Multiple sequence alignment - TraesCS5D01G446800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G446800 chr5D 100.000 2143 0 0 1 2143 496955957 496958099 0.000000e+00 3958.0
1 TraesCS5D01G446800 chr5D 87.654 567 53 12 984 1538 497103947 497104508 0.000000e+00 643.0
2 TraesCS5D01G446800 chr5D 87.862 552 54 8 984 1523 497038477 497039027 9.760000e-179 636.0
3 TraesCS5D01G446800 chr5D 100.000 314 0 0 2188 2501 496958144 496958457 4.640000e-162 580.0
4 TraesCS5D01G446800 chr5D 99.045 314 3 0 2188 2501 73730347 73730660 4.670000e-157 564.0
5 TraesCS5D01G446800 chr5D 99.045 314 3 0 2188 2501 483774188 483774501 4.670000e-157 564.0
6 TraesCS5D01G446800 chr5D 92.933 283 15 4 1865 2143 547937629 547937910 8.330000e-110 407.0
7 TraesCS5D01G446800 chr5D 84.729 203 15 11 316 510 496977927 496978121 3.280000e-44 189.0
8 TraesCS5D01G446800 chr5D 87.143 70 8 1 1489 1558 497366390 497366322 7.420000e-11 78.7
9 TraesCS5D01G446800 chr5D 100.000 33 0 0 2111 2143 238923096 238923128 7.470000e-06 62.1
10 TraesCS5D01G446800 chr5A 89.318 1657 131 25 230 1862 621022635 621024269 0.000000e+00 2037.0
11 TraesCS5D01G446800 chr5A 90.821 207 17 1 1 207 621022338 621022542 2.450000e-70 276.0
12 TraesCS5D01G446800 chr5B 91.362 1065 52 19 742 1769 615736302 615737363 0.000000e+00 1421.0
13 TraesCS5D01G446800 chr5B 87.956 548 53 8 984 1523 616310575 616311117 3.510000e-178 634.0
14 TraesCS5D01G446800 chr5B 89.806 206 11 7 422 617 615735961 615736166 3.190000e-64 255.0
15 TraesCS5D01G446800 chr5B 87.255 204 21 1 1 204 615733668 615733866 6.960000e-56 228.0
16 TraesCS5D01G446800 chr5B 89.655 174 18 0 230 403 615733965 615734138 3.240000e-54 222.0
17 TraesCS5D01G446800 chr5B 95.349 43 1 1 684 726 615736260 615736301 1.610000e-07 67.6
18 TraesCS5D01G446800 chrUn 88.545 550 50 9 997 1538 335555745 335555201 0.000000e+00 654.0
19 TraesCS5D01G446800 chrUn 88.182 550 52 9 997 1538 68274061 68273517 0.000000e+00 643.0
20 TraesCS5D01G446800 chrUn 87.654 567 53 12 984 1538 302517542 302518103 0.000000e+00 643.0
21 TraesCS5D01G446800 chrUn 87.654 567 53 12 984 1538 345125686 345126247 0.000000e+00 643.0
22 TraesCS5D01G446800 chrUn 92.580 283 16 4 1865 2143 111638353 111638634 3.870000e-108 401.0
23 TraesCS5D01G446800 chrUn 90.210 286 23 4 1862 2143 68511535 68511819 3.930000e-98 368.0
24 TraesCS5D01G446800 chrUn 74.492 443 88 19 1067 1501 83929624 83929199 4.280000e-38 169.0
25 TraesCS5D01G446800 chrUn 74.940 419 80 19 1067 1477 84035240 84034839 4.280000e-38 169.0
26 TraesCS5D01G446800 chr6D 99.357 311 2 0 2191 2501 8536768 8536458 4.670000e-157 564.0
27 TraesCS5D01G446800 chr6D 99.357 311 2 0 2191 2501 455551576 455551266 4.670000e-157 564.0
28 TraesCS5D01G446800 chr6D 90.941 287 21 4 1851 2133 301754249 301753964 5.050000e-102 381.0
29 TraesCS5D01G446800 chr6D 91.135 282 21 4 1865 2143 296364157 296363877 1.820000e-101 379.0
30 TraesCS5D01G446800 chr6D 88.339 283 19 10 1865 2143 34688303 34688575 6.670000e-86 327.0
31 TraesCS5D01G446800 chr3D 99.357 311 2 0 2191 2501 613658751 613658441 4.670000e-157 564.0
32 TraesCS5D01G446800 chr1D 99.357 311 2 0 2191 2501 16256379 16256069 4.670000e-157 564.0
33 TraesCS5D01G446800 chr1D 99.357 311 2 0 2191 2501 66264462 66264152 4.670000e-157 564.0
34 TraesCS5D01G446800 chr1D 99.045 314 3 0 2188 2501 334765484 334765797 4.670000e-157 564.0
35 TraesCS5D01G446800 chr1D 99.045 314 3 0 2188 2501 470754859 470755172 4.670000e-157 564.0
36 TraesCS5D01G446800 chr1D 92.334 287 17 4 1861 2143 428222336 428222621 1.080000e-108 403.0
37 TraesCS5D01G446800 chr1D 94.672 244 11 2 1855 2097 428167938 428168180 6.530000e-101 377.0
38 TraesCS5D01G446800 chr1D 100.000 33 0 0 2111 2143 491025124 491025092 7.470000e-06 62.1
39 TraesCS5D01G446800 chr7D 92.069 290 18 4 1858 2143 67684179 67684467 1.080000e-108 403.0
40 TraesCS5D01G446800 chr7D 91.103 281 21 3 1865 2143 609302027 609301749 6.530000e-101 377.0
41 TraesCS5D01G446800 chr2D 92.226 283 16 4 1865 2143 130755590 130755310 1.800000e-106 396.0
42 TraesCS5D01G446800 chr4D 100.000 33 0 0 2111 2143 5046603 5046635 7.470000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G446800 chr5D 496955957 496958457 2500 False 2269.00 3958 100.0000 1 2501 2 chr5D.!!$F8 2500
1 TraesCS5D01G446800 chr5D 497103947 497104508 561 False 643.00 643 87.6540 984 1538 1 chr5D.!!$F6 554
2 TraesCS5D01G446800 chr5D 497038477 497039027 550 False 636.00 636 87.8620 984 1523 1 chr5D.!!$F5 539
3 TraesCS5D01G446800 chr5A 621022338 621024269 1931 False 1156.50 2037 90.0695 1 1862 2 chr5A.!!$F1 1861
4 TraesCS5D01G446800 chr5B 616310575 616311117 542 False 634.00 634 87.9560 984 1523 1 chr5B.!!$F1 539
5 TraesCS5D01G446800 chr5B 615733668 615737363 3695 False 438.72 1421 90.6854 1 1769 5 chr5B.!!$F2 1768
6 TraesCS5D01G446800 chrUn 335555201 335555745 544 True 654.00 654 88.5450 997 1538 1 chrUn.!!$R4 541
7 TraesCS5D01G446800 chrUn 68273517 68274061 544 True 643.00 643 88.1820 997 1538 1 chrUn.!!$R1 541
8 TraesCS5D01G446800 chrUn 302517542 302518103 561 False 643.00 643 87.6540 984 1538 1 chrUn.!!$F3 554
9 TraesCS5D01G446800 chrUn 345125686 345126247 561 False 643.00 643 87.6540 984 1538 1 chrUn.!!$F4 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 1017 0.102481 AGCTTACTACACATCGGCGG 59.898 55.0 7.21 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 4057 0.035439 CCTGCCTATTGGTCACGGTT 60.035 55.0 0.0 0.0 35.27 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 6.365520 GTTTCTTGTCATATAACCATCCCCT 58.634 40.000 0.00 0.00 0.00 4.79
121 122 5.825593 TCTTGTCATATAACCATCCCCTC 57.174 43.478 0.00 0.00 0.00 4.30
146 147 7.726738 TCAGGGTTTAAGTTTTAGGCTTAACAT 59.273 33.333 12.74 5.44 37.91 2.71
153 154 2.032680 TTAGGCTTAACATCGGTGCC 57.967 50.000 0.00 0.00 43.52 5.01
227 284 4.282496 AGGACTCAATATCTCGAAGGTGT 58.718 43.478 0.00 0.00 0.00 4.16
241 315 3.483574 CGAAGGTGTTCATATGTGCGTTC 60.484 47.826 1.90 7.86 32.36 3.95
243 317 3.609853 AGGTGTTCATATGTGCGTTCAT 58.390 40.909 1.90 0.87 0.00 2.57
261 335 5.279006 CGTTCATAGGGATAGTGTATGTGCT 60.279 44.000 0.00 0.00 0.00 4.40
263 337 6.346477 TCATAGGGATAGTGTATGTGCTTC 57.654 41.667 0.00 0.00 0.00 3.86
281 355 3.748048 GCTTCTGTGTGAGCATCTACAAA 59.252 43.478 0.00 0.00 33.79 2.83
340 414 3.365291 ATCGGCGCGCAGAGGTAAA 62.365 57.895 34.98 14.89 0.00 2.01
418 1017 0.102481 AGCTTACTACACATCGGCGG 59.898 55.000 7.21 0.00 0.00 6.13
434 2312 1.348036 GGCGGGCAGAGGTAATCTTAT 59.652 52.381 0.00 0.00 35.47 1.73
435 2313 2.565834 GGCGGGCAGAGGTAATCTTATA 59.434 50.000 0.00 0.00 35.47 0.98
461 2348 1.977188 TGACATGACTAACTGACGCG 58.023 50.000 3.53 3.53 0.00 6.01
518 2408 1.904287 TGCGTTTCCAAAGCACCTAT 58.096 45.000 0.00 0.00 35.81 2.57
537 2427 1.310904 TTCCAACACGTACTTTGGGC 58.689 50.000 18.03 0.00 42.35 5.36
582 2473 2.680339 GGCAAGCAAGTCATCTAGAACC 59.320 50.000 0.00 0.00 0.00 3.62
589 2480 4.081420 GCAAGTCATCTAGAACCTCAGGAA 60.081 45.833 0.00 0.00 0.00 3.36
610 2501 2.942710 TCGATCGAGAACCACAAGAAC 58.057 47.619 15.15 0.00 0.00 3.01
623 2514 3.548818 CCACAAGAACTGAAAAGCCTTCG 60.549 47.826 0.00 0.00 0.00 3.79
625 2516 3.312697 ACAAGAACTGAAAAGCCTTCGTC 59.687 43.478 0.00 0.00 0.00 4.20
626 2517 3.477210 AGAACTGAAAAGCCTTCGTCT 57.523 42.857 0.00 0.00 0.00 4.18
627 2518 4.602340 AGAACTGAAAAGCCTTCGTCTA 57.398 40.909 0.00 0.00 0.00 2.59
628 2519 4.561105 AGAACTGAAAAGCCTTCGTCTAG 58.439 43.478 0.00 0.00 0.00 2.43
630 2521 3.915536 ACTGAAAAGCCTTCGTCTAGTC 58.084 45.455 0.00 0.00 0.00 2.59
631 2522 3.321111 ACTGAAAAGCCTTCGTCTAGTCA 59.679 43.478 0.00 0.00 0.00 3.41
635 2526 6.460781 TGAAAAGCCTTCGTCTAGTCAATTA 58.539 36.000 0.00 0.00 0.00 1.40
636 2527 7.103641 TGAAAAGCCTTCGTCTAGTCAATTAT 58.896 34.615 0.00 0.00 0.00 1.28
643 2573 7.804129 GCCTTCGTCTAGTCAATTATAGTACTG 59.196 40.741 5.39 0.00 0.00 2.74
644 2574 8.838365 CCTTCGTCTAGTCAATTATAGTACTGT 58.162 37.037 5.39 0.39 0.00 3.55
672 2602 0.104934 TTATCCTCCCTCTCCCTGCC 60.105 60.000 0.00 0.00 0.00 4.85
673 2603 2.373338 TATCCTCCCTCTCCCTGCCG 62.373 65.000 0.00 0.00 0.00 5.69
674 2604 4.465446 CCTCCCTCTCCCTGCCGA 62.465 72.222 0.00 0.00 0.00 5.54
675 2605 2.364317 CTCCCTCTCCCTGCCGAA 60.364 66.667 0.00 0.00 0.00 4.30
676 2606 1.764054 CTCCCTCTCCCTGCCGAAT 60.764 63.158 0.00 0.00 0.00 3.34
677 2607 2.037620 CTCCCTCTCCCTGCCGAATG 62.038 65.000 0.00 0.00 0.00 2.67
678 2608 2.203126 CCTCTCCCTGCCGAATGC 60.203 66.667 0.00 0.00 41.77 3.56
679 2609 2.203126 CTCTCCCTGCCGAATGCC 60.203 66.667 0.00 0.00 40.16 4.40
680 2610 4.161295 TCTCCCTGCCGAATGCCG 62.161 66.667 0.00 0.00 40.16 5.69
681 2611 4.161295 CTCCCTGCCGAATGCCGA 62.161 66.667 0.00 0.00 41.76 5.54
682 2612 3.466791 CTCCCTGCCGAATGCCGAT 62.467 63.158 0.00 0.00 41.76 4.18
758 2688 6.128634 ACGTACTTGGATTGAATTTCTCGAAC 60.129 38.462 0.00 0.00 0.00 3.95
802 2733 8.419076 TTTGCTGAACTTTCATTTAAGAAACC 57.581 30.769 0.00 0.00 36.46 3.27
838 2769 5.137551 CCTAACCTTCCTCAACTTTCCAAA 58.862 41.667 0.00 0.00 0.00 3.28
860 2791 3.522343 ACTTCCCTACTTACCATGGAACC 59.478 47.826 21.47 0.00 32.01 3.62
911 2842 3.616802 CGCAGCACCATATCTCATCATCT 60.617 47.826 0.00 0.00 0.00 2.90
912 2843 4.381292 CGCAGCACCATATCTCATCATCTA 60.381 45.833 0.00 0.00 0.00 1.98
918 2849 8.916062 AGCACCATATCTCATCATCTAAGATAG 58.084 37.037 0.00 0.00 35.93 2.08
994 2926 3.586470 TTCCCTCACTTTTGTAAGCCA 57.414 42.857 0.00 0.00 34.60 4.75
1332 3274 1.447838 CTACGACCACGGCAGCAAT 60.448 57.895 0.00 0.00 44.46 3.56
1374 3316 3.567478 CTCGTGCGGGCACTACACA 62.567 63.158 20.27 0.32 44.16 3.72
1502 3444 3.149436 GGCAGAGCCCATACTAGGA 57.851 57.895 0.00 0.00 44.06 2.94
1514 3473 5.443283 CCCATACTAGGATATGCATGCATT 58.557 41.667 36.23 23.51 37.82 3.56
1533 3492 0.806241 TCGTGCATGTACGTAGCAGA 59.194 50.000 30.81 12.02 44.06 4.26
1543 3502 5.428496 TGTACGTAGCAGAGCGTATATTT 57.572 39.130 0.00 0.00 43.87 1.40
1560 3519 8.850452 GCGTATATTTGCATAAAGAATAAAGCC 58.150 33.333 0.00 0.00 0.00 4.35
1602 3561 6.059787 AGATGTGAAACTTTAGCAGGAGAT 57.940 37.500 0.00 0.00 38.04 2.75
1622 3581 9.656323 AGGAGATATTCAAGGTATGTGTAGTTA 57.344 33.333 0.00 0.00 0.00 2.24
1623 3582 9.694137 GGAGATATTCAAGGTATGTGTAGTTAC 57.306 37.037 0.00 0.00 0.00 2.50
1624 3583 9.694137 GAGATATTCAAGGTATGTGTAGTTACC 57.306 37.037 0.00 0.00 38.53 2.85
1625 3584 8.648693 AGATATTCAAGGTATGTGTAGTTACCC 58.351 37.037 0.00 0.00 38.95 3.69
1680 3667 2.490903 GCTATGCAGGGCTTATGAATGG 59.509 50.000 6.45 0.00 0.00 3.16
1716 3703 2.623418 TCAGGGGTGAAGCTAGAGAA 57.377 50.000 0.00 0.00 0.00 2.87
1801 3800 3.329277 TGGATGGGATCTGATTGGATGA 58.671 45.455 0.00 0.00 0.00 2.92
1802 3801 3.723154 TGGATGGGATCTGATTGGATGAA 59.277 43.478 0.00 0.00 0.00 2.57
1803 3802 4.077822 GGATGGGATCTGATTGGATGAAC 58.922 47.826 0.00 0.00 0.00 3.18
1806 3805 3.137176 TGGGATCTGATTGGATGAACTCC 59.863 47.826 0.00 0.00 45.19 3.85
1808 3807 3.137176 GGATCTGATTGGATGAACTCCCA 59.863 47.826 0.00 0.00 44.23 4.37
1811 3810 3.012518 CTGATTGGATGAACTCCCACAC 58.987 50.000 0.00 0.00 44.23 3.82
1816 3815 1.340114 GGATGAACTCCCACACCTTCC 60.340 57.143 0.00 0.00 38.19 3.46
1821 3820 3.316573 CTCCCACACCTTCCGAGCC 62.317 68.421 0.00 0.00 0.00 4.70
1822 3821 4.760047 CCCACACCTTCCGAGCCG 62.760 72.222 0.00 0.00 0.00 5.52
1843 3842 4.785453 GGGACGCCTTGAGCCAGG 62.785 72.222 0.00 0.00 38.78 4.45
1847 3846 3.207669 CGCCTTGAGCCAGGATGC 61.208 66.667 0.00 0.00 38.78 3.91
1864 3863 0.250234 TGCCATATAGCATCCCTCGC 59.750 55.000 0.00 0.00 38.00 5.03
1865 3864 0.539051 GCCATATAGCATCCCTCGCT 59.461 55.000 0.00 0.00 43.62 4.93
1866 3865 1.757118 GCCATATAGCATCCCTCGCTA 59.243 52.381 0.00 0.00 45.55 4.26
1867 3866 2.168521 GCCATATAGCATCCCTCGCTAA 59.831 50.000 0.00 0.00 44.70 3.09
1868 3867 3.181461 GCCATATAGCATCCCTCGCTAAT 60.181 47.826 0.00 0.00 44.70 1.73
1869 3868 4.039245 GCCATATAGCATCCCTCGCTAATA 59.961 45.833 0.00 0.00 44.70 0.98
1870 3869 5.777802 CCATATAGCATCCCTCGCTAATAG 58.222 45.833 0.00 0.00 44.70 1.73
1871 3870 5.279206 CCATATAGCATCCCTCGCTAATAGG 60.279 48.000 0.00 0.00 44.70 2.57
1872 3871 2.310779 AGCATCCCTCGCTAATAGGA 57.689 50.000 0.00 0.00 38.15 2.94
1873 3872 2.609747 AGCATCCCTCGCTAATAGGAA 58.390 47.619 0.00 0.00 38.15 3.36
1874 3873 2.972713 AGCATCCCTCGCTAATAGGAAA 59.027 45.455 0.00 0.00 38.15 3.13
1875 3874 3.391296 AGCATCCCTCGCTAATAGGAAAA 59.609 43.478 0.00 0.00 38.15 2.29
1876 3875 3.748568 GCATCCCTCGCTAATAGGAAAAG 59.251 47.826 0.00 0.00 36.08 2.27
1877 3876 4.319177 CATCCCTCGCTAATAGGAAAAGG 58.681 47.826 0.00 0.00 36.08 3.11
1878 3877 2.704065 TCCCTCGCTAATAGGAAAAGGG 59.296 50.000 0.00 0.00 42.81 3.95
1879 3878 2.224548 CCCTCGCTAATAGGAAAAGGGG 60.225 54.545 0.00 0.00 38.65 4.79
1880 3879 2.495084 CTCGCTAATAGGAAAAGGGGC 58.505 52.381 0.00 0.00 0.00 5.80
1881 3880 2.104963 CTCGCTAATAGGAAAAGGGGCT 59.895 50.000 0.00 0.00 0.00 5.19
1882 3881 2.508300 TCGCTAATAGGAAAAGGGGCTT 59.492 45.455 0.00 0.00 0.00 4.35
1883 3882 3.053917 TCGCTAATAGGAAAAGGGGCTTT 60.054 43.478 0.00 0.00 34.94 3.51
1884 3883 3.699538 CGCTAATAGGAAAAGGGGCTTTT 59.300 43.478 0.00 0.00 44.92 2.27
1885 3884 4.885325 CGCTAATAGGAAAAGGGGCTTTTA 59.115 41.667 0.00 0.00 42.72 1.52
1886 3885 5.535030 CGCTAATAGGAAAAGGGGCTTTTAT 59.465 40.000 0.00 0.00 42.72 1.40
1887 3886 6.294010 CGCTAATAGGAAAAGGGGCTTTTATC 60.294 42.308 0.00 0.00 42.72 1.75
1888 3887 6.015350 GCTAATAGGAAAAGGGGCTTTTATCC 60.015 42.308 0.00 0.00 42.72 2.59
1889 3888 3.116096 AGGAAAAGGGGCTTTTATCCC 57.884 47.619 0.00 0.00 42.72 3.85
1894 3893 3.293199 GGGGCTTTTATCCCGGTTT 57.707 52.632 0.00 0.00 44.86 3.27
1895 3894 0.821517 GGGGCTTTTATCCCGGTTTG 59.178 55.000 0.00 0.00 44.86 2.93
1896 3895 1.552578 GGGCTTTTATCCCGGTTTGT 58.447 50.000 0.00 0.00 33.43 2.83
1897 3896 2.621147 GGGGCTTTTATCCCGGTTTGTA 60.621 50.000 0.00 0.00 44.86 2.41
1898 3897 3.090790 GGGCTTTTATCCCGGTTTGTAA 58.909 45.455 0.00 0.00 33.43 2.41
1899 3898 3.129813 GGGCTTTTATCCCGGTTTGTAAG 59.870 47.826 0.00 0.00 33.43 2.34
1900 3899 3.129813 GGCTTTTATCCCGGTTTGTAAGG 59.870 47.826 0.00 0.00 0.00 2.69
1901 3900 3.129813 GCTTTTATCCCGGTTTGTAAGGG 59.870 47.826 0.00 0.00 46.40 3.95
1902 3901 4.338012 CTTTTATCCCGGTTTGTAAGGGT 58.662 43.478 0.00 0.00 45.27 4.34
1903 3902 3.632643 TTATCCCGGTTTGTAAGGGTC 57.367 47.619 0.00 0.00 45.27 4.46
1904 3903 1.665137 ATCCCGGTTTGTAAGGGTCT 58.335 50.000 0.00 0.00 45.27 3.85
1905 3904 1.437397 TCCCGGTTTGTAAGGGTCTT 58.563 50.000 0.00 0.00 45.27 3.01
1906 3905 1.776063 TCCCGGTTTGTAAGGGTCTTT 59.224 47.619 0.00 0.00 45.27 2.52
1907 3906 2.175284 TCCCGGTTTGTAAGGGTCTTTT 59.825 45.455 0.00 0.00 45.27 2.27
1908 3907 2.295070 CCCGGTTTGTAAGGGTCTTTTG 59.705 50.000 0.00 0.00 40.27 2.44
1909 3908 2.953648 CCGGTTTGTAAGGGTCTTTTGT 59.046 45.455 0.00 0.00 0.00 2.83
1910 3909 3.004002 CCGGTTTGTAAGGGTCTTTTGTC 59.996 47.826 0.00 0.00 0.00 3.18
1911 3910 3.004002 CGGTTTGTAAGGGTCTTTTGTCC 59.996 47.826 0.00 0.00 0.00 4.02
1912 3911 3.319972 GGTTTGTAAGGGTCTTTTGTCCC 59.680 47.826 0.00 0.00 46.27 4.46
1916 3915 4.914128 GGGTCTTTTGTCCCGGTT 57.086 55.556 0.00 0.00 37.99 4.44
1917 3916 3.120796 GGGTCTTTTGTCCCGGTTT 57.879 52.632 0.00 0.00 37.99 3.27
1918 3917 1.405872 GGGTCTTTTGTCCCGGTTTT 58.594 50.000 0.00 0.00 37.99 2.43
1919 3918 1.758280 GGGTCTTTTGTCCCGGTTTTT 59.242 47.619 0.00 0.00 37.99 1.94
1920 3919 2.482316 GGGTCTTTTGTCCCGGTTTTTG 60.482 50.000 0.00 0.00 37.99 2.44
1921 3920 2.427812 GGTCTTTTGTCCCGGTTTTTGA 59.572 45.455 0.00 0.00 0.00 2.69
1922 3921 3.119065 GGTCTTTTGTCCCGGTTTTTGAA 60.119 43.478 0.00 0.00 0.00 2.69
1923 3922 4.496360 GTCTTTTGTCCCGGTTTTTGAAA 58.504 39.130 0.00 0.00 0.00 2.69
1924 3923 4.327898 GTCTTTTGTCCCGGTTTTTGAAAC 59.672 41.667 0.00 0.00 0.00 2.78
1925 3924 2.563471 TTGTCCCGGTTTTTGAAACG 57.437 45.000 0.00 0.00 0.00 3.60
1926 3925 0.739561 TGTCCCGGTTTTTGAAACGG 59.260 50.000 8.57 8.57 45.57 4.44
1929 3928 3.555401 CCGGTTTTTGAAACGGGAC 57.445 52.632 19.45 0.00 41.48 4.46
1930 3929 1.026584 CCGGTTTTTGAAACGGGACT 58.973 50.000 19.45 0.00 41.48 3.85
1931 3930 2.220313 CCGGTTTTTGAAACGGGACTA 58.780 47.619 19.45 0.00 41.48 2.59
1932 3931 2.617774 CCGGTTTTTGAAACGGGACTAA 59.382 45.455 19.45 0.00 41.48 2.24
1933 3932 3.066481 CCGGTTTTTGAAACGGGACTAAA 59.934 43.478 19.45 0.00 41.48 1.85
1934 3933 4.284485 CGGTTTTTGAAACGGGACTAAAG 58.716 43.478 3.93 0.00 0.00 1.85
1935 3934 4.613944 GGTTTTTGAAACGGGACTAAAGG 58.386 43.478 0.00 0.00 0.00 3.11
1936 3935 4.500205 GGTTTTTGAAACGGGACTAAAGGG 60.500 45.833 0.00 0.00 0.00 3.95
1937 3936 3.581265 TTTGAAACGGGACTAAAGGGT 57.419 42.857 0.00 0.00 0.00 4.34
1938 3937 2.845363 TGAAACGGGACTAAAGGGTC 57.155 50.000 0.00 0.00 35.66 4.46
1939 3938 1.001181 TGAAACGGGACTAAAGGGTCG 59.999 52.381 0.00 0.00 37.12 4.79
1940 3939 1.001293 GAAACGGGACTAAAGGGTCGT 59.999 52.381 0.00 0.00 37.12 4.34
1941 3940 1.051008 AACGGGACTAAAGGGTCGTT 58.949 50.000 0.00 0.00 37.12 3.85
1942 3941 1.923356 ACGGGACTAAAGGGTCGTTA 58.077 50.000 0.00 0.00 37.12 3.18
1943 3942 1.546029 ACGGGACTAAAGGGTCGTTAC 59.454 52.381 0.00 0.00 37.12 2.50
1944 3943 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
1945 3944 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
1946 3945 3.065925 CGGGACTAAAGGGTCGTTACTAG 59.934 52.174 0.00 0.00 37.12 2.57
1947 3946 4.273318 GGGACTAAAGGGTCGTTACTAGA 58.727 47.826 0.00 0.00 37.12 2.43
1948 3947 4.337836 GGGACTAAAGGGTCGTTACTAGAG 59.662 50.000 0.00 0.00 37.12 2.43
1949 3948 4.202000 GGACTAAAGGGTCGTTACTAGAGC 60.202 50.000 0.00 0.00 37.12 4.09
1956 3955 4.502171 GGTCGTTACTAGAGCCCTAATC 57.498 50.000 0.00 0.00 0.00 1.75
1957 3956 3.255395 GGTCGTTACTAGAGCCCTAATCC 59.745 52.174 0.00 0.00 0.00 3.01
1958 3957 4.143543 GTCGTTACTAGAGCCCTAATCCT 58.856 47.826 0.00 0.00 0.00 3.24
1959 3958 4.583907 GTCGTTACTAGAGCCCTAATCCTT 59.416 45.833 0.00 0.00 0.00 3.36
1960 3959 5.068855 GTCGTTACTAGAGCCCTAATCCTTT 59.931 44.000 0.00 0.00 0.00 3.11
1961 3960 6.264067 GTCGTTACTAGAGCCCTAATCCTTTA 59.736 42.308 0.00 0.00 0.00 1.85
1962 3961 6.489361 TCGTTACTAGAGCCCTAATCCTTTAG 59.511 42.308 0.00 0.00 35.55 1.85
1963 3962 6.264970 CGTTACTAGAGCCCTAATCCTTTAGT 59.735 42.308 0.00 0.00 34.20 2.24
1964 3963 7.521910 CGTTACTAGAGCCCTAATCCTTTAGTC 60.522 44.444 0.00 0.00 34.20 2.59
1965 3964 5.149239 ACTAGAGCCCTAATCCTTTAGTCC 58.851 45.833 0.00 0.00 34.20 3.85
1966 3965 3.319220 AGAGCCCTAATCCTTTAGTCCC 58.681 50.000 0.00 0.00 34.20 4.46
1967 3966 2.037381 GAGCCCTAATCCTTTAGTCCCG 59.963 54.545 0.00 0.00 34.20 5.14
1968 3967 1.071857 GCCCTAATCCTTTAGTCCCGG 59.928 57.143 0.00 0.00 34.20 5.73
1969 3968 2.405559 CCCTAATCCTTTAGTCCCGGT 58.594 52.381 0.00 0.00 34.20 5.28
1970 3969 2.775960 CCCTAATCCTTTAGTCCCGGTT 59.224 50.000 0.00 0.00 34.20 4.44
1971 3970 3.181457 CCCTAATCCTTTAGTCCCGGTTC 60.181 52.174 0.00 0.00 34.20 3.62
1972 3971 3.710165 CCTAATCCTTTAGTCCCGGTTCT 59.290 47.826 0.00 0.15 34.20 3.01
1973 3972 4.163649 CCTAATCCTTTAGTCCCGGTTCTT 59.836 45.833 0.00 0.00 34.20 2.52
1974 3973 5.364735 CCTAATCCTTTAGTCCCGGTTCTTA 59.635 44.000 0.00 0.00 34.20 2.10
1975 3974 4.750021 ATCCTTTAGTCCCGGTTCTTAC 57.250 45.455 0.00 0.00 0.00 2.34
1976 3975 3.509442 TCCTTTAGTCCCGGTTCTTACA 58.491 45.455 0.00 0.00 0.00 2.41
1977 3976 3.259123 TCCTTTAGTCCCGGTTCTTACAC 59.741 47.826 0.00 0.00 0.00 2.90
1978 3977 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
1979 3978 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
1980 3979 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
1981 3980 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
1986 3985 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
1987 3986 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
1988 3987 1.039068 TTCTTACACGAACCGGGACA 58.961 50.000 6.32 0.00 32.98 4.02
1989 3988 0.599558 TCTTACACGAACCGGGACAG 59.400 55.000 6.32 0.00 32.98 3.51
1990 3989 0.599558 CTTACACGAACCGGGACAGA 59.400 55.000 6.32 0.00 32.98 3.41
1991 3990 1.000060 CTTACACGAACCGGGACAGAA 60.000 52.381 6.32 0.00 32.98 3.02
1992 3991 0.599558 TACACGAACCGGGACAGAAG 59.400 55.000 6.32 0.00 32.98 2.85
1993 3992 1.374252 CACGAACCGGGACAGAAGG 60.374 63.158 6.32 0.00 28.17 3.46
1994 3993 1.835712 ACGAACCGGGACAGAAGGT 60.836 57.895 6.32 0.00 40.50 3.50
1995 3994 1.080025 CGAACCGGGACAGAAGGTC 60.080 63.158 6.32 0.00 46.20 3.85
2003 4002 2.352817 GACAGAAGGTCCTCCACGT 58.647 57.895 0.00 0.00 40.83 4.49
2004 4003 0.038159 GACAGAAGGTCCTCCACGTG 60.038 60.000 9.08 9.08 40.83 4.49
2005 4004 1.293498 CAGAAGGTCCTCCACGTGG 59.707 63.158 29.26 29.26 35.89 4.94
2006 4005 2.047179 GAAGGTCCTCCACGTGGC 60.047 66.667 30.25 15.44 35.89 5.01
2007 4006 3.607370 GAAGGTCCTCCACGTGGCC 62.607 68.421 30.25 23.65 35.89 5.36
2048 4047 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
2049 4048 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
2050 4049 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
2051 4050 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
2052 4051 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
2053 4052 2.519780 TTTGGTCCCGGTTGGTGC 60.520 61.111 0.00 0.00 34.77 5.01
2054 4053 4.589675 TTGGTCCCGGTTGGTGCC 62.590 66.667 0.00 0.00 34.77 5.01
2066 4065 3.284449 GGTGCCACCAACCGTGAC 61.284 66.667 9.55 0.00 46.20 3.67
2067 4066 3.284449 GTGCCACCAACCGTGACC 61.284 66.667 0.00 0.00 46.20 4.02
2068 4067 3.798511 TGCCACCAACCGTGACCA 61.799 61.111 0.00 0.00 46.20 4.02
2069 4068 2.517402 GCCACCAACCGTGACCAA 60.517 61.111 0.00 0.00 46.20 3.67
2070 4069 1.901464 GCCACCAACCGTGACCAAT 60.901 57.895 0.00 0.00 46.20 3.16
2071 4070 0.606944 GCCACCAACCGTGACCAATA 60.607 55.000 0.00 0.00 46.20 1.90
2072 4071 1.448985 CCACCAACCGTGACCAATAG 58.551 55.000 0.00 0.00 46.20 1.73
2073 4072 1.448985 CACCAACCGTGACCAATAGG 58.551 55.000 0.00 0.00 46.20 2.57
2074 4073 0.322187 ACCAACCGTGACCAATAGGC 60.322 55.000 0.00 0.00 39.06 3.93
2075 4074 0.322098 CCAACCGTGACCAATAGGCA 60.322 55.000 0.00 0.00 39.06 4.75
2076 4075 1.086696 CAACCGTGACCAATAGGCAG 58.913 55.000 0.00 0.00 39.06 4.85
2077 4076 0.035439 AACCGTGACCAATAGGCAGG 60.035 55.000 0.00 0.00 39.06 4.85
2078 4077 1.153168 CCGTGACCAATAGGCAGGG 60.153 63.158 0.00 0.00 39.11 4.45
2079 4078 1.819632 CGTGACCAATAGGCAGGGC 60.820 63.158 0.00 0.00 39.06 5.19
2089 4088 2.997315 GGCAGGGCCTTTTGTCCC 60.997 66.667 1.32 0.00 46.69 4.46
2093 4092 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
2094 4093 2.570284 GGGCCTTTTGTCCCGGTTG 61.570 63.158 0.84 0.00 32.00 3.77
2095 4094 2.570284 GGCCTTTTGTCCCGGTTGG 61.570 63.158 0.00 0.00 0.00 3.77
2096 4095 1.830847 GCCTTTTGTCCCGGTTGGT 60.831 57.895 0.00 0.00 34.77 3.67
2097 4096 1.802337 GCCTTTTGTCCCGGTTGGTC 61.802 60.000 0.00 0.00 34.77 4.02
2098 4097 1.176619 CCTTTTGTCCCGGTTGGTCC 61.177 60.000 0.00 0.00 34.77 4.46
2099 4098 1.152715 TTTTGTCCCGGTTGGTCCC 60.153 57.895 0.00 0.00 34.77 4.46
2106 4105 4.259131 CGGTTGGTCCCGGTTGGT 62.259 66.667 0.00 0.00 44.32 3.67
2107 4106 2.596338 GGTTGGTCCCGGTTGGTG 60.596 66.667 0.00 0.00 34.77 4.17
2108 4107 2.596338 GTTGGTCCCGGTTGGTGG 60.596 66.667 0.00 0.00 34.77 4.61
2109 4108 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
2111 4110 4.360405 GGTCCCGGTTGGTGGCAT 62.360 66.667 0.00 0.00 34.77 4.40
2112 4111 2.672295 GTCCCGGTTGGTGGCATA 59.328 61.111 0.00 0.00 34.77 3.14
2113 4112 1.451387 GTCCCGGTTGGTGGCATAG 60.451 63.158 0.00 0.00 34.77 2.23
2114 4113 2.124320 CCCGGTTGGTGGCATAGG 60.124 66.667 0.00 0.00 0.00 2.57
2115 4114 2.828549 CCGGTTGGTGGCATAGGC 60.829 66.667 0.00 0.00 40.13 3.93
2116 4115 2.045438 CGGTTGGTGGCATAGGCA 60.045 61.111 0.15 0.00 43.71 4.75
2117 4116 1.453745 CGGTTGGTGGCATAGGCAT 60.454 57.895 0.15 0.00 43.71 4.40
2118 4117 1.447317 CGGTTGGTGGCATAGGCATC 61.447 60.000 0.15 0.00 43.71 3.91
2119 4118 1.109323 GGTTGGTGGCATAGGCATCC 61.109 60.000 0.15 3.32 43.71 3.51
2120 4119 0.395586 GTTGGTGGCATAGGCATCCA 60.396 55.000 9.97 9.97 43.71 3.41
2122 4121 3.736483 GTGGCATAGGCATCCACG 58.264 61.111 0.15 0.00 43.71 4.94
2123 4122 2.203195 TGGCATAGGCATCCACGC 60.203 61.111 0.15 0.00 43.71 5.34
2124 4123 3.349006 GGCATAGGCATCCACGCG 61.349 66.667 3.53 3.53 43.71 6.01
2125 4124 2.588877 GCATAGGCATCCACGCGT 60.589 61.111 5.58 5.58 40.72 6.01
2126 4125 2.598632 GCATAGGCATCCACGCGTC 61.599 63.158 9.86 0.00 40.72 5.19
2127 4126 1.227234 CATAGGCATCCACGCGTCA 60.227 57.895 9.86 0.00 0.00 4.35
2128 4127 0.809636 CATAGGCATCCACGCGTCAA 60.810 55.000 9.86 0.00 0.00 3.18
2129 4128 0.810031 ATAGGCATCCACGCGTCAAC 60.810 55.000 9.86 0.00 0.00 3.18
2130 4129 2.161078 TAGGCATCCACGCGTCAACA 62.161 55.000 9.86 0.00 0.00 3.33
2131 4130 2.398554 GGCATCCACGCGTCAACAT 61.399 57.895 9.86 0.00 0.00 2.71
2132 4131 1.501741 GCATCCACGCGTCAACATT 59.498 52.632 9.86 0.00 0.00 2.71
2133 4132 0.109781 GCATCCACGCGTCAACATTT 60.110 50.000 9.86 0.00 0.00 2.32
2134 4133 1.882198 CATCCACGCGTCAACATTTC 58.118 50.000 9.86 0.00 0.00 2.17
2135 4134 1.196581 CATCCACGCGTCAACATTTCA 59.803 47.619 9.86 0.00 0.00 2.69
2136 4135 0.865111 TCCACGCGTCAACATTTCAG 59.135 50.000 9.86 0.00 0.00 3.02
2137 4136 0.110238 CCACGCGTCAACATTTCAGG 60.110 55.000 9.86 0.00 0.00 3.86
2138 4137 0.110238 CACGCGTCAACATTTCAGGG 60.110 55.000 9.86 0.00 0.00 4.45
2139 4138 1.234615 ACGCGTCAACATTTCAGGGG 61.235 55.000 5.58 0.00 0.00 4.79
2140 4139 1.212751 GCGTCAACATTTCAGGGGC 59.787 57.895 0.00 0.00 0.00 5.80
2141 4140 1.244019 GCGTCAACATTTCAGGGGCT 61.244 55.000 0.00 0.00 0.00 5.19
2142 4141 0.523072 CGTCAACATTTCAGGGGCTG 59.477 55.000 0.00 0.00 0.00 4.85
2206 4205 2.883122 TGCGGGGTTAATTTAGGTGT 57.117 45.000 0.00 0.00 0.00 4.16
2207 4206 3.157750 TGCGGGGTTAATTTAGGTGTT 57.842 42.857 0.00 0.00 0.00 3.32
2208 4207 3.498334 TGCGGGGTTAATTTAGGTGTTT 58.502 40.909 0.00 0.00 0.00 2.83
2209 4208 3.506844 TGCGGGGTTAATTTAGGTGTTTC 59.493 43.478 0.00 0.00 0.00 2.78
2210 4209 3.506844 GCGGGGTTAATTTAGGTGTTTCA 59.493 43.478 0.00 0.00 0.00 2.69
2211 4210 4.158949 GCGGGGTTAATTTAGGTGTTTCAT 59.841 41.667 0.00 0.00 0.00 2.57
2212 4211 5.357596 GCGGGGTTAATTTAGGTGTTTCATA 59.642 40.000 0.00 0.00 0.00 2.15
2213 4212 6.040054 GCGGGGTTAATTTAGGTGTTTCATAT 59.960 38.462 0.00 0.00 0.00 1.78
2214 4213 7.229106 GCGGGGTTAATTTAGGTGTTTCATATA 59.771 37.037 0.00 0.00 0.00 0.86
2215 4214 9.292195 CGGGGTTAATTTAGGTGTTTCATATAT 57.708 33.333 0.00 0.00 0.00 0.86
2225 4224 9.899661 TTAGGTGTTTCATATATTGTGTTAGCT 57.100 29.630 0.00 0.00 0.00 3.32
2227 4226 9.547753 AGGTGTTTCATATATTGTGTTAGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
2228 4227 8.283291 GGTGTTTCATATATTGTGTTAGCTAGC 58.717 37.037 6.62 6.62 0.00 3.42
2229 4228 9.046296 GTGTTTCATATATTGTGTTAGCTAGCT 57.954 33.333 23.12 23.12 0.00 3.32
2252 4251 9.825109 AGCTAATTAATAAAGAGAAGTGTCCTC 57.175 33.333 0.00 0.00 0.00 3.71
2253 4252 9.825109 GCTAATTAATAAAGAGAAGTGTCCTCT 57.175 33.333 2.66 0.00 42.37 3.69
2260 4259 9.487442 AATAAAGAGAAGTGTCCTCTCTTATCT 57.513 33.333 13.85 3.79 46.42 1.98
2261 4260 7.404671 AAAGAGAAGTGTCCTCTCTTATCTC 57.595 40.000 13.85 0.00 46.42 2.75
2262 4261 5.445964 AGAGAAGTGTCCTCTCTTATCTCC 58.554 45.833 0.00 0.00 39.76 3.71
2263 4262 4.204012 AGAAGTGTCCTCTCTTATCTCCG 58.796 47.826 0.00 0.00 0.00 4.63
2264 4263 3.655615 AGTGTCCTCTCTTATCTCCGT 57.344 47.619 0.00 0.00 0.00 4.69
2265 4264 3.283751 AGTGTCCTCTCTTATCTCCGTG 58.716 50.000 0.00 0.00 0.00 4.94
2266 4265 2.025155 TGTCCTCTCTTATCTCCGTGC 58.975 52.381 0.00 0.00 0.00 5.34
2267 4266 2.303175 GTCCTCTCTTATCTCCGTGCT 58.697 52.381 0.00 0.00 0.00 4.40
2268 4267 2.691011 GTCCTCTCTTATCTCCGTGCTT 59.309 50.000 0.00 0.00 0.00 3.91
2269 4268 2.690497 TCCTCTCTTATCTCCGTGCTTG 59.310 50.000 0.00 0.00 0.00 4.01
2270 4269 2.223923 CCTCTCTTATCTCCGTGCTTGG 60.224 54.545 0.00 0.00 0.00 3.61
2271 4270 2.428890 CTCTCTTATCTCCGTGCTTGGT 59.571 50.000 0.00 0.00 0.00 3.67
2272 4271 2.427453 TCTCTTATCTCCGTGCTTGGTC 59.573 50.000 0.00 0.00 0.00 4.02
2273 4272 1.134367 TCTTATCTCCGTGCTTGGTCG 59.866 52.381 0.00 0.00 0.00 4.79
2274 4273 1.134367 CTTATCTCCGTGCTTGGTCGA 59.866 52.381 0.00 0.00 0.00 4.20
2275 4274 0.454600 TATCTCCGTGCTTGGTCGAC 59.545 55.000 7.13 7.13 0.00 4.20
2276 4275 2.543687 ATCTCCGTGCTTGGTCGACG 62.544 60.000 9.92 0.00 0.00 5.12
2279 4278 2.126618 CGTGCTTGGTCGACGCTA 60.127 61.111 9.92 0.00 0.00 4.26
2280 4279 2.434134 CGTGCTTGGTCGACGCTAC 61.434 63.158 9.92 7.70 0.00 3.58
2281 4280 2.126618 TGCTTGGTCGACGCTACG 60.127 61.111 9.92 0.00 0.00 3.51
2282 4281 2.126580 GCTTGGTCGACGCTACGT 60.127 61.111 9.92 0.00 45.10 3.57
2283 4282 1.135315 GCTTGGTCGACGCTACGTA 59.865 57.895 9.92 0.00 41.37 3.57
2284 4283 1.130458 GCTTGGTCGACGCTACGTAC 61.130 60.000 9.92 0.00 41.37 3.67
2285 4284 0.445436 CTTGGTCGACGCTACGTACT 59.555 55.000 9.92 0.00 41.37 2.73
2286 4285 1.660607 CTTGGTCGACGCTACGTACTA 59.339 52.381 9.92 0.00 41.37 1.82
2287 4286 1.939974 TGGTCGACGCTACGTACTAT 58.060 50.000 9.92 0.00 41.37 2.12
2288 4287 3.092334 TGGTCGACGCTACGTACTATA 57.908 47.619 9.92 0.00 41.37 1.31
2289 4288 3.653344 TGGTCGACGCTACGTACTATAT 58.347 45.455 9.92 0.00 41.37 0.86
2290 4289 4.805219 TGGTCGACGCTACGTACTATATA 58.195 43.478 9.92 0.00 41.37 0.86
2291 4290 4.621460 TGGTCGACGCTACGTACTATATAC 59.379 45.833 9.92 0.00 41.37 1.47
2292 4291 4.259056 GGTCGACGCTACGTACTATATACG 60.259 50.000 9.92 5.00 41.37 3.06
2304 4303 7.462109 CGTACTATATACGTATGGAGAGGAC 57.538 44.000 18.37 11.14 36.31 3.85
2305 4304 7.264221 CGTACTATATACGTATGGAGAGGACT 58.736 42.308 18.37 2.04 36.31 3.85
2306 4305 8.409371 CGTACTATATACGTATGGAGAGGACTA 58.591 40.741 18.37 0.00 36.31 2.59
2307 4306 9.748708 GTACTATATACGTATGGAGAGGACTAG 57.251 40.741 18.37 7.17 0.00 2.57
2308 4307 8.606754 ACTATATACGTATGGAGAGGACTAGA 57.393 38.462 18.37 0.00 0.00 2.43
2309 4308 8.477256 ACTATATACGTATGGAGAGGACTAGAC 58.523 40.741 18.37 0.00 0.00 2.59
2310 4309 3.928005 ACGTATGGAGAGGACTAGACA 57.072 47.619 0.00 0.00 0.00 3.41
2311 4310 3.543665 ACGTATGGAGAGGACTAGACAC 58.456 50.000 0.00 0.00 0.00 3.67
2312 4311 2.544686 CGTATGGAGAGGACTAGACACG 59.455 54.545 0.00 0.00 0.00 4.49
2313 4312 1.394618 ATGGAGAGGACTAGACACGC 58.605 55.000 0.00 0.00 0.00 5.34
2314 4313 0.328592 TGGAGAGGACTAGACACGCT 59.671 55.000 0.00 0.00 0.00 5.07
2315 4314 1.558294 TGGAGAGGACTAGACACGCTA 59.442 52.381 0.00 0.00 0.00 4.26
2326 4325 5.926214 CTAGACACGCTAGCTAGTAATCA 57.074 43.478 21.62 1.77 40.15 2.57
2327 4326 6.301687 CTAGACACGCTAGCTAGTAATCAA 57.698 41.667 21.62 2.68 40.15 2.57
2328 4327 5.578005 AGACACGCTAGCTAGTAATCAAA 57.422 39.130 21.62 0.00 0.00 2.69
2329 4328 6.150396 AGACACGCTAGCTAGTAATCAAAT 57.850 37.500 21.62 0.54 0.00 2.32
2330 4329 5.980116 AGACACGCTAGCTAGTAATCAAATG 59.020 40.000 21.62 10.66 0.00 2.32
2331 4330 5.902681 ACACGCTAGCTAGTAATCAAATGA 58.097 37.500 21.62 0.00 0.00 2.57
2332 4331 6.338146 ACACGCTAGCTAGTAATCAAATGAA 58.662 36.000 21.62 0.00 0.00 2.57
2333 4332 6.477033 ACACGCTAGCTAGTAATCAAATGAAG 59.523 38.462 21.62 0.00 0.00 3.02
2334 4333 5.986135 ACGCTAGCTAGTAATCAAATGAAGG 59.014 40.000 21.62 0.00 0.00 3.46
2335 4334 6.183360 ACGCTAGCTAGTAATCAAATGAAGGA 60.183 38.462 21.62 0.00 0.00 3.36
2336 4335 6.701841 CGCTAGCTAGTAATCAAATGAAGGAA 59.298 38.462 21.62 0.00 0.00 3.36
2337 4336 7.224753 CGCTAGCTAGTAATCAAATGAAGGAAA 59.775 37.037 21.62 0.00 0.00 3.13
2338 4337 8.338986 GCTAGCTAGTAATCAAATGAAGGAAAC 58.661 37.037 21.62 0.00 0.00 2.78
2339 4338 9.383519 CTAGCTAGTAATCAAATGAAGGAAACA 57.616 33.333 12.92 0.00 0.00 2.83
2340 4339 8.273780 AGCTAGTAATCAAATGAAGGAAACAG 57.726 34.615 0.00 0.00 0.00 3.16
2341 4340 8.103305 AGCTAGTAATCAAATGAAGGAAACAGA 58.897 33.333 0.00 0.00 0.00 3.41
2342 4341 8.730680 GCTAGTAATCAAATGAAGGAAACAGAA 58.269 33.333 0.00 0.00 0.00 3.02
2344 4343 8.924511 AGTAATCAAATGAAGGAAACAGAAGA 57.075 30.769 0.00 0.00 0.00 2.87
2345 4344 9.525826 AGTAATCAAATGAAGGAAACAGAAGAT 57.474 29.630 0.00 0.00 0.00 2.40
2346 4345 9.780413 GTAATCAAATGAAGGAAACAGAAGATC 57.220 33.333 0.00 0.00 0.00 2.75
2347 4346 6.486253 TCAAATGAAGGAAACAGAAGATCG 57.514 37.500 0.00 0.00 0.00 3.69
2348 4347 5.997746 TCAAATGAAGGAAACAGAAGATCGT 59.002 36.000 0.00 0.00 0.00 3.73
2349 4348 6.147821 TCAAATGAAGGAAACAGAAGATCGTC 59.852 38.462 0.00 0.00 0.00 4.20
2350 4349 4.600692 TGAAGGAAACAGAAGATCGTCA 57.399 40.909 11.35 0.00 0.00 4.35
2351 4350 5.152623 TGAAGGAAACAGAAGATCGTCAT 57.847 39.130 11.35 0.00 0.00 3.06
2352 4351 4.931601 TGAAGGAAACAGAAGATCGTCATG 59.068 41.667 11.35 8.56 0.00 3.07
2353 4352 4.808414 AGGAAACAGAAGATCGTCATGA 57.192 40.909 11.35 0.00 0.00 3.07
2354 4353 5.152623 AGGAAACAGAAGATCGTCATGAA 57.847 39.130 11.35 0.00 0.00 2.57
2355 4354 4.932200 AGGAAACAGAAGATCGTCATGAAC 59.068 41.667 11.35 0.06 0.00 3.18
2356 4355 4.690748 GGAAACAGAAGATCGTCATGAACA 59.309 41.667 11.35 0.00 0.00 3.18
2357 4356 5.352569 GGAAACAGAAGATCGTCATGAACAT 59.647 40.000 11.35 0.00 0.00 2.71
2358 4357 6.535150 GGAAACAGAAGATCGTCATGAACATA 59.465 38.462 11.35 0.00 0.00 2.29
2359 4358 7.225538 GGAAACAGAAGATCGTCATGAACATAT 59.774 37.037 11.35 0.00 0.00 1.78
2360 4359 7.474398 AACAGAAGATCGTCATGAACATATG 57.526 36.000 11.35 0.00 0.00 1.78
2361 4360 5.464722 ACAGAAGATCGTCATGAACATATGC 59.535 40.000 11.35 0.00 0.00 3.14
2362 4361 5.464389 CAGAAGATCGTCATGAACATATGCA 59.536 40.000 11.35 0.00 0.00 3.96
2363 4362 6.147328 CAGAAGATCGTCATGAACATATGCAT 59.853 38.462 11.35 3.79 0.00 3.96
2364 4363 7.330208 CAGAAGATCGTCATGAACATATGCATA 59.670 37.037 9.27 9.27 0.00 3.14
2365 4364 6.957984 AGATCGTCATGAACATATGCATAC 57.042 37.500 8.99 0.00 0.00 2.39
2366 4365 6.458210 AGATCGTCATGAACATATGCATACA 58.542 36.000 8.99 2.70 0.00 2.29
2367 4366 6.589139 AGATCGTCATGAACATATGCATACAG 59.411 38.462 8.99 7.49 0.00 2.74
2368 4367 5.841810 TCGTCATGAACATATGCATACAGA 58.158 37.500 8.99 0.35 0.00 3.41
2369 4368 5.922544 TCGTCATGAACATATGCATACAGAG 59.077 40.000 8.99 2.31 0.00 3.35
2370 4369 5.922544 CGTCATGAACATATGCATACAGAGA 59.077 40.000 8.99 2.75 0.00 3.10
2371 4370 6.089150 CGTCATGAACATATGCATACAGAGAG 59.911 42.308 8.99 0.00 0.00 3.20
2372 4371 7.150640 GTCATGAACATATGCATACAGAGAGA 58.849 38.462 8.99 0.00 0.00 3.10
2373 4372 7.654923 GTCATGAACATATGCATACAGAGAGAA 59.345 37.037 8.99 0.00 0.00 2.87
2374 4373 7.871463 TCATGAACATATGCATACAGAGAGAAG 59.129 37.037 8.99 0.00 0.00 2.85
2375 4374 7.117285 TGAACATATGCATACAGAGAGAAGT 57.883 36.000 8.99 0.00 0.00 3.01
2376 4375 6.982724 TGAACATATGCATACAGAGAGAAGTG 59.017 38.462 8.99 1.86 0.00 3.16
2377 4376 6.721704 ACATATGCATACAGAGAGAAGTGA 57.278 37.500 8.99 0.00 0.00 3.41
2378 4377 7.300556 ACATATGCATACAGAGAGAAGTGAT 57.699 36.000 8.99 0.00 0.00 3.06
2379 4378 8.414629 ACATATGCATACAGAGAGAAGTGATA 57.585 34.615 8.99 0.00 0.00 2.15
2380 4379 9.033711 ACATATGCATACAGAGAGAAGTGATAT 57.966 33.333 8.99 0.00 0.00 1.63
2381 4380 9.518906 CATATGCATACAGAGAGAAGTGATATC 57.481 37.037 8.99 0.00 0.00 1.63
2382 4381 6.006759 TGCATACAGAGAGAAGTGATATCG 57.993 41.667 0.00 0.00 0.00 2.92
2383 4382 5.765182 TGCATACAGAGAGAAGTGATATCGA 59.235 40.000 0.00 0.00 0.00 3.59
2384 4383 6.083630 GCATACAGAGAGAAGTGATATCGAC 58.916 44.000 0.00 0.00 0.00 4.20
2385 4384 6.607689 CATACAGAGAGAAGTGATATCGACC 58.392 44.000 0.00 0.00 0.00 4.79
2386 4385 4.527944 ACAGAGAGAAGTGATATCGACCA 58.472 43.478 0.00 0.00 0.00 4.02
2387 4386 4.336993 ACAGAGAGAAGTGATATCGACCAC 59.663 45.833 0.00 6.38 0.00 4.16
2388 4387 3.886505 AGAGAGAAGTGATATCGACCACC 59.113 47.826 9.84 0.00 34.00 4.61
2389 4388 3.886505 GAGAGAAGTGATATCGACCACCT 59.113 47.826 9.84 3.06 34.00 4.00
2390 4389 3.886505 AGAGAAGTGATATCGACCACCTC 59.113 47.826 9.84 10.01 34.00 3.85
2391 4390 3.886505 GAGAAGTGATATCGACCACCTCT 59.113 47.826 12.55 12.55 36.94 3.69
2392 4391 3.886505 AGAAGTGATATCGACCACCTCTC 59.113 47.826 9.84 6.02 30.63 3.20
2393 4392 2.588620 AGTGATATCGACCACCTCTCC 58.411 52.381 9.84 0.00 34.00 3.71
2394 4393 2.175931 AGTGATATCGACCACCTCTCCT 59.824 50.000 9.84 0.00 34.00 3.69
2395 4394 2.959707 GTGATATCGACCACCTCTCCTT 59.040 50.000 0.00 0.00 0.00 3.36
2396 4395 3.004944 GTGATATCGACCACCTCTCCTTC 59.995 52.174 0.00 0.00 0.00 3.46
2397 4396 3.117474 TGATATCGACCACCTCTCCTTCT 60.117 47.826 0.00 0.00 0.00 2.85
2398 4397 1.770294 ATCGACCACCTCTCCTTCTC 58.230 55.000 0.00 0.00 0.00 2.87
2399 4398 0.699399 TCGACCACCTCTCCTTCTCT 59.301 55.000 0.00 0.00 0.00 3.10
2400 4399 0.814457 CGACCACCTCTCCTTCTCTG 59.186 60.000 0.00 0.00 0.00 3.35
2401 4400 1.614583 CGACCACCTCTCCTTCTCTGA 60.615 57.143 0.00 0.00 0.00 3.27
2402 4401 2.099405 GACCACCTCTCCTTCTCTGAG 58.901 57.143 0.00 0.00 0.00 3.35
2403 4402 1.713647 ACCACCTCTCCTTCTCTGAGA 59.286 52.381 2.58 2.58 37.33 3.27
2410 4409 4.329638 TCTCCTTCTCTGAGAGATTGGT 57.670 45.455 22.61 0.00 38.56 3.67
2411 4410 4.277476 TCTCCTTCTCTGAGAGATTGGTC 58.723 47.826 22.61 0.00 38.56 4.02
2412 4411 3.020274 TCCTTCTCTGAGAGATTGGTCG 58.980 50.000 22.61 6.72 38.56 4.79
2413 4412 3.020274 CCTTCTCTGAGAGATTGGTCGA 58.980 50.000 13.70 0.00 38.56 4.20
2414 4413 3.445450 CCTTCTCTGAGAGATTGGTCGAA 59.555 47.826 13.70 0.00 38.56 3.71
2415 4414 4.420168 CTTCTCTGAGAGATTGGTCGAAC 58.580 47.826 13.70 0.00 38.56 3.95
2416 4415 3.421844 TCTCTGAGAGATTGGTCGAACA 58.578 45.455 8.34 0.00 33.35 3.18
2417 4416 3.826729 TCTCTGAGAGATTGGTCGAACAA 59.173 43.478 19.88 19.88 33.35 2.83
2418 4417 3.914312 TCTGAGAGATTGGTCGAACAAC 58.086 45.455 20.01 12.50 32.39 3.32
2419 4418 3.320826 TCTGAGAGATTGGTCGAACAACA 59.679 43.478 20.01 10.62 32.39 3.33
2420 4419 4.058124 CTGAGAGATTGGTCGAACAACAA 58.942 43.478 20.01 6.80 32.39 2.83
2421 4420 4.058124 TGAGAGATTGGTCGAACAACAAG 58.942 43.478 20.01 0.00 32.39 3.16
2422 4421 4.058817 GAGAGATTGGTCGAACAACAAGT 58.941 43.478 20.01 1.53 32.39 3.16
2423 4422 4.451900 AGAGATTGGTCGAACAACAAGTT 58.548 39.130 20.01 1.07 44.93 2.66
2439 4438 7.361127 ACAACAAGTTCTCGTATATCTATCCG 58.639 38.462 0.00 0.00 0.00 4.18
2440 4439 7.228108 ACAACAAGTTCTCGTATATCTATCCGA 59.772 37.037 0.00 0.00 0.00 4.55
2441 4440 7.131498 ACAAGTTCTCGTATATCTATCCGAC 57.869 40.000 0.00 0.00 0.00 4.79
2442 4441 6.709397 ACAAGTTCTCGTATATCTATCCGACA 59.291 38.462 0.00 0.00 0.00 4.35
2443 4442 6.724694 AGTTCTCGTATATCTATCCGACAC 57.275 41.667 0.00 0.00 0.00 3.67
2444 4443 6.465948 AGTTCTCGTATATCTATCCGACACT 58.534 40.000 0.00 0.00 0.00 3.55
2445 4444 7.609960 AGTTCTCGTATATCTATCCGACACTA 58.390 38.462 0.00 0.00 0.00 2.74
2446 4445 7.545265 AGTTCTCGTATATCTATCCGACACTAC 59.455 40.741 0.00 0.00 0.00 2.73
2447 4446 6.336566 TCTCGTATATCTATCCGACACTACC 58.663 44.000 0.00 0.00 0.00 3.18
2448 4447 5.105063 TCGTATATCTATCCGACACTACCG 58.895 45.833 0.00 0.00 0.00 4.02
2450 4449 1.245732 ATCTATCCGACACTACCGGC 58.754 55.000 0.00 0.00 46.10 6.13
2451 4450 0.182061 TCTATCCGACACTACCGGCT 59.818 55.000 0.00 0.00 46.10 5.52
2452 4451 1.417517 TCTATCCGACACTACCGGCTA 59.582 52.381 0.00 0.00 46.10 3.93
2453 4452 1.534595 CTATCCGACACTACCGGCTAC 59.465 57.143 0.00 0.00 46.10 3.58
2454 4453 0.394762 ATCCGACACTACCGGCTACA 60.395 55.000 0.00 0.00 46.10 2.74
2455 4454 0.394762 TCCGACACTACCGGCTACAT 60.395 55.000 0.00 0.00 46.10 2.29
2456 4455 1.134128 TCCGACACTACCGGCTACATA 60.134 52.381 0.00 0.00 46.10 2.29
2457 4456 1.884579 CCGACACTACCGGCTACATAT 59.115 52.381 0.00 0.00 40.54 1.78
2458 4457 3.076621 CCGACACTACCGGCTACATATA 58.923 50.000 0.00 0.00 40.54 0.86
2459 4458 3.693085 CCGACACTACCGGCTACATATAT 59.307 47.826 0.00 0.00 40.54 0.86
2460 4459 4.877823 CCGACACTACCGGCTACATATATA 59.122 45.833 0.00 0.00 40.54 0.86
2461 4460 5.220739 CCGACACTACCGGCTACATATATAC 60.221 48.000 0.00 0.00 40.54 1.47
2462 4461 5.352293 CGACACTACCGGCTACATATATACA 59.648 44.000 0.00 0.00 0.00 2.29
2463 4462 6.128200 CGACACTACCGGCTACATATATACAA 60.128 42.308 0.00 0.00 0.00 2.41
2464 4463 7.414873 CGACACTACCGGCTACATATATACAAT 60.415 40.741 0.00 0.00 0.00 2.71
2465 4464 8.812513 ACACTACCGGCTACATATATACAATA 57.187 34.615 0.00 0.00 0.00 1.90
2466 4465 9.246670 ACACTACCGGCTACATATATACAATAA 57.753 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.765273 TGTACATGTCGCCTTCATTGTAT 58.235 39.130 0.00 0.00 0.00 2.29
120 121 7.061688 TGTTAAGCCTAAAACTTAAACCCTGA 58.938 34.615 0.00 0.00 40.33 3.86
121 122 7.279750 TGTTAAGCCTAAAACTTAAACCCTG 57.720 36.000 0.00 0.00 40.33 4.45
222 279 3.052455 TGAACGCACATATGAACACCT 57.948 42.857 10.38 0.00 0.00 4.00
227 284 4.681074 TCCCTATGAACGCACATATGAA 57.319 40.909 10.38 0.00 33.21 2.57
241 315 6.162079 CAGAAGCACATACACTATCCCTATG 58.838 44.000 0.00 0.00 0.00 2.23
243 317 5.069119 CACAGAAGCACATACACTATCCCTA 59.931 44.000 0.00 0.00 0.00 3.53
261 335 5.308014 ACATTTGTAGATGCTCACACAGAA 58.692 37.500 0.00 0.00 0.00 3.02
263 337 5.049198 ACAACATTTGTAGATGCTCACACAG 60.049 40.000 0.00 0.00 43.27 3.66
303 377 0.452987 TGGTGTAGCACGACGTATCC 59.547 55.000 0.00 0.00 34.83 2.59
340 414 7.208080 AGTGTAACGTGTTATTTCTTCTGAGT 58.792 34.615 0.00 0.00 45.86 3.41
418 1017 8.589338 TCATCTTTCTATAAGATTACCTCTGCC 58.411 37.037 0.00 0.00 34.96 4.85
434 2312 7.251281 CGTCAGTTAGTCATGTCATCTTTCTA 58.749 38.462 0.00 0.00 0.00 2.10
435 2313 6.096036 CGTCAGTTAGTCATGTCATCTTTCT 58.904 40.000 0.00 0.00 0.00 2.52
518 2408 1.310904 GCCCAAAGTACGTGTTGGAA 58.689 50.000 22.16 0.00 46.11 3.53
537 2427 2.805671 TGATTGCCGGAGTAATATTGCG 59.194 45.455 5.05 0.00 0.00 4.85
566 2457 3.449018 TCCTGAGGTTCTAGATGACTTGC 59.551 47.826 0.00 0.00 0.00 4.01
582 2473 2.359214 TGGTTCTCGATCGATTCCTGAG 59.641 50.000 19.78 5.04 0.00 3.35
589 2480 3.193691 AGTTCTTGTGGTTCTCGATCGAT 59.806 43.478 19.78 0.00 0.00 3.59
610 2501 3.914312 TGACTAGACGAAGGCTTTTCAG 58.086 45.455 0.00 4.84 0.00 3.02
636 2527 8.435982 GGGAGGATAAACTCTAGTACAGTACTA 58.564 40.741 17.86 17.86 39.31 1.82
643 2573 6.005823 GGAGAGGGAGGATAAACTCTAGTAC 58.994 48.000 0.00 0.00 40.19 2.73
644 2574 5.074790 GGGAGAGGGAGGATAAACTCTAGTA 59.925 48.000 0.00 0.00 40.19 1.82
646 2576 4.107311 AGGGAGAGGGAGGATAAACTCTAG 59.893 50.000 0.00 0.00 40.19 2.43
656 2586 4.465446 CGGCAGGGAGAGGGAGGA 62.465 72.222 0.00 0.00 0.00 3.71
680 2610 0.872021 ACCTGCGCTTTCGATCGATC 60.872 55.000 20.18 15.68 38.10 3.69
681 2611 1.141881 ACCTGCGCTTTCGATCGAT 59.858 52.632 20.18 0.00 38.10 3.59
682 2612 1.805539 CACCTGCGCTTTCGATCGA 60.806 57.895 15.15 15.15 38.10 3.59
781 2712 7.649306 CACTGGGTTTCTTAAATGAAAGTTCAG 59.351 37.037 0.00 0.00 41.08 3.02
783 2714 6.420903 GCACTGGGTTTCTTAAATGAAAGTTC 59.579 38.462 0.00 0.00 36.72 3.01
789 2720 4.280677 CCTTGCACTGGGTTTCTTAAATGA 59.719 41.667 0.00 0.00 0.00 2.57
791 2722 4.479158 TCCTTGCACTGGGTTTCTTAAAT 58.521 39.130 5.23 0.00 0.00 1.40
802 2733 1.073923 AGGTTAGGTTCCTTGCACTGG 59.926 52.381 0.00 0.00 30.18 4.00
838 2769 3.522343 GGTTCCATGGTAAGTAGGGAAGT 59.478 47.826 12.58 0.00 38.24 3.01
967 2898 7.502561 GGCTTACAAAAGTGAGGGAATATGTAT 59.497 37.037 0.00 0.00 34.99 2.29
1289 3231 2.820767 CTTCTCCGACACCCACGAGC 62.821 65.000 0.00 0.00 0.00 5.03
1374 3316 3.475494 TCACGCCACACCACCTGT 61.475 61.111 0.00 0.00 0.00 4.00
1514 3473 0.806241 TCTGCTACGTACATGCACGA 59.194 50.000 24.68 7.80 44.69 4.35
1533 3492 9.612620 GCTTTATTCTTTATGCAAATATACGCT 57.387 29.630 0.00 0.00 0.00 5.07
1543 3502 6.017934 GTGATCTCGGCTTTATTCTTTATGCA 60.018 38.462 0.00 0.00 0.00 3.96
1587 3546 6.963322 ACCTTGAATATCTCCTGCTAAAGTT 58.037 36.000 0.00 0.00 0.00 2.66
1602 3561 7.983166 AGGGTAACTACACATACCTTGAATA 57.017 36.000 2.34 0.00 41.13 1.75
1622 3581 7.490657 TGATAGTACAACTTACATGAAGGGT 57.509 36.000 0.00 5.01 39.74 4.34
1623 3582 8.830580 CAATGATAGTACAACTTACATGAAGGG 58.169 37.037 0.00 0.00 39.74 3.95
1624 3583 9.383519 ACAATGATAGTACAACTTACATGAAGG 57.616 33.333 0.00 0.00 39.74 3.46
1722 3709 9.430399 TGTTAAAGCTATACACCTAGGTTATCT 57.570 33.333 13.15 0.34 38.21 1.98
1727 3714 9.828039 GTTAATGTTAAAGCTATACACCTAGGT 57.172 33.333 9.21 9.21 0.00 3.08
1801 3800 2.058675 CTCGGAAGGTGTGGGAGTT 58.941 57.895 0.00 0.00 0.00 3.01
1802 3801 2.584391 GCTCGGAAGGTGTGGGAGT 61.584 63.158 0.00 0.00 0.00 3.85
1803 3802 2.266055 GCTCGGAAGGTGTGGGAG 59.734 66.667 0.00 0.00 0.00 4.30
1808 3807 4.681978 GTGCGGCTCGGAAGGTGT 62.682 66.667 0.00 0.00 0.00 4.16
1847 3846 4.679373 ATTAGCGAGGGATGCTATATGG 57.321 45.455 0.00 0.00 43.90 2.74
1862 3861 2.640316 AGCCCCTTTTCCTATTAGCG 57.360 50.000 0.00 0.00 0.00 4.26
1863 3862 6.015350 GGATAAAAGCCCCTTTTCCTATTAGC 60.015 42.308 6.25 0.00 41.88 3.09
1864 3863 6.493802 GGGATAAAAGCCCCTTTTCCTATTAG 59.506 42.308 6.25 0.00 41.88 1.73
1865 3864 6.378745 GGGATAAAAGCCCCTTTTCCTATTA 58.621 40.000 6.25 0.00 41.88 0.98
1866 3865 5.216622 GGGATAAAAGCCCCTTTTCCTATT 58.783 41.667 6.25 0.00 41.88 1.73
1867 3866 4.691655 CGGGATAAAAGCCCCTTTTCCTAT 60.692 45.833 6.25 0.00 41.88 2.57
1868 3867 3.372241 CGGGATAAAAGCCCCTTTTCCTA 60.372 47.826 6.25 0.00 41.88 2.94
1869 3868 2.623239 CGGGATAAAAGCCCCTTTTCCT 60.623 50.000 6.25 0.00 41.88 3.36
1870 3869 1.754803 CGGGATAAAAGCCCCTTTTCC 59.245 52.381 6.25 3.66 41.88 3.13
1871 3870 1.754803 CCGGGATAAAAGCCCCTTTTC 59.245 52.381 6.25 0.00 41.88 2.29
1872 3871 1.078159 ACCGGGATAAAAGCCCCTTTT 59.922 47.619 6.32 7.91 44.46 2.27
1873 3872 0.708209 ACCGGGATAAAAGCCCCTTT 59.292 50.000 6.32 0.00 42.92 3.11
1874 3873 0.708209 AACCGGGATAAAAGCCCCTT 59.292 50.000 6.32 0.00 42.92 3.95
1875 3874 0.708209 AAACCGGGATAAAAGCCCCT 59.292 50.000 6.32 0.00 42.92 4.79
1876 3875 0.821517 CAAACCGGGATAAAAGCCCC 59.178 55.000 6.32 0.00 42.92 5.80
1877 3876 1.552578 ACAAACCGGGATAAAAGCCC 58.447 50.000 6.32 0.00 42.41 5.19
1878 3877 3.129813 CCTTACAAACCGGGATAAAAGCC 59.870 47.826 6.32 0.00 0.00 4.35
1879 3878 3.129813 CCCTTACAAACCGGGATAAAAGC 59.870 47.826 6.32 0.00 40.55 3.51
1880 3879 4.338012 ACCCTTACAAACCGGGATAAAAG 58.662 43.478 6.32 3.70 40.55 2.27
1881 3880 4.043184 AGACCCTTACAAACCGGGATAAAA 59.957 41.667 6.32 0.00 40.55 1.52
1882 3881 3.588396 AGACCCTTACAAACCGGGATAAA 59.412 43.478 6.32 0.00 40.55 1.40
1883 3882 3.183801 AGACCCTTACAAACCGGGATAA 58.816 45.455 6.32 0.00 40.55 1.75
1884 3883 2.836667 AGACCCTTACAAACCGGGATA 58.163 47.619 6.32 0.00 40.55 2.59
1885 3884 1.665137 AGACCCTTACAAACCGGGAT 58.335 50.000 6.32 0.00 40.55 3.85
1886 3885 1.437397 AAGACCCTTACAAACCGGGA 58.563 50.000 6.32 0.00 40.55 5.14
1887 3886 2.281539 AAAGACCCTTACAAACCGGG 57.718 50.000 6.32 0.00 43.79 5.73
1888 3887 2.953648 ACAAAAGACCCTTACAAACCGG 59.046 45.455 0.00 0.00 0.00 5.28
1889 3888 3.004002 GGACAAAAGACCCTTACAAACCG 59.996 47.826 0.00 0.00 0.00 4.44
1890 3889 3.319972 GGGACAAAAGACCCTTACAAACC 59.680 47.826 0.00 0.00 42.56 3.27
1891 3890 3.004002 CGGGACAAAAGACCCTTACAAAC 59.996 47.826 0.00 0.00 43.57 2.93
1892 3891 3.215975 CGGGACAAAAGACCCTTACAAA 58.784 45.455 0.00 0.00 43.57 2.83
1893 3892 2.487625 CCGGGACAAAAGACCCTTACAA 60.488 50.000 0.00 0.00 43.57 2.41
1894 3893 1.072648 CCGGGACAAAAGACCCTTACA 59.927 52.381 0.00 0.00 43.57 2.41
1895 3894 1.072806 ACCGGGACAAAAGACCCTTAC 59.927 52.381 6.32 0.00 43.57 2.34
1896 3895 1.437397 ACCGGGACAAAAGACCCTTA 58.563 50.000 6.32 0.00 43.57 2.69
1897 3896 0.554305 AACCGGGACAAAAGACCCTT 59.446 50.000 6.32 0.00 43.57 3.95
1898 3897 0.554305 AAACCGGGACAAAAGACCCT 59.446 50.000 6.32 0.00 43.57 4.34
1899 3898 1.405872 AAAACCGGGACAAAAGACCC 58.594 50.000 6.32 0.00 42.43 4.46
1900 3899 2.427812 TCAAAAACCGGGACAAAAGACC 59.572 45.455 6.32 0.00 0.00 3.85
1901 3900 3.786516 TCAAAAACCGGGACAAAAGAC 57.213 42.857 6.32 0.00 0.00 3.01
1902 3901 4.496360 GTTTCAAAAACCGGGACAAAAGA 58.504 39.130 6.32 0.00 0.00 2.52
1903 3902 3.304826 CGTTTCAAAAACCGGGACAAAAG 59.695 43.478 6.32 0.00 0.00 2.27
1904 3903 3.251571 CGTTTCAAAAACCGGGACAAAA 58.748 40.909 6.32 0.00 0.00 2.44
1905 3904 2.416972 CCGTTTCAAAAACCGGGACAAA 60.417 45.455 6.32 0.00 36.84 2.83
1906 3905 1.134560 CCGTTTCAAAAACCGGGACAA 59.865 47.619 6.32 0.00 36.84 3.18
1907 3906 0.739561 CCGTTTCAAAAACCGGGACA 59.260 50.000 6.32 0.00 36.84 4.02
1908 3907 3.555401 CCGTTTCAAAAACCGGGAC 57.445 52.632 6.32 0.00 36.84 4.46
1911 3910 1.026584 AGTCCCGTTTCAAAAACCGG 58.973 50.000 0.00 0.00 40.12 5.28
1912 3911 3.967203 TTAGTCCCGTTTCAAAAACCG 57.033 42.857 0.00 0.00 0.00 4.44
1913 3912 4.500205 CCCTTTAGTCCCGTTTCAAAAACC 60.500 45.833 0.00 0.00 0.00 3.27
1914 3913 4.098349 ACCCTTTAGTCCCGTTTCAAAAAC 59.902 41.667 0.00 0.00 0.00 2.43
1915 3914 4.279982 ACCCTTTAGTCCCGTTTCAAAAA 58.720 39.130 0.00 0.00 0.00 1.94
1916 3915 3.884693 GACCCTTTAGTCCCGTTTCAAAA 59.115 43.478 0.00 0.00 0.00 2.44
1917 3916 3.479489 GACCCTTTAGTCCCGTTTCAAA 58.521 45.455 0.00 0.00 0.00 2.69
1918 3917 2.548493 CGACCCTTTAGTCCCGTTTCAA 60.548 50.000 0.00 0.00 32.91 2.69
1919 3918 1.001181 CGACCCTTTAGTCCCGTTTCA 59.999 52.381 0.00 0.00 32.91 2.69
1920 3919 1.001293 ACGACCCTTTAGTCCCGTTTC 59.999 52.381 0.00 0.00 32.91 2.78
1921 3920 1.051008 ACGACCCTTTAGTCCCGTTT 58.949 50.000 0.00 0.00 32.91 3.60
1922 3921 1.051008 AACGACCCTTTAGTCCCGTT 58.949 50.000 0.00 0.00 35.74 4.44
1923 3922 1.546029 GTAACGACCCTTTAGTCCCGT 59.454 52.381 0.00 0.00 32.91 5.28
1924 3923 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
1925 3924 4.273318 TCTAGTAACGACCCTTTAGTCCC 58.727 47.826 0.00 0.00 32.91 4.46
1926 3925 4.202000 GCTCTAGTAACGACCCTTTAGTCC 60.202 50.000 0.00 0.00 32.91 3.85
1927 3926 4.202000 GGCTCTAGTAACGACCCTTTAGTC 60.202 50.000 0.00 0.00 0.00 2.59
1928 3927 3.698539 GGCTCTAGTAACGACCCTTTAGT 59.301 47.826 0.00 0.00 0.00 2.24
1929 3928 3.067883 GGGCTCTAGTAACGACCCTTTAG 59.932 52.174 0.00 0.00 34.34 1.85
1930 3929 3.026694 GGGCTCTAGTAACGACCCTTTA 58.973 50.000 0.00 0.00 34.34 1.85
1931 3930 1.829849 GGGCTCTAGTAACGACCCTTT 59.170 52.381 0.00 0.00 34.34 3.11
1932 3931 1.006878 AGGGCTCTAGTAACGACCCTT 59.993 52.381 0.00 0.00 45.55 3.95
1933 3932 0.630134 AGGGCTCTAGTAACGACCCT 59.370 55.000 0.00 0.00 42.97 4.34
1934 3933 2.355010 TAGGGCTCTAGTAACGACCC 57.645 55.000 0.00 0.00 37.63 4.46
1935 3934 3.255395 GGATTAGGGCTCTAGTAACGACC 59.745 52.174 0.00 0.00 0.00 4.79
1936 3935 4.143543 AGGATTAGGGCTCTAGTAACGAC 58.856 47.826 0.00 0.00 0.00 4.34
1937 3936 4.450305 AGGATTAGGGCTCTAGTAACGA 57.550 45.455 0.00 0.00 0.00 3.85
1938 3937 5.532664 AAAGGATTAGGGCTCTAGTAACG 57.467 43.478 0.00 0.00 0.00 3.18
1939 3938 7.255906 GGACTAAAGGATTAGGGCTCTAGTAAC 60.256 44.444 0.00 0.00 42.39 2.50
1940 3939 6.781507 GGACTAAAGGATTAGGGCTCTAGTAA 59.218 42.308 0.00 0.00 42.39 2.24
1941 3940 6.313324 GGACTAAAGGATTAGGGCTCTAGTA 58.687 44.000 0.00 0.00 42.39 1.82
1942 3941 5.149239 GGACTAAAGGATTAGGGCTCTAGT 58.851 45.833 0.00 0.00 42.39 2.57
1943 3942 4.528987 GGGACTAAAGGATTAGGGCTCTAG 59.471 50.000 0.00 0.00 42.39 2.43
1944 3943 4.490706 GGGACTAAAGGATTAGGGCTCTA 58.509 47.826 0.00 0.00 42.39 2.43
1945 3944 3.319220 GGGACTAAAGGATTAGGGCTCT 58.681 50.000 0.00 0.00 42.39 4.09
1946 3945 2.037381 CGGGACTAAAGGATTAGGGCTC 59.963 54.545 1.17 0.00 42.39 4.70
1947 3946 2.047830 CGGGACTAAAGGATTAGGGCT 58.952 52.381 1.17 0.00 42.39 5.19
1948 3947 1.071857 CCGGGACTAAAGGATTAGGGC 59.928 57.143 0.00 0.00 42.39 5.19
1949 3948 2.405559 ACCGGGACTAAAGGATTAGGG 58.594 52.381 6.32 0.00 42.39 3.53
1950 3949 3.710165 AGAACCGGGACTAAAGGATTAGG 59.290 47.826 6.32 0.00 42.39 2.69
1951 3950 5.354842 AAGAACCGGGACTAAAGGATTAG 57.645 43.478 6.32 0.00 43.48 1.73
1952 3951 5.721000 TGTAAGAACCGGGACTAAAGGATTA 59.279 40.000 6.32 0.00 0.00 1.75
1953 3952 4.533311 TGTAAGAACCGGGACTAAAGGATT 59.467 41.667 6.32 0.00 0.00 3.01
1954 3953 4.081254 GTGTAAGAACCGGGACTAAAGGAT 60.081 45.833 6.32 0.00 0.00 3.24
1955 3954 3.259123 GTGTAAGAACCGGGACTAAAGGA 59.741 47.826 6.32 0.00 0.00 3.36
1956 3955 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
1957 3956 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
1958 3957 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
1959 3958 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
1960 3959 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
1961 3960 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
1962 3961 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
1963 3962 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
1969 3968 1.000060 CTGTCCCGGTTCGTGTAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
1970 3969 0.599558 CTGTCCCGGTTCGTGTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
1971 3970 0.599558 TCTGTCCCGGTTCGTGTAAG 59.400 55.000 0.00 0.00 0.00 2.34
1972 3971 1.000060 CTTCTGTCCCGGTTCGTGTAA 60.000 52.381 0.00 0.00 0.00 2.41
1973 3972 0.599558 CTTCTGTCCCGGTTCGTGTA 59.400 55.000 0.00 0.00 0.00 2.90
1974 3973 1.366366 CTTCTGTCCCGGTTCGTGT 59.634 57.895 0.00 0.00 0.00 4.49
1975 3974 1.374252 CCTTCTGTCCCGGTTCGTG 60.374 63.158 0.00 0.00 0.00 4.35
1976 3975 1.813728 GACCTTCTGTCCCGGTTCGT 61.814 60.000 0.00 0.00 38.09 3.85
1977 3976 1.080025 GACCTTCTGTCCCGGTTCG 60.080 63.158 0.00 0.00 38.09 3.95
1985 3984 0.038159 CACGTGGAGGACCTTCTGTC 60.038 60.000 7.95 0.00 43.67 3.51
1986 3985 1.472662 CCACGTGGAGGACCTTCTGT 61.473 60.000 31.31 0.00 37.39 3.41
1987 3986 1.293498 CCACGTGGAGGACCTTCTG 59.707 63.158 31.31 0.00 37.39 3.02
1988 3987 2.584391 GCCACGTGGAGGACCTTCT 61.584 63.158 38.30 0.00 37.39 2.85
1989 3988 2.047179 GCCACGTGGAGGACCTTC 60.047 66.667 38.30 13.83 37.39 3.46
1990 3989 3.637273 GGCCACGTGGAGGACCTT 61.637 66.667 38.30 0.00 37.39 3.50
2031 4030 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
2032 4031 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
2033 4032 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
2034 4033 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
2035 4034 2.561037 GCACCAACCGGGACCAAAG 61.561 63.158 6.32 0.00 41.15 2.77
2036 4035 2.519780 GCACCAACCGGGACCAAA 60.520 61.111 6.32 0.00 41.15 3.28
2037 4036 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
2053 4052 1.448985 CTATTGGTCACGGTTGGTGG 58.551 55.000 0.00 0.00 46.96 4.61
2055 4054 0.322187 GCCTATTGGTCACGGTTGGT 60.322 55.000 0.00 0.00 35.27 3.67
2056 4055 0.322098 TGCCTATTGGTCACGGTTGG 60.322 55.000 0.00 0.00 35.27 3.77
2057 4056 1.086696 CTGCCTATTGGTCACGGTTG 58.913 55.000 0.00 0.00 35.27 3.77
2058 4057 0.035439 CCTGCCTATTGGTCACGGTT 60.035 55.000 0.00 0.00 35.27 4.44
2059 4058 1.602237 CCTGCCTATTGGTCACGGT 59.398 57.895 0.00 0.00 35.27 4.83
2060 4059 1.153168 CCCTGCCTATTGGTCACGG 60.153 63.158 0.00 0.00 35.27 4.94
2061 4060 1.819632 GCCCTGCCTATTGGTCACG 60.820 63.158 0.00 0.00 35.27 4.35
2062 4061 1.453928 GGCCCTGCCTATTGGTCAC 60.454 63.158 0.00 0.00 46.69 3.67
2063 4062 3.006677 GGCCCTGCCTATTGGTCA 58.993 61.111 0.00 0.00 46.69 4.02
2073 4072 3.373565 CGGGACAAAAGGCCCTGC 61.374 66.667 4.64 0.00 42.40 4.85
2074 4073 2.676471 CCGGGACAAAAGGCCCTG 60.676 66.667 4.64 0.00 42.40 4.45
2075 4074 2.774633 AACCGGGACAAAAGGCCCT 61.775 57.895 6.32 0.00 42.40 5.19
2076 4075 2.203582 AACCGGGACAAAAGGCCC 60.204 61.111 6.32 0.00 41.11 5.80
2077 4076 2.570284 CCAACCGGGACAAAAGGCC 61.570 63.158 6.32 0.00 40.01 5.19
2078 4077 1.802337 GACCAACCGGGACAAAAGGC 61.802 60.000 6.32 0.00 41.15 4.35
2079 4078 1.176619 GGACCAACCGGGACAAAAGG 61.177 60.000 6.32 0.00 41.15 3.11
2080 4079 1.176619 GGGACCAACCGGGACAAAAG 61.177 60.000 6.32 0.00 41.15 2.27
2081 4080 1.152715 GGGACCAACCGGGACAAAA 60.153 57.895 6.32 0.00 41.15 2.44
2082 4081 2.516909 GGGACCAACCGGGACAAA 59.483 61.111 6.32 0.00 41.15 2.83
2090 4089 2.596338 CACCAACCGGGACCAACC 60.596 66.667 6.32 0.00 41.15 3.77
2091 4090 2.596338 CCACCAACCGGGACCAAC 60.596 66.667 6.32 0.00 41.15 3.77
2092 4091 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
2094 4093 2.886730 CTATGCCACCAACCGGGACC 62.887 65.000 6.32 0.00 41.15 4.46
2095 4094 1.451387 CTATGCCACCAACCGGGAC 60.451 63.158 6.32 0.00 41.15 4.46
2096 4095 2.675242 CCTATGCCACCAACCGGGA 61.675 63.158 6.32 0.00 41.15 5.14
2097 4096 2.124320 CCTATGCCACCAACCGGG 60.124 66.667 6.32 0.00 44.81 5.73
2098 4097 2.828549 GCCTATGCCACCAACCGG 60.829 66.667 0.00 0.00 38.77 5.28
2099 4098 1.447317 GATGCCTATGCCACCAACCG 61.447 60.000 0.00 0.00 36.33 4.44
2100 4099 1.109323 GGATGCCTATGCCACCAACC 61.109 60.000 0.00 0.00 36.33 3.77
2101 4100 0.395586 TGGATGCCTATGCCACCAAC 60.396 55.000 3.58 0.00 38.25 3.77
2102 4101 0.395586 GTGGATGCCTATGCCACCAA 60.396 55.000 0.00 0.00 44.86 3.67
2103 4102 1.227102 GTGGATGCCTATGCCACCA 59.773 57.895 0.00 2.26 44.86 4.17
2104 4103 4.164258 GTGGATGCCTATGCCACC 57.836 61.111 0.00 0.00 44.86 4.61
2105 4104 2.546494 GCGTGGATGCCTATGCCAC 61.546 63.158 0.00 0.00 46.60 5.01
2106 4105 2.203195 GCGTGGATGCCTATGCCA 60.203 61.111 0.00 0.00 36.33 4.92
2107 4106 3.349006 CGCGTGGATGCCTATGCC 61.349 66.667 0.00 0.00 36.33 4.40
2108 4107 2.588877 ACGCGTGGATGCCTATGC 60.589 61.111 12.93 0.00 38.26 3.14
2109 4108 0.809636 TTGACGCGTGGATGCCTATG 60.810 55.000 20.70 0.00 0.00 2.23
2110 4109 0.810031 GTTGACGCGTGGATGCCTAT 60.810 55.000 20.70 0.00 0.00 2.57
2111 4110 1.447140 GTTGACGCGTGGATGCCTA 60.447 57.895 20.70 0.00 0.00 3.93
2112 4111 2.742372 GTTGACGCGTGGATGCCT 60.742 61.111 20.70 0.00 0.00 4.75
2113 4112 1.922135 AATGTTGACGCGTGGATGCC 61.922 55.000 20.70 0.06 0.00 4.40
2114 4113 0.109781 AAATGTTGACGCGTGGATGC 60.110 50.000 20.70 1.01 0.00 3.91
2115 4114 1.196581 TGAAATGTTGACGCGTGGATG 59.803 47.619 20.70 0.00 0.00 3.51
2116 4115 1.464608 CTGAAATGTTGACGCGTGGAT 59.535 47.619 20.70 0.00 0.00 3.41
2117 4116 0.865111 CTGAAATGTTGACGCGTGGA 59.135 50.000 20.70 0.43 0.00 4.02
2118 4117 0.110238 CCTGAAATGTTGACGCGTGG 60.110 55.000 20.70 2.86 0.00 4.94
2119 4118 0.110238 CCCTGAAATGTTGACGCGTG 60.110 55.000 20.70 0.00 0.00 5.34
2120 4119 1.234615 CCCCTGAAATGTTGACGCGT 61.235 55.000 13.85 13.85 0.00 6.01
2121 4120 1.501741 CCCCTGAAATGTTGACGCG 59.498 57.895 3.53 3.53 0.00 6.01
2122 4121 1.212751 GCCCCTGAAATGTTGACGC 59.787 57.895 0.00 0.00 0.00 5.19
2123 4122 0.523072 CAGCCCCTGAAATGTTGACG 59.477 55.000 0.00 0.00 32.44 4.35
2187 4186 2.883122 ACACCTAAATTAACCCCGCA 57.117 45.000 0.00 0.00 0.00 5.69
2188 4187 3.506844 TGAAACACCTAAATTAACCCCGC 59.493 43.478 0.00 0.00 0.00 6.13
2189 4188 5.907866 ATGAAACACCTAAATTAACCCCG 57.092 39.130 0.00 0.00 0.00 5.73
2199 4198 9.899661 AGCTAACACAATATATGAAACACCTAA 57.100 29.630 0.00 0.00 0.00 2.69
2201 4200 9.547753 CTAGCTAACACAATATATGAAACACCT 57.452 33.333 0.00 0.00 0.00 4.00
2202 4201 8.283291 GCTAGCTAACACAATATATGAAACACC 58.717 37.037 7.70 0.00 0.00 4.16
2203 4202 9.046296 AGCTAGCTAACACAATATATGAAACAC 57.954 33.333 17.69 0.00 0.00 3.32
2226 4225 9.825109 GAGGACACTTCTCTTTATTAATTAGCT 57.175 33.333 0.00 0.00 0.00 3.32
2227 4226 9.825109 AGAGGACACTTCTCTTTATTAATTAGC 57.175 33.333 0.00 0.00 38.32 3.09
2234 4233 9.487442 AGATAAGAGAGGACACTTCTCTTTATT 57.513 33.333 23.53 13.46 45.33 1.40
2235 4234 9.131791 GAGATAAGAGAGGACACTTCTCTTTAT 57.868 37.037 23.53 16.64 45.33 1.40
2236 4235 7.558444 GGAGATAAGAGAGGACACTTCTCTTTA 59.442 40.741 23.53 13.92 45.33 1.85
2237 4236 6.379988 GGAGATAAGAGAGGACACTTCTCTTT 59.620 42.308 23.53 14.89 45.33 2.52
2239 4238 5.445964 GGAGATAAGAGAGGACACTTCTCT 58.554 45.833 7.43 7.43 43.56 3.10
2240 4239 4.274950 CGGAGATAAGAGAGGACACTTCTC 59.725 50.000 0.00 0.00 0.00 2.87
2241 4240 4.204012 CGGAGATAAGAGAGGACACTTCT 58.796 47.826 0.00 0.00 0.00 2.85
2242 4241 3.949113 ACGGAGATAAGAGAGGACACTTC 59.051 47.826 0.00 0.00 0.00 3.01
2243 4242 3.697045 CACGGAGATAAGAGAGGACACTT 59.303 47.826 0.00 0.00 0.00 3.16
2244 4243 3.283751 CACGGAGATAAGAGAGGACACT 58.716 50.000 0.00 0.00 0.00 3.55
2245 4244 2.223618 GCACGGAGATAAGAGAGGACAC 60.224 54.545 0.00 0.00 0.00 3.67
2246 4245 2.025155 GCACGGAGATAAGAGAGGACA 58.975 52.381 0.00 0.00 0.00 4.02
2247 4246 2.303175 AGCACGGAGATAAGAGAGGAC 58.697 52.381 0.00 0.00 0.00 3.85
2248 4247 2.690497 CAAGCACGGAGATAAGAGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
2249 4248 2.223923 CCAAGCACGGAGATAAGAGAGG 60.224 54.545 0.00 0.00 0.00 3.69
2250 4249 2.428890 ACCAAGCACGGAGATAAGAGAG 59.571 50.000 0.00 0.00 0.00 3.20
2251 4250 2.427453 GACCAAGCACGGAGATAAGAGA 59.573 50.000 0.00 0.00 0.00 3.10
2252 4251 2.796383 CGACCAAGCACGGAGATAAGAG 60.796 54.545 0.00 0.00 0.00 2.85
2253 4252 1.134367 CGACCAAGCACGGAGATAAGA 59.866 52.381 0.00 0.00 0.00 2.10
2254 4253 1.134367 TCGACCAAGCACGGAGATAAG 59.866 52.381 0.00 0.00 0.00 1.73
2255 4254 1.135199 GTCGACCAAGCACGGAGATAA 60.135 52.381 3.51 0.00 0.00 1.75
2256 4255 0.454600 GTCGACCAAGCACGGAGATA 59.545 55.000 3.51 0.00 0.00 1.98
2257 4256 1.215647 GTCGACCAAGCACGGAGAT 59.784 57.895 3.51 0.00 0.00 2.75
2258 4257 2.649034 GTCGACCAAGCACGGAGA 59.351 61.111 3.51 0.00 0.00 3.71
2259 4258 2.805353 CGTCGACCAAGCACGGAG 60.805 66.667 10.58 0.00 0.00 4.63
2261 4260 3.620300 TAGCGTCGACCAAGCACGG 62.620 63.158 10.58 0.00 34.04 4.94
2262 4261 2.126618 TAGCGTCGACCAAGCACG 60.127 61.111 10.58 0.00 36.60 5.34
2263 4262 2.434134 CGTAGCGTCGACCAAGCAC 61.434 63.158 10.58 7.92 0.00 4.40
2264 4263 1.576451 TACGTAGCGTCGACCAAGCA 61.576 55.000 10.58 0.00 41.54 3.91
2265 4264 1.130458 GTACGTAGCGTCGACCAAGC 61.130 60.000 10.58 7.95 41.54 4.01
2266 4265 0.445436 AGTACGTAGCGTCGACCAAG 59.555 55.000 10.58 0.00 41.54 3.61
2267 4266 1.720805 TAGTACGTAGCGTCGACCAA 58.279 50.000 10.58 0.00 41.54 3.67
2268 4267 1.939974 ATAGTACGTAGCGTCGACCA 58.060 50.000 10.58 0.00 41.54 4.02
2269 4268 4.259056 CGTATATAGTACGTAGCGTCGACC 60.259 50.000 10.58 2.76 41.54 4.79
2270 4269 4.790823 CGTATATAGTACGTAGCGTCGAC 58.209 47.826 5.18 5.18 41.54 4.20
2280 4279 7.264221 AGTCCTCTCCATACGTATATAGTACG 58.736 42.308 7.96 6.11 45.44 3.67
2281 4280 9.748708 CTAGTCCTCTCCATACGTATATAGTAC 57.251 40.741 7.96 8.69 0.00 2.73
2282 4281 9.706529 TCTAGTCCTCTCCATACGTATATAGTA 57.293 37.037 7.96 0.00 0.00 1.82
2283 4282 8.477256 GTCTAGTCCTCTCCATACGTATATAGT 58.523 40.741 7.96 0.00 0.00 2.12
2284 4283 8.476447 TGTCTAGTCCTCTCCATACGTATATAG 58.524 40.741 7.96 8.68 0.00 1.31
2285 4284 8.256605 GTGTCTAGTCCTCTCCATACGTATATA 58.743 40.741 7.96 0.00 0.00 0.86
2286 4285 7.104939 GTGTCTAGTCCTCTCCATACGTATAT 58.895 42.308 7.96 0.00 0.00 0.86
2287 4286 6.462500 GTGTCTAGTCCTCTCCATACGTATA 58.538 44.000 7.96 0.00 0.00 1.47
2288 4287 5.307204 GTGTCTAGTCCTCTCCATACGTAT 58.693 45.833 1.14 1.14 0.00 3.06
2289 4288 4.701765 GTGTCTAGTCCTCTCCATACGTA 58.298 47.826 0.00 0.00 0.00 3.57
2290 4289 3.543665 GTGTCTAGTCCTCTCCATACGT 58.456 50.000 0.00 0.00 0.00 3.57
2291 4290 2.544686 CGTGTCTAGTCCTCTCCATACG 59.455 54.545 0.00 0.00 0.00 3.06
2292 4291 2.291190 GCGTGTCTAGTCCTCTCCATAC 59.709 54.545 0.00 0.00 0.00 2.39
2293 4292 2.172930 AGCGTGTCTAGTCCTCTCCATA 59.827 50.000 0.00 0.00 0.00 2.74
2294 4293 1.064314 AGCGTGTCTAGTCCTCTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
2295 4294 0.328592 AGCGTGTCTAGTCCTCTCCA 59.671 55.000 0.00 0.00 0.00 3.86
2296 4295 2.215196 CTAGCGTGTCTAGTCCTCTCC 58.785 57.143 0.00 0.00 39.91 3.71
2297 4296 1.600485 GCTAGCGTGTCTAGTCCTCTC 59.400 57.143 0.00 0.00 45.22 3.20
2298 4297 1.210967 AGCTAGCGTGTCTAGTCCTCT 59.789 52.381 9.55 0.00 45.22 3.69
2299 4298 1.670791 AGCTAGCGTGTCTAGTCCTC 58.329 55.000 9.55 0.00 45.22 3.71
2300 4299 2.171027 ACTAGCTAGCGTGTCTAGTCCT 59.829 50.000 20.91 0.00 45.22 3.85
2301 4300 2.563702 ACTAGCTAGCGTGTCTAGTCC 58.436 52.381 20.91 0.00 45.22 3.85
2302 4301 5.466058 TGATTACTAGCTAGCGTGTCTAGTC 59.534 44.000 20.91 10.65 45.22 2.59
2303 4302 5.366460 TGATTACTAGCTAGCGTGTCTAGT 58.634 41.667 20.91 16.03 45.22 2.57
2304 4303 5.926214 TGATTACTAGCTAGCGTGTCTAG 57.074 43.478 20.91 11.56 46.01 2.43
2305 4304 6.688637 TTTGATTACTAGCTAGCGTGTCTA 57.311 37.500 20.91 8.08 0.00 2.59
2306 4305 5.578005 TTTGATTACTAGCTAGCGTGTCT 57.422 39.130 20.91 2.54 0.00 3.41
2307 4306 5.977725 TCATTTGATTACTAGCTAGCGTGTC 59.022 40.000 20.91 13.47 0.00 3.67
2308 4307 5.902681 TCATTTGATTACTAGCTAGCGTGT 58.097 37.500 20.91 14.25 0.00 4.49
2309 4308 6.074088 CCTTCATTTGATTACTAGCTAGCGTG 60.074 42.308 20.91 8.74 0.00 5.34
2310 4309 5.986135 CCTTCATTTGATTACTAGCTAGCGT 59.014 40.000 20.91 5.75 0.00 5.07
2311 4310 6.216569 TCCTTCATTTGATTACTAGCTAGCG 58.783 40.000 20.91 0.00 0.00 4.26
2312 4311 8.338986 GTTTCCTTCATTTGATTACTAGCTAGC 58.661 37.037 20.91 6.62 0.00 3.42
2313 4312 9.383519 TGTTTCCTTCATTTGATTACTAGCTAG 57.616 33.333 19.44 19.44 0.00 3.42
2314 4313 9.383519 CTGTTTCCTTCATTTGATTACTAGCTA 57.616 33.333 0.00 0.00 0.00 3.32
2315 4314 8.103305 TCTGTTTCCTTCATTTGATTACTAGCT 58.897 33.333 0.00 0.00 0.00 3.32
2316 4315 8.268850 TCTGTTTCCTTCATTTGATTACTAGC 57.731 34.615 0.00 0.00 0.00 3.42
2319 4318 8.924511 TCTTCTGTTTCCTTCATTTGATTACT 57.075 30.769 0.00 0.00 0.00 2.24
2320 4319 9.780413 GATCTTCTGTTTCCTTCATTTGATTAC 57.220 33.333 0.00 0.00 0.00 1.89
2321 4320 8.668353 CGATCTTCTGTTTCCTTCATTTGATTA 58.332 33.333 0.00 0.00 0.00 1.75
2322 4321 7.175641 ACGATCTTCTGTTTCCTTCATTTGATT 59.824 33.333 0.00 0.00 0.00 2.57
2323 4322 6.656693 ACGATCTTCTGTTTCCTTCATTTGAT 59.343 34.615 0.00 0.00 0.00 2.57
2324 4323 5.997746 ACGATCTTCTGTTTCCTTCATTTGA 59.002 36.000 0.00 0.00 0.00 2.69
2325 4324 6.073058 TGACGATCTTCTGTTTCCTTCATTTG 60.073 38.462 0.48 0.00 0.00 2.32
2326 4325 5.997746 TGACGATCTTCTGTTTCCTTCATTT 59.002 36.000 0.48 0.00 0.00 2.32
2327 4326 5.551233 TGACGATCTTCTGTTTCCTTCATT 58.449 37.500 0.48 0.00 0.00 2.57
2328 4327 5.152623 TGACGATCTTCTGTTTCCTTCAT 57.847 39.130 0.48 0.00 0.00 2.57
2329 4328 4.600692 TGACGATCTTCTGTTTCCTTCA 57.399 40.909 0.48 0.00 0.00 3.02
2330 4329 5.171476 TCATGACGATCTTCTGTTTCCTTC 58.829 41.667 0.48 0.00 0.00 3.46
2331 4330 5.152623 TCATGACGATCTTCTGTTTCCTT 57.847 39.130 0.48 0.00 0.00 3.36
2332 4331 4.808414 TCATGACGATCTTCTGTTTCCT 57.192 40.909 0.48 0.00 0.00 3.36
2333 4332 4.690748 TGTTCATGACGATCTTCTGTTTCC 59.309 41.667 0.00 0.00 0.00 3.13
2334 4333 5.845985 TGTTCATGACGATCTTCTGTTTC 57.154 39.130 0.00 0.00 0.00 2.78
2335 4334 7.466455 GCATATGTTCATGACGATCTTCTGTTT 60.466 37.037 4.29 0.00 0.00 2.83
2336 4335 6.018425 GCATATGTTCATGACGATCTTCTGTT 60.018 38.462 4.29 0.00 0.00 3.16
2337 4336 5.464722 GCATATGTTCATGACGATCTTCTGT 59.535 40.000 4.29 0.00 0.00 3.41
2338 4337 5.464389 TGCATATGTTCATGACGATCTTCTG 59.536 40.000 4.29 0.00 0.00 3.02
2339 4338 5.604565 TGCATATGTTCATGACGATCTTCT 58.395 37.500 4.29 0.00 0.00 2.85
2340 4339 5.912360 TGCATATGTTCATGACGATCTTC 57.088 39.130 4.29 0.00 0.00 2.87
2341 4340 6.930722 TGTATGCATATGTTCATGACGATCTT 59.069 34.615 10.16 0.00 0.00 2.40
2342 4341 6.458210 TGTATGCATATGTTCATGACGATCT 58.542 36.000 10.16 0.00 0.00 2.75
2343 4342 6.587608 TCTGTATGCATATGTTCATGACGATC 59.412 38.462 10.16 0.00 0.00 3.69
2344 4343 6.458210 TCTGTATGCATATGTTCATGACGAT 58.542 36.000 10.16 0.00 0.00 3.73
2345 4344 5.841810 TCTGTATGCATATGTTCATGACGA 58.158 37.500 10.16 0.00 0.00 4.20
2346 4345 5.922544 TCTCTGTATGCATATGTTCATGACG 59.077 40.000 10.16 0.00 0.00 4.35
2347 4346 7.150640 TCTCTCTGTATGCATATGTTCATGAC 58.849 38.462 10.16 0.00 0.00 3.06
2348 4347 7.294017 TCTCTCTGTATGCATATGTTCATGA 57.706 36.000 10.16 0.00 0.00 3.07
2349 4348 7.656542 ACTTCTCTCTGTATGCATATGTTCATG 59.343 37.037 10.16 0.33 0.00 3.07
2350 4349 7.656542 CACTTCTCTCTGTATGCATATGTTCAT 59.343 37.037 10.16 2.99 0.00 2.57
2351 4350 6.982724 CACTTCTCTCTGTATGCATATGTTCA 59.017 38.462 10.16 2.13 0.00 3.18
2352 4351 7.205992 TCACTTCTCTCTGTATGCATATGTTC 58.794 38.462 10.16 0.00 0.00 3.18
2353 4352 7.117285 TCACTTCTCTCTGTATGCATATGTT 57.883 36.000 10.16 0.00 0.00 2.71
2354 4353 6.721704 TCACTTCTCTCTGTATGCATATGT 57.278 37.500 10.16 0.00 0.00 2.29
2355 4354 9.518906 GATATCACTTCTCTCTGTATGCATATG 57.481 37.037 10.16 6.52 0.00 1.78
2356 4355 8.404765 CGATATCACTTCTCTCTGTATGCATAT 58.595 37.037 10.16 0.00 0.00 1.78
2357 4356 7.607991 TCGATATCACTTCTCTCTGTATGCATA 59.392 37.037 1.16 1.16 0.00 3.14
2358 4357 6.432472 TCGATATCACTTCTCTCTGTATGCAT 59.568 38.462 3.79 3.79 0.00 3.96
2359 4358 5.765182 TCGATATCACTTCTCTCTGTATGCA 59.235 40.000 3.12 0.00 0.00 3.96
2360 4359 6.083630 GTCGATATCACTTCTCTCTGTATGC 58.916 44.000 3.12 0.00 0.00 3.14
2361 4360 6.205658 TGGTCGATATCACTTCTCTCTGTATG 59.794 42.308 3.12 0.00 0.00 2.39
2362 4361 6.205853 GTGGTCGATATCACTTCTCTCTGTAT 59.794 42.308 3.12 0.00 33.64 2.29
2363 4362 5.527951 GTGGTCGATATCACTTCTCTCTGTA 59.472 44.000 3.12 0.00 33.64 2.74
2364 4363 4.336993 GTGGTCGATATCACTTCTCTCTGT 59.663 45.833 3.12 0.00 33.64 3.41
2365 4364 4.261405 GGTGGTCGATATCACTTCTCTCTG 60.261 50.000 3.12 0.00 36.90 3.35
2366 4365 3.886505 GGTGGTCGATATCACTTCTCTCT 59.113 47.826 3.12 0.00 36.90 3.10
2367 4366 3.886505 AGGTGGTCGATATCACTTCTCTC 59.113 47.826 3.12 0.74 36.90 3.20
2368 4367 3.886505 GAGGTGGTCGATATCACTTCTCT 59.113 47.826 15.82 6.90 39.21 3.10
2369 4368 4.231718 GAGGTGGTCGATATCACTTCTC 57.768 50.000 15.82 11.24 39.21 2.87
2370 4369 3.904717 AGAGGTGGTCGATATCACTTCT 58.095 45.455 18.29 18.29 45.56 2.85
2371 4370 3.004944 GGAGAGGTGGTCGATATCACTTC 59.995 52.174 15.52 15.52 41.84 3.01
2372 4371 2.959707 GGAGAGGTGGTCGATATCACTT 59.040 50.000 3.12 8.14 36.90 3.16
2373 4372 2.175931 AGGAGAGGTGGTCGATATCACT 59.824 50.000 3.12 0.81 36.90 3.41
2374 4373 2.588620 AGGAGAGGTGGTCGATATCAC 58.411 52.381 3.12 7.65 35.87 3.06
2375 4374 3.117474 AGAAGGAGAGGTGGTCGATATCA 60.117 47.826 3.12 0.00 0.00 2.15
2376 4375 3.492337 AGAAGGAGAGGTGGTCGATATC 58.508 50.000 0.00 0.00 0.00 1.63
2377 4376 3.139397 AGAGAAGGAGAGGTGGTCGATAT 59.861 47.826 0.00 0.00 0.00 1.63
2378 4377 2.510382 AGAGAAGGAGAGGTGGTCGATA 59.490 50.000 0.00 0.00 0.00 2.92
2379 4378 1.286553 AGAGAAGGAGAGGTGGTCGAT 59.713 52.381 0.00 0.00 0.00 3.59
2380 4379 0.699399 AGAGAAGGAGAGGTGGTCGA 59.301 55.000 0.00 0.00 0.00 4.20
2381 4380 0.814457 CAGAGAAGGAGAGGTGGTCG 59.186 60.000 0.00 0.00 0.00 4.79
2382 4381 2.099405 CTCAGAGAAGGAGAGGTGGTC 58.901 57.143 0.00 0.00 34.24 4.02
2383 4382 1.713647 TCTCAGAGAAGGAGAGGTGGT 59.286 52.381 0.00 0.00 36.52 4.16
2384 4383 2.523325 TCTCAGAGAAGGAGAGGTGG 57.477 55.000 0.00 0.00 36.52 4.61
2389 4388 4.277476 GACCAATCTCTCAGAGAAGGAGA 58.723 47.826 25.76 8.00 42.27 3.71
2390 4389 3.066621 CGACCAATCTCTCAGAGAAGGAG 59.933 52.174 25.76 17.31 42.27 3.69
2391 4390 3.020274 CGACCAATCTCTCAGAGAAGGA 58.980 50.000 25.76 7.73 42.27 3.36
2392 4391 3.020274 TCGACCAATCTCTCAGAGAAGG 58.980 50.000 20.00 20.00 42.27 3.46
2393 4392 4.082517 TGTTCGACCAATCTCTCAGAGAAG 60.083 45.833 8.90 4.47 42.27 2.85
2394 4393 3.826729 TGTTCGACCAATCTCTCAGAGAA 59.173 43.478 8.90 0.00 42.27 2.87
2395 4394 3.421844 TGTTCGACCAATCTCTCAGAGA 58.578 45.455 6.90 6.90 43.20 3.10
2396 4395 3.857549 TGTTCGACCAATCTCTCAGAG 57.142 47.619 0.00 0.00 0.00 3.35
2397 4396 3.320826 TGTTGTTCGACCAATCTCTCAGA 59.679 43.478 0.00 0.00 0.00 3.27
2398 4397 3.653344 TGTTGTTCGACCAATCTCTCAG 58.347 45.455 0.00 0.00 0.00 3.35
2399 4398 3.744238 TGTTGTTCGACCAATCTCTCA 57.256 42.857 0.00 0.00 0.00 3.27
2400 4399 4.058817 ACTTGTTGTTCGACCAATCTCTC 58.941 43.478 0.00 0.00 0.00 3.20
2401 4400 4.073293 ACTTGTTGTTCGACCAATCTCT 57.927 40.909 0.00 0.00 0.00 3.10
2402 4401 4.773510 GAACTTGTTGTTCGACCAATCTC 58.226 43.478 0.00 0.00 44.49 2.75
2403 4402 4.813296 GAACTTGTTGTTCGACCAATCT 57.187 40.909 0.00 0.00 44.49 2.40
2413 4412 7.861372 CGGATAGATATACGAGAACTTGTTGTT 59.139 37.037 0.00 0.00 42.53 2.83
2414 4413 7.228108 TCGGATAGATATACGAGAACTTGTTGT 59.772 37.037 3.03 0.00 43.57 3.32
2415 4414 7.582352 TCGGATAGATATACGAGAACTTGTTG 58.418 38.462 3.03 0.00 43.57 3.33
2416 4415 7.741027 TCGGATAGATATACGAGAACTTGTT 57.259 36.000 3.03 0.00 43.57 2.83
2425 4424 5.105063 CGGTAGTGTCGGATAGATATACGA 58.895 45.833 3.03 3.03 46.01 3.43
2426 4425 5.386810 CGGTAGTGTCGGATAGATATACG 57.613 47.826 0.00 0.00 41.30 3.06
2429 4428 9.694522 ATGTAGCCGGTAGTGTCGGATAGATAT 62.695 44.444 1.90 0.00 46.00 1.63
2430 4429 8.483759 ATGTAGCCGGTAGTGTCGGATAGATA 62.484 46.154 1.90 0.00 46.00 1.98
2438 4437 4.959596 ATATATGTAGCCGGTAGTGTCG 57.040 45.455 1.90 0.00 0.00 4.35
2439 4438 6.748333 TGTATATATGTAGCCGGTAGTGTC 57.252 41.667 1.90 0.00 0.00 3.67
2440 4439 7.713734 ATTGTATATATGTAGCCGGTAGTGT 57.286 36.000 1.90 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.