Multiple sequence alignment - TraesCS5D01G445800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G445800 chr5D 100.000 3352 0 0 1 3352 496075203 496078554 0.000000e+00 6191.0
1 TraesCS5D01G445800 chr5D 83.997 1556 185 33 735 2248 496281087 496282620 0.000000e+00 1435.0
2 TraesCS5D01G445800 chr5D 90.272 1028 73 14 468 1492 496134890 496135893 0.000000e+00 1319.0
3 TraesCS5D01G445800 chr5D 86.710 775 70 16 468 1222 495906324 495907085 0.000000e+00 830.0
4 TraesCS5D01G445800 chr5D 81.851 843 103 24 1466 2290 496135894 496136704 0.000000e+00 664.0
5 TraesCS5D01G445800 chr5D 93.807 436 25 2 1 435 1626999 1627433 0.000000e+00 654.0
6 TraesCS5D01G445800 chr5D 78.078 926 147 27 1534 2418 496155131 496156041 4.920000e-148 534.0
7 TraesCS5D01G445800 chr5D 87.152 467 54 5 1517 1982 495907361 495907822 2.960000e-145 525.0
8 TraesCS5D01G445800 chr5D 80.639 563 75 16 2298 2841 496282643 496283190 4.030000e-109 405.0
9 TraesCS5D01G445800 chr5D 84.647 241 34 3 468 707 496280852 496281090 1.550000e-58 237.0
10 TraesCS5D01G445800 chr5D 81.034 290 46 9 3065 3351 17479226 17478943 4.350000e-54 222.0
11 TraesCS5D01G445800 chr5A 94.895 2331 106 8 534 2856 619852062 619854387 0.000000e+00 3633.0
12 TraesCS5D01G445800 chr5A 83.831 1540 187 32 746 2248 620166911 620168425 0.000000e+00 1408.0
13 TraesCS5D01G445800 chr5A 89.007 1037 79 17 468 1491 619957723 619958737 0.000000e+00 1251.0
14 TraesCS5D01G445800 chr5A 78.746 2122 267 84 634 2681 619963478 619965489 0.000000e+00 1251.0
15 TraesCS5D01G445800 chr5A 81.215 1070 142 37 468 1533 620166664 620167678 0.000000e+00 808.0
16 TraesCS5D01G445800 chr5A 77.424 1289 218 39 1518 2756 619969514 619970779 0.000000e+00 701.0
17 TraesCS5D01G445800 chr5A 82.143 84 12 3 2765 2847 619974740 619974821 6.000000e-08 69.4
18 TraesCS5D01G445800 chr5A 82.143 84 12 3 2765 2847 620002895 620002976 6.000000e-08 69.4
19 TraesCS5D01G445800 chr5A 97.222 36 1 0 2936 2971 619854465 619854500 1.000000e-05 62.1
20 TraesCS5D01G445800 chr5B 96.592 1790 55 4 1133 2918 613283510 613285297 0.000000e+00 2963.0
21 TraesCS5D01G445800 chr5B 89.450 1782 139 19 560 2328 613642512 613644257 0.000000e+00 2204.0
22 TraesCS5D01G445800 chr5B 92.281 881 67 1 469 1348 613631233 613632113 0.000000e+00 1249.0
23 TraesCS5D01G445800 chr5B 95.434 679 20 5 468 1137 613281103 613281779 0.000000e+00 1072.0
24 TraesCS5D01G445800 chr5B 77.918 1422 202 63 1387 2749 613648757 613650125 0.000000e+00 784.0
25 TraesCS5D01G445800 chr5B 86.536 661 68 11 577 1220 613647917 613648573 0.000000e+00 708.0
26 TraesCS5D01G445800 chr5B 80.566 530 75 12 2246 2756 614341387 614341907 1.890000e-102 383.0
27 TraesCS5D01G445800 chr5B 88.591 149 8 5 468 611 614051700 614051844 4.450000e-39 172.0
28 TraesCS5D01G445800 chr5B 92.500 40 3 0 2767 2806 614341959 614341998 1.300000e-04 58.4
29 TraesCS5D01G445800 chrUn 84.000 1900 236 36 889 2756 338058024 338056161 0.000000e+00 1762.0
30 TraesCS5D01G445800 chrUn 94.595 37 2 0 2770 2806 338056105 338056069 1.300000e-04 58.4
31 TraesCS5D01G445800 chr7D 93.631 471 27 3 1 470 186400900 186401368 0.000000e+00 701.0
32 TraesCS5D01G445800 chr7D 94.954 436 21 1 1 435 281327147 281327582 0.000000e+00 682.0
33 TraesCS5D01G445800 chr7D 79.672 305 48 13 3046 3345 41696436 41696731 1.220000e-49 207.0
34 TraesCS5D01G445800 chr7D 80.068 296 37 20 105 386 521575644 521575931 2.040000e-47 200.0
35 TraesCS5D01G445800 chr7D 81.092 238 41 4 151 386 521573166 521573401 1.590000e-43 187.0
36 TraesCS5D01G445800 chr7D 79.583 240 38 10 152 386 616772018 616771785 9.620000e-36 161.0
37 TraesCS5D01G445800 chr7D 88.785 107 5 6 283 386 538328585 538328687 1.260000e-24 124.0
38 TraesCS5D01G445800 chr7D 88.785 107 5 6 283 386 616770466 616770364 1.260000e-24 124.0
39 TraesCS5D01G445800 chr3D 95.642 436 18 1 36 470 456572041 456572476 0.000000e+00 699.0
40 TraesCS5D01G445800 chr3D 95.413 436 19 1 1 435 67014740 67014305 0.000000e+00 693.0
41 TraesCS5D01G445800 chr3D 94.420 448 22 2 25 471 459157548 459157993 0.000000e+00 686.0
42 TraesCS5D01G445800 chr3D 82.879 257 37 5 3047 3302 583305238 583305488 1.210000e-54 224.0
43 TraesCS5D01G445800 chr3D 83.158 190 26 4 1424 1612 508252744 508252560 5.750000e-38 169.0
44 TraesCS5D01G445800 chr4D 95.183 436 20 1 1 435 477361119 477361554 0.000000e+00 688.0
45 TraesCS5D01G445800 chr4D 93.119 436 29 1 1 435 177098455 177098890 3.650000e-179 638.0
46 TraesCS5D01G445800 chr1D 92.661 436 29 2 1 435 38660134 38659701 2.840000e-175 625.0
47 TraesCS5D01G445800 chr1D 81.073 317 44 14 3045 3351 41491649 41491339 4.320000e-59 239.0
48 TraesCS5D01G445800 chr2A 81.470 313 48 8 3038 3345 7842447 7842140 7.180000e-62 248.0
49 TraesCS5D01G445800 chr2A 82.955 264 35 9 3046 3305 25129926 25129669 2.600000e-56 230.0
50 TraesCS5D01G445800 chr6B 79.938 324 52 12 3036 3350 123839089 123839408 3.370000e-55 226.0
51 TraesCS5D01G445800 chr6A 79.205 327 51 14 3036 3351 67532845 67533165 9.420000e-51 211.0
52 TraesCS5D01G445800 chr6D 79.355 310 49 12 3037 3339 460390110 460389809 1.580000e-48 204.0
53 TraesCS5D01G445800 chr2B 84.127 189 27 2 1424 1612 453622477 453622292 2.660000e-41 180.0
54 TraesCS5D01G445800 chr4B 83.333 192 23 7 1424 1612 511708901 511708716 5.750000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G445800 chr5D 496075203 496078554 3351 False 6191.000000 6191 100.000000 1 3352 1 chr5D.!!$F2 3351
1 TraesCS5D01G445800 chr5D 496134890 496136704 1814 False 991.500000 1319 86.061500 468 2290 2 chr5D.!!$F5 1822
2 TraesCS5D01G445800 chr5D 496280852 496283190 2338 False 692.333333 1435 83.094333 468 2841 3 chr5D.!!$F6 2373
3 TraesCS5D01G445800 chr5D 495906324 495907822 1498 False 677.500000 830 86.931000 468 1982 2 chr5D.!!$F4 1514
4 TraesCS5D01G445800 chr5D 496155131 496156041 910 False 534.000000 534 78.078000 1534 2418 1 chr5D.!!$F3 884
5 TraesCS5D01G445800 chr5A 619852062 619854500 2438 False 1847.550000 3633 96.058500 534 2971 2 chr5A.!!$F4 2437
6 TraesCS5D01G445800 chr5A 619957723 619958737 1014 False 1251.000000 1251 89.007000 468 1491 1 chr5A.!!$F1 1023
7 TraesCS5D01G445800 chr5A 619963478 619965489 2011 False 1251.000000 1251 78.746000 634 2681 1 chr5A.!!$F2 2047
8 TraesCS5D01G445800 chr5A 620166664 620168425 1761 False 1108.000000 1408 82.523000 468 2248 2 chr5A.!!$F6 1780
9 TraesCS5D01G445800 chr5A 619969514 619974821 5307 False 385.200000 701 79.783500 1518 2847 2 chr5A.!!$F5 1329
10 TraesCS5D01G445800 chr5B 613281103 613285297 4194 False 2017.500000 2963 96.013000 468 2918 2 chr5B.!!$F3 2450
11 TraesCS5D01G445800 chr5B 613631233 613632113 880 False 1249.000000 1249 92.281000 469 1348 1 chr5B.!!$F1 879
12 TraesCS5D01G445800 chr5B 613642512 613650125 7613 False 1232.000000 2204 84.634667 560 2749 3 chr5B.!!$F4 2189
13 TraesCS5D01G445800 chr5B 614341387 614341998 611 False 220.700000 383 86.533000 2246 2806 2 chr5B.!!$F5 560
14 TraesCS5D01G445800 chrUn 338056069 338058024 1955 True 910.200000 1762 89.297500 889 2806 2 chrUn.!!$R1 1917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.106116 CTAGGGTTCCTACCGGCTCT 60.106 60.000 0.00 0.0 46.04 4.09 F
458 459 0.107165 CCCTGTGGGCCTAGCTAAAC 60.107 60.000 4.53 0.0 35.35 2.01 F
466 467 0.395312 GCCTAGCTAAACCGGCCATA 59.605 55.000 10.00 0.0 36.56 2.74 F
2250 9606 2.066393 TTCCGGAGAGGGGCTCATG 61.066 63.158 3.34 0.0 45.81 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 3284 3.056393 CACTTCACGTACCCCACATTCTA 60.056 47.826 0.00 0.00 0.00 2.10 R
2273 9629 0.319555 TGCGAAGGAACCTTGAGTCG 60.320 55.000 11.02 9.23 36.26 4.18 R
2293 9650 7.672983 TCTTCCATAGCTTCAGTTTTAGTTG 57.327 36.000 0.00 0.00 0.00 3.16 R
3093 14494 0.107017 CGGTCATGGCCTTTGGAGAT 60.107 55.000 15.80 0.00 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.545481 GTCGTCATCAGCGCGGTG 61.545 66.667 31.22 31.22 0.00 4.94
51 52 3.743636 TCGTCATCAGCGCGGTGA 61.744 61.111 39.01 39.01 0.00 4.02
52 53 3.250323 CGTCATCAGCGCGGTGAG 61.250 66.667 39.08 30.24 0.00 3.51
53 54 2.887568 GTCATCAGCGCGGTGAGG 60.888 66.667 38.16 38.16 0.00 3.86
54 55 4.147449 TCATCAGCGCGGTGAGGG 62.147 66.667 40.72 33.68 0.00 4.30
79 80 4.175489 CGTCGTCATCGGAGCGGT 62.175 66.667 0.00 0.00 37.69 5.68
80 81 2.579787 GTCGTCATCGGAGCGGTG 60.580 66.667 0.00 0.00 39.56 4.94
81 82 3.822192 TCGTCATCGGAGCGGTGG 61.822 66.667 0.00 0.00 38.63 4.61
82 83 3.822192 CGTCATCGGAGCGGTGGA 61.822 66.667 0.00 0.00 38.63 4.02
83 84 2.105128 GTCATCGGAGCGGTGGAG 59.895 66.667 0.00 0.00 38.63 3.86
84 85 3.838271 TCATCGGAGCGGTGGAGC 61.838 66.667 0.00 0.00 38.63 4.70
85 86 4.899239 CATCGGAGCGGTGGAGCC 62.899 72.222 0.00 0.00 34.00 4.70
94 95 4.767255 GGTGGAGCCGCTGGACAG 62.767 72.222 0.00 0.00 0.00 3.51
104 105 4.498520 CTGGACAGCGTCGGCGAT 62.499 66.667 16.53 2.35 46.35 4.58
118 119 4.758251 CGATGGTGGTGGCTGCGA 62.758 66.667 0.00 0.00 0.00 5.10
119 120 3.127533 GATGGTGGTGGCTGCGAC 61.128 66.667 6.21 6.21 0.00 5.19
120 121 3.899981 GATGGTGGTGGCTGCGACA 62.900 63.158 16.54 1.35 0.00 4.35
121 122 3.272364 ATGGTGGTGGCTGCGACAT 62.272 57.895 16.54 0.00 0.00 3.06
122 123 3.434319 GGTGGTGGCTGCGACATG 61.434 66.667 16.54 0.00 0.00 3.21
123 124 2.358615 GTGGTGGCTGCGACATGA 60.359 61.111 16.54 0.00 0.00 3.07
124 125 1.746615 GTGGTGGCTGCGACATGAT 60.747 57.895 16.54 0.00 0.00 2.45
125 126 1.450134 TGGTGGCTGCGACATGATC 60.450 57.895 16.54 0.00 0.00 2.92
126 127 1.153289 GGTGGCTGCGACATGATCT 60.153 57.895 16.54 0.00 0.00 2.75
127 128 1.434622 GGTGGCTGCGACATGATCTG 61.435 60.000 16.54 0.00 0.00 2.90
128 129 0.460811 GTGGCTGCGACATGATCTGA 60.461 55.000 10.03 0.00 0.00 3.27
129 130 0.249955 TGGCTGCGACATGATCTGAA 59.750 50.000 0.00 0.00 0.00 3.02
130 131 0.654683 GGCTGCGACATGATCTGAAC 59.345 55.000 0.00 0.00 0.00 3.18
131 132 1.649664 GCTGCGACATGATCTGAACT 58.350 50.000 0.00 0.00 0.00 3.01
132 133 2.005451 GCTGCGACATGATCTGAACTT 58.995 47.619 0.00 0.00 0.00 2.66
133 134 2.222976 GCTGCGACATGATCTGAACTTG 60.223 50.000 0.00 0.26 0.00 3.16
134 135 2.349590 TGCGACATGATCTGAACTTGG 58.650 47.619 0.00 0.00 0.00 3.61
135 136 2.289631 TGCGACATGATCTGAACTTGGT 60.290 45.455 0.00 0.00 0.00 3.67
136 137 2.349886 GCGACATGATCTGAACTTGGTC 59.650 50.000 0.00 0.00 0.00 4.02
137 138 3.854666 CGACATGATCTGAACTTGGTCT 58.145 45.455 0.00 0.00 0.00 3.85
138 139 3.862267 CGACATGATCTGAACTTGGTCTC 59.138 47.826 0.00 0.00 0.00 3.36
139 140 4.381398 CGACATGATCTGAACTTGGTCTCT 60.381 45.833 0.00 0.00 0.00 3.10
140 141 4.829968 ACATGATCTGAACTTGGTCTCTG 58.170 43.478 0.00 0.00 0.00 3.35
141 142 4.529769 ACATGATCTGAACTTGGTCTCTGA 59.470 41.667 0.00 0.00 0.00 3.27
142 143 5.189342 ACATGATCTGAACTTGGTCTCTGAT 59.811 40.000 0.00 0.00 34.18 2.90
143 144 5.752036 TGATCTGAACTTGGTCTCTGATT 57.248 39.130 0.00 0.00 32.34 2.57
144 145 6.857437 TGATCTGAACTTGGTCTCTGATTA 57.143 37.500 0.00 0.00 32.34 1.75
145 146 6.634805 TGATCTGAACTTGGTCTCTGATTAC 58.365 40.000 0.00 0.00 32.34 1.89
146 147 5.407407 TCTGAACTTGGTCTCTGATTACC 57.593 43.478 3.09 3.09 36.24 2.85
147 148 4.838423 TCTGAACTTGGTCTCTGATTACCA 59.162 41.667 7.68 7.68 43.99 3.25
166 167 4.586306 CCAAATTGGTAGGACTAGGGTT 57.414 45.455 3.34 0.00 31.35 4.11
167 168 4.524053 CCAAATTGGTAGGACTAGGGTTC 58.476 47.826 3.34 0.00 31.35 3.62
168 169 4.524053 CAAATTGGTAGGACTAGGGTTCC 58.476 47.826 0.00 0.00 0.00 3.62
169 170 3.797671 ATTGGTAGGACTAGGGTTCCT 57.202 47.619 5.75 5.75 37.71 3.36
170 171 4.913154 ATTGGTAGGACTAGGGTTCCTA 57.087 45.455 3.95 3.95 34.61 2.94
173 174 2.580962 GTAGGACTAGGGTTCCTACCG 58.419 57.143 20.22 0.00 46.18 4.02
174 175 0.261109 AGGACTAGGGTTCCTACCGG 59.739 60.000 0.00 0.00 46.04 5.28
175 176 1.398174 GGACTAGGGTTCCTACCGGC 61.398 65.000 0.00 0.00 46.04 6.13
176 177 0.396835 GACTAGGGTTCCTACCGGCT 60.397 60.000 0.00 0.00 46.04 5.52
177 178 0.396835 ACTAGGGTTCCTACCGGCTC 60.397 60.000 0.00 0.00 46.04 4.70
178 179 0.106116 CTAGGGTTCCTACCGGCTCT 60.106 60.000 0.00 0.00 46.04 4.09
179 180 1.144503 CTAGGGTTCCTACCGGCTCTA 59.855 57.143 0.00 0.00 46.04 2.43
180 181 0.396835 AGGGTTCCTACCGGCTCTAC 60.397 60.000 0.00 0.00 46.04 2.59
181 182 0.396835 GGGTTCCTACCGGCTCTACT 60.397 60.000 0.00 0.00 46.04 2.57
182 183 1.031235 GGTTCCTACCGGCTCTACTC 58.969 60.000 0.00 0.00 34.01 2.59
183 184 1.031235 GTTCCTACCGGCTCTACTCC 58.969 60.000 0.00 0.00 0.00 3.85
184 185 0.924823 TTCCTACCGGCTCTACTCCT 59.075 55.000 0.00 0.00 0.00 3.69
185 186 0.924823 TCCTACCGGCTCTACTCCTT 59.075 55.000 0.00 0.00 0.00 3.36
186 187 2.130193 TCCTACCGGCTCTACTCCTTA 58.870 52.381 0.00 0.00 0.00 2.69
187 188 2.106166 TCCTACCGGCTCTACTCCTTAG 59.894 54.545 0.00 0.00 0.00 2.18
188 189 2.506444 CTACCGGCTCTACTCCTTAGG 58.494 57.143 0.00 0.00 0.00 2.69
189 190 0.630134 ACCGGCTCTACTCCTTAGGT 59.370 55.000 0.00 0.00 0.00 3.08
190 191 1.006878 ACCGGCTCTACTCCTTAGGTT 59.993 52.381 0.00 0.00 0.00 3.50
191 192 2.243221 ACCGGCTCTACTCCTTAGGTTA 59.757 50.000 0.00 0.00 0.00 2.85
192 193 3.117208 ACCGGCTCTACTCCTTAGGTTAT 60.117 47.826 0.00 0.00 0.00 1.89
193 194 4.105377 ACCGGCTCTACTCCTTAGGTTATA 59.895 45.833 0.00 0.00 0.00 0.98
194 195 5.075493 CCGGCTCTACTCCTTAGGTTATAA 58.925 45.833 0.00 0.00 0.00 0.98
195 196 5.183522 CCGGCTCTACTCCTTAGGTTATAAG 59.816 48.000 0.00 0.00 0.00 1.73
196 197 5.183522 CGGCTCTACTCCTTAGGTTATAAGG 59.816 48.000 7.26 7.26 44.11 2.69
197 198 5.481122 GGCTCTACTCCTTAGGTTATAAGGG 59.519 48.000 12.52 7.07 43.21 3.95
198 199 5.047164 GCTCTACTCCTTAGGTTATAAGGGC 60.047 48.000 12.52 4.74 43.21 5.19
199 200 6.034442 TCTACTCCTTAGGTTATAAGGGCA 57.966 41.667 12.52 0.00 43.21 5.36
200 201 6.075984 TCTACTCCTTAGGTTATAAGGGCAG 58.924 44.000 12.52 7.17 43.21 4.85
201 202 4.892198 ACTCCTTAGGTTATAAGGGCAGA 58.108 43.478 12.52 0.00 43.21 4.26
202 203 5.286221 ACTCCTTAGGTTATAAGGGCAGAA 58.714 41.667 12.52 0.00 43.21 3.02
203 204 5.130643 ACTCCTTAGGTTATAAGGGCAGAAC 59.869 44.000 12.52 0.00 43.21 3.01
204 205 5.034200 TCCTTAGGTTATAAGGGCAGAACA 58.966 41.667 12.52 0.00 43.21 3.18
205 206 5.130477 TCCTTAGGTTATAAGGGCAGAACAG 59.870 44.000 12.52 0.00 43.21 3.16
206 207 3.283259 AGGTTATAAGGGCAGAACAGC 57.717 47.619 0.00 0.00 0.00 4.40
207 208 1.940613 GGTTATAAGGGCAGAACAGCG 59.059 52.381 0.00 0.00 34.64 5.18
208 209 1.940613 GTTATAAGGGCAGAACAGCGG 59.059 52.381 0.00 0.00 34.64 5.52
209 210 1.491668 TATAAGGGCAGAACAGCGGA 58.508 50.000 0.00 0.00 34.64 5.54
210 211 0.179000 ATAAGGGCAGAACAGCGGAG 59.821 55.000 0.00 0.00 34.64 4.63
211 212 1.899437 TAAGGGCAGAACAGCGGAGG 61.899 60.000 0.00 0.00 34.64 4.30
212 213 4.021925 GGGCAGAACAGCGGAGGT 62.022 66.667 0.00 0.00 41.48 3.85
213 214 2.032681 GGCAGAACAGCGGAGGTT 59.967 61.111 0.00 0.00 33.74 3.50
214 215 2.328099 GGCAGAACAGCGGAGGTTG 61.328 63.158 0.00 0.00 33.74 3.77
215 216 2.328099 GCAGAACAGCGGAGGTTGG 61.328 63.158 0.00 0.00 33.74 3.77
216 217 1.672356 CAGAACAGCGGAGGTTGGG 60.672 63.158 0.00 0.00 33.74 4.12
217 218 2.359975 GAACAGCGGAGGTTGGGG 60.360 66.667 0.00 0.00 33.74 4.96
218 219 3.920093 GAACAGCGGAGGTTGGGGG 62.920 68.421 0.00 0.00 33.74 5.40
263 264 4.856607 GCCGTCGCGAGGGAAGAG 62.857 72.222 42.80 21.81 38.58 2.85
264 265 4.194720 CCGTCGCGAGGGAAGAGG 62.195 72.222 37.75 15.62 38.58 3.69
265 266 3.132139 CGTCGCGAGGGAAGAGGA 61.132 66.667 20.58 0.00 0.00 3.71
266 267 2.802106 GTCGCGAGGGAAGAGGAG 59.198 66.667 10.24 0.00 0.00 3.69
267 268 2.440430 TCGCGAGGGAAGAGGAGG 60.440 66.667 3.71 0.00 0.00 4.30
268 269 3.532155 CGCGAGGGAAGAGGAGGG 61.532 72.222 0.00 0.00 0.00 4.30
269 270 3.855853 GCGAGGGAAGAGGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
270 271 3.532155 CGAGGGAAGAGGAGGGCG 61.532 72.222 0.00 0.00 0.00 6.13
271 272 3.157949 GAGGGAAGAGGAGGGCGG 61.158 72.222 0.00 0.00 0.00 6.13
308 309 4.222847 CGGCTAGGGTTCCGGCTC 62.223 72.222 0.00 0.00 41.82 4.70
309 310 3.862991 GGCTAGGGTTCCGGCTCC 61.863 72.222 0.00 0.53 0.00 4.70
310 311 2.764547 GCTAGGGTTCCGGCTCCT 60.765 66.667 13.24 13.24 34.85 3.69
311 312 2.798364 GCTAGGGTTCCGGCTCCTC 61.798 68.421 12.29 4.77 32.46 3.71
312 313 1.075896 CTAGGGTTCCGGCTCCTCT 60.076 63.158 12.29 10.56 32.46 3.69
313 314 1.381327 TAGGGTTCCGGCTCCTCTG 60.381 63.158 12.29 0.00 32.46 3.35
314 315 2.873557 TAGGGTTCCGGCTCCTCTGG 62.874 65.000 12.29 0.00 42.90 3.86
315 316 3.787001 GGTTCCGGCTCCTCTGGG 61.787 72.222 0.00 0.00 41.78 4.45
316 317 2.683933 GTTCCGGCTCCTCTGGGA 60.684 66.667 0.00 0.00 41.78 4.37
326 327 3.801997 CTCTGGGAGCCGGGCAAT 61.802 66.667 23.09 0.00 0.00 3.56
327 328 2.366301 TCTGGGAGCCGGGCAATA 60.366 61.111 23.09 3.43 0.00 1.90
328 329 2.111878 CTGGGAGCCGGGCAATAG 59.888 66.667 23.09 9.80 0.00 1.73
329 330 3.482232 CTGGGAGCCGGGCAATAGG 62.482 68.421 23.09 4.36 0.00 2.57
330 331 4.271016 GGGAGCCGGGCAATAGGG 62.271 72.222 23.09 0.00 0.00 3.53
331 332 3.168528 GGAGCCGGGCAATAGGGA 61.169 66.667 23.09 0.00 0.00 4.20
332 333 2.529744 GGAGCCGGGCAATAGGGAT 61.530 63.158 23.09 0.00 0.00 3.85
333 334 1.198759 GGAGCCGGGCAATAGGGATA 61.199 60.000 23.09 0.00 0.00 2.59
334 335 0.250513 GAGCCGGGCAATAGGGATAG 59.749 60.000 23.09 0.00 0.00 2.08
335 336 1.201429 AGCCGGGCAATAGGGATAGG 61.201 60.000 23.09 0.00 0.00 2.57
336 337 1.198759 GCCGGGCAATAGGGATAGGA 61.199 60.000 15.62 0.00 0.00 2.94
337 338 1.358152 CCGGGCAATAGGGATAGGAA 58.642 55.000 0.00 0.00 0.00 3.36
338 339 1.702957 CCGGGCAATAGGGATAGGAAA 59.297 52.381 0.00 0.00 0.00 3.13
339 340 2.308866 CCGGGCAATAGGGATAGGAAAT 59.691 50.000 0.00 0.00 0.00 2.17
340 341 3.521937 CCGGGCAATAGGGATAGGAAATA 59.478 47.826 0.00 0.00 0.00 1.40
341 342 4.166144 CCGGGCAATAGGGATAGGAAATAT 59.834 45.833 0.00 0.00 0.00 1.28
342 343 5.368989 CGGGCAATAGGGATAGGAAATATC 58.631 45.833 0.00 0.00 39.78 1.63
343 344 5.131142 CGGGCAATAGGGATAGGAAATATCT 59.869 44.000 0.00 0.00 40.29 1.98
344 345 6.353082 CGGGCAATAGGGATAGGAAATATCTT 60.353 42.308 0.00 0.00 40.29 2.40
345 346 7.414266 GGGCAATAGGGATAGGAAATATCTTT 58.586 38.462 0.00 0.00 40.29 2.52
346 347 8.557450 GGGCAATAGGGATAGGAAATATCTTTA 58.443 37.037 0.00 0.00 40.29 1.85
372 373 8.458573 TTGCTTAATTCCAAAAGAGTCTTACA 57.541 30.769 5.65 0.00 0.00 2.41
373 374 8.099364 TGCTTAATTCCAAAAGAGTCTTACAG 57.901 34.615 5.65 0.00 0.00 2.74
374 375 7.024171 GCTTAATTCCAAAAGAGTCTTACAGC 58.976 38.462 5.65 0.56 0.00 4.40
375 376 5.966742 AATTCCAAAAGAGTCTTACAGCC 57.033 39.130 5.65 0.00 0.00 4.85
376 377 4.706842 TTCCAAAAGAGTCTTACAGCCT 57.293 40.909 5.65 0.00 0.00 4.58
377 378 5.818678 TTCCAAAAGAGTCTTACAGCCTA 57.181 39.130 5.65 0.00 0.00 3.93
378 379 6.374417 TTCCAAAAGAGTCTTACAGCCTAT 57.626 37.500 5.65 0.00 0.00 2.57
379 380 7.490657 TTCCAAAAGAGTCTTACAGCCTATA 57.509 36.000 5.65 0.00 0.00 1.31
380 381 7.676683 TCCAAAAGAGTCTTACAGCCTATAT 57.323 36.000 5.65 0.00 0.00 0.86
381 382 8.090788 TCCAAAAGAGTCTTACAGCCTATATT 57.909 34.615 5.65 0.00 0.00 1.28
382 383 8.548877 TCCAAAAGAGTCTTACAGCCTATATTT 58.451 33.333 5.65 0.00 0.00 1.40
383 384 9.832445 CCAAAAGAGTCTTACAGCCTATATTTA 57.168 33.333 5.65 0.00 0.00 1.40
388 389 8.973182 AGAGTCTTACAGCCTATATTTATAGCC 58.027 37.037 0.00 0.00 35.45 3.93
389 390 8.903059 AGTCTTACAGCCTATATTTATAGCCT 57.097 34.615 0.00 0.00 35.45 4.58
390 391 9.992442 AGTCTTACAGCCTATATTTATAGCCTA 57.008 33.333 0.00 0.00 35.45 3.93
429 430 9.462606 AAGAATTAACCTAAGATAACTTGTGGG 57.537 33.333 9.98 5.92 37.53 4.61
430 431 7.556635 AGAATTAACCTAAGATAACTTGTGGGC 59.443 37.037 9.98 0.00 37.53 5.36
431 432 4.929146 AACCTAAGATAACTTGTGGGCT 57.071 40.909 9.98 0.00 37.53 5.19
432 433 7.499200 TTAACCTAAGATAACTTGTGGGCTA 57.501 36.000 9.98 1.68 37.53 3.93
433 434 6.382919 AACCTAAGATAACTTGTGGGCTAA 57.617 37.500 9.98 0.00 37.53 3.09
434 435 5.990668 ACCTAAGATAACTTGTGGGCTAAG 58.009 41.667 9.98 0.00 37.53 2.18
435 436 5.724854 ACCTAAGATAACTTGTGGGCTAAGA 59.275 40.000 9.98 0.00 37.53 2.10
436 437 6.387220 ACCTAAGATAACTTGTGGGCTAAGAT 59.613 38.462 9.98 0.00 37.53 2.40
437 438 7.092399 ACCTAAGATAACTTGTGGGCTAAGATT 60.092 37.037 9.98 0.00 37.53 2.40
438 439 7.227512 CCTAAGATAACTTGTGGGCTAAGATTG 59.772 40.741 0.00 0.00 37.53 2.67
439 440 4.884164 AGATAACTTGTGGGCTAAGATTGC 59.116 41.667 0.00 0.00 0.00 3.56
440 441 7.582275 AAGATAACTTGTGGGCTAAGATTGCC 61.582 42.308 0.00 0.00 41.08 4.52
446 447 2.799176 GGCTAAGATTGCCCTGTGG 58.201 57.895 0.00 0.00 44.32 4.17
456 457 4.066614 CCCTGTGGGCCTAGCTAA 57.933 61.111 4.53 0.00 35.35 3.09
457 458 2.307153 CCCTGTGGGCCTAGCTAAA 58.693 57.895 4.53 0.00 35.35 1.85
458 459 0.107165 CCCTGTGGGCCTAGCTAAAC 60.107 60.000 4.53 0.00 35.35 2.01
459 460 0.107165 CCTGTGGGCCTAGCTAAACC 60.107 60.000 4.53 0.00 0.00 3.27
460 461 0.462047 CTGTGGGCCTAGCTAAACCG 60.462 60.000 4.53 0.00 0.00 4.44
461 462 1.153229 GTGGGCCTAGCTAAACCGG 60.153 63.158 4.53 0.00 0.00 5.28
462 463 2.203167 GGGCCTAGCTAAACCGGC 60.203 66.667 12.25 12.25 41.75 6.13
464 465 2.587889 GCCTAGCTAAACCGGCCA 59.412 61.111 10.00 0.00 36.56 5.36
465 466 1.148498 GCCTAGCTAAACCGGCCAT 59.852 57.895 10.00 0.00 36.56 4.40
466 467 0.395312 GCCTAGCTAAACCGGCCATA 59.605 55.000 10.00 0.00 36.56 2.74
1189 2975 5.928839 ACAAGTGCTACTGATACTGTGAAAG 59.071 40.000 0.00 0.00 0.00 2.62
1470 3284 6.274322 AGGAGATCCTGTCTACTATGAAGT 57.726 41.667 0.00 0.00 46.74 3.01
2250 9606 2.066393 TTCCGGAGAGGGGCTCATG 61.066 63.158 3.34 0.00 45.81 3.07
2293 9650 1.149148 GACTCAAGGTTCCTTCGCAC 58.851 55.000 0.60 0.00 0.00 5.34
2494 9882 1.210478 GTGCTCCATCCTGCTCCTTAA 59.790 52.381 0.00 0.00 0.00 1.85
2523 9911 0.673644 TTTCTTCACAGGCTAGCCGC 60.674 55.000 27.83 5.40 41.95 6.53
2582 9970 4.527564 CTGTGTTCTAGTTTCCTTTTGCG 58.472 43.478 0.00 0.00 0.00 4.85
2593 9981 2.679642 TTTTGCGCCCCTGGATGG 60.680 61.111 4.18 0.00 0.00 3.51
2634 10034 7.442969 TGGGTTATTTCATTATCGTGGTGATAC 59.557 37.037 0.00 0.00 39.28 2.24
2835 14208 2.481952 GCCAGTGAAGTTTACTGCTCTG 59.518 50.000 19.62 11.37 43.19 3.35
2857 14230 5.057149 TGTCTTTCAAGGACTAGAAGTTGC 58.943 41.667 0.83 0.00 35.04 4.17
2895 14296 1.402968 CGCTTTTCATCCATGGGTCAG 59.597 52.381 13.02 0.00 0.00 3.51
2967 14368 0.322187 GCTGGTCGTTGGGTTATGGT 60.322 55.000 0.00 0.00 0.00 3.55
2971 14372 2.905085 TGGTCGTTGGGTTATGGTCTTA 59.095 45.455 0.00 0.00 0.00 2.10
2972 14373 3.520317 TGGTCGTTGGGTTATGGTCTTAT 59.480 43.478 0.00 0.00 0.00 1.73
2973 14374 3.875134 GGTCGTTGGGTTATGGTCTTATG 59.125 47.826 0.00 0.00 0.00 1.90
2974 14375 3.875134 GTCGTTGGGTTATGGTCTTATGG 59.125 47.826 0.00 0.00 0.00 2.74
2975 14376 3.775866 TCGTTGGGTTATGGTCTTATGGA 59.224 43.478 0.00 0.00 0.00 3.41
2976 14377 3.875134 CGTTGGGTTATGGTCTTATGGAC 59.125 47.826 0.00 0.00 43.79 4.02
2977 14378 4.383770 CGTTGGGTTATGGTCTTATGGACT 60.384 45.833 0.00 0.00 43.97 3.85
2978 14379 5.506708 GTTGGGTTATGGTCTTATGGACTT 58.493 41.667 0.00 0.00 43.97 3.01
2979 14380 5.789574 TGGGTTATGGTCTTATGGACTTT 57.210 39.130 0.00 0.00 43.97 2.66
2980 14381 6.894735 TGGGTTATGGTCTTATGGACTTTA 57.105 37.500 0.00 0.00 43.97 1.85
2981 14382 7.273457 TGGGTTATGGTCTTATGGACTTTAA 57.727 36.000 0.00 0.00 43.97 1.52
2982 14383 7.878495 TGGGTTATGGTCTTATGGACTTTAAT 58.122 34.615 0.00 0.00 43.97 1.40
2983 14384 8.340757 TGGGTTATGGTCTTATGGACTTTAATT 58.659 33.333 0.00 0.00 43.97 1.40
2984 14385 9.856162 GGGTTATGGTCTTATGGACTTTAATTA 57.144 33.333 0.00 0.00 43.97 1.40
2991 14392 9.000486 GGTCTTATGGACTTTAATTATACTGGC 58.000 37.037 0.00 0.00 43.97 4.85
2992 14393 9.555727 GTCTTATGGACTTTAATTATACTGGCA 57.444 33.333 0.00 0.00 41.46 4.92
2997 14398 7.531716 TGGACTTTAATTATACTGGCAAAACG 58.468 34.615 0.00 0.00 0.00 3.60
2998 14399 6.970613 GGACTTTAATTATACTGGCAAAACGG 59.029 38.462 0.00 0.00 0.00 4.44
2999 14400 6.327154 ACTTTAATTATACTGGCAAAACGGC 58.673 36.000 0.00 0.00 41.67 5.68
3008 14409 2.826277 GCAAAACGGCCTTCCATTG 58.174 52.632 0.00 0.00 0.00 2.82
3009 14410 1.291184 GCAAAACGGCCTTCCATTGC 61.291 55.000 0.00 6.39 38.23 3.56
3010 14411 0.033228 CAAAACGGCCTTCCATTGCA 59.967 50.000 0.00 0.00 0.00 4.08
3011 14412 0.755686 AAAACGGCCTTCCATTGCAA 59.244 45.000 0.00 0.00 0.00 4.08
3012 14413 0.975887 AAACGGCCTTCCATTGCAAT 59.024 45.000 5.99 5.99 0.00 3.56
3013 14414 0.247185 AACGGCCTTCCATTGCAATG 59.753 50.000 28.91 28.91 36.17 2.82
3058 14459 8.918961 TGGATTTTAATTATACCAGCAAAACG 57.081 30.769 0.00 0.00 0.00 3.60
3059 14460 7.976734 TGGATTTTAATTATACCAGCAAAACGG 59.023 33.333 0.00 0.00 0.00 4.44
3060 14461 7.977293 GGATTTTAATTATACCAGCAAAACGGT 59.023 33.333 0.00 0.00 39.41 4.83
3061 14462 9.361315 GATTTTAATTATACCAGCAAAACGGTT 57.639 29.630 0.00 0.00 36.69 4.44
3062 14463 8.745464 TTTTAATTATACCAGCAAAACGGTTC 57.255 30.769 0.00 0.00 36.69 3.62
3063 14464 5.968528 AATTATACCAGCAAAACGGTTCA 57.031 34.783 0.00 0.00 36.69 3.18
3064 14465 6.524101 AATTATACCAGCAAAACGGTTCAT 57.476 33.333 0.00 0.00 36.69 2.57
3065 14466 3.848272 ATACCAGCAAAACGGTTCATG 57.152 42.857 0.00 0.00 36.69 3.07
3066 14467 0.031994 ACCAGCAAAACGGTTCATGC 59.968 50.000 18.50 18.50 39.06 4.06
3067 14468 0.031857 CCAGCAAAACGGTTCATGCA 59.968 50.000 24.40 0.00 41.18 3.96
3068 14469 1.337074 CCAGCAAAACGGTTCATGCAT 60.337 47.619 24.40 0.00 41.18 3.96
3069 14470 2.406130 CAGCAAAACGGTTCATGCATT 58.594 42.857 24.40 9.64 41.18 3.56
3070 14471 2.156117 CAGCAAAACGGTTCATGCATTG 59.844 45.455 24.40 15.46 41.18 2.82
3071 14472 1.136280 GCAAAACGGTTCATGCATTGC 60.136 47.619 20.24 15.10 38.63 3.56
3072 14473 2.133553 CAAAACGGTTCATGCATTGCA 58.866 42.857 14.72 14.72 44.86 4.08
3073 14474 2.522836 AAACGGTTCATGCATTGCAA 57.477 40.000 16.46 0.00 43.62 4.08
3074 14475 2.747396 AACGGTTCATGCATTGCAAT 57.253 40.000 16.46 5.99 43.62 3.56
3075 14476 1.999048 ACGGTTCATGCATTGCAATG 58.001 45.000 30.92 30.92 43.62 2.82
3076 14477 1.282817 CGGTTCATGCATTGCAATGG 58.717 50.000 34.23 21.08 43.62 3.16
3077 14478 1.135053 CGGTTCATGCATTGCAATGGA 60.135 47.619 34.23 33.10 43.62 3.41
3078 14479 2.674462 CGGTTCATGCATTGCAATGGAA 60.674 45.455 33.06 25.50 43.62 3.53
3079 14480 2.933906 GGTTCATGCATTGCAATGGAAG 59.066 45.455 33.06 28.73 43.62 3.46
3080 14481 3.368635 GGTTCATGCATTGCAATGGAAGA 60.369 43.478 33.06 30.33 43.62 2.87
3081 14482 4.247258 GTTCATGCATTGCAATGGAAGAA 58.753 39.130 33.57 33.57 43.62 2.52
3082 14483 4.538746 TCATGCATTGCAATGGAAGAAA 57.461 36.364 33.06 17.73 43.62 2.52
3083 14484 4.895961 TCATGCATTGCAATGGAAGAAAA 58.104 34.783 33.06 13.65 43.62 2.29
3084 14485 5.306394 TCATGCATTGCAATGGAAGAAAAA 58.694 33.333 33.06 13.31 43.62 1.94
3106 14507 6.872585 AAAAATCATAATCTCCAAAGGCCA 57.127 33.333 5.01 0.00 0.00 5.36
3107 14508 7.441903 AAAAATCATAATCTCCAAAGGCCAT 57.558 32.000 5.01 0.00 0.00 4.40
3108 14509 6.415206 AAATCATAATCTCCAAAGGCCATG 57.585 37.500 5.01 3.01 0.00 3.66
3109 14510 4.794311 TCATAATCTCCAAAGGCCATGA 57.206 40.909 5.01 0.00 0.00 3.07
3110 14511 4.464008 TCATAATCTCCAAAGGCCATGAC 58.536 43.478 5.01 0.00 0.00 3.06
3111 14512 2.149973 AATCTCCAAAGGCCATGACC 57.850 50.000 5.01 0.00 0.00 4.02
3112 14513 0.107017 ATCTCCAAAGGCCATGACCG 60.107 55.000 5.01 0.00 33.69 4.79
3113 14514 2.361104 TCCAAAGGCCATGACCGC 60.361 61.111 5.01 0.00 33.69 5.68
3114 14515 2.676121 CCAAAGGCCATGACCGCA 60.676 61.111 5.01 0.00 33.69 5.69
3115 14516 2.053865 CCAAAGGCCATGACCGCAT 61.054 57.895 5.01 0.00 34.29 4.73
3116 14517 1.606885 CCAAAGGCCATGACCGCATT 61.607 55.000 5.01 0.00 30.68 3.56
3117 14518 0.247185 CAAAGGCCATGACCGCATTT 59.753 50.000 5.01 0.00 40.55 2.32
3118 14519 0.975887 AAAGGCCATGACCGCATTTT 59.024 45.000 5.01 0.00 36.92 1.82
3119 14520 0.247185 AAGGCCATGACCGCATTTTG 59.753 50.000 5.01 0.00 30.68 2.44
3120 14521 1.810853 GGCCATGACCGCATTTTGC 60.811 57.895 0.00 0.00 40.69 3.68
3121 14522 1.216178 GCCATGACCGCATTTTGCT 59.784 52.632 0.00 0.00 42.25 3.91
3122 14523 0.455410 GCCATGACCGCATTTTGCTA 59.545 50.000 0.00 0.00 42.25 3.49
3123 14524 1.798813 GCCATGACCGCATTTTGCTAC 60.799 52.381 0.00 0.00 42.25 3.58
3124 14525 1.472082 CCATGACCGCATTTTGCTACA 59.528 47.619 0.00 0.00 42.25 2.74
3125 14526 2.099592 CCATGACCGCATTTTGCTACAT 59.900 45.455 0.00 0.00 42.25 2.29
3126 14527 3.365832 CATGACCGCATTTTGCTACATC 58.634 45.455 0.00 0.00 42.25 3.06
3127 14528 2.431454 TGACCGCATTTTGCTACATCA 58.569 42.857 0.00 0.00 42.25 3.07
3128 14529 2.161410 TGACCGCATTTTGCTACATCAC 59.839 45.455 0.00 0.00 42.25 3.06
3129 14530 2.420022 GACCGCATTTTGCTACATCACT 59.580 45.455 0.00 0.00 42.25 3.41
3130 14531 2.162208 ACCGCATTTTGCTACATCACTG 59.838 45.455 0.00 0.00 42.25 3.66
3131 14532 2.419673 CCGCATTTTGCTACATCACTGA 59.580 45.455 0.00 0.00 42.25 3.41
3132 14533 3.486375 CCGCATTTTGCTACATCACTGAG 60.486 47.826 0.00 0.00 42.25 3.35
3133 14534 3.371898 CGCATTTTGCTACATCACTGAGA 59.628 43.478 0.00 0.00 42.25 3.27
3134 14535 4.034858 CGCATTTTGCTACATCACTGAGAT 59.965 41.667 0.00 0.00 42.25 2.75
3143 14544 2.914059 CATCACTGAGATGCACCATCA 58.086 47.619 7.83 0.00 46.90 3.07
3144 14545 2.391616 TCACTGAGATGCACCATCAC 57.608 50.000 7.83 2.40 42.72 3.06
3145 14546 1.904537 TCACTGAGATGCACCATCACT 59.095 47.619 7.83 0.00 42.72 3.41
3146 14547 2.093816 TCACTGAGATGCACCATCACTC 60.094 50.000 7.83 0.00 42.72 3.51
3147 14548 2.093606 CACTGAGATGCACCATCACTCT 60.094 50.000 7.83 0.00 42.72 3.24
3148 14549 2.168106 ACTGAGATGCACCATCACTCTC 59.832 50.000 7.83 4.60 42.72 3.20
3149 14550 2.167900 CTGAGATGCACCATCACTCTCA 59.832 50.000 12.14 12.14 42.72 3.27
3150 14551 2.770232 TGAGATGCACCATCACTCTCAT 59.230 45.455 9.33 0.00 42.72 2.90
3151 14552 3.199289 TGAGATGCACCATCACTCTCATT 59.801 43.478 9.33 0.00 42.72 2.57
3152 14553 4.197750 GAGATGCACCATCACTCTCATTT 58.802 43.478 6.40 0.00 42.72 2.32
3153 14554 4.597004 AGATGCACCATCACTCTCATTTT 58.403 39.130 7.83 0.00 42.72 1.82
3154 14555 4.639310 AGATGCACCATCACTCTCATTTTC 59.361 41.667 7.83 0.00 42.72 2.29
3155 14556 3.753815 TGCACCATCACTCTCATTTTCA 58.246 40.909 0.00 0.00 0.00 2.69
3156 14557 4.338012 TGCACCATCACTCTCATTTTCAT 58.662 39.130 0.00 0.00 0.00 2.57
3157 14558 4.157105 TGCACCATCACTCTCATTTTCATG 59.843 41.667 0.00 0.00 0.00 3.07
3158 14559 4.397103 GCACCATCACTCTCATTTTCATGA 59.603 41.667 0.00 0.00 37.05 3.07
3159 14560 5.067413 GCACCATCACTCTCATTTTCATGAT 59.933 40.000 0.00 0.00 38.81 2.45
3160 14561 6.261603 GCACCATCACTCTCATTTTCATGATA 59.738 38.462 0.00 0.00 38.81 2.15
3161 14562 7.040617 GCACCATCACTCTCATTTTCATGATAT 60.041 37.037 0.00 0.00 38.81 1.63
3162 14563 8.504815 CACCATCACTCTCATTTTCATGATATC 58.495 37.037 0.00 0.00 38.81 1.63
3163 14564 7.387122 ACCATCACTCTCATTTTCATGATATCG 59.613 37.037 0.00 0.00 38.81 2.92
3164 14565 7.387122 CCATCACTCTCATTTTCATGATATCGT 59.613 37.037 0.00 0.00 38.81 3.73
3165 14566 7.704789 TCACTCTCATTTTCATGATATCGTG 57.295 36.000 17.42 17.42 38.81 4.35
3166 14567 7.491682 TCACTCTCATTTTCATGATATCGTGA 58.508 34.615 21.31 21.31 38.81 4.35
3167 14568 7.981225 TCACTCTCATTTTCATGATATCGTGAA 59.019 33.333 28.66 28.66 46.63 3.18
3205 14606 9.480053 AATCATGGACATTTTCTAAAACTTGTG 57.520 29.630 0.00 0.00 0.00 3.33
3206 14607 8.231692 TCATGGACATTTTCTAAAACTTGTGA 57.768 30.769 0.00 0.00 0.00 3.58
3207 14608 8.690884 TCATGGACATTTTCTAAAACTTGTGAA 58.309 29.630 0.00 0.00 0.00 3.18
3208 14609 8.755018 CATGGACATTTTCTAAAACTTGTGAAC 58.245 33.333 0.45 0.00 0.00 3.18
3209 14610 7.831753 TGGACATTTTCTAAAACTTGTGAACA 58.168 30.769 0.45 0.00 0.00 3.18
3210 14611 8.474025 TGGACATTTTCTAAAACTTGTGAACAT 58.526 29.630 0.45 0.00 0.00 2.71
3211 14612 9.959749 GGACATTTTCTAAAACTTGTGAACATA 57.040 29.630 0.45 0.00 0.00 2.29
3283 14684 9.781633 AAATCCTGAACATTTTTGAATTCATGA 57.218 25.926 9.40 0.00 32.61 3.07
3284 14685 9.781633 AATCCTGAACATTTTTGAATTCATGAA 57.218 25.926 11.26 11.26 32.08 2.57
3285 14686 8.592105 TCCTGAACATTTTTGAATTCATGAAC 57.408 30.769 11.07 0.00 31.00 3.18
3286 14687 8.202811 TCCTGAACATTTTTGAATTCATGAACA 58.797 29.630 11.07 2.12 31.00 3.18
3287 14688 8.995220 CCTGAACATTTTTGAATTCATGAACAT 58.005 29.630 11.07 2.44 31.00 2.71
3350 14751 9.744468 TTTCTAAAACATTTTTCTTGAGTAGGC 57.256 29.630 0.00 0.00 0.00 3.93
3351 14752 8.458573 TCTAAAACATTTTTCTTGAGTAGGCA 57.541 30.769 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.545481 CACCGCGCTGATGACGAC 61.545 66.667 5.61 0.00 0.00 4.34
34 35 3.683587 CTCACCGCGCTGATGACGA 62.684 63.158 5.61 0.00 0.00 4.20
35 36 3.250323 CTCACCGCGCTGATGACG 61.250 66.667 5.61 0.00 0.00 4.35
36 37 2.887568 CCTCACCGCGCTGATGAC 60.888 66.667 5.61 0.00 0.00 3.06
37 38 4.147449 CCCTCACCGCGCTGATGA 62.147 66.667 5.61 5.37 0.00 2.92
62 63 4.175489 ACCGCTCCGATGACGACG 62.175 66.667 0.00 0.00 42.66 5.12
63 64 2.579787 CACCGCTCCGATGACGAC 60.580 66.667 0.00 0.00 42.66 4.34
64 65 3.822192 CCACCGCTCCGATGACGA 61.822 66.667 0.00 0.00 42.66 4.20
65 66 3.758088 CTCCACCGCTCCGATGACG 62.758 68.421 0.00 0.00 39.43 4.35
66 67 2.105128 CTCCACCGCTCCGATGAC 59.895 66.667 0.00 0.00 0.00 3.06
67 68 3.838271 GCTCCACCGCTCCGATGA 61.838 66.667 0.00 0.00 0.00 2.92
68 69 4.899239 GGCTCCACCGCTCCGATG 62.899 72.222 0.00 0.00 0.00 3.84
77 78 4.767255 CTGTCCAGCGGCTCCACC 62.767 72.222 0.00 0.00 0.00 4.61
87 88 4.498520 ATCGCCGACGCTGTCCAG 62.499 66.667 0.00 0.00 39.84 3.86
88 89 4.794439 CATCGCCGACGCTGTCCA 62.794 66.667 0.00 0.00 39.84 4.02
90 91 4.796231 ACCATCGCCGACGCTGTC 62.796 66.667 0.00 0.00 39.84 3.51
101 102 4.758251 TCGCAGCCACCACCATCG 62.758 66.667 0.00 0.00 0.00 3.84
102 103 3.127533 GTCGCAGCCACCACCATC 61.128 66.667 0.00 0.00 0.00 3.51
103 104 3.272364 ATGTCGCAGCCACCACCAT 62.272 57.895 0.00 0.00 0.00 3.55
104 105 3.952508 ATGTCGCAGCCACCACCA 61.953 61.111 0.00 0.00 0.00 4.17
105 106 3.434319 CATGTCGCAGCCACCACC 61.434 66.667 0.00 0.00 0.00 4.61
106 107 1.709147 GATCATGTCGCAGCCACCAC 61.709 60.000 0.00 0.00 0.00 4.16
107 108 1.450134 GATCATGTCGCAGCCACCA 60.450 57.895 0.00 0.00 0.00 4.17
108 109 1.153289 AGATCATGTCGCAGCCACC 60.153 57.895 0.00 0.00 0.00 4.61
109 110 0.460811 TCAGATCATGTCGCAGCCAC 60.461 55.000 0.00 0.00 0.00 5.01
110 111 0.249955 TTCAGATCATGTCGCAGCCA 59.750 50.000 0.00 0.00 0.00 4.75
111 112 0.654683 GTTCAGATCATGTCGCAGCC 59.345 55.000 0.00 0.00 0.00 4.85
112 113 1.649664 AGTTCAGATCATGTCGCAGC 58.350 50.000 0.00 0.00 0.00 5.25
113 114 2.350804 CCAAGTTCAGATCATGTCGCAG 59.649 50.000 0.00 0.00 0.00 5.18
114 115 2.289631 ACCAAGTTCAGATCATGTCGCA 60.290 45.455 0.00 0.00 0.00 5.10
115 116 2.349886 GACCAAGTTCAGATCATGTCGC 59.650 50.000 0.00 0.00 0.00 5.19
116 117 3.854666 AGACCAAGTTCAGATCATGTCG 58.145 45.455 0.00 0.00 0.00 4.35
117 118 4.869297 CAGAGACCAAGTTCAGATCATGTC 59.131 45.833 0.00 0.00 0.00 3.06
118 119 4.529769 TCAGAGACCAAGTTCAGATCATGT 59.470 41.667 0.00 0.00 0.00 3.21
119 120 5.082251 TCAGAGACCAAGTTCAGATCATG 57.918 43.478 0.00 0.00 0.00 3.07
120 121 5.954153 ATCAGAGACCAAGTTCAGATCAT 57.046 39.130 0.00 0.00 0.00 2.45
121 122 5.752036 AATCAGAGACCAAGTTCAGATCA 57.248 39.130 0.00 0.00 0.00 2.92
122 123 6.045955 GGTAATCAGAGACCAAGTTCAGATC 58.954 44.000 0.12 0.00 35.65 2.75
123 124 5.485353 TGGTAATCAGAGACCAAGTTCAGAT 59.515 40.000 4.73 0.00 42.81 2.90
124 125 4.838423 TGGTAATCAGAGACCAAGTTCAGA 59.162 41.667 4.73 0.00 42.81 3.27
125 126 5.152623 TGGTAATCAGAGACCAAGTTCAG 57.847 43.478 4.73 0.00 42.81 3.02
143 144 9.863898 AGGAACCCTAGTCCTACCAATTTGGTA 62.864 44.444 23.53 23.53 40.03 3.25
144 145 9.863898 TAGGAACCCTAGTCCTACCAATTTGGT 62.864 44.444 23.83 23.83 43.88 3.67
145 146 4.524053 GAACCCTAGTCCTACCAATTTGG 58.476 47.826 14.02 14.02 45.02 3.28
146 147 4.227527 AGGAACCCTAGTCCTACCAATTTG 59.772 45.833 0.00 0.00 31.06 2.32
147 148 4.445564 AGGAACCCTAGTCCTACCAATTT 58.554 43.478 0.00 0.00 31.06 1.82
148 149 4.090027 AGGAACCCTAGTCCTACCAATT 57.910 45.455 0.00 0.00 31.06 2.32
149 150 3.797671 AGGAACCCTAGTCCTACCAAT 57.202 47.619 0.00 0.00 31.06 3.16
150 151 3.986435 GTAGGAACCCTAGTCCTACCAA 58.014 50.000 20.22 0.00 46.18 3.67
151 152 3.677156 GTAGGAACCCTAGTCCTACCA 57.323 52.381 20.22 0.00 46.18 3.25
154 155 1.496429 CCGGTAGGAACCCTAGTCCTA 59.504 57.143 3.95 3.95 43.54 2.94
155 156 0.261109 CCGGTAGGAACCCTAGTCCT 59.739 60.000 5.75 5.75 43.54 3.85
156 157 1.398174 GCCGGTAGGAACCCTAGTCC 61.398 65.000 1.90 0.00 43.54 3.85
157 158 0.396835 AGCCGGTAGGAACCCTAGTC 60.397 60.000 1.90 0.00 43.54 2.59
158 159 0.396835 GAGCCGGTAGGAACCCTAGT 60.397 60.000 1.90 0.00 43.54 2.57
159 160 0.106116 AGAGCCGGTAGGAACCCTAG 60.106 60.000 1.90 0.00 43.54 3.02
160 161 1.133668 GTAGAGCCGGTAGGAACCCTA 60.134 57.143 1.90 0.00 43.54 3.53
161 162 0.396835 GTAGAGCCGGTAGGAACCCT 60.397 60.000 1.90 0.00 43.54 4.34
162 163 0.396835 AGTAGAGCCGGTAGGAACCC 60.397 60.000 1.90 0.00 43.54 4.11
163 164 1.031235 GAGTAGAGCCGGTAGGAACC 58.969 60.000 1.90 0.00 42.95 3.62
164 165 1.031235 GGAGTAGAGCCGGTAGGAAC 58.969 60.000 1.90 0.00 41.02 3.62
165 166 0.924823 AGGAGTAGAGCCGGTAGGAA 59.075 55.000 1.90 0.00 41.02 3.36
166 167 0.924823 AAGGAGTAGAGCCGGTAGGA 59.075 55.000 1.90 0.00 41.02 2.94
167 168 2.506444 CTAAGGAGTAGAGCCGGTAGG 58.494 57.143 1.90 0.00 34.31 3.18
168 169 2.158638 ACCTAAGGAGTAGAGCCGGTAG 60.159 54.545 1.90 0.00 30.50 3.18
169 170 1.849039 ACCTAAGGAGTAGAGCCGGTA 59.151 52.381 1.90 0.00 30.50 4.02
170 171 0.630134 ACCTAAGGAGTAGAGCCGGT 59.370 55.000 1.90 0.00 30.50 5.28
171 172 1.777941 AACCTAAGGAGTAGAGCCGG 58.222 55.000 0.00 0.00 30.50 6.13
172 173 5.183522 CCTTATAACCTAAGGAGTAGAGCCG 59.816 48.000 5.28 0.00 45.24 5.52
173 174 5.481122 CCCTTATAACCTAAGGAGTAGAGCC 59.519 48.000 11.70 0.00 45.24 4.70
174 175 5.047164 GCCCTTATAACCTAAGGAGTAGAGC 60.047 48.000 11.70 3.18 45.24 4.09
175 176 6.075984 TGCCCTTATAACCTAAGGAGTAGAG 58.924 44.000 11.70 0.00 45.24 2.43
176 177 6.034442 TGCCCTTATAACCTAAGGAGTAGA 57.966 41.667 11.70 0.00 45.24 2.59
177 178 6.075984 TCTGCCCTTATAACCTAAGGAGTAG 58.924 44.000 11.70 10.29 45.24 2.57
178 179 6.034442 TCTGCCCTTATAACCTAAGGAGTA 57.966 41.667 11.70 2.69 45.24 2.59
179 180 4.892198 TCTGCCCTTATAACCTAAGGAGT 58.108 43.478 11.70 0.00 45.24 3.85
180 181 5.130477 TGTTCTGCCCTTATAACCTAAGGAG 59.870 44.000 11.70 3.75 45.24 3.69
181 182 5.034200 TGTTCTGCCCTTATAACCTAAGGA 58.966 41.667 11.70 0.00 45.24 3.36
182 183 5.367945 TGTTCTGCCCTTATAACCTAAGG 57.632 43.478 4.38 4.38 42.78 2.69
183 184 4.816925 GCTGTTCTGCCCTTATAACCTAAG 59.183 45.833 0.00 0.00 0.00 2.18
184 185 4.682320 CGCTGTTCTGCCCTTATAACCTAA 60.682 45.833 0.00 0.00 0.00 2.69
185 186 3.181469 CGCTGTTCTGCCCTTATAACCTA 60.181 47.826 0.00 0.00 0.00 3.08
186 187 2.420129 CGCTGTTCTGCCCTTATAACCT 60.420 50.000 0.00 0.00 0.00 3.50
187 188 1.940613 CGCTGTTCTGCCCTTATAACC 59.059 52.381 0.00 0.00 0.00 2.85
188 189 1.940613 CCGCTGTTCTGCCCTTATAAC 59.059 52.381 0.00 0.00 0.00 1.89
189 190 1.834896 TCCGCTGTTCTGCCCTTATAA 59.165 47.619 0.00 0.00 0.00 0.98
190 191 1.412710 CTCCGCTGTTCTGCCCTTATA 59.587 52.381 0.00 0.00 0.00 0.98
191 192 0.179000 CTCCGCTGTTCTGCCCTTAT 59.821 55.000 0.00 0.00 0.00 1.73
192 193 1.596934 CTCCGCTGTTCTGCCCTTA 59.403 57.895 0.00 0.00 0.00 2.69
193 194 2.348998 CTCCGCTGTTCTGCCCTT 59.651 61.111 0.00 0.00 0.00 3.95
194 195 3.710722 CCTCCGCTGTTCTGCCCT 61.711 66.667 0.00 0.00 0.00 5.19
195 196 3.553095 AACCTCCGCTGTTCTGCCC 62.553 63.158 0.00 0.00 0.00 5.36
196 197 2.032681 AACCTCCGCTGTTCTGCC 59.967 61.111 0.00 0.00 0.00 4.85
197 198 2.328099 CCAACCTCCGCTGTTCTGC 61.328 63.158 0.00 0.00 0.00 4.26
198 199 1.672356 CCCAACCTCCGCTGTTCTG 60.672 63.158 0.00 0.00 0.00 3.02
199 200 2.750350 CCCAACCTCCGCTGTTCT 59.250 61.111 0.00 0.00 0.00 3.01
200 201 2.359975 CCCCAACCTCCGCTGTTC 60.360 66.667 0.00 0.00 0.00 3.18
201 202 3.966543 CCCCCAACCTCCGCTGTT 61.967 66.667 0.00 0.00 0.00 3.16
246 247 4.856607 CTCTTCCCTCGCGACGGC 62.857 72.222 18.06 0.00 0.00 5.68
247 248 4.194720 CCTCTTCCCTCGCGACGG 62.195 72.222 16.94 16.94 0.00 4.79
248 249 3.114647 CTCCTCTTCCCTCGCGACG 62.115 68.421 3.71 0.04 0.00 5.12
249 250 2.776913 CCTCCTCTTCCCTCGCGAC 61.777 68.421 3.71 0.00 0.00 5.19
250 251 2.440430 CCTCCTCTTCCCTCGCGA 60.440 66.667 9.26 9.26 0.00 5.87
251 252 3.532155 CCCTCCTCTTCCCTCGCG 61.532 72.222 0.00 0.00 0.00 5.87
252 253 3.855853 GCCCTCCTCTTCCCTCGC 61.856 72.222 0.00 0.00 0.00 5.03
253 254 3.532155 CGCCCTCCTCTTCCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
254 255 3.157949 CCGCCCTCCTCTTCCCTC 61.158 72.222 0.00 0.00 0.00 4.30
291 292 4.222847 GAGCCGGAACCCTAGCCG 62.223 72.222 5.05 0.00 46.80 5.52
292 293 3.862991 GGAGCCGGAACCCTAGCC 61.863 72.222 5.05 0.00 0.00 3.93
293 294 2.764547 AGGAGCCGGAACCCTAGC 60.765 66.667 5.05 0.00 0.00 3.42
294 295 1.075896 AGAGGAGCCGGAACCCTAG 60.076 63.158 5.05 0.00 0.00 3.02
295 296 1.381327 CAGAGGAGCCGGAACCCTA 60.381 63.158 5.05 0.00 0.00 3.53
296 297 2.685380 CAGAGGAGCCGGAACCCT 60.685 66.667 5.05 7.67 0.00 4.34
297 298 3.787001 CCAGAGGAGCCGGAACCC 61.787 72.222 5.05 1.57 0.00 4.11
298 299 3.787001 CCCAGAGGAGCCGGAACC 61.787 72.222 5.05 7.56 33.47 3.62
299 300 2.683933 TCCCAGAGGAGCCGGAAC 60.684 66.667 5.05 0.00 37.19 3.62
309 310 2.388890 CTATTGCCCGGCTCCCAGAG 62.389 65.000 11.61 0.00 0.00 3.35
310 311 2.366301 TATTGCCCGGCTCCCAGA 60.366 61.111 11.61 0.00 0.00 3.86
311 312 2.111878 CTATTGCCCGGCTCCCAG 59.888 66.667 11.61 0.00 0.00 4.45
312 313 3.488569 CCTATTGCCCGGCTCCCA 61.489 66.667 11.61 0.00 0.00 4.37
313 314 4.271016 CCCTATTGCCCGGCTCCC 62.271 72.222 11.61 0.00 0.00 4.30
314 315 1.198759 TATCCCTATTGCCCGGCTCC 61.199 60.000 11.61 0.00 0.00 4.70
315 316 0.250513 CTATCCCTATTGCCCGGCTC 59.749 60.000 11.61 0.00 0.00 4.70
316 317 1.201429 CCTATCCCTATTGCCCGGCT 61.201 60.000 11.61 0.00 0.00 5.52
317 318 1.198759 TCCTATCCCTATTGCCCGGC 61.199 60.000 1.04 1.04 0.00 6.13
318 319 1.358152 TTCCTATCCCTATTGCCCGG 58.642 55.000 0.00 0.00 0.00 5.73
319 320 3.721087 ATTTCCTATCCCTATTGCCCG 57.279 47.619 0.00 0.00 0.00 6.13
320 321 6.582929 AGATATTTCCTATCCCTATTGCCC 57.417 41.667 0.00 0.00 37.53 5.36
346 347 9.077885 TGTAAGACTCTTTTGGAATTAAGCAAT 57.922 29.630 0.00 0.00 0.00 3.56
347 348 8.458573 TGTAAGACTCTTTTGGAATTAAGCAA 57.541 30.769 0.00 0.00 0.00 3.91
348 349 7.308589 GCTGTAAGACTCTTTTGGAATTAAGCA 60.309 37.037 0.00 0.00 34.07 3.91
349 350 7.024171 GCTGTAAGACTCTTTTGGAATTAAGC 58.976 38.462 0.00 0.00 34.07 3.09
350 351 7.530863 GGCTGTAAGACTCTTTTGGAATTAAG 58.469 38.462 0.00 0.00 40.68 1.85
351 352 7.448748 GGCTGTAAGACTCTTTTGGAATTAA 57.551 36.000 0.00 0.00 40.68 1.40
353 354 5.966742 GGCTGTAAGACTCTTTTGGAATT 57.033 39.130 0.00 0.00 40.68 2.17
403 404 9.462606 CCCACAAGTTATCTTAGGTTAATTCTT 57.537 33.333 0.00 0.00 32.07 2.52
404 405 7.556635 GCCCACAAGTTATCTTAGGTTAATTCT 59.443 37.037 0.00 0.00 32.07 2.40
405 406 7.556635 AGCCCACAAGTTATCTTAGGTTAATTC 59.443 37.037 0.00 0.00 32.07 2.17
406 407 7.410991 AGCCCACAAGTTATCTTAGGTTAATT 58.589 34.615 4.43 0.00 32.07 1.40
407 408 6.970191 AGCCCACAAGTTATCTTAGGTTAAT 58.030 36.000 4.43 0.00 32.07 1.40
408 409 6.382919 AGCCCACAAGTTATCTTAGGTTAA 57.617 37.500 4.43 0.00 32.07 2.01
409 410 7.400915 TCTTAGCCCACAAGTTATCTTAGGTTA 59.599 37.037 4.43 0.00 32.07 2.85
410 411 4.929146 AGCCCACAAGTTATCTTAGGTT 57.071 40.909 4.43 0.00 32.07 3.50
411 412 5.724854 TCTTAGCCCACAAGTTATCTTAGGT 59.275 40.000 4.43 0.00 32.07 3.08
412 413 6.235231 TCTTAGCCCACAAGTTATCTTAGG 57.765 41.667 0.00 0.00 32.07 2.69
413 414 7.254932 GCAATCTTAGCCCACAAGTTATCTTAG 60.255 40.741 0.00 0.00 32.07 2.18
414 415 6.542370 GCAATCTTAGCCCACAAGTTATCTTA 59.458 38.462 0.00 0.00 32.07 2.10
415 416 5.358160 GCAATCTTAGCCCACAAGTTATCTT 59.642 40.000 0.00 0.00 0.00 2.40
416 417 4.884164 GCAATCTTAGCCCACAAGTTATCT 59.116 41.667 0.00 0.00 0.00 1.98
417 418 4.036852 GGCAATCTTAGCCCACAAGTTATC 59.963 45.833 0.00 0.00 46.50 1.75
418 419 3.954258 GGCAATCTTAGCCCACAAGTTAT 59.046 43.478 0.00 0.00 46.50 1.89
419 420 3.352648 GGCAATCTTAGCCCACAAGTTA 58.647 45.455 0.00 0.00 46.50 2.24
420 421 2.171003 GGCAATCTTAGCCCACAAGTT 58.829 47.619 0.00 0.00 46.50 2.66
421 422 1.839424 GGCAATCTTAGCCCACAAGT 58.161 50.000 0.00 0.00 46.50 3.16
429 430 2.799176 CCCACAGGGCAATCTTAGC 58.201 57.895 0.00 0.00 35.35 3.09
440 441 0.107165 GGTTTAGCTAGGCCCACAGG 60.107 60.000 0.00 0.00 0.00 4.00
441 442 0.462047 CGGTTTAGCTAGGCCCACAG 60.462 60.000 0.00 0.00 0.00 3.66
442 443 1.600107 CGGTTTAGCTAGGCCCACA 59.400 57.895 0.00 0.00 0.00 4.17
443 444 1.153229 CCGGTTTAGCTAGGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
444 445 3.038945 GCCGGTTTAGCTAGGCCCA 62.039 63.158 10.00 0.00 43.54 5.36
445 446 2.203167 GCCGGTTTAGCTAGGCCC 60.203 66.667 10.00 3.43 43.54 5.80
448 449 2.158871 TGTTATGGCCGGTTTAGCTAGG 60.159 50.000 1.90 0.00 0.00 3.02
449 450 3.131396 CTGTTATGGCCGGTTTAGCTAG 58.869 50.000 1.90 0.00 0.00 3.42
450 451 2.502538 ACTGTTATGGCCGGTTTAGCTA 59.497 45.455 1.90 0.00 0.00 3.32
451 452 1.280998 ACTGTTATGGCCGGTTTAGCT 59.719 47.619 1.90 0.00 0.00 3.32
452 453 1.746470 ACTGTTATGGCCGGTTTAGC 58.254 50.000 1.90 0.00 0.00 3.09
453 454 4.093850 GTGTTACTGTTATGGCCGGTTTAG 59.906 45.833 1.90 0.00 0.00 1.85
454 455 4.002316 GTGTTACTGTTATGGCCGGTTTA 58.998 43.478 1.90 0.00 0.00 2.01
455 456 2.815503 GTGTTACTGTTATGGCCGGTTT 59.184 45.455 1.90 0.00 0.00 3.27
456 457 2.429478 GTGTTACTGTTATGGCCGGTT 58.571 47.619 1.90 0.00 0.00 4.44
457 458 1.339342 GGTGTTACTGTTATGGCCGGT 60.339 52.381 1.90 0.00 0.00 5.28
458 459 1.375551 GGTGTTACTGTTATGGCCGG 58.624 55.000 0.00 0.00 0.00 6.13
459 460 1.065709 AGGGTGTTACTGTTATGGCCG 60.066 52.381 0.00 0.00 0.00 6.13
460 461 2.801077 AGGGTGTTACTGTTATGGCC 57.199 50.000 0.00 0.00 0.00 5.36
461 462 6.376018 TGATAAAAGGGTGTTACTGTTATGGC 59.624 38.462 0.00 0.00 30.45 4.40
462 463 7.610305 ACTGATAAAAGGGTGTTACTGTTATGG 59.390 37.037 0.00 0.00 30.45 2.74
463 464 8.561738 ACTGATAAAAGGGTGTTACTGTTATG 57.438 34.615 0.00 0.00 30.45 1.90
465 466 9.492973 GTAACTGATAAAAGGGTGTTACTGTTA 57.507 33.333 0.00 0.00 37.68 2.41
466 467 8.215736 AGTAACTGATAAAAGGGTGTTACTGTT 58.784 33.333 13.30 0.00 44.38 3.16
645 657 5.880054 AACATCACTAAATGTGCTACCAC 57.120 39.130 0.00 0.00 45.81 4.16
1189 2975 3.680458 GTCTGAGGACGAAAATGAGAACC 59.320 47.826 0.00 0.00 32.47 3.62
1464 3278 3.773119 ACGTACCCCACATTCTACTTCAT 59.227 43.478 0.00 0.00 0.00 2.57
1470 3284 3.056393 CACTTCACGTACCCCACATTCTA 60.056 47.826 0.00 0.00 0.00 2.10
1900 3794 7.810658 AGTAGATAATGCAAGAAAACACTGTG 58.189 34.615 6.19 6.19 0.00 3.66
2250 9606 2.202932 ACGCGCTCCATCCACATC 60.203 61.111 5.73 0.00 0.00 3.06
2273 9629 0.319555 TGCGAAGGAACCTTGAGTCG 60.320 55.000 11.02 9.23 36.26 4.18
2293 9650 7.672983 TCTTCCATAGCTTCAGTTTTAGTTG 57.327 36.000 0.00 0.00 0.00 3.16
2494 9882 4.097892 AGCCTGTGAAGAAAACGAACAAAT 59.902 37.500 0.00 0.00 0.00 2.32
2567 9955 0.526211 GGGGCGCAAAAGGAAACTAG 59.474 55.000 10.83 0.00 42.68 2.57
2593 9981 0.818040 ACCCACGACCTCAAAAGCAC 60.818 55.000 0.00 0.00 0.00 4.40
2634 10034 2.292267 CCACGAAGGATTGGATTCCAG 58.708 52.381 5.36 0.00 41.22 3.86
2681 10086 3.731216 CGGTAACATGACATCTCGATCAC 59.269 47.826 0.00 0.00 0.00 3.06
2772 14145 7.557358 ACAAAAGCACTATCATATCACCATCAA 59.443 33.333 0.00 0.00 0.00 2.57
2835 14208 4.452795 GGCAACTTCTAGTCCTTGAAAGAC 59.547 45.833 0.00 0.00 34.31 3.01
2877 14278 5.473066 AAAACTGACCCATGGATGAAAAG 57.527 39.130 15.22 4.39 0.00 2.27
2923 14324 2.417239 GGTACGACCATCGATGCAAAAA 59.583 45.455 20.25 2.03 43.74 1.94
2924 14325 2.004017 GGTACGACCATCGATGCAAAA 58.996 47.619 20.25 0.94 43.74 2.44
2925 14326 1.066787 TGGTACGACCATCGATGCAAA 60.067 47.619 20.25 0.22 44.79 3.68
2926 14327 0.533032 TGGTACGACCATCGATGCAA 59.467 50.000 20.25 0.00 44.79 4.08
2927 14328 2.194460 TGGTACGACCATCGATGCA 58.806 52.632 20.25 7.66 44.79 3.96
2971 14372 8.188139 CGTTTTGCCAGTATAATTAAAGTCCAT 58.812 33.333 0.00 0.00 0.00 3.41
2972 14373 7.362229 CCGTTTTGCCAGTATAATTAAAGTCCA 60.362 37.037 0.00 0.00 0.00 4.02
2973 14374 6.970613 CCGTTTTGCCAGTATAATTAAAGTCC 59.029 38.462 0.00 0.00 0.00 3.85
2974 14375 6.471198 GCCGTTTTGCCAGTATAATTAAAGTC 59.529 38.462 0.00 0.00 0.00 3.01
2975 14376 6.327154 GCCGTTTTGCCAGTATAATTAAAGT 58.673 36.000 0.00 0.00 0.00 2.66
2976 14377 6.806120 GCCGTTTTGCCAGTATAATTAAAG 57.194 37.500 0.00 0.00 0.00 1.85
2990 14391 1.291184 GCAATGGAAGGCCGTTTTGC 61.291 55.000 15.23 15.23 41.49 3.68
2991 14392 0.033228 TGCAATGGAAGGCCGTTTTG 59.967 50.000 0.00 1.33 41.49 2.44
2992 14393 0.755686 TTGCAATGGAAGGCCGTTTT 59.244 45.000 0.00 0.00 41.49 2.43
2993 14394 0.975887 ATTGCAATGGAAGGCCGTTT 59.024 45.000 12.09 0.00 41.49 3.60
2994 14395 0.247185 CATTGCAATGGAAGGCCGTT 59.753 50.000 28.34 0.00 44.26 4.44
2995 14396 1.892338 CATTGCAATGGAAGGCCGT 59.108 52.632 28.34 0.00 36.79 5.68
2996 14397 4.819082 CATTGCAATGGAAGGCCG 57.181 55.556 28.34 3.23 36.79 6.13
3032 14433 9.528018 CGTTTTGCTGGTATAATTAAAATCCAT 57.472 29.630 0.00 0.00 0.00 3.41
3033 14434 7.976734 CCGTTTTGCTGGTATAATTAAAATCCA 59.023 33.333 0.00 0.00 0.00 3.41
3034 14435 7.977293 ACCGTTTTGCTGGTATAATTAAAATCC 59.023 33.333 0.00 0.00 36.50 3.01
3035 14436 8.920509 ACCGTTTTGCTGGTATAATTAAAATC 57.079 30.769 0.00 0.00 36.50 2.17
3036 14437 9.361315 GAACCGTTTTGCTGGTATAATTAAAAT 57.639 29.630 0.00 0.00 37.54 1.82
3037 14438 8.358148 TGAACCGTTTTGCTGGTATAATTAAAA 58.642 29.630 0.00 0.00 37.54 1.52
3038 14439 7.883217 TGAACCGTTTTGCTGGTATAATTAAA 58.117 30.769 0.00 0.00 37.54 1.52
3039 14440 7.450124 TGAACCGTTTTGCTGGTATAATTAA 57.550 32.000 0.00 0.00 37.54 1.40
3040 14441 7.476667 CATGAACCGTTTTGCTGGTATAATTA 58.523 34.615 0.00 0.00 37.54 1.40
3041 14442 5.968528 TGAACCGTTTTGCTGGTATAATT 57.031 34.783 0.00 0.00 37.54 1.40
3042 14443 5.678616 GCATGAACCGTTTTGCTGGTATAAT 60.679 40.000 0.00 0.00 37.54 1.28
3043 14444 4.380023 GCATGAACCGTTTTGCTGGTATAA 60.380 41.667 0.00 0.00 37.54 0.98
3044 14445 3.127895 GCATGAACCGTTTTGCTGGTATA 59.872 43.478 0.00 0.00 37.54 1.47
3045 14446 2.094752 GCATGAACCGTTTTGCTGGTAT 60.095 45.455 0.00 0.00 37.54 2.73
3046 14447 1.268352 GCATGAACCGTTTTGCTGGTA 59.732 47.619 0.00 0.00 37.54 3.25
3047 14448 0.031994 GCATGAACCGTTTTGCTGGT 59.968 50.000 0.00 0.00 41.20 4.00
3048 14449 0.031857 TGCATGAACCGTTTTGCTGG 59.968 50.000 16.50 0.00 36.10 4.85
3049 14450 2.068837 ATGCATGAACCGTTTTGCTG 57.931 45.000 16.50 2.03 36.10 4.41
3050 14451 2.406130 CAATGCATGAACCGTTTTGCT 58.594 42.857 16.50 4.88 36.10 3.91
3051 14452 1.136280 GCAATGCATGAACCGTTTTGC 60.136 47.619 0.00 0.00 35.67 3.68
3052 14453 2.133553 TGCAATGCATGAACCGTTTTG 58.866 42.857 2.72 0.00 31.71 2.44
3053 14454 2.522836 TGCAATGCATGAACCGTTTT 57.477 40.000 2.72 0.00 31.71 2.43
3054 14455 2.522836 TTGCAATGCATGAACCGTTT 57.477 40.000 9.39 0.00 38.76 3.60
3055 14456 2.339418 CATTGCAATGCATGAACCGTT 58.661 42.857 25.50 0.00 38.76 4.44
3056 14457 1.404449 CCATTGCAATGCATGAACCGT 60.404 47.619 30.15 0.00 38.76 4.83
3057 14458 1.135053 TCCATTGCAATGCATGAACCG 60.135 47.619 30.15 15.88 38.76 4.44
3058 14459 2.676632 TCCATTGCAATGCATGAACC 57.323 45.000 30.15 0.00 38.76 3.62
3059 14460 3.852286 TCTTCCATTGCAATGCATGAAC 58.148 40.909 30.15 0.00 38.76 3.18
3060 14461 4.538746 TTCTTCCATTGCAATGCATGAA 57.461 36.364 30.15 25.45 38.76 2.57
3061 14462 4.538746 TTTCTTCCATTGCAATGCATGA 57.461 36.364 30.15 21.61 38.76 3.07
3062 14463 5.614923 TTTTTCTTCCATTGCAATGCATG 57.385 34.783 30.15 19.76 38.76 4.06
3083 14484 6.872585 TGGCCTTTGGAGATTATGATTTTT 57.127 33.333 3.32 0.00 0.00 1.94
3084 14485 6.612456 TCATGGCCTTTGGAGATTATGATTTT 59.388 34.615 3.32 0.00 0.00 1.82
3085 14486 6.041296 GTCATGGCCTTTGGAGATTATGATTT 59.959 38.462 3.32 0.00 0.00 2.17
3086 14487 5.537674 GTCATGGCCTTTGGAGATTATGATT 59.462 40.000 3.32 0.00 0.00 2.57
3087 14488 5.075493 GTCATGGCCTTTGGAGATTATGAT 58.925 41.667 3.32 0.00 0.00 2.45
3088 14489 4.464008 GTCATGGCCTTTGGAGATTATGA 58.536 43.478 3.32 0.00 0.00 2.15
3089 14490 3.571401 GGTCATGGCCTTTGGAGATTATG 59.429 47.826 9.76 0.00 0.00 1.90
3090 14491 3.748668 CGGTCATGGCCTTTGGAGATTAT 60.749 47.826 15.80 0.00 0.00 1.28
3091 14492 2.421388 CGGTCATGGCCTTTGGAGATTA 60.421 50.000 15.80 0.00 0.00 1.75
3092 14493 1.683011 CGGTCATGGCCTTTGGAGATT 60.683 52.381 15.80 0.00 0.00 2.40
3093 14494 0.107017 CGGTCATGGCCTTTGGAGAT 60.107 55.000 15.80 0.00 0.00 2.75
3094 14495 1.299648 CGGTCATGGCCTTTGGAGA 59.700 57.895 15.80 0.00 0.00 3.71
3095 14496 2.409870 GCGGTCATGGCCTTTGGAG 61.410 63.158 15.80 0.00 0.00 3.86
3096 14497 2.361104 GCGGTCATGGCCTTTGGA 60.361 61.111 15.80 0.00 0.00 3.53
3097 14498 1.606885 AATGCGGTCATGGCCTTTGG 61.607 55.000 15.80 0.00 32.23 3.28
3098 14499 0.247185 AAATGCGGTCATGGCCTTTG 59.753 50.000 15.80 0.00 32.23 2.77
3099 14500 0.975887 AAAATGCGGTCATGGCCTTT 59.024 45.000 15.80 5.46 32.23 3.11
3100 14501 0.247185 CAAAATGCGGTCATGGCCTT 59.753 50.000 15.80 0.00 32.23 4.35
3101 14502 1.892338 CAAAATGCGGTCATGGCCT 59.108 52.632 15.80 0.00 32.23 5.19
3102 14503 1.810853 GCAAAATGCGGTCATGGCC 60.811 57.895 6.17 6.17 31.71 5.36
3103 14504 3.784746 GCAAAATGCGGTCATGGC 58.215 55.556 0.00 0.00 31.71 4.40
3110 14511 6.933962 ATCTCAGTGATGTAGCAAAATGCGG 61.934 44.000 0.00 0.00 40.38 5.69
3111 14512 4.034858 ATCTCAGTGATGTAGCAAAATGCG 59.965 41.667 0.00 0.00 40.38 4.73
3112 14513 4.952262 TCTCAGTGATGTAGCAAAATGC 57.048 40.909 0.00 0.00 45.46 3.56
3124 14525 2.504585 AGTGATGGTGCATCTCAGTGAT 59.495 45.455 0.00 0.00 41.06 3.06
3125 14526 1.904537 AGTGATGGTGCATCTCAGTGA 59.095 47.619 0.00 0.00 41.06 3.41
3126 14527 2.093606 AGAGTGATGGTGCATCTCAGTG 60.094 50.000 10.34 0.00 41.06 3.66
3127 14528 2.168106 GAGAGTGATGGTGCATCTCAGT 59.832 50.000 0.00 2.47 41.06 3.41
3128 14529 2.167900 TGAGAGTGATGGTGCATCTCAG 59.832 50.000 9.33 0.00 40.98 3.35
3129 14530 2.181975 TGAGAGTGATGGTGCATCTCA 58.818 47.619 9.33 9.33 42.98 3.27
3130 14531 2.975732 TGAGAGTGATGGTGCATCTC 57.024 50.000 0.00 1.05 41.06 2.75
3131 14532 3.928005 AATGAGAGTGATGGTGCATCT 57.072 42.857 0.00 0.00 41.06 2.90
3132 14533 4.397103 TGAAAATGAGAGTGATGGTGCATC 59.603 41.667 0.00 0.00 40.88 3.91
3133 14534 4.338012 TGAAAATGAGAGTGATGGTGCAT 58.662 39.130 0.00 0.00 0.00 3.96
3134 14535 3.753815 TGAAAATGAGAGTGATGGTGCA 58.246 40.909 0.00 0.00 0.00 4.57
3135 14536 4.397103 TCATGAAAATGAGAGTGATGGTGC 59.603 41.667 0.00 0.00 0.00 5.01
3136 14537 6.694877 ATCATGAAAATGAGAGTGATGGTG 57.305 37.500 0.00 0.00 33.59 4.17
3137 14538 7.387122 CGATATCATGAAAATGAGAGTGATGGT 59.613 37.037 0.00 0.00 33.59 3.55
3138 14539 7.387122 ACGATATCATGAAAATGAGAGTGATGG 59.613 37.037 0.00 0.00 33.59 3.51
3139 14540 8.221766 CACGATATCATGAAAATGAGAGTGATG 58.778 37.037 0.00 0.00 33.59 3.07
3140 14541 8.146412 TCACGATATCATGAAAATGAGAGTGAT 58.854 33.333 0.00 0.00 33.26 3.06
3141 14542 7.491682 TCACGATATCATGAAAATGAGAGTGA 58.508 34.615 0.00 5.45 34.44 3.41
3142 14543 7.704789 TCACGATATCATGAAAATGAGAGTG 57.295 36.000 0.00 3.17 33.59 3.51
3143 14544 8.899427 ATTCACGATATCATGAAAATGAGAGT 57.101 30.769 17.30 0.00 38.29 3.24
3179 14580 9.480053 CACAAGTTTTAGAAAATGTCCATGATT 57.520 29.630 0.00 0.00 0.00 2.57
3180 14581 8.859090 TCACAAGTTTTAGAAAATGTCCATGAT 58.141 29.630 0.00 0.00 0.00 2.45
3181 14582 8.231692 TCACAAGTTTTAGAAAATGTCCATGA 57.768 30.769 0.00 0.00 0.00 3.07
3182 14583 8.755018 GTTCACAAGTTTTAGAAAATGTCCATG 58.245 33.333 0.00 0.00 0.00 3.66
3183 14584 8.474025 TGTTCACAAGTTTTAGAAAATGTCCAT 58.526 29.630 0.00 0.00 0.00 3.41
3184 14585 7.831753 TGTTCACAAGTTTTAGAAAATGTCCA 58.168 30.769 0.00 0.00 0.00 4.02
3185 14586 8.871686 ATGTTCACAAGTTTTAGAAAATGTCC 57.128 30.769 0.00 0.00 0.00 4.02
3257 14658 9.781633 TCATGAATTCAAAAATGTTCAGGATTT 57.218 25.926 13.09 0.00 36.74 2.17
3258 14659 9.781633 TTCATGAATTCAAAAATGTTCAGGATT 57.218 25.926 13.09 0.00 39.92 3.01
3259 14660 9.211485 GTTCATGAATTCAAAAATGTTCAGGAT 57.789 29.630 13.09 0.00 39.92 3.24
3260 14661 8.202811 TGTTCATGAATTCAAAAATGTTCAGGA 58.797 29.630 13.09 0.00 38.93 3.86
3261 14662 8.367943 TGTTCATGAATTCAAAAATGTTCAGG 57.632 30.769 13.09 0.00 34.45 3.86
3324 14725 9.744468 GCCTACTCAAGAAAAATGTTTTAGAAA 57.256 29.630 0.00 0.00 0.00 2.52
3325 14726 8.908903 TGCCTACTCAAGAAAAATGTTTTAGAA 58.091 29.630 0.00 0.00 0.00 2.10
3326 14727 8.458573 TGCCTACTCAAGAAAAATGTTTTAGA 57.541 30.769 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.