 47.826 0.00 0.00 0.00 3.66
671 2370 7.349859 AGTCAAATATACTTGAGGTTATCCCCA 59.650 37.037 0.00 0.00 36.01 4.96
688 2387 2.060383 CACTCTCCCTGCCCATCGA 61.060 63.158 0.00 0.00 0.00 3.59
710 2410 0.608856 ACGCAGGTGCATGGAATTCA 60.609 50.000 7.93 0.00 42.21 2.57
800 2623 6.890663 TTGAACTCATTTTTGCAGAAACAG 57.109 33.333 4.29 6.74 0.00 3.16
819 2642 5.382618 ACAGAGTGCAAGGAAATCAAATC 57.617 39.130 0.00 0.00 0.00 2.17
857 2689 6.636666 TCGGTTCGCAACTTAATTAGTTAG 57.363 37.500 0.00 0.00 45.29 2.34
878 2710 3.399644 AGCCTAGACCTAGAGAAGCCATA 59.600 47.826 5.67 0.00 35.21 2.74
879 2711 3.508402 GCCTAGACCTAGAGAAGCCATAC 59.492 52.174 5.67 0.00 35.21 2.39
933 2765 2.919859 CGCAGCCTATCTCATCAATACG 59.080 50.000 0.00 0.00 0.00 3.06
1018 2850 1.022735 GATGGAGTACTCGCCGAAGA 58.977 55.000 16.56 0.00 36.30 2.87
1025 2857 0.311165 TACTCGCCGAAGATAGCAGC 59.689 55.000 0.00 0.00 0.00 5.25
1027 2859 1.211818 CTCGCCGAAGATAGCAGCAC 61.212 60.000 0.00 0.00 0.00 4.40
1071 2903 4.735132 ATGGTGGTCGTCACGGCG 62.735 66.667 4.80 4.80 46.96 6.46
1515 3362 2.274437 CCATACTAGGCTATGCATGCG 58.726 52.381 14.09 1.07 0.00 4.73
1586 3433 6.668541 ATAAAGTTGAGATCACAATCGTGG 57.331 37.500 8.86 0.00 43.79 4.94
1639 5926 2.034305 CACGCTATAGTTTAGACCGGCT 59.966 50.000 0.00 1.78 0.00 5.52
1641 5928 3.885297 ACGCTATAGTTTAGACCGGCTAA 59.115 43.478 0.00 7.86 37.30 3.09
1642 5929 4.522022 ACGCTATAGTTTAGACCGGCTAAT 59.478 41.667 15.91 7.67 38.79 1.73
1644 5931 5.169295 GCTATAGTTTAGACCGGCTAATGG 58.831 45.833 15.91 7.28 38.79 3.16
1645 5932 4.618920 ATAGTTTAGACCGGCTAATGGG 57.381 45.455 15.91 0.00 38.79 4.00
1646 5933 2.474112 AGTTTAGACCGGCTAATGGGA 58.526 47.619 15.91 2.65 38.79 4.37
1648 5935 4.228824 AGTTTAGACCGGCTAATGGGATA 58.771 43.478 15.91 1.79 38.79 2.59
1649 5936 4.657039 AGTTTAGACCGGCTAATGGGATAA 59.343 41.667 15.91 1.23 38.79 1.75
1650 5937 5.309806 AGTTTAGACCGGCTAATGGGATAAT 59.690 40.000 15.91 1.33 38.79 1.28
1651 5938 3.703001 AGACCGGCTAATGGGATAATG 57.297 47.619 0.00 0.00 0.00 1.90
1670 5957 8.009974 GGATAATGTGTTACGATTCATGTAAGC 58.990 37.037 0.00 0.00 32.79 3.09
1705 5992 3.063861 CGTGCTTGATATGCAGTGCTTAA 59.936 43.478 17.60 1.66 41.41 1.85
1706 5993 4.260907 CGTGCTTGATATGCAGTGCTTAAT 60.261 41.667 17.60 6.89 41.41 1.40
1707 5994 5.585390 GTGCTTGATATGCAGTGCTTAATT 58.415 37.500 17.60 0.01 41.41 1.40
1708 5995 5.457799 GTGCTTGATATGCAGTGCTTAATTG 59.542 40.000 17.60 7.73 41.41 2.32
1717 6004 5.893687 TGCAGTGCTTAATTGTATGAATGG 58.106 37.500 17.60 0.00 0.00 3.16
1753 6040 0.895530 TCAGGGGTGAAGCTAGAACG 59.104 55.000 0.00 0.00 0.00 3.95
1754 6041 0.608640 CAGGGGTGAAGCTAGAACGT 59.391 55.000 0.00 0.00 0.00 3.99
1868 6155 2.731341 CGTCGTGTCACAGTTATCTCCC 60.731 54.545 3.42 0.00 0.00 4.30
1880 6167 7.942341 TCACAGTTATCTCCCAAGTACAAAAAT 59.058 33.333 0.00 0.00 0.00 1.82
1969 6256 1.069090 GAACACTGCACCCACTCGA 59.931 57.895 0.00 0.00 0.00 4.04
1970 6257 0.946221 GAACACTGCACCCACTCGAG 60.946 60.000 11.84 11.84 0.00 4.04
1971 6258 1.686325 AACACTGCACCCACTCGAGT 61.686 55.000 13.58 13.58 0.00 4.18
1972 6259 1.373497 CACTGCACCCACTCGAGTC 60.373 63.158 16.96 4.52 0.00 3.36
1975 6262 2.262915 GCACCCACTCGAGTCCAG 59.737 66.667 16.96 9.75 0.00 3.86
1976 6263 2.262915 CACCCACTCGAGTCCAGC 59.737 66.667 16.96 0.00 0.00 4.85
1977 6264 2.997897 ACCCACTCGAGTCCAGCC 60.998 66.667 16.96 0.00 0.00 4.85
1978 6265 2.997315 CCCACTCGAGTCCAGCCA 60.997 66.667 16.96 0.00 0.00 4.75
1979 6266 2.262915 CCACTCGAGTCCAGCCAC 59.737 66.667 16.96 0.00 0.00 5.01
1980 6267 2.262915 CACTCGAGTCCAGCCACC 59.737 66.667 16.96 0.00 0.00 4.61
1981 6268 2.118513 ACTCGAGTCCAGCCACCT 59.881 61.111 13.58 0.00 0.00 4.00
1982 6269 1.534235 ACTCGAGTCCAGCCACCTT 60.534 57.895 13.58 0.00 0.00 3.50
1983 6270 1.079543 CTCGAGTCCAGCCACCTTG 60.080 63.158 3.62 0.00 0.00 3.61
1984 6271 2.046892 CGAGTCCAGCCACCTTGG 60.047 66.667 0.00 0.00 41.55 3.61
2001 6288 2.050985 GCGTTGAGCTTGTGGTGC 60.051 61.111 0.00 0.00 44.04 5.01
2002 6289 2.639286 CGTTGAGCTTGTGGTGCC 59.361 61.111 0.00 0.00 0.00 5.01
2003 6290 1.893808 CGTTGAGCTTGTGGTGCCT 60.894 57.895 0.00 0.00 0.00 4.75
2004 6291 1.845809 CGTTGAGCTTGTGGTGCCTC 61.846 60.000 0.00 0.00 0.00 4.70
2006 6293 0.819259 TTGAGCTTGTGGTGCCTCAC 60.819 55.000 0.00 0.22 38.09 3.51
2007 6294 1.227943 GAGCTTGTGGTGCCTCACA 60.228 57.895 5.28 5.28 44.81 3.58
2008 6295 0.607489 GAGCTTGTGGTGCCTCACAT 60.607 55.000 9.53 0.00 45.63 3.21
2009 6296 0.892358 AGCTTGTGGTGCCTCACATG 60.892 55.000 9.53 12.10 45.63 3.21
2010 6297 0.890542 GCTTGTGGTGCCTCACATGA 60.891 55.000 19.39 4.48 45.63 3.07
2011 6298 0.877071 CTTGTGGTGCCTCACATGAC 59.123 55.000 0.00 0.00 45.63 3.06
2013 6300 2.358615 TGGTGCCTCACATGACGC 60.359 61.111 0.00 0.00 35.86 5.19
2015 6302 2.393768 GGTGCCTCACATGACGCTG 61.394 63.158 0.00 0.00 35.86 5.18
2016 6303 2.046988 TGCCTCACATGACGCTGG 60.047 61.111 0.00 0.00 0.00 4.85
2017 6304 3.503363 GCCTCACATGACGCTGGC 61.503 66.667 0.00 1.92 0.00 4.85
2018 6305 2.821366 CCTCACATGACGCTGGCC 60.821 66.667 0.00 0.00 0.00 5.36
2020 6307 2.046988 TCACATGACGCTGGCCTG 60.047 61.111 3.32 4.26 0.00 4.85
2021 6308 3.129502 CACATGACGCTGGCCTGG 61.130 66.667 12.06 4.29 0.00 4.45
2043 6330 2.902846 AGACGGATCGGCTCGGAG 60.903 66.667 0.00 0.00 44.38 4.63
2045 6332 3.183776 GACGGATCGGCTCGGAGAC 62.184 68.421 9.69 4.60 0.00 3.36
2046 6333 3.209812 CGGATCGGCTCGGAGACA 61.210 66.667 12.14 0.00 0.00 3.41
2047 6334 2.725008 GGATCGGCTCGGAGACAG 59.275 66.667 12.14 4.05 0.00 3.51
2049 6336 2.043852 ATCGGCTCGGAGACAGGT 60.044 61.111 12.14 0.00 0.00 4.00
2050 6337 2.343163 GATCGGCTCGGAGACAGGTG 62.343 65.000 12.14 0.00 0.00 4.00
2051 6338 3.374402 CGGCTCGGAGACAGGTGT 61.374 66.667 12.14 0.00 0.00 4.16
2052 6339 2.262915 GGCTCGGAGACAGGTGTG 59.737 66.667 9.69 0.00 0.00 3.82
2053 6340 2.262915 GCTCGGAGACAGGTGTGG 59.737 66.667 9.69 0.00 0.00 4.17
2054 6341 2.574955 GCTCGGAGACAGGTGTGGT 61.575 63.158 9.69 0.00 0.00 4.16
2055 6342 1.587054 CTCGGAGACAGGTGTGGTC 59.413 63.158 0.00 0.00 35.50 4.02
2056 6343 2.201436 CTCGGAGACAGGTGTGGTCG 62.201 65.000 0.00 0.00 40.20 4.79
2057 6344 2.048127 GGAGACAGGTGTGGTCGC 60.048 66.667 0.00 0.00 40.20 5.19
2058 6345 2.048127 GAGACAGGTGTGGTCGCC 60.048 66.667 0.00 0.00 43.92 5.54
2065 6352 3.036084 GTGTGGTCGCCGTGTCAG 61.036 66.667 0.00 0.00 0.00 3.51
2066 6353 4.293648 TGTGGTCGCCGTGTCAGG 62.294 66.667 0.00 0.00 0.00 3.86
2067 6354 4.295119 GTGGTCGCCGTGTCAGGT 62.295 66.667 0.00 0.00 0.00 4.00
2068 6355 3.986006 TGGTCGCCGTGTCAGGTC 61.986 66.667 0.00 0.00 0.00 3.85
2069 6356 3.681835 GGTCGCCGTGTCAGGTCT 61.682 66.667 0.00 0.00 0.00 3.85
2072 6359 2.432628 CGCCGTGTCAGGTCTTCC 60.433 66.667 0.00 0.00 0.00 3.46
2073 6360 2.932234 CGCCGTGTCAGGTCTTCCT 61.932 63.158 0.00 0.00 46.37 3.36
2082 6369 1.220206 AGGTCTTCCTGCGATGCTG 59.780 57.895 0.00 0.00 43.33 4.41
2083 6370 2.467826 GGTCTTCCTGCGATGCTGC 61.468 63.158 0.00 0.00 0.00 5.25
2084 6371 1.449246 GTCTTCCTGCGATGCTGCT 60.449 57.895 0.00 0.00 35.36 4.24
2085 6372 1.449070 TCTTCCTGCGATGCTGCTG 60.449 57.895 0.00 0.00 35.36 4.41
2086 6373 1.744368 CTTCCTGCGATGCTGCTGT 60.744 57.895 0.00 0.00 35.36 4.40
2087 6374 1.703438 CTTCCTGCGATGCTGCTGTC 61.703 60.000 0.00 0.00 35.36 3.51
2088 6375 2.125229 CCTGCGATGCTGCTGTCT 60.125 61.111 0.00 0.00 35.36 3.41
2089 6376 2.461945 CCTGCGATGCTGCTGTCTG 61.462 63.158 0.00 0.00 35.36 3.51
2090 6377 2.435410 TGCGATGCTGCTGTCTGG 60.435 61.111 0.00 0.00 35.36 3.86
2092 6379 2.747822 GCGATGCTGCTGTCTGGTG 61.748 63.158 0.00 0.00 0.00 4.17
2093 6380 2.104859 CGATGCTGCTGTCTGGTGG 61.105 63.158 0.00 0.00 0.00 4.61
2095 6382 1.303074 ATGCTGCTGTCTGGTGGTG 60.303 57.895 0.00 0.00 0.00 4.17
2096 6383 1.771783 ATGCTGCTGTCTGGTGGTGA 61.772 55.000 0.00 0.00 0.00 4.02
2097 6384 1.227943 GCTGCTGTCTGGTGGTGAA 60.228 57.895 0.00 0.00 0.00 3.18
2098 6385 1.510480 GCTGCTGTCTGGTGGTGAAC 61.510 60.000 0.00 0.00 0.00 3.18
2099 6386 0.107456 CTGCTGTCTGGTGGTGAACT 59.893 55.000 0.00 0.00 0.00 3.01
2100 6387 1.344438 CTGCTGTCTGGTGGTGAACTA 59.656 52.381 0.00 0.00 0.00 2.24
2101 6388 1.070134 TGCTGTCTGGTGGTGAACTAC 59.930 52.381 0.00 0.00 0.00 2.73
2102 6389 1.344763 GCTGTCTGGTGGTGAACTACT 59.655 52.381 0.00 0.00 0.00 2.57
2103 6390 2.868044 GCTGTCTGGTGGTGAACTACTG 60.868 54.545 0.00 0.00 0.00 2.74
2104 6391 1.070134 TGTCTGGTGGTGAACTACTGC 59.930 52.381 0.00 0.00 0.00 4.40
2105 6392 1.070134 GTCTGGTGGTGAACTACTGCA 59.930 52.381 0.00 0.00 0.00 4.41
2107 6394 1.070758 CTGGTGGTGAACTACTGCACT 59.929 52.381 0.00 0.00 35.43 4.40
2108 6395 1.070134 TGGTGGTGAACTACTGCACTC 59.930 52.381 0.00 0.00 35.43 3.51
2110 6397 0.317160 TGGTGAACTACTGCACTCGG 59.683 55.000 0.00 0.00 35.43 4.63
2111 6398 0.389948 GGTGAACTACTGCACTCGGG 60.390 60.000 0.00 0.00 35.43 5.14
2113 6400 1.000506 GTGAACTACTGCACTCGGGAA 59.999 52.381 0.00 0.00 32.44 3.97
2114 6401 1.000506 TGAACTACTGCACTCGGGAAC 59.999 52.381 0.00 0.00 0.00 3.62
2115 6402 1.000506 GAACTACTGCACTCGGGAACA 59.999 52.381 0.00 0.00 0.00 3.18
2116 6403 1.045407 ACTACTGCACTCGGGAACAA 58.955 50.000 0.00 0.00 0.00 2.83
2117 6404 1.000955 ACTACTGCACTCGGGAACAAG 59.999 52.381 0.00 0.00 0.00 3.16
2118 6405 1.000955 CTACTGCACTCGGGAACAAGT 59.999 52.381 0.00 0.00 0.00 3.16
2119 6406 0.180406 ACTGCACTCGGGAACAAGTT 59.820 50.000 0.00 0.00 0.00 2.66
2120 6407 0.588252 CTGCACTCGGGAACAAGTTG 59.412 55.000 0.00 0.00 0.00 3.16
2121 6408 0.179234 TGCACTCGGGAACAAGTTGA 59.821 50.000 10.54 0.00 0.00 3.18
2122 6409 1.202758 TGCACTCGGGAACAAGTTGAT 60.203 47.619 10.54 0.00 0.00 2.57
2123 6410 1.464997 GCACTCGGGAACAAGTTGATC 59.535 52.381 10.54 7.28 0.00 2.92
2124 6411 2.076863 CACTCGGGAACAAGTTGATCC 58.923 52.381 20.94 20.94 38.46 3.36
2125 6412 1.697432 ACTCGGGAACAAGTTGATCCA 59.303 47.619 27.63 11.93 40.67 3.41
2126 6413 2.105821 ACTCGGGAACAAGTTGATCCAA 59.894 45.455 27.63 16.78 40.67 3.53
2127 6414 2.744202 CTCGGGAACAAGTTGATCCAAG 59.256 50.000 27.63 20.90 40.67 3.61
2128 6415 1.200020 CGGGAACAAGTTGATCCAAGC 59.800 52.381 27.63 13.55 40.67 4.01
2129 6416 2.519013 GGGAACAAGTTGATCCAAGCT 58.481 47.619 27.63 0.00 40.67 3.74
2130 6417 2.229784 GGGAACAAGTTGATCCAAGCTG 59.770 50.000 27.63 0.00 40.67 4.24
2131 6418 2.229784 GGAACAAGTTGATCCAAGCTGG 59.770 50.000 23.37 0.00 38.95 4.85
2132 6419 1.915141 ACAAGTTGATCCAAGCTGGG 58.085 50.000 10.54 0.00 38.32 4.45
2133 6420 0.529378 CAAGTTGATCCAAGCTGGGC 59.471 55.000 0.56 0.00 38.32 5.36
2134 6421 0.407139 AAGTTGATCCAAGCTGGGCT 59.593 50.000 0.56 0.00 42.56 5.19
2135 6422 0.323178 AGTTGATCCAAGCTGGGCTG 60.323 55.000 0.56 0.00 39.62 4.85
2136 6423 1.000521 TTGATCCAAGCTGGGCTGG 60.001 57.895 0.56 0.00 39.62 4.85
2137 6424 2.832201 GATCCAAGCTGGGCTGGC 60.832 66.667 0.56 0.00 39.62 4.85
2138 6425 3.650298 GATCCAAGCTGGGCTGGCA 62.650 63.158 0.56 0.00 39.62 4.92
2139 6426 3.228243 ATCCAAGCTGGGCTGGCAA 62.228 57.895 0.56 0.00 39.62 4.52
2140 6427 3.379445 CCAAGCTGGGCTGGCAAG 61.379 66.667 0.00 0.32 39.62 4.01
2175 6462 4.519540 TTTTTGAATAGCCACCTTCTGC 57.480 40.909 0.00 0.00 0.00 4.26
2176 6463 2.128771 TTGAATAGCCACCTTCTGCC 57.871 50.000 0.00 0.00 0.00 4.85
2177 6464 0.107703 TGAATAGCCACCTTCTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
2178 6465 0.178068 GAATAGCCACCTTCTGCCGA 59.822 55.000 0.00 0.00 0.00 5.54
2179 6466 0.839946 AATAGCCACCTTCTGCCGAT 59.160 50.000 0.00 0.00 0.00 4.18
2180 6467 0.107456 ATAGCCACCTTCTGCCGATG 59.893 55.000 0.00 0.00 0.00 3.84
2181 6468 0.975556 TAGCCACCTTCTGCCGATGA 60.976 55.000 0.00 0.00 0.00 2.92
2182 6469 1.377202 GCCACCTTCTGCCGATGAA 60.377 57.895 0.00 0.00 0.00 2.57
2183 6470 0.960364 GCCACCTTCTGCCGATGAAA 60.960 55.000 0.00 0.00 0.00 2.69
2184 6471 0.804989 CCACCTTCTGCCGATGAAAC 59.195 55.000 0.00 0.00 0.00 2.78
2185 6472 0.804989 CACCTTCTGCCGATGAAACC 59.195 55.000 0.00 0.00 0.00 3.27
2186 6473 0.322546 ACCTTCTGCCGATGAAACCC 60.323 55.000 0.00 0.00 0.00 4.11
2187 6474 0.322456 CCTTCTGCCGATGAAACCCA 60.322 55.000 0.00 0.00 0.00 4.51
2188 6475 1.089920 CTTCTGCCGATGAAACCCAG 58.910 55.000 0.00 0.00 0.00 4.45
2189 6476 0.690192 TTCTGCCGATGAAACCCAGA 59.310 50.000 0.00 0.00 0.00 3.86
2190 6477 0.911769 TCTGCCGATGAAACCCAGAT 59.088 50.000 0.00 0.00 0.00 2.90
2191 6478 1.134401 TCTGCCGATGAAACCCAGATC 60.134 52.381 0.00 0.00 0.00 2.75
2192 6479 0.617935 TGCCGATGAAACCCAGATCA 59.382 50.000 0.00 0.00 0.00 2.92
2193 6480 1.303309 GCCGATGAAACCCAGATCAG 58.697 55.000 0.00 0.00 0.00 2.90
2194 6481 1.303309 CCGATGAAACCCAGATCAGC 58.697 55.000 0.00 0.00 0.00 4.26
2195 6482 1.303309 CGATGAAACCCAGATCAGCC 58.697 55.000 0.00 0.00 0.00 4.85
2196 6483 1.407299 CGATGAAACCCAGATCAGCCA 60.407 52.381 0.00 0.00 0.00 4.75
2197 6484 2.726821 GATGAAACCCAGATCAGCCAA 58.273 47.619 0.00 0.00 0.00 4.52
2198 6485 2.205022 TGAAACCCAGATCAGCCAAG 57.795 50.000 0.00 0.00 0.00 3.61
2199 6486 1.272092 TGAAACCCAGATCAGCCAAGG 60.272 52.381 0.00 0.00 0.00 3.61
2200 6487 0.779997 AAACCCAGATCAGCCAAGGT 59.220 50.000 0.00 0.00 0.00 3.50
2201 6488 0.038744 AACCCAGATCAGCCAAGGTG 59.961 55.000 0.00 0.00 0.00 4.00
2202 6489 1.751927 CCCAGATCAGCCAAGGTGC 60.752 63.158 0.00 0.00 0.00 5.01
2203 6490 1.001764 CCAGATCAGCCAAGGTGCA 60.002 57.895 0.00 0.00 0.00 4.57
2204 6491 1.310933 CCAGATCAGCCAAGGTGCAC 61.311 60.000 8.80 8.80 0.00 4.57
2205 6492 0.607217 CAGATCAGCCAAGGTGCACA 60.607 55.000 20.43 0.00 0.00 4.57
2206 6493 0.607489 AGATCAGCCAAGGTGCACAC 60.607 55.000 20.43 8.23 0.00 3.82
2207 6494 1.915614 GATCAGCCAAGGTGCACACG 61.916 60.000 20.43 5.77 0.00 4.49
2208 6495 2.680974 ATCAGCCAAGGTGCACACGT 62.681 55.000 20.43 3.48 0.00 4.49
2209 6496 2.591715 AGCCAAGGTGCACACGTC 60.592 61.111 20.43 0.19 0.00 4.34
2210 6497 2.899838 GCCAAGGTGCACACGTCA 60.900 61.111 20.43 0.00 0.00 4.35
2211 6498 2.477176 GCCAAGGTGCACACGTCAA 61.477 57.895 20.43 0.00 0.00 3.18
2212 6499 1.355210 CCAAGGTGCACACGTCAAC 59.645 57.895 20.43 0.00 0.00 3.18
2213 6500 1.011242 CAAGGTGCACACGTCAACG 60.011 57.895 20.43 0.12 46.33 4.10
2214 6501 1.153529 AAGGTGCACACGTCAACGA 60.154 52.632 20.43 0.00 43.02 3.85
2215 6502 0.741574 AAGGTGCACACGTCAACGAA 60.742 50.000 20.43 0.00 43.02 3.85
2216 6503 1.011574 GGTGCACACGTCAACGAAC 60.012 57.895 20.43 0.00 43.02 3.95
2217 6504 1.011574 GTGCACACGTCAACGAACC 60.012 57.895 13.17 0.00 43.02 3.62
2218 6505 1.448013 TGCACACGTCAACGAACCA 60.448 52.632 9.88 0.00 43.02 3.67
2219 6506 0.812014 TGCACACGTCAACGAACCAT 60.812 50.000 9.88 0.00 43.02 3.55
2220 6507 0.384230 GCACACGTCAACGAACCATG 60.384 55.000 9.88 0.00 43.02 3.66
2221 6508 1.213491 CACACGTCAACGAACCATGA 58.787 50.000 9.88 0.00 43.02 3.07
2222 6509 1.798223 CACACGTCAACGAACCATGAT 59.202 47.619 9.88 0.00 43.02 2.45
2223 6510 2.990514 CACACGTCAACGAACCATGATA 59.009 45.455 9.88 0.00 43.02 2.15
2224 6511 3.430556 CACACGTCAACGAACCATGATAA 59.569 43.478 9.88 0.00 43.02 1.75
2225 6512 3.430895 ACACGTCAACGAACCATGATAAC 59.569 43.478 9.88 0.00 43.02 1.89
2226 6513 3.678072 CACGTCAACGAACCATGATAACT 59.322 43.478 9.88 0.00 43.02 2.24
2227 6514 4.151689 CACGTCAACGAACCATGATAACTT 59.848 41.667 9.88 0.00 43.02 2.66
2228 6515 4.387862 ACGTCAACGAACCATGATAACTTC 59.612 41.667 9.88 0.00 43.02 3.01
2229 6516 4.490319 CGTCAACGAACCATGATAACTTCG 60.490 45.833 0.00 1.39 43.02 3.79
2230 6517 4.624024 GTCAACGAACCATGATAACTTCGA 59.376 41.667 5.71 0.00 39.03 3.71
2231 6518 4.624024 TCAACGAACCATGATAACTTCGAC 59.376 41.667 5.71 0.00 39.03 4.20
2232 6519 4.451629 ACGAACCATGATAACTTCGACT 57.548 40.909 5.71 0.00 39.03 4.18
2233 6520 4.174009 ACGAACCATGATAACTTCGACTG 58.826 43.478 5.71 0.00 39.03 3.51
2234 6521 3.000322 CGAACCATGATAACTTCGACTGC 60.000 47.826 0.00 0.00 38.18 4.40
2235 6522 2.540515 ACCATGATAACTTCGACTGCG 58.459 47.619 0.00 0.00 39.35 5.18
2236 6523 2.094182 ACCATGATAACTTCGACTGCGT 60.094 45.455 0.00 0.00 38.98 5.24
2237 6524 2.535984 CCATGATAACTTCGACTGCGTC 59.464 50.000 0.00 0.00 38.98 5.19
2238 6525 2.273370 TGATAACTTCGACTGCGTCC 57.727 50.000 0.00 0.00 38.98 4.79
2239 6526 1.816835 TGATAACTTCGACTGCGTCCT 59.183 47.619 0.00 0.00 38.98 3.85
2240 6527 2.186076 GATAACTTCGACTGCGTCCTG 58.814 52.381 0.00 0.00 38.98 3.86
2241 6528 1.241165 TAACTTCGACTGCGTCCTGA 58.759 50.000 0.00 0.00 38.98 3.86
2314 6601 0.173708 GAGGACTAGCCGACACAAGG 59.826 60.000 0.00 0.00 43.43 3.61
2333 6620 2.481289 GGACTTGAGAAGGTCCCAAG 57.519 55.000 0.00 0.00 44.35 3.61
2337 6624 2.370189 ACTTGAGAAGGTCCCAAGACTG 59.630 50.000 11.32 0.00 43.05 3.51
2351 6638 4.339530 CCCAAGACTGATATCTCTCGTTCA 59.660 45.833 3.98 0.00 0.00 3.18
2426 6970 7.734924 TTTGAGATAGTGGCATCAATATGAC 57.265 36.000 1.66 0.00 42.02 3.06
2446 7017 5.433526 TGACACTTACAGTAGCCAAAAACT 58.566 37.500 0.00 0.00 0.00 2.66
2447 7018 5.883673 TGACACTTACAGTAGCCAAAAACTT 59.116 36.000 0.00 0.00 0.00 2.66
2449 7020 5.883673 ACACTTACAGTAGCCAAAAACTTCA 59.116 36.000 0.00 0.00 0.00 3.02
2450 7021 6.376018 ACACTTACAGTAGCCAAAAACTTCAA 59.624 34.615 0.00 0.00 0.00 2.69
2452 7023 7.379529 CACTTACAGTAGCCAAAAACTTCAATG 59.620 37.037 0.00 0.00 0.00 2.82
2453 7024 5.852282 ACAGTAGCCAAAAACTTCAATGT 57.148 34.783 0.00 0.00 0.00 2.71
2454 7025 6.952773 ACAGTAGCCAAAAACTTCAATGTA 57.047 33.333 0.00 0.00 0.00 2.29
2455 7026 7.524717 ACAGTAGCCAAAAACTTCAATGTAT 57.475 32.000 0.00 0.00 0.00 2.29
2456 7027 8.630054 ACAGTAGCCAAAAACTTCAATGTATA 57.370 30.769 0.00 0.00 0.00 1.47
2457 7028 9.243105 ACAGTAGCCAAAAACTTCAATGTATAT 57.757 29.630 0.00 0.00 0.00 0.86
2462 7033 9.643693 AGCCAAAAACTTCAATGTATATTTCAG 57.356 29.630 0.00 0.00 0.00 3.02
2463 7034 9.423061 GCCAAAAACTTCAATGTATATTTCAGT 57.577 29.630 0.00 0.00 0.00 3.41
2481 7052 8.702163 ATTTCAGTGTTTCAAAAACTACCAAG 57.298 30.769 0.00 0.00 0.00 3.61
2482 7053 6.202516 TCAGTGTTTCAAAAACTACCAAGG 57.797 37.500 0.00 0.00 0.00 3.61
2483 7054 4.803613 CAGTGTTTCAAAAACTACCAAGGC 59.196 41.667 0.00 0.00 0.00 4.35
2484 7055 4.116961 GTGTTTCAAAAACTACCAAGGCC 58.883 43.478 0.00 0.00 0.00 5.19
2485 7056 4.027437 TGTTTCAAAAACTACCAAGGCCT 58.973 39.130 0.00 0.00 0.00 5.19
2487 7058 2.871453 TCAAAAACTACCAAGGCCTCC 58.129 47.619 5.23 0.00 0.00 4.30
2488 7059 2.175931 TCAAAAACTACCAAGGCCTCCA 59.824 45.455 5.23 0.00 0.00 3.86
2489 7060 2.287977 AAAACTACCAAGGCCTCCAC 57.712 50.000 5.23 0.00 0.00 4.02
2490 7061 1.446016 AAACTACCAAGGCCTCCACT 58.554 50.000 5.23 0.00 0.00 4.00
2491 7062 2.337359 AACTACCAAGGCCTCCACTA 57.663 50.000 5.23 0.00 0.00 2.74
2493 7064 2.119495 ACTACCAAGGCCTCCACTATG 58.881 52.381 5.23 0.00 0.00 2.23
2494 7065 1.417890 CTACCAAGGCCTCCACTATGG 59.582 57.143 16.01 16.01 39.43 2.74
2499 7070 3.006677 GCCTCCACTATGGCCCAA 58.993 61.111 0.00 0.00 43.11 4.12
2500 7071 1.152881 GCCTCCACTATGGCCCAAG 60.153 63.158 0.00 0.00 43.11 3.61
2501 7072 1.152881 CCTCCACTATGGCCCAAGC 60.153 63.158 0.00 0.00 37.47 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.895100 GCCTTGTCAATCCACAGGCA 60.895 55.000 6.17 0.00 38.98 4.75
4 5 0.606401 ACGCCTTGTCAATCCACAGG 60.606 55.000 0.00 0.00 0.00 4.00
5 6 1.238439 AACGCCTTGTCAATCCACAG 58.762 50.000 0.00 0.00 0.00 3.66
6 7 1.686355 AAACGCCTTGTCAATCCACA 58.314 45.000 0.00 0.00 0.00 4.17
7 8 2.414161 GCTAAACGCCTTGTCAATCCAC 60.414 50.000 0.00 0.00 0.00 4.02
8 9 1.810151 GCTAAACGCCTTGTCAATCCA 59.190 47.619 0.00 0.00 0.00 3.41
9 10 2.544480 GCTAAACGCCTTGTCAATCC 57.456 50.000 0.00 0.00 0.00 3.01
28 29 0.250553 TTTGTGAGTACGGCCAAGGG 60.251 55.000 2.24 0.00 0.00 3.95
29 30 0.872388 GTTTGTGAGTACGGCCAAGG 59.128 55.000 2.24 0.00 0.00 3.61
30 31 1.263217 GTGTTTGTGAGTACGGCCAAG 59.737 52.381 2.24 0.00 0.00 3.61
31 32 1.301423 GTGTTTGTGAGTACGGCCAA 58.699 50.000 2.24 0.00 0.00 4.52
32 33 0.178301 TGTGTTTGTGAGTACGGCCA 59.822 50.000 2.24 0.00 0.00 5.36
33 34 0.865769 CTGTGTTTGTGAGTACGGCC 59.134 55.000 0.00 0.00 0.00 6.13
34 35 0.865769 CCTGTGTTTGTGAGTACGGC 59.134 55.000 0.00 0.00 0.00 5.68
35 36 1.202604 ACCCTGTGTTTGTGAGTACGG 60.203 52.381 0.00 0.00 0.00 4.02
36 37 2.234300 ACCCTGTGTTTGTGAGTACG 57.766 50.000 0.00 0.00 0.00 3.67
37 38 4.020485 AGGATACCCTGTGTTTGTGAGTAC 60.020 45.833 0.00 0.00 42.42 2.73
38 39 4.164981 AGGATACCCTGTGTTTGTGAGTA 58.835 43.478 0.00 0.00 42.42 2.59
39 40 2.979678 AGGATACCCTGTGTTTGTGAGT 59.020 45.455 0.00 0.00 42.42 3.41
40 41 3.703001 AGGATACCCTGTGTTTGTGAG 57.297 47.619 0.00 0.00 42.42 3.51
41 42 3.392947 TCAAGGATACCCTGTGTTTGTGA 59.607 43.478 0.00 0.00 43.48 3.58
42 43 3.750371 TCAAGGATACCCTGTGTTTGTG 58.250 45.455 0.00 0.00 43.48 3.33
43 44 4.567747 GGATCAAGGATACCCTGTGTTTGT 60.568 45.833 0.00 0.00 43.48 2.83
44 45 3.947834 GGATCAAGGATACCCTGTGTTTG 59.052 47.826 0.00 0.00 43.48 2.93
45 46 3.053619 GGGATCAAGGATACCCTGTGTTT 60.054 47.826 0.00 0.00 43.48 2.83
46 47 2.509964 GGGATCAAGGATACCCTGTGTT 59.490 50.000 0.00 0.00 43.48 3.32
47 48 2.127708 GGGATCAAGGATACCCTGTGT 58.872 52.381 0.00 0.00 43.48 3.72
48 49 2.938956 GGGATCAAGGATACCCTGTG 57.061 55.000 0.00 0.00 43.48 3.66
53 54 0.396811 CACCGGGGATCAAGGATACC 59.603 60.000 6.32 0.00 42.16 2.73
54 55 1.070289 GACACCGGGGATCAAGGATAC 59.930 57.143 12.96 0.00 0.00 2.24
55 56 1.420430 GACACCGGGGATCAAGGATA 58.580 55.000 12.96 0.00 0.00 2.59
56 57 1.345715 GGACACCGGGGATCAAGGAT 61.346 60.000 12.96 0.00 0.00 3.24
57 58 1.993391 GGACACCGGGGATCAAGGA 60.993 63.158 12.96 0.00 0.00 3.36
58 59 1.995626 AGGACACCGGGGATCAAGG 60.996 63.158 12.96 0.00 0.00 3.61
59 60 1.221840 CAGGACACCGGGGATCAAG 59.778 63.158 12.96 0.00 0.00 3.02
60 61 1.229368 TCAGGACACCGGGGATCAA 60.229 57.895 12.96 0.00 0.00 2.57
61 62 1.685765 CTCAGGACACCGGGGATCA 60.686 63.158 12.96 0.00 0.00 2.92
62 63 0.396695 TACTCAGGACACCGGGGATC 60.397 60.000 12.96 3.81 0.00 3.36
63 64 0.686769 GTACTCAGGACACCGGGGAT 60.687 60.000 12.96 0.00 0.00 3.85
64 65 1.304713 GTACTCAGGACACCGGGGA 60.305 63.158 12.96 0.00 0.00 4.81
65 66 1.608336 TGTACTCAGGACACCGGGG 60.608 63.158 0.00 0.00 0.00 5.73
66 67 1.183030 TGTGTACTCAGGACACCGGG 61.183 60.000 18.10 0.00 45.43 5.73
67 68 0.038526 GTGTGTACTCAGGACACCGG 60.039 60.000 18.10 0.00 45.43 5.28
68 69 0.959553 AGTGTGTACTCAGGACACCG 59.040 55.000 18.10 0.00 45.43 4.94
78 79 1.533469 GGGCTGTCGGAGTGTGTACT 61.533 60.000 0.00 0.00 40.66 2.73
79 80 1.080025 GGGCTGTCGGAGTGTGTAC 60.080 63.158 0.00 0.00 0.00 2.90
80 81 1.228769 AGGGCTGTCGGAGTGTGTA 60.229 57.895 0.00 0.00 0.00 2.90
81 82 2.524394 AGGGCTGTCGGAGTGTGT 60.524 61.111 0.00 0.00 0.00 3.72
82 83 2.047844 CAGGGCTGTCGGAGTGTG 60.048 66.667 0.00 0.00 0.00 3.82
83 84 4.008933 GCAGGGCTGTCGGAGTGT 62.009 66.667 0.00 0.00 0.00 3.55
84 85 1.680522 ATAGCAGGGCTGTCGGAGTG 61.681 60.000 0.07 0.00 40.10 3.51
85 86 0.106167 TATAGCAGGGCTGTCGGAGT 60.106 55.000 0.07 0.00 40.10 3.85
86 87 1.261480 ATATAGCAGGGCTGTCGGAG 58.739 55.000 0.07 0.00 40.10 4.63
87 88 1.344438 CAATATAGCAGGGCTGTCGGA 59.656 52.381 0.07 0.00 40.10 4.55
88 89 1.800805 CAATATAGCAGGGCTGTCGG 58.199 55.000 0.07 0.00 40.10 4.79
89 90 1.151668 GCAATATAGCAGGGCTGTCG 58.848 55.000 0.07 0.00 40.10 4.35
90 91 2.260844 TGCAATATAGCAGGGCTGTC 57.739 50.000 0.07 0.00 40.10 3.51
99 100 1.267806 ACAAGCCGCATGCAATATAGC 59.732 47.619 19.57 9.84 44.83 2.97
100 101 2.919387 GCACAAGCCGCATGCAATATAG 60.919 50.000 19.57 5.02 44.83 1.31
101 102 1.001487 GCACAAGCCGCATGCAATATA 60.001 47.619 19.57 0.00 44.83 0.86
102 103 0.249155 GCACAAGCCGCATGCAATAT 60.249 50.000 19.57 0.00 44.83 1.28
103 104 1.139308 GCACAAGCCGCATGCAATA 59.861 52.632 19.57 0.00 44.83 1.90
104 105 1.314534 TAGCACAAGCCGCATGCAAT 61.315 50.000 19.57 0.00 44.83 3.56
105 106 1.522302 TTAGCACAAGCCGCATGCAA 61.522 50.000 19.57 0.00 44.83 4.08
106 107 1.314534 ATTAGCACAAGCCGCATGCA 61.315 50.000 19.57 0.00 44.83 3.96
107 108 0.868602 CATTAGCACAAGCCGCATGC 60.869 55.000 7.91 7.91 43.56 4.06
108 109 0.734309 TCATTAGCACAAGCCGCATG 59.266 50.000 0.00 0.00 43.56 4.06
109 110 1.462616 TTCATTAGCACAAGCCGCAT 58.537 45.000 0.00 0.00 43.56 4.73
110 111 1.401552 GATTCATTAGCACAAGCCGCA 59.598 47.619 0.00 0.00 43.56 5.69
111 112 1.595489 CGATTCATTAGCACAAGCCGC 60.595 52.381 0.00 0.00 43.56 6.53
112 113 1.665679 ACGATTCATTAGCACAAGCCG 59.334 47.619 0.00 0.00 43.56 5.52
113 114 3.764885 AACGATTCATTAGCACAAGCC 57.235 42.857 0.00 0.00 43.56 4.35
114 115 4.475944 ACAAACGATTCATTAGCACAAGC 58.524 39.130 0.00 0.00 42.56 4.01
115 116 6.991485 AAACAAACGATTCATTAGCACAAG 57.009 33.333 0.00 0.00 0.00 3.16
116 117 9.469807 AATAAAACAAACGATTCATTAGCACAA 57.530 25.926 0.00 0.00 0.00 3.33
117 118 9.469807 AAATAAAACAAACGATTCATTAGCACA 57.530 25.926 0.00 0.00 0.00 4.57
123 124 9.862585 GAGCAAAAATAAAACAAACGATTCATT 57.137 25.926 0.00 0.00 0.00 2.57
124 125 9.039870 TGAGCAAAAATAAAACAAACGATTCAT 57.960 25.926 0.00 0.00 0.00 2.57
125 126 8.412608 TGAGCAAAAATAAAACAAACGATTCA 57.587 26.923 0.00 0.00 0.00 2.57
126 127 9.142993 GTTGAGCAAAAATAAAACAAACGATTC 57.857 29.630 0.00 0.00 0.00 2.52
127 128 7.843686 CGTTGAGCAAAAATAAAACAAACGATT 59.156 29.630 0.00 0.00 0.00 3.34
128 129 7.334009 CGTTGAGCAAAAATAAAACAAACGAT 58.666 30.769 0.00 0.00 0.00 3.73
129 130 6.687655 CGTTGAGCAAAAATAAAACAAACGA 58.312 32.000 0.00 0.00 0.00 3.85
130 131 6.912398 CGTTGAGCAAAAATAAAACAAACG 57.088 33.333 0.00 0.00 0.00 3.60
147 148 9.305248 TAAGTTGACTTAGCTGTTTGCGTTGAG 62.305 40.741 0.00 0.00 40.93 3.02
148 149 7.615394 TAAGTTGACTTAGCTGTTTGCGTTGA 61.615 38.462 0.00 0.00 40.93 3.18
149 150 5.503357 TAAGTTGACTTAGCTGTTTGCGTTG 60.503 40.000 0.00 0.00 40.93 4.10
150 151 4.573201 TAAGTTGACTTAGCTGTTTGCGTT 59.427 37.500 0.00 0.00 40.93 4.84
151 152 4.124238 TAAGTTGACTTAGCTGTTTGCGT 58.876 39.130 0.00 0.00 40.93 5.24
152 153 4.725556 TAAGTTGACTTAGCTGTTTGCG 57.274 40.909 0.00 0.00 40.93 4.85
153 154 6.061231 AGTTAAGTTGACTTAGCTGTTTGC 57.939 37.500 16.28 0.00 44.61 3.68
159 160 7.667557 TGATACACAGTTAAGTTGACTTAGCT 58.332 34.615 12.64 12.64 46.36 3.32
160 161 7.884816 TGATACACAGTTAAGTTGACTTAGC 57.115 36.000 9.02 9.02 39.36 3.09
166 167 9.406828 GCGATATATGATACACAGTTAAGTTGA 57.593 33.333 0.00 0.00 0.00 3.18
167 168 9.191995 TGCGATATATGATACACAGTTAAGTTG 57.808 33.333 0.00 0.00 0.00 3.16
168 169 9.929180 ATGCGATATATGATACACAGTTAAGTT 57.071 29.630 0.00 0.00 0.00 2.66
171 172 9.498307 CGTATGCGATATATGATACACAGTTAA 57.502 33.333 0.00 0.00 41.33 2.01
172 173 8.671028 ACGTATGCGATATATGATACACAGTTA 58.329 33.333 11.07 0.00 42.00 2.24
173 174 7.535997 ACGTATGCGATATATGATACACAGTT 58.464 34.615 11.07 0.00 42.00 3.16
174 175 7.085052 ACGTATGCGATATATGATACACAGT 57.915 36.000 11.07 0.00 42.00 3.55
175 176 9.319223 GATACGTATGCGATATATGATACACAG 57.681 37.037 13.97 0.00 42.00 3.66
176 177 9.052759 AGATACGTATGCGATATATGATACACA 57.947 33.333 13.97 0.00 42.00 3.72
177 178 9.531412 GAGATACGTATGCGATATATGATACAC 57.469 37.037 13.97 0.00 42.00 2.90
178 179 8.433126 CGAGATACGTATGCGATATATGATACA 58.567 37.037 13.97 0.00 42.00 2.29
179 180 8.794281 CGAGATACGTATGCGATATATGATAC 57.206 38.462 13.97 0.00 42.00 2.24
197 198 4.631813 AGGCACAATTCAGAAACGAGATAC 59.368 41.667 0.00 0.00 0.00 2.24
198 199 4.631377 CAGGCACAATTCAGAAACGAGATA 59.369 41.667 0.00 0.00 0.00 1.98
199 200 3.438087 CAGGCACAATTCAGAAACGAGAT 59.562 43.478 0.00 0.00 0.00 2.75
200 201 2.807967 CAGGCACAATTCAGAAACGAGA 59.192 45.455 0.00 0.00 0.00 4.04
201 202 2.807967 TCAGGCACAATTCAGAAACGAG 59.192 45.455 0.00 0.00 0.00 4.18
202 203 2.844946 TCAGGCACAATTCAGAAACGA 58.155 42.857 0.00 0.00 0.00 3.85
203 204 3.558505 CTTCAGGCACAATTCAGAAACG 58.441 45.455 0.00 0.00 0.00 3.60
204 205 3.311966 GCTTCAGGCACAATTCAGAAAC 58.688 45.455 0.00 0.00 41.35 2.78
205 206 2.297033 GGCTTCAGGCACAATTCAGAAA 59.703 45.455 0.00 0.00 44.01 2.52
206 207 1.888512 GGCTTCAGGCACAATTCAGAA 59.111 47.619 0.00 0.00 44.01 3.02
207 208 1.202915 TGGCTTCAGGCACAATTCAGA 60.203 47.619 0.00 0.00 46.12 3.27
208 209 1.250328 TGGCTTCAGGCACAATTCAG 58.750 50.000 0.00 0.00 46.12 3.02
209 210 3.435846 TGGCTTCAGGCACAATTCA 57.564 47.368 0.00 0.00 46.12 2.57
217 218 3.869272 CGTGCGATGGCTTCAGGC 61.869 66.667 0.15 0.00 40.82 4.85
218 219 3.869272 GCGTGCGATGGCTTCAGG 61.869 66.667 0.15 0.00 40.82 3.86
219 220 1.985447 ATTGCGTGCGATGGCTTCAG 61.985 55.000 0.15 0.00 40.82 3.02
220 221 1.585267 AATTGCGTGCGATGGCTTCA 61.585 50.000 0.15 0.00 40.82 3.02
221 222 0.863119 GAATTGCGTGCGATGGCTTC 60.863 55.000 0.15 0.00 40.82 3.86
222 223 1.137404 GAATTGCGTGCGATGGCTT 59.863 52.632 0.15 0.00 40.82 4.35
223 224 1.585267 TTGAATTGCGTGCGATGGCT 61.585 50.000 0.15 0.00 40.82 4.75
224 225 0.526096 ATTGAATTGCGTGCGATGGC 60.526 50.000 0.00 0.00 40.52 4.40
225 226 1.847999 GAATTGAATTGCGTGCGATGG 59.152 47.619 0.00 0.00 0.00 3.51
230 231 2.784505 TGATCGAATTGAATTGCGTGC 58.215 42.857 0.00 0.00 0.00 5.34
234 235 6.038356 ACATCCTTTGATCGAATTGAATTGC 58.962 36.000 0.00 0.00 0.00 3.56
304 306 5.969435 CGATGTGTAGTAGCTTCGTCAATTA 59.031 40.000 0.00 0.00 0.00 1.40
405 2099 3.181503 CGCCGATGTGTAGTACAGTACTT 60.182 47.826 18.56 0.00 43.80 2.24
412 2106 2.574222 GCGCGCCGATGTGTAGTAC 61.574 63.158 23.24 0.00 0.00 2.73
413 2107 2.278336 GCGCGCCGATGTGTAGTA 60.278 61.111 23.24 0.00 0.00 1.82
448 2142 0.386858 CGTCGGTCAGTCGTGTCATT 60.387 55.000 0.00 0.00 0.00 2.57
517 2211 9.533831 AGTATTATTGACACCCAGATTCTTTTT 57.466 29.630 0.00 0.00 0.00 1.94
519 2213 7.775561 GGAGTATTATTGACACCCAGATTCTTT 59.224 37.037 0.00 0.00 0.00 2.52
520 2214 7.283329 GGAGTATTATTGACACCCAGATTCTT 58.717 38.462 0.00 0.00 0.00 2.52
521 2215 6.463049 CGGAGTATTATTGACACCCAGATTCT 60.463 42.308 0.00 0.00 0.00 2.40
671 2370 1.306141 TTCGATGGGCAGGGAGAGT 60.306 57.895 0.00 0.00 0.00 3.24
710 2410 4.870021 AGTATTTTCCAAGAGAGGGCAT 57.130 40.909 0.00 0.00 0.00 4.40
785 2608 4.389890 TGCACTCTGTTTCTGCAAAAAT 57.610 36.364 0.00 0.00 37.97 1.82
800 2623 6.034591 CAGATGATTTGATTTCCTTGCACTC 58.965 40.000 0.00 0.00 0.00 3.51
819 2642 0.383590 ACCGATCGAGCACTCAGATG 59.616 55.000 18.66 0.00 0.00 2.90
850 2682 6.063404 GCTTCTCTAGGTCTAGGCTAACTAA 58.937 44.000 5.31 0.00 34.06 2.24
857 2689 2.074729 TGGCTTCTCTAGGTCTAGGC 57.925 55.000 5.31 0.00 34.06 3.93
879 2711 7.382488 ACTCGTGTATTTATACTGCATAAGCTG 59.618 37.037 0.00 0.00 44.36 4.24
933 2765 4.258702 ACTATCCGTGAATGTATCAGCC 57.741 45.455 0.00 0.00 39.19 4.85
1025 2857 1.798446 CGAGAGCTAAGAGCAGCAGTG 60.798 57.143 0.64 0.00 45.56 3.66
1027 2859 3.255017 CGAGAGCTAAGAGCAGCAG 57.745 57.895 0.64 0.00 45.56 4.24
1071 2903 4.742201 TCCTGCGGCGAGTTCTGC 62.742 66.667 12.98 0.00 38.78 4.26
1302 3140 2.030701 GTCGTAGTACTGCTTCTCCGAG 59.969 54.545 5.39 0.00 0.00 4.63
1580 3427 4.537135 AGTGTCACAATCTTACCACGAT 57.463 40.909 5.62 0.00 0.00 3.73
1586 3433 5.347907 CCGGTCTAAAGTGTCACAATCTTAC 59.652 44.000 5.62 0.00 0.00 2.34
1639 5926 8.998377 CATGAATCGTAACACATTATCCCATTA 58.002 33.333 0.00 0.00 0.00 1.90
1641 5928 6.998074 ACATGAATCGTAACACATTATCCCAT 59.002 34.615 0.00 0.00 0.00 4.00
1642 5929 6.353323 ACATGAATCGTAACACATTATCCCA 58.647 36.000 0.00 0.00 0.00 4.37
1644 5931 8.009974 GCTTACATGAATCGTAACACATTATCC 58.990 37.037 0.00 0.00 0.00 2.59
1645 5932 8.765219 AGCTTACATGAATCGTAACACATTATC 58.235 33.333 0.00 0.00 0.00 1.75
1646 5933 8.551205 CAGCTTACATGAATCGTAACACATTAT 58.449 33.333 0.00 0.00 0.00 1.28
1648 5935 6.371548 ACAGCTTACATGAATCGTAACACATT 59.628 34.615 0.00 0.00 0.00 2.71
1649 5936 5.874810 ACAGCTTACATGAATCGTAACACAT 59.125 36.000 0.00 0.00 0.00 3.21
1650 5937 5.234752 ACAGCTTACATGAATCGTAACACA 58.765 37.500 0.00 0.00 0.00 3.72
1651 5938 5.779806 ACAGCTTACATGAATCGTAACAC 57.220 39.130 0.00 0.00 0.00 3.32
1670 5957 0.518636 AAGCACGTGCAAGCATACAG 59.481 50.000 39.21 0.00 45.16 2.74
1717 6004 9.403583 TCACCCCTGATAATAAAACTGTATTTC 57.596 33.333 0.00 0.00 0.00 2.17
1898 6185 8.476064 TTGGTGCATGTAATCCATAATTGTAT 57.524 30.769 0.00 0.00 30.71 2.29
1902 6189 7.716123 CCAAATTGGTGCATGTAATCCATAATT 59.284 33.333 3.34 0.00 31.35 1.40
1904 6191 6.382282 TCCAAATTGGTGCATGTAATCCATAA 59.618 34.615 12.28 0.00 39.03 1.90
1938 6225 1.038130 AGTGTTCCTCTCGATCCCCG 61.038 60.000 0.00 0.00 40.25 5.73
1976 6263 1.898574 AAGCTCAACGCCAAGGTGG 60.899 57.895 4.49 0.00 41.55 4.61
1977 6264 1.283793 CAAGCTCAACGCCAAGGTG 59.716 57.895 0.00 0.00 40.39 4.00
1978 6265 1.152963 ACAAGCTCAACGCCAAGGT 60.153 52.632 0.00 0.00 40.39 3.50
1979 6266 1.283793 CACAAGCTCAACGCCAAGG 59.716 57.895 0.00 0.00 40.39 3.61
1980 6267 1.283793 CCACAAGCTCAACGCCAAG 59.716 57.895 0.00 0.00 40.39 3.61
1981 6268 1.453015 ACCACAAGCTCAACGCCAA 60.453 52.632 0.00 0.00 40.39 4.52
1982 6269 2.186160 CACCACAAGCTCAACGCCA 61.186 57.895 0.00 0.00 40.39 5.69
1983 6270 2.639286 CACCACAAGCTCAACGCC 59.361 61.111 0.00 0.00 40.39 5.68
1984 6271 2.050985 GCACCACAAGCTCAACGC 60.051 61.111 0.00 0.00 39.57 4.84
1985 6272 1.845809 GAGGCACCACAAGCTCAACG 61.846 60.000 0.00 0.00 0.00 4.10
1987 6274 0.819259 GTGAGGCACCACAAGCTCAA 60.819 55.000 5.36 0.00 37.04 3.02
1995 6282 3.566261 CGTCATGTGAGGCACCAC 58.434 61.111 0.00 3.51 37.55 4.16
2001 6288 2.821366 GGCCAGCGTCATGTGAGG 60.821 66.667 0.00 0.00 0.00 3.86
2002 6289 2.104859 CAGGCCAGCGTCATGTGAG 61.105 63.158 5.01 0.00 0.00 3.51
2003 6290 2.046988 CAGGCCAGCGTCATGTGA 60.047 61.111 5.01 0.00 0.00 3.58
2004 6291 3.129502 CCAGGCCAGCGTCATGTG 61.130 66.667 5.01 0.00 0.00 3.21
2016 6303 4.148825 ATCCGTCTCACGCCAGGC 62.149 66.667 0.00 0.00 40.91 4.85
2017 6304 2.105128 GATCCGTCTCACGCCAGG 59.895 66.667 0.00 0.00 40.91 4.45
2018 6305 2.278206 CGATCCGTCTCACGCCAG 60.278 66.667 0.00 0.00 40.91 4.85
2021 6308 4.194720 AGCCGATCCGTCTCACGC 62.195 66.667 0.00 0.00 40.91 5.34
2022 6309 2.024871 GAGCCGATCCGTCTCACG 59.975 66.667 0.00 0.00 42.11 4.35
2024 6311 3.209812 CCGAGCCGATCCGTCTCA 61.210 66.667 0.00 0.00 0.00 3.27
2026 6313 2.902846 CTCCGAGCCGATCCGTCT 60.903 66.667 0.00 0.00 0.00 4.18
2028 6315 3.210528 GTCTCCGAGCCGATCCGT 61.211 66.667 0.00 0.00 0.00 4.69
2029 6316 3.187699 CTGTCTCCGAGCCGATCCG 62.188 68.421 0.00 0.00 0.00 4.18
2030 6317 2.725008 CTGTCTCCGAGCCGATCC 59.275 66.667 0.00 0.00 0.00 3.36
2031 6318 2.122167 ACCTGTCTCCGAGCCGATC 61.122 63.158 0.00 0.00 0.00 3.69
2032 6319 2.043852 ACCTGTCTCCGAGCCGAT 60.044 61.111 0.00 0.00 0.00 4.18
2033 6320 3.062466 CACCTGTCTCCGAGCCGA 61.062 66.667 0.00 0.00 0.00 5.54
2034 6321 3.374402 ACACCTGTCTCCGAGCCG 61.374 66.667 0.00 0.00 0.00 5.52
2035 6322 2.262915 CACACCTGTCTCCGAGCC 59.737 66.667 0.00 0.00 0.00 4.70
2036 6323 2.262915 CCACACCTGTCTCCGAGC 59.737 66.667 0.00 0.00 0.00 5.03
2037 6324 1.587054 GACCACACCTGTCTCCGAG 59.413 63.158 0.00 0.00 0.00 4.63
2038 6325 2.265904 CGACCACACCTGTCTCCGA 61.266 63.158 0.00 0.00 0.00 4.55
2039 6326 2.258591 CGACCACACCTGTCTCCG 59.741 66.667 0.00 0.00 0.00 4.63
2040 6327 2.048127 GCGACCACACCTGTCTCC 60.048 66.667 0.00 0.00 0.00 3.71
2041 6328 2.048127 GGCGACCACACCTGTCTC 60.048 66.667 0.00 0.00 0.00 3.36
2042 6329 3.991051 CGGCGACCACACCTGTCT 61.991 66.667 0.00 0.00 0.00 3.41
2043 6330 4.295119 ACGGCGACCACACCTGTC 62.295 66.667 16.62 0.00 0.00 3.51
2045 6332 4.602259 ACACGGCGACCACACCTG 62.602 66.667 16.62 0.05 0.00 4.00
2046 6333 4.295119 GACACGGCGACCACACCT 62.295 66.667 16.62 0.00 0.00 4.00
2047 6334 4.595538 TGACACGGCGACCACACC 62.596 66.667 16.62 0.00 0.00 4.16
2049 6336 4.293648 CCTGACACGGCGACCACA 62.294 66.667 16.62 7.26 0.00 4.17
2050 6337 4.295119 ACCTGACACGGCGACCAC 62.295 66.667 16.62 2.36 0.00 4.16
2051 6338 3.986006 GACCTGACACGGCGACCA 61.986 66.667 16.62 7.19 0.00 4.02
2052 6339 3.222354 AAGACCTGACACGGCGACC 62.222 63.158 16.62 2.05 0.00 4.79
2053 6340 1.733399 GAAGACCTGACACGGCGAC 60.733 63.158 16.62 5.15 0.00 5.19
2054 6341 2.649034 GAAGACCTGACACGGCGA 59.351 61.111 16.62 0.00 0.00 5.54
2055 6342 2.432628 GGAAGACCTGACACGGCG 60.433 66.667 4.80 4.80 0.00 6.46
2056 6343 3.060866 AGGAAGACCTGACACGGC 58.939 61.111 0.00 0.00 45.92 5.68
2065 6352 2.467826 GCAGCATCGCAGGAAGACC 61.468 63.158 0.00 0.00 0.00 3.85
2066 6353 1.449246 AGCAGCATCGCAGGAAGAC 60.449 57.895 0.00 0.00 0.00 3.01
2067 6354 1.449070 CAGCAGCATCGCAGGAAGA 60.449 57.895 0.00 0.00 0.00 2.87
2068 6355 1.703438 GACAGCAGCATCGCAGGAAG 61.703 60.000 0.00 0.00 0.00 3.46
2069 6356 1.742880 GACAGCAGCATCGCAGGAA 60.743 57.895 0.00 0.00 0.00 3.36
2072 6359 2.461945 CCAGACAGCAGCATCGCAG 61.462 63.158 0.00 0.00 0.00 5.18
2073 6360 2.435410 CCAGACAGCAGCATCGCA 60.435 61.111 0.00 0.00 0.00 5.10
2074 6361 2.435586 ACCAGACAGCAGCATCGC 60.436 61.111 0.00 0.00 0.00 4.58
2075 6362 2.104859 CCACCAGACAGCAGCATCG 61.105 63.158 0.00 0.00 0.00 3.84
2076 6363 1.002868 ACCACCAGACAGCAGCATC 60.003 57.895 0.00 0.00 0.00 3.91
2078 6365 1.981951 TTCACCACCAGACAGCAGCA 61.982 55.000 0.00 0.00 0.00 4.41
2079 6366 1.227943 TTCACCACCAGACAGCAGC 60.228 57.895 0.00 0.00 0.00 5.25
2080 6367 0.107456 AGTTCACCACCAGACAGCAG 59.893 55.000 0.00 0.00 0.00 4.24
2082 6369 1.344763 AGTAGTTCACCACCAGACAGC 59.655 52.381 0.00 0.00 0.00 4.40
2083 6370 2.868044 GCAGTAGTTCACCACCAGACAG 60.868 54.545 0.00 0.00 0.00 3.51
2084 6371 1.070134 GCAGTAGTTCACCACCAGACA 59.930 52.381 0.00 0.00 0.00 3.41
2085 6372 1.070134 TGCAGTAGTTCACCACCAGAC 59.930 52.381 0.00 0.00 0.00 3.51
2086 6373 1.070134 GTGCAGTAGTTCACCACCAGA 59.930 52.381 0.00 0.00 0.00 3.86
2087 6374 1.070758 AGTGCAGTAGTTCACCACCAG 59.929 52.381 0.00 0.00 33.90 4.00
2088 6375 1.070134 GAGTGCAGTAGTTCACCACCA 59.930 52.381 0.00 0.00 33.90 4.17
2089 6376 1.797025 GAGTGCAGTAGTTCACCACC 58.203 55.000 0.00 0.00 33.90 4.61
2090 6377 1.419374 CGAGTGCAGTAGTTCACCAC 58.581 55.000 0.00 0.00 33.90 4.16
2092 6379 0.389948 CCCGAGTGCAGTAGTTCACC 60.390 60.000 0.00 0.00 33.90 4.02
2093 6380 0.601558 TCCCGAGTGCAGTAGTTCAC 59.398 55.000 0.00 0.00 0.00 3.18
2095 6382 1.000506 TGTTCCCGAGTGCAGTAGTTC 59.999 52.381 0.00 0.00 0.00 3.01
2096 6383 1.045407 TGTTCCCGAGTGCAGTAGTT 58.955 50.000 0.00 0.00 0.00 2.24
2097 6384 1.000955 CTTGTTCCCGAGTGCAGTAGT 59.999 52.381 0.00 0.00 0.00 2.73
2098 6385 1.000955 ACTTGTTCCCGAGTGCAGTAG 59.999 52.381 0.00 0.00 33.85 2.57
2099 6386 1.045407 ACTTGTTCCCGAGTGCAGTA 58.955 50.000 0.00 0.00 33.85 2.74
2100 6387 0.180406 AACTTGTTCCCGAGTGCAGT 59.820 50.000 0.00 0.00 35.40 4.40
2101 6388 0.588252 CAACTTGTTCCCGAGTGCAG 59.412 55.000 0.00 0.00 35.40 4.41
2102 6389 0.179234 TCAACTTGTTCCCGAGTGCA 59.821 50.000 0.00 0.00 35.40 4.57
2103 6390 1.464997 GATCAACTTGTTCCCGAGTGC 59.535 52.381 0.00 0.00 35.40 4.40
2104 6391 2.076863 GGATCAACTTGTTCCCGAGTG 58.923 52.381 7.44 0.00 35.40 3.51
2105 6392 1.697432 TGGATCAACTTGTTCCCGAGT 59.303 47.619 14.01 0.00 35.81 4.18
2107 6394 2.778299 CTTGGATCAACTTGTTCCCGA 58.222 47.619 14.01 4.84 35.81 5.14
2108 6395 1.200020 GCTTGGATCAACTTGTTCCCG 59.800 52.381 14.01 8.05 35.81 5.14
2110 6397 2.229784 CCAGCTTGGATCAACTTGTTCC 59.770 50.000 10.82 10.82 40.96 3.62
2111 6398 2.229784 CCCAGCTTGGATCAACTTGTTC 59.770 50.000 0.00 0.00 40.96 3.18
2113 6400 1.915141 CCCAGCTTGGATCAACTTGT 58.085 50.000 0.00 0.00 40.96 3.16
2114 6401 0.529378 GCCCAGCTTGGATCAACTTG 59.471 55.000 8.31 0.00 40.96 3.16
2115 6402 0.407139 AGCCCAGCTTGGATCAACTT 59.593 50.000 8.31 0.00 40.96 2.66
2116 6403 0.323178 CAGCCCAGCTTGGATCAACT 60.323 55.000 8.31 0.00 40.96 3.16
2117 6404 1.318158 CCAGCCCAGCTTGGATCAAC 61.318 60.000 8.31 0.00 40.96 3.18
2118 6405 1.000521 CCAGCCCAGCTTGGATCAA 60.001 57.895 8.31 0.00 40.96 2.57
2119 6406 2.679092 CCAGCCCAGCTTGGATCA 59.321 61.111 8.31 0.00 40.96 2.92
2120 6407 2.832201 GCCAGCCCAGCTTGGATC 60.832 66.667 8.31 0.00 40.96 3.36
2121 6408 3.228243 TTGCCAGCCCAGCTTGGAT 62.228 57.895 8.31 0.00 40.96 3.41
2122 6409 3.873679 CTTGCCAGCCCAGCTTGGA 62.874 63.158 8.31 0.00 40.96 3.53
2123 6410 3.379445 CTTGCCAGCCCAGCTTGG 61.379 66.667 0.00 0.00 36.40 3.61
2124 6411 4.065281 GCTTGCCAGCCCAGCTTG 62.065 66.667 0.00 0.00 40.61 4.01
2133 6420 4.712425 GGTTGCTGCGCTTGCCAG 62.712 66.667 19.73 5.49 38.03 4.85
2135 6422 2.976692 AAAAGGTTGCTGCGCTTGCC 62.977 55.000 19.73 10.32 38.03 4.52
2136 6423 1.153597 AAAAAGGTTGCTGCGCTTGC 61.154 50.000 9.73 14.07 39.78 4.01
2137 6424 2.976271 AAAAAGGTTGCTGCGCTTG 58.024 47.368 9.73 2.28 0.00 4.01
2154 6441 4.519540 GCAGAAGGTGGCTATTCAAAAA 57.480 40.909 0.00 0.00 0.00 1.94
2165 6452 0.804989 GTTTCATCGGCAGAAGGTGG 59.195 55.000 0.00 0.00 0.00 4.61
2166 6453 0.804989 GGTTTCATCGGCAGAAGGTG 59.195 55.000 0.00 0.00 0.00 4.00
2167 6454 0.322546 GGGTTTCATCGGCAGAAGGT 60.323 55.000 0.00 0.00 0.00 3.50
2168 6455 0.322456 TGGGTTTCATCGGCAGAAGG 60.322 55.000 0.00 0.00 0.00 3.46
2169 6456 1.089920 CTGGGTTTCATCGGCAGAAG 58.910 55.000 0.00 0.00 0.00 2.85
2170 6457 0.690192 TCTGGGTTTCATCGGCAGAA 59.310 50.000 0.00 0.00 0.00 3.02
2171 6458 0.911769 ATCTGGGTTTCATCGGCAGA 59.088 50.000 0.00 0.00 0.00 4.26
2172 6459 1.303309 GATCTGGGTTTCATCGGCAG 58.697 55.000 0.00 0.00 0.00 4.85
2173 6460 0.617935 TGATCTGGGTTTCATCGGCA 59.382 50.000 0.00 0.00 0.00 5.69
2174 6461 1.303309 CTGATCTGGGTTTCATCGGC 58.697 55.000 0.00 0.00 0.00 5.54
2175 6462 1.303309 GCTGATCTGGGTTTCATCGG 58.697 55.000 1.46 0.00 0.00 4.18
2176 6463 1.303309 GGCTGATCTGGGTTTCATCG 58.697 55.000 1.46 0.00 0.00 3.84
2177 6464 2.425143 TGGCTGATCTGGGTTTCATC 57.575 50.000 1.46 0.00 0.00 2.92
2178 6465 2.622452 CCTTGGCTGATCTGGGTTTCAT 60.622 50.000 1.46 0.00 0.00 2.57
2179 6466 1.272092 CCTTGGCTGATCTGGGTTTCA 60.272 52.381 1.46 0.00 0.00 2.69
2180 6467 1.272147 ACCTTGGCTGATCTGGGTTTC 60.272 52.381 1.46 0.00 0.00 2.78
2181 6468 0.779997 ACCTTGGCTGATCTGGGTTT 59.220 50.000 1.46 0.00 0.00 3.27
2182 6469 0.038744 CACCTTGGCTGATCTGGGTT 59.961 55.000 1.46 0.00 0.00 4.11
2183 6470 1.687612 CACCTTGGCTGATCTGGGT 59.312 57.895 1.46 0.00 0.00 4.51
2184 6471 1.751927 GCACCTTGGCTGATCTGGG 60.752 63.158 1.46 0.00 0.00 4.45
2185 6472 1.001764 TGCACCTTGGCTGATCTGG 60.002 57.895 1.46 0.00 34.04 3.86
2186 6473 0.607217 TGTGCACCTTGGCTGATCTG 60.607 55.000 15.69 0.00 34.04 2.90
2187 6474 0.607489 GTGTGCACCTTGGCTGATCT 60.607 55.000 15.69 0.00 34.04 2.75
2188 6475 1.878775 GTGTGCACCTTGGCTGATC 59.121 57.895 15.69 0.00 34.04 2.92
2189 6476 1.968017 CGTGTGCACCTTGGCTGAT 60.968 57.895 15.69 0.00 34.04 2.90
2190 6477 2.591429 CGTGTGCACCTTGGCTGA 60.591 61.111 15.69 0.00 34.04 4.26
2191 6478 2.896801 GACGTGTGCACCTTGGCTG 61.897 63.158 15.69 0.00 34.04 4.85
2192 6479 2.591715 GACGTGTGCACCTTGGCT 60.592 61.111 15.69 0.00 34.04 4.75
2193 6480 2.477176 TTGACGTGTGCACCTTGGC 61.477 57.895 15.69 6.68 0.00 4.52
2194 6481 1.355210 GTTGACGTGTGCACCTTGG 59.645 57.895 15.69 3.13 0.00 3.61
2195 6482 1.011242 CGTTGACGTGTGCACCTTG 60.011 57.895 15.69 6.45 34.11 3.61
2196 6483 0.741574 TTCGTTGACGTGTGCACCTT 60.742 50.000 15.69 0.00 40.80 3.50
2197 6484 1.153529 TTCGTTGACGTGTGCACCT 60.154 52.632 15.69 0.00 40.80 4.00
2198 6485 1.011574 GTTCGTTGACGTGTGCACC 60.012 57.895 15.69 4.74 40.80 5.01
2199 6486 1.011574 GGTTCGTTGACGTGTGCAC 60.012 57.895 10.75 10.75 40.80 4.57
2200 6487 0.812014 ATGGTTCGTTGACGTGTGCA 60.812 50.000 0.00 0.00 40.80 4.57
2201 6488 0.384230 CATGGTTCGTTGACGTGTGC 60.384 55.000 0.00 0.00 40.80 4.57
2202 6489 1.213491 TCATGGTTCGTTGACGTGTG 58.787 50.000 0.00 0.00 40.80 3.82
2203 6490 2.163818 ATCATGGTTCGTTGACGTGT 57.836 45.000 0.00 0.00 40.80 4.49
2204 6491 3.678072 AGTTATCATGGTTCGTTGACGTG 59.322 43.478 0.00 0.00 40.80 4.49
2205 6492 3.921677 AGTTATCATGGTTCGTTGACGT 58.078 40.909 3.25 0.00 40.80 4.34
2206 6493 4.490319 CGAAGTTATCATGGTTCGTTGACG 60.490 45.833 0.00 0.00 37.58 4.35
2207 6494 4.624024 TCGAAGTTATCATGGTTCGTTGAC 59.376 41.667 11.82 0.00 41.90 3.18
2208 6495 4.624024 GTCGAAGTTATCATGGTTCGTTGA 59.376 41.667 11.82 1.09 41.90 3.18
2209 6496 4.625742 AGTCGAAGTTATCATGGTTCGTTG 59.374 41.667 11.82 0.00 41.90 4.10
2210 6497 4.625742 CAGTCGAAGTTATCATGGTTCGTT 59.374 41.667 11.82 0.00 41.90 3.85
2211 6498 4.174009 CAGTCGAAGTTATCATGGTTCGT 58.826 43.478 11.82 0.00 41.90 3.85
2212 6499 3.000322 GCAGTCGAAGTTATCATGGTTCG 60.000 47.826 0.00 1.19 42.45 3.95
2213 6500 3.000322 CGCAGTCGAAGTTATCATGGTTC 60.000 47.826 0.00 0.00 38.10 3.62
2214 6501 2.930040 CGCAGTCGAAGTTATCATGGTT 59.070 45.455 0.00 0.00 38.10 3.67
2215 6502 2.094182 ACGCAGTCGAAGTTATCATGGT 60.094 45.455 0.00 0.00 29.74 3.55
2216 6503 2.540515 ACGCAGTCGAAGTTATCATGG 58.459 47.619 0.00 0.00 29.74 3.66
2231 6518 2.505777 CGAGCACTCAGGACGCAG 60.506 66.667 0.00 0.00 0.00 5.18
2232 6519 3.268965 GACGAGCACTCAGGACGCA 62.269 63.158 0.00 0.00 0.00 5.24
2233 6520 2.505118 GACGAGCACTCAGGACGC 60.505 66.667 0.00 0.00 0.00 5.19
2234 6521 1.004277 GTTGACGAGCACTCAGGACG 61.004 60.000 0.00 0.00 0.00 4.79
2235 6522 1.004277 CGTTGACGAGCACTCAGGAC 61.004 60.000 0.00 0.00 43.02 3.85
2236 6523 1.285950 CGTTGACGAGCACTCAGGA 59.714 57.895 0.00 0.00 43.02 3.86
2237 6524 1.007271 ACGTTGACGAGCACTCAGG 60.007 57.895 10.87 0.00 43.02 3.86
2238 6525 2.136649 CACGTTGACGAGCACTCAG 58.863 57.895 10.87 0.00 43.02 3.35
2239 6526 4.319249 CACGTTGACGAGCACTCA 57.681 55.556 10.87 0.00 43.02 3.41
2322 6609 4.898861 AGAGATATCAGTCTTGGGACCTTC 59.101 45.833 5.32 0.00 43.05 3.46
2333 6620 5.153513 GCAGATGAACGAGAGATATCAGTC 58.846 45.833 5.32 0.00 0.00 3.51
2337 6624 2.914214 GCGCAGATGAACGAGAGATATC 59.086 50.000 0.30 0.00 0.00 1.63
2351 6638 0.179018 GTAAATGGGGAGGCGCAGAT 60.179 55.000 10.83 0.00 0.00 2.90
2455 7026 9.796120 CTTGGTAGTTTTTGAAACACTGAAATA 57.204 29.630 6.96 0.00 0.00 1.40
2456 7027 7.763985 CCTTGGTAGTTTTTGAAACACTGAAAT 59.236 33.333 6.96 0.00 0.00 2.17
2457 7028 7.093992 CCTTGGTAGTTTTTGAAACACTGAAA 58.906 34.615 6.96 0.00 0.00 2.69
2458 7029 6.626302 CCTTGGTAGTTTTTGAAACACTGAA 58.374 36.000 6.96 0.00 0.00 3.02
2460 7031 4.803613 GCCTTGGTAGTTTTTGAAACACTG 59.196 41.667 6.96 0.00 0.00 3.66
2461 7032 4.142026 GGCCTTGGTAGTTTTTGAAACACT 60.142 41.667 2.07 2.07 0.00 3.55
2462 7033 4.116961 GGCCTTGGTAGTTTTTGAAACAC 58.883 43.478 0.00 3.07 0.00 3.32
2463 7034 4.027437 AGGCCTTGGTAGTTTTTGAAACA 58.973 39.130 0.00 0.00 0.00 2.83
2464 7035 4.500887 GGAGGCCTTGGTAGTTTTTGAAAC 60.501 45.833 6.77 0.00 0.00 2.78
2466 7037 3.227614 GGAGGCCTTGGTAGTTTTTGAA 58.772 45.455 6.77 0.00 0.00 2.69
2468 7039 2.296190 GTGGAGGCCTTGGTAGTTTTTG 59.704 50.000 6.77 0.00 0.00 2.44
2469 7040 2.177016 AGTGGAGGCCTTGGTAGTTTTT 59.823 45.455 6.77 0.00 0.00 1.94
2470 7041 1.780919 AGTGGAGGCCTTGGTAGTTTT 59.219 47.619 6.77 0.00 0.00 2.43
2472 7043 2.337359 TAGTGGAGGCCTTGGTAGTT 57.663 50.000 6.77 0.00 0.00 2.24
2473 7044 2.119495 CATAGTGGAGGCCTTGGTAGT 58.881 52.381 6.77 0.00 0.00 2.73
2474 7045 1.417890 CCATAGTGGAGGCCTTGGTAG 59.582 57.143 6.77 0.00 40.96 3.18
2483 7054 1.152881 GCTTGGGCCATAGTGGAGG 60.153 63.158 7.26 0.00 40.96 4.30
2484 7055 4.567318 GCTTGGGCCATAGTGGAG 57.433 61.111 7.26 0.64 40.96 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.