Multiple sequence alignment - TraesCS5D01G446500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G446500 chr5D 100.000 3653 0 0 1 3653 496911262 496907610 0.000000e+00 6746
1 TraesCS5D01G446500 chr5B 95.086 2198 82 12 618 2792 615697445 615695251 0.000000e+00 3437
2 TraesCS5D01G446500 chr5B 91.571 522 38 6 1 521 615698022 615697506 0.000000e+00 715
3 TraesCS5D01G446500 chr5A 94.340 2191 96 6 618 2792 620996197 620994019 0.000000e+00 3334
4 TraesCS5D01G446500 chr5A 94.118 510 28 2 4 512 620996811 620996303 0.000000e+00 774
5 TraesCS5D01G446500 chr2B 85.023 1549 188 23 1183 2693 182008351 182009893 0.000000e+00 1535
6 TraesCS5D01G446500 chr2A 84.114 1366 159 31 1464 2790 135199792 135198446 0.000000e+00 1267
7 TraesCS5D01G446500 chr2D 85.459 839 89 12 1869 2700 128402145 128401333 0.000000e+00 843
8 TraesCS5D01G446500 chr2D 87.821 468 36 6 2791 3237 582154997 582154530 2.500000e-146 529
9 TraesCS5D01G446500 chr3D 93.548 372 20 1 2790 3161 606297671 606298038 5.330000e-153 551
10 TraesCS5D01G446500 chr3D 91.061 358 25 3 3295 3649 606298115 606298468 9.180000e-131 477
11 TraesCS5D01G446500 chr3A 88.864 449 19 10 2869 3305 737972162 737971733 1.160000e-144 523
12 TraesCS5D01G446500 chr3A 88.952 353 23 8 3302 3652 737971417 737971079 4.360000e-114 422
13 TraesCS5D01G446500 chr3A 97.561 82 2 0 2790 2871 737972401 737972320 1.370000e-29 141
14 TraesCS5D01G446500 chr3B 88.814 447 18 9 2869 3301 815875148 815874720 1.500000e-143 520
15 TraesCS5D01G446500 chr3B 92.113 355 20 3 3302 3652 815874401 815874051 9.110000e-136 494
16 TraesCS5D01G446500 chr3B 96.341 82 3 0 2790 2871 815875546 815875465 6.360000e-28 135
17 TraesCS5D01G446500 chr6D 86.596 470 40 5 2791 3237 429398236 429397767 7.040000e-137 497


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G446500 chr5D 496907610 496911262 3652 True 6746 6746 100.000000 1 3653 1 chr5D.!!$R1 3652
1 TraesCS5D01G446500 chr5B 615695251 615698022 2771 True 2076 3437 93.328500 1 2792 2 chr5B.!!$R1 2791
2 TraesCS5D01G446500 chr5A 620994019 620996811 2792 True 2054 3334 94.229000 4 2792 2 chr5A.!!$R1 2788
3 TraesCS5D01G446500 chr2B 182008351 182009893 1542 False 1535 1535 85.023000 1183 2693 1 chr2B.!!$F1 1510
4 TraesCS5D01G446500 chr2A 135198446 135199792 1346 True 1267 1267 84.114000 1464 2790 1 chr2A.!!$R1 1326
5 TraesCS5D01G446500 chr2D 128401333 128402145 812 True 843 843 85.459000 1869 2700 1 chr2D.!!$R1 831
6 TraesCS5D01G446500 chr3D 606297671 606298468 797 False 514 551 92.304500 2790 3649 2 chr3D.!!$F1 859
7 TraesCS5D01G446500 chr3A 737971079 737972401 1322 True 362 523 91.792333 2790 3652 3 chr3A.!!$R1 862
8 TraesCS5D01G446500 chr3B 815874051 815875546 1495 True 383 520 92.422667 2790 3652 3 chr3B.!!$R1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 635 0.253630 TTATTCAGGTGGGAGGGCCT 60.254 55.0 5.25 5.25 35.04 5.19 F
1503 1568 0.248784 CTGATGAGCGCGTGATCTCA 60.249 55.0 16.01 14.99 42.72 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 1983 0.251653 ACCTCAGAGCCGTCAGGTAA 60.252 55.0 0.0 0.0 37.5 2.85 R
2742 2843 0.538977 AGCAGCACTCACAAGGCAAT 60.539 50.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.543590 ACAATCTACAAGAGGTCAGTGG 57.456 45.455 0.00 0.00 0.00 4.00
34 35 2.485814 GAGGTCAGTGGAGAAAACATGC 59.514 50.000 0.00 0.00 0.00 4.06
56 57 3.763897 CCCAAAATACTCCAAGGTTCCAG 59.236 47.826 0.00 0.00 0.00 3.86
68 69 1.202818 AGGTTCCAGCTTCCAACAGAC 60.203 52.381 0.00 0.00 0.00 3.51
146 147 6.026834 TGACGGGATTATTATCTGGGGAATA 58.973 40.000 0.00 0.00 0.00 1.75
190 191 4.632327 TGGGCATTGGATCATATAACGA 57.368 40.909 0.00 0.00 0.00 3.85
260 261 2.039480 AGCCTGATGAGAAGCAACAGAA 59.961 45.455 0.00 0.00 46.88 3.02
269 270 2.507471 AGAAGCAACAGAAGATAGGGGG 59.493 50.000 0.00 0.00 0.00 5.40
285 286 0.768221 GGGGCTCACCATATCTCCCA 60.768 60.000 0.00 0.00 42.91 4.37
289 290 0.319728 CTCACCATATCTCCCAGCGG 59.680 60.000 0.00 0.00 0.00 5.52
291 292 2.047844 CCATATCTCCCAGCGGCG 60.048 66.667 0.51 0.51 0.00 6.46
292 293 2.574018 CCATATCTCCCAGCGGCGA 61.574 63.158 12.98 0.00 0.00 5.54
293 294 1.080230 CATATCTCCCAGCGGCGAG 60.080 63.158 12.98 0.93 0.00 5.03
349 350 3.866582 CTAGGGCAGGGCGAAGGG 61.867 72.222 0.00 0.00 0.00 3.95
514 515 2.147150 GCAAGGTGACAGTTCCTTCTC 58.853 52.381 7.70 1.77 41.44 2.87
517 518 4.061596 CAAGGTGACAGTTCCTTCTCTTC 58.938 47.826 7.70 0.00 41.44 2.87
519 520 3.970640 AGGTGACAGTTCCTTCTCTTCTT 59.029 43.478 0.00 0.00 0.00 2.52
522 523 5.590663 GGTGACAGTTCCTTCTCTTCTTTTT 59.409 40.000 0.00 0.00 0.00 1.94
551 575 0.542938 AGGGCTTTTCTTTCTGGGGC 60.543 55.000 0.00 0.00 0.00 5.80
561 585 2.158534 TCTTTCTGGGGCAGTGCTTAAA 60.159 45.455 16.11 7.69 32.61 1.52
563 587 2.603075 TCTGGGGCAGTGCTTAAATT 57.397 45.000 16.11 0.00 32.61 1.82
566 590 3.645687 TCTGGGGCAGTGCTTAAATTTTT 59.354 39.130 16.11 0.00 32.61 1.94
599 626 9.209175 GGATACTAGTGCTTATTTATTCAGGTG 57.791 37.037 5.39 0.00 0.00 4.00
600 627 9.209175 GATACTAGTGCTTATTTATTCAGGTGG 57.791 37.037 5.39 0.00 0.00 4.61
601 628 6.357367 ACTAGTGCTTATTTATTCAGGTGGG 58.643 40.000 0.00 0.00 0.00 4.61
602 629 5.450818 AGTGCTTATTTATTCAGGTGGGA 57.549 39.130 0.00 0.00 0.00 4.37
603 630 5.440610 AGTGCTTATTTATTCAGGTGGGAG 58.559 41.667 0.00 0.00 0.00 4.30
604 631 4.580580 GTGCTTATTTATTCAGGTGGGAGG 59.419 45.833 0.00 0.00 0.00 4.30
605 632 4.145052 GCTTATTTATTCAGGTGGGAGGG 58.855 47.826 0.00 0.00 0.00 4.30
606 633 2.755952 ATTTATTCAGGTGGGAGGGC 57.244 50.000 0.00 0.00 0.00 5.19
607 634 0.629058 TTTATTCAGGTGGGAGGGCC 59.371 55.000 0.00 0.00 0.00 5.80
608 635 0.253630 TTATTCAGGTGGGAGGGCCT 60.254 55.000 5.25 5.25 35.04 5.19
609 636 0.694444 TATTCAGGTGGGAGGGCCTC 60.694 60.000 25.80 25.80 31.73 4.70
610 637 2.788230 ATTCAGGTGGGAGGGCCTCA 62.788 60.000 33.27 13.58 31.73 3.86
611 638 3.406200 CAGGTGGGAGGGCCTCAG 61.406 72.222 33.27 12.51 31.73 3.35
612 639 4.748798 AGGTGGGAGGGCCTCAGG 62.749 72.222 33.27 0.00 31.08 3.86
614 641 4.741239 GTGGGAGGGCCTCAGGGA 62.741 72.222 33.27 12.00 31.08 4.20
615 642 4.741239 TGGGAGGGCCTCAGGGAC 62.741 72.222 33.27 16.30 40.80 4.46
616 643 4.423209 GGGAGGGCCTCAGGGACT 62.423 72.222 33.27 0.00 41.42 3.85
978 1022 1.876714 CGTCTAATCCGCCGGTGTG 60.877 63.158 15.14 5.68 0.00 3.82
1017 1061 1.988063 CCATGACGAGCCTGATATCG 58.012 55.000 0.00 0.00 44.36 2.92
1085 1129 0.467384 AGCGATGAAGAGACCATGGG 59.533 55.000 18.09 0.00 0.00 4.00
1086 1130 1.162800 GCGATGAAGAGACCATGGGC 61.163 60.000 18.09 14.76 0.00 5.36
1149 1193 1.745264 GGAGGATCGCAGGAAGGAG 59.255 63.158 0.00 0.00 34.37 3.69
1503 1568 0.248784 CTGATGAGCGCGTGATCTCA 60.249 55.000 16.01 14.99 42.72 3.27
1602 1676 2.818132 CCTCCTCTCCGTGATGGC 59.182 66.667 0.00 0.00 37.80 4.40
1632 1706 2.104170 GAGGAAGAAGGTGGAGTCGAT 58.896 52.381 0.00 0.00 0.00 3.59
1770 1845 5.412594 TCCTATCAATTCAGTGCAGTTTCAC 59.587 40.000 0.00 0.00 37.24 3.18
1900 1983 2.301009 CCAATTCAGAAGGCAGCCTTTT 59.699 45.455 28.05 19.98 44.82 2.27
1908 1991 1.911057 AGGCAGCCTTTTTACCTGAC 58.089 50.000 8.70 0.00 34.81 3.51
2337 2431 2.124983 AGCAGCGGCATCGTGAAT 60.125 55.556 12.44 0.00 44.61 2.57
2574 2668 2.853542 TGCCTGGACTTCAGCCCA 60.854 61.111 0.00 0.00 42.05 5.36
2592 2686 4.821589 GGCAGCGGGTTCCTCTCG 62.822 72.222 0.00 0.00 43.80 4.04
2646 2740 3.276857 CAAGCTGCACCACTATCAGAAT 58.723 45.455 1.02 0.00 0.00 2.40
2693 2794 8.034804 AGTTTTGACACTGTATTTTTCTGCTTT 58.965 29.630 0.00 0.00 0.00 3.51
2732 2833 9.297586 GTGATGTTATCTGTAACGTGATTCTTA 57.702 33.333 0.00 0.00 42.50 2.10
2733 2834 9.863845 TGATGTTATCTGTAACGTGATTCTTAA 57.136 29.630 0.00 0.00 42.50 1.85
2736 2837 8.928733 TGTTATCTGTAACGTGATTCTTAAACC 58.071 33.333 0.00 0.00 42.50 3.27
2738 2839 6.105397 TCTGTAACGTGATTCTTAAACCCT 57.895 37.500 0.00 0.00 0.00 4.34
2740 2841 6.014840 TCTGTAACGTGATTCTTAAACCCTCT 60.015 38.462 0.00 0.00 0.00 3.69
2742 2843 7.669427 TGTAACGTGATTCTTAAACCCTCTTA 58.331 34.615 0.00 0.00 0.00 2.10
2760 2864 1.167851 TATTGCCTTGTGAGTGCTGC 58.832 50.000 0.00 0.00 0.00 5.25
2801 2905 2.360165 CTCAATGCAATAACTCAGGGGC 59.640 50.000 0.00 0.00 0.00 5.80
2978 3401 0.657840 GGCTAACACATGCTTAGCGG 59.342 55.000 21.13 0.00 44.83 5.52
2989 3412 3.232213 TGCTTAGCGGTAGAAAGAGTG 57.768 47.619 0.00 0.00 0.00 3.51
3095 3518 8.362639 TGGTTTTCTAAAGAGTTCGTACTATGT 58.637 33.333 0.00 0.00 33.84 2.29
3191 3626 4.065789 ACTAAGTTTCAGTGCCTTGCTAC 58.934 43.478 0.00 0.00 0.00 3.58
3229 3664 3.252284 AGTGGCTGGGTGAGGTGG 61.252 66.667 0.00 0.00 0.00 4.61
3280 3715 0.604578 CTTGCCCAGGTTGAACCATG 59.395 55.000 17.83 11.39 41.95 3.66
3281 3716 1.470996 TTGCCCAGGTTGAACCATGC 61.471 55.000 17.83 15.34 41.95 4.06
3349 4105 5.864418 TGTAGACTGACCTTAACTGTGTT 57.136 39.130 0.00 0.00 0.00 3.32
3350 4106 5.597806 TGTAGACTGACCTTAACTGTGTTG 58.402 41.667 0.00 0.00 0.00 3.33
3351 4107 4.073293 AGACTGACCTTAACTGTGTTGG 57.927 45.455 0.00 0.00 0.00 3.77
3352 4108 3.139077 GACTGACCTTAACTGTGTTGGG 58.861 50.000 0.00 0.00 0.00 4.12
3355 4111 2.240160 TGACCTTAACTGTGTTGGGTGT 59.760 45.455 12.06 0.00 0.00 4.16
3364 4120 1.003696 TGTGTTGGGTGTGTCAGTTCA 59.996 47.619 0.00 0.00 0.00 3.18
3402 4158 8.902540 ATATCTCAGTCTTGTGTAAAACAACA 57.097 30.769 0.00 0.00 44.97 3.33
3447 4203 4.822036 TCGTTGTCCTTGGTAAACAATG 57.178 40.909 0.00 0.00 39.92 2.82
3460 4216 4.326009 GGTAAACAATGCAAGCAAATACGG 59.674 41.667 0.00 0.00 0.00 4.02
3478 4234 4.803098 ACGGTAGCTAAACTTCACTGAT 57.197 40.909 0.00 0.00 0.00 2.90
3546 4303 3.814005 TTTCCAGTAGGCGGTATTCTC 57.186 47.619 0.00 0.00 33.74 2.87
3547 4304 1.700955 TCCAGTAGGCGGTATTCTCC 58.299 55.000 0.00 0.00 33.74 3.71
3569 4326 4.505039 CCAAGGGAAATAGCGTATAAGCCT 60.505 45.833 7.05 0.00 38.01 4.58
3570 4327 4.976540 AGGGAAATAGCGTATAAGCCTT 57.023 40.909 7.05 0.00 38.01 4.35
3625 4386 2.665649 TATGGAGGTACTTGCACGTG 57.334 50.000 12.28 12.28 41.55 4.49
3649 4410 7.432252 GTGTTTTCTTTGACTTATGTGTTCTGG 59.568 37.037 0.00 0.00 0.00 3.86
3652 4413 6.109156 TCTTTGACTTATGTGTTCTGGCTA 57.891 37.500 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.047377 TGGAGTATTTTGGGCATGTTTTCTC 60.047 40.000 0.00 0.00 0.00 2.87
34 35 3.763897 CTGGAACCTTGGAGTATTTTGGG 59.236 47.826 0.00 0.00 0.00 4.12
56 57 2.796593 GTGCAAATTGTCTGTTGGAAGC 59.203 45.455 0.00 0.00 0.00 3.86
68 69 6.266203 TGTTTCGTTGTTATGTGCAAATTG 57.734 33.333 0.00 0.00 0.00 2.32
146 147 4.639334 AGTGCTAGATCGCATTTCATCAT 58.361 39.130 0.00 0.00 42.62 2.45
242 243 5.754406 CCTATCTTCTGTTGCTTCTCATCAG 59.246 44.000 0.00 0.00 41.60 2.90
248 249 2.507471 CCCCCTATCTTCTGTTGCTTCT 59.493 50.000 0.00 0.00 0.00 2.85
260 261 2.388563 AGATATGGTGAGCCCCCTATCT 59.611 50.000 6.64 6.64 31.11 1.98
269 270 0.320247 CGCTGGGAGATATGGTGAGC 60.320 60.000 0.00 0.00 0.00 4.26
367 368 2.943653 GAACCTTCACCGGCGTTG 59.056 61.111 6.01 0.62 0.00 4.10
519 520 2.999185 AAGCCCTGATCCCAGAAAAA 57.001 45.000 0.00 0.00 43.02 1.94
522 523 1.995542 AGAAAAGCCCTGATCCCAGAA 59.004 47.619 0.00 0.00 43.02 3.02
523 524 1.673767 AGAAAAGCCCTGATCCCAGA 58.326 50.000 0.00 0.00 43.02 3.86
526 527 2.757314 CAGAAAGAAAAGCCCTGATCCC 59.243 50.000 0.00 0.00 0.00 3.85
527 528 2.757314 CCAGAAAGAAAAGCCCTGATCC 59.243 50.000 0.00 0.00 0.00 3.36
528 529 2.757314 CCCAGAAAGAAAAGCCCTGATC 59.243 50.000 0.00 0.00 0.00 2.92
583 610 4.145052 CCCTCCCACCTGAATAAATAAGC 58.855 47.826 0.00 0.00 0.00 3.09
584 611 4.145052 GCCCTCCCACCTGAATAAATAAG 58.855 47.826 0.00 0.00 0.00 1.73
587 614 1.217942 GGCCCTCCCACCTGAATAAAT 59.782 52.381 0.00 0.00 0.00 1.40
590 617 0.694444 GAGGCCCTCCCACCTGAATA 60.694 60.000 0.00 0.00 36.05 1.75
591 618 2.003548 GAGGCCCTCCCACCTGAAT 61.004 63.158 0.00 0.00 36.05 2.57
592 619 2.610859 GAGGCCCTCCCACCTGAA 60.611 66.667 0.00 0.00 36.05 3.02
593 620 3.931631 CTGAGGCCCTCCCACCTGA 62.932 68.421 8.62 0.00 36.05 3.86
594 621 3.406200 CTGAGGCCCTCCCACCTG 61.406 72.222 8.62 0.00 36.05 4.00
595 622 4.748798 CCTGAGGCCCTCCCACCT 62.749 72.222 8.62 0.00 39.65 4.00
597 624 4.741239 TCCCTGAGGCCCTCCCAC 62.741 72.222 8.62 0.00 35.39 4.61
598 625 4.741239 GTCCCTGAGGCCCTCCCA 62.741 72.222 8.62 0.00 35.39 4.37
599 626 4.423209 AGTCCCTGAGGCCCTCCC 62.423 72.222 8.62 0.00 0.00 4.30
600 627 2.766229 GAGTCCCTGAGGCCCTCC 60.766 72.222 8.62 0.00 0.00 4.30
601 628 2.766229 GGAGTCCCTGAGGCCCTC 60.766 72.222 2.98 2.98 32.76 4.30
602 629 4.423209 GGGAGTCCCTGAGGCCCT 62.423 72.222 22.04 0.00 41.34 5.19
695 723 5.087323 TGGAGAGATTTTAGGGCTATCGAT 58.913 41.667 2.16 2.16 0.00 3.59
775 803 2.750237 GCCGTGGTGATTGGGGAC 60.750 66.667 0.00 0.00 0.00 4.46
828 862 0.455005 CGTACCTCGGAAGGAAGACC 59.545 60.000 0.00 0.00 46.67 3.85
834 868 3.516558 CGAGCTTCGTACCTCGGAAGG 62.517 61.905 10.36 0.00 45.20 3.46
1149 1193 0.176910 CCTTCTTCTTCCTCCTCCGC 59.823 60.000 0.00 0.00 0.00 5.54
1224 1268 1.732259 GTGTAGATGTTGCCGAACAGG 59.268 52.381 0.00 0.00 45.29 4.00
1298 1342 2.783135 TGAAGAACAAGGGAGCATCAC 58.217 47.619 0.00 0.00 40.51 3.06
1503 1568 2.324541 CTAGCCTCATACTCCTTGCCT 58.675 52.381 0.00 0.00 0.00 4.75
1585 1650 2.818132 GCCATCACGGAGAGGAGG 59.182 66.667 0.00 0.00 36.56 4.30
1602 1676 1.066303 CCTTCTTCCTCATCGGAGTCG 59.934 57.143 0.00 0.00 44.28 4.18
1632 1706 5.353111 TCATCGTTGTTCCGAAGCATATTA 58.647 37.500 0.00 0.00 40.73 0.98
1770 1845 1.022735 GCATCAGCTGACCATTCCTG 58.977 55.000 20.97 12.72 37.91 3.86
1900 1983 0.251653 ACCTCAGAGCCGTCAGGTAA 60.252 55.000 0.00 0.00 37.50 2.85
2337 2431 1.991121 ACTCGTCCCTCTTGTACACA 58.009 50.000 0.00 0.00 0.00 3.72
2574 2668 3.394836 GAGAGGAACCCGCTGCCT 61.395 66.667 0.00 0.00 32.83 4.75
2693 2794 6.875726 CAGATAACATCACAGGTTTTCTCTGA 59.124 38.462 0.00 0.00 35.35 3.27
2705 2806 7.320399 AGAATCACGTTACAGATAACATCACA 58.680 34.615 0.00 0.00 40.77 3.58
2732 2833 4.082125 CTCACAAGGCAATAAGAGGGTTT 58.918 43.478 0.00 0.00 0.00 3.27
2733 2834 3.074538 ACTCACAAGGCAATAAGAGGGTT 59.925 43.478 0.00 0.00 0.00 4.11
2734 2835 2.644798 ACTCACAAGGCAATAAGAGGGT 59.355 45.455 0.00 0.00 0.00 4.34
2735 2836 3.012518 CACTCACAAGGCAATAAGAGGG 58.987 50.000 0.00 0.00 0.00 4.30
2736 2837 2.421424 GCACTCACAAGGCAATAAGAGG 59.579 50.000 0.00 0.00 0.00 3.69
2738 2839 3.076621 CAGCACTCACAAGGCAATAAGA 58.923 45.455 0.00 0.00 0.00 2.10
2740 2841 1.541147 GCAGCACTCACAAGGCAATAA 59.459 47.619 0.00 0.00 0.00 1.40
2742 2843 0.538977 AGCAGCACTCACAAGGCAAT 60.539 50.000 0.00 0.00 0.00 3.56
2760 2864 9.447040 CATTGAGCATTAAAATATCTGTGACAG 57.553 33.333 6.18 6.18 0.00 3.51
2910 3333 3.492383 CACACATAAGGCTGCTATCGAAG 59.508 47.826 0.00 0.00 0.00 3.79
3062 3485 8.148999 ACGAACTCTTTAGAAAACCATAACTCT 58.851 33.333 0.00 0.00 0.00 3.24
3074 3497 7.246311 CGGAACATAGTACGAACTCTTTAGAA 58.754 38.462 0.00 0.00 37.15 2.10
3076 3499 5.970023 CCGGAACATAGTACGAACTCTTTAG 59.030 44.000 0.00 0.00 37.15 1.85
3095 3518 2.503765 TGACTTGATCCATAAGCCGGAA 59.496 45.455 5.05 0.00 35.77 4.30
3148 3571 9.480053 CTTAGTTGAATGATTGGTTGACAAAAT 57.520 29.630 0.00 0.00 43.46 1.82
3191 3626 2.830370 GGGCCAAATCCCTGCTCG 60.830 66.667 4.39 0.00 43.13 5.03
3229 3664 2.359531 CCGAGACAGAGAATAGGACACC 59.640 54.545 0.00 0.00 0.00 4.16
3280 3715 4.130118 AGCTAATGTAAGTGCATACTGGC 58.870 43.478 0.00 0.00 37.19 4.85
3281 3716 7.519008 GCTTTAGCTAATGTAAGTGCATACTGG 60.519 40.741 17.79 0.00 36.16 4.00
3349 4105 2.305635 AGCATATGAACTGACACACCCA 59.694 45.455 6.97 0.00 0.00 4.51
3350 4106 2.679837 CAGCATATGAACTGACACACCC 59.320 50.000 6.97 0.00 35.90 4.61
3351 4107 3.599343 TCAGCATATGAACTGACACACC 58.401 45.455 6.97 0.00 37.99 4.16
3385 4141 7.544217 ACCTTTGAATGTTGTTTTACACAAGAC 59.456 33.333 0.00 0.00 46.49 3.01
3398 4154 2.548493 CCCCAGCAACCTTTGAATGTTG 60.548 50.000 7.30 7.30 43.62 3.33
3402 4158 2.365410 GCCCCAGCAACCTTTGAAT 58.635 52.632 0.00 0.00 39.53 2.57
3428 4184 4.314740 TGCATTGTTTACCAAGGACAAC 57.685 40.909 0.00 0.00 36.99 3.32
3447 4203 4.094442 AGTTTAGCTACCGTATTTGCTTGC 59.906 41.667 0.00 0.00 37.02 4.01
3546 4303 3.751698 GGCTTATACGCTATTTCCCTTGG 59.248 47.826 0.82 0.00 0.00 3.61
3547 4304 4.642429 AGGCTTATACGCTATTTCCCTTG 58.358 43.478 0.82 0.00 0.00 3.61
3625 4386 6.417930 GCCAGAACACATAAGTCAAAGAAAAC 59.582 38.462 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.