Multiple sequence alignment - TraesCS5D01G445500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G445500 chr5D 100.000 4081 0 0 1 4081 495786113 495782033 0.000000e+00 7537.0
1 TraesCS5D01G445500 chr5D 91.137 598 31 10 1648 2223 432159883 432159286 0.000000e+00 791.0
2 TraesCS5D01G445500 chr5D 93.023 344 20 2 2467 2807 432158623 432158281 2.190000e-137 499.0
3 TraesCS5D01G445500 chr5D 89.021 337 34 3 997 1331 495630894 495630559 8.160000e-112 414.0
4 TraesCS5D01G445500 chr5D 91.000 200 15 2 2268 2467 432158872 432158676 2.420000e-67 267.0
5 TraesCS5D01G445500 chr5D 86.580 231 24 3 2870 3097 495630226 495630000 8.760000e-62 248.0
6 TraesCS5D01G445500 chr5D 83.094 278 37 6 3208 3479 495749779 495749506 1.130000e-60 244.0
7 TraesCS5D01G445500 chr6D 98.730 1024 13 0 1444 2467 413374422 413375445 0.000000e+00 1820.0
8 TraesCS5D01G445500 chr6D 96.165 339 9 2 2467 2803 413375498 413375834 5.960000e-153 551.0
9 TraesCS5D01G445500 chr6D 87.500 64 4 4 3458 3519 230928118 230928057 2.040000e-08 71.3
10 TraesCS5D01G445500 chr2D 94.314 897 50 1 1572 2467 73227491 73226595 0.000000e+00 1373.0
11 TraesCS5D01G445500 chr2D 95.882 340 11 3 2467 2806 73226543 73226207 7.710000e-152 547.0
12 TraesCS5D01G445500 chr2D 85.217 345 36 8 3616 3956 298027368 298027701 1.400000e-89 340.0
13 TraesCS5D01G445500 chr2D 85.217 345 36 8 3616 3956 573688859 573688526 1.400000e-89 340.0
14 TraesCS5D01G445500 chr2D 84.638 345 38 8 3616 3956 57736257 57736590 3.040000e-86 329.0
15 TraesCS5D01G445500 chr2D 88.710 62 7 0 2201 2262 645963483 645963422 4.370000e-10 76.8
16 TraesCS5D01G445500 chr3B 92.645 775 30 3 1445 2197 79278499 79279268 0.000000e+00 1090.0
17 TraesCS5D01G445500 chr3B 94.343 654 36 1 1 653 187877390 187878043 0.000000e+00 1002.0
18 TraesCS5D01G445500 chr3B 93.731 654 39 2 1 653 506980656 506980004 0.000000e+00 979.0
19 TraesCS5D01G445500 chr3B 88.073 654 73 4 1 653 490788932 490789581 0.000000e+00 771.0
20 TraesCS5D01G445500 chr3B 95.821 335 10 2 2469 2803 79279542 79279872 4.640000e-149 538.0
21 TraesCS5D01G445500 chr3B 92.718 206 11 2 2264 2467 79279284 79279487 1.110000e-75 294.0
22 TraesCS5D01G445500 chr2B 92.387 775 37 10 1445 2197 624289446 624290220 0.000000e+00 1085.0
23 TraesCS5D01G445500 chr2B 86.397 272 26 6 2205 2467 624290170 624290439 1.860000e-73 287.0
24 TraesCS5D01G445500 chr2B 88.525 61 5 1 3461 3519 656332961 656333021 5.660000e-09 73.1
25 TraesCS5D01G445500 chr5B 91.850 773 44 13 1443 2197 617615476 617616247 0.000000e+00 1061.0
26 TraesCS5D01G445500 chr5B 81.839 870 111 25 3208 4067 612983118 612982286 0.000000e+00 688.0
27 TraesCS5D01G445500 chr5B 82.592 764 91 26 3201 3956 613085266 613084537 1.600000e-178 636.0
28 TraesCS5D01G445500 chr5B 92.744 441 19 9 1001 1434 613110766 613110332 3.460000e-175 625.0
29 TraesCS5D01G445500 chr5B 87.328 363 42 4 997 1358 612684919 612684560 2.940000e-111 412.0
30 TraesCS5D01G445500 chr5B 81.127 408 48 17 3208 3609 613109327 613108943 2.380000e-77 300.0
31 TraesCS5D01G445500 chr5B 92.233 206 12 2 2264 2467 617616263 617616466 5.160000e-74 289.0
32 TraesCS5D01G445500 chr5B 84.727 275 22 8 1190 1444 612983964 612983690 1.460000e-64 257.0
33 TraesCS5D01G445500 chr5B 85.965 228 28 1 2870 3097 612684248 612684025 1.470000e-59 241.0
34 TraesCS5D01G445500 chr5B 94.928 138 6 1 2866 3003 612983620 612983484 8.880000e-52 215.0
35 TraesCS5D01G445500 chr5B 91.935 62 2 3 3480 3540 566994381 566994440 2.610000e-12 84.2
36 TraesCS5D01G445500 chr5B 89.831 59 5 1 3467 3524 542752032 542752090 1.570000e-09 75.0
37 TraesCS5D01G445500 chr4D 94.697 660 31 4 2 660 218122457 218121801 0.000000e+00 1022.0
38 TraesCS5D01G445500 chr4D 94.071 624 34 3 1 622 218258283 218258905 0.000000e+00 944.0
39 TraesCS5D01G445500 chr4D 92.690 342 21 2 2467 2805 472214823 472214483 1.320000e-134 490.0
40 TraesCS5D01G445500 chr4D 84.527 349 35 11 3616 3956 506827413 506827750 1.090000e-85 327.0
41 TraesCS5D01G445500 chr3D 88.519 871 45 24 1648 2467 487120803 487121669 0.000000e+00 1003.0
42 TraesCS5D01G445500 chr3D 93.902 656 36 4 1 654 597168828 597168175 0.000000e+00 987.0
43 TraesCS5D01G445500 chr3D 84.682 346 36 10 3616 3956 601646093 601646426 3.040000e-86 329.0
44 TraesCS5D01G445500 chr3D 84.328 134 21 0 2909 3042 51734311 51734178 9.200000e-27 132.0
45 TraesCS5D01G445500 chr1D 94.351 655 30 6 1 653 206801937 206801288 0.000000e+00 998.0
46 TraesCS5D01G445500 chr1D 84.971 346 36 9 3616 3956 124376439 124376105 1.820000e-88 337.0
47 TraesCS5D01G445500 chr1D 84.928 345 37 8 3616 3956 16546809 16547142 6.540000e-88 335.0
48 TraesCS5D01G445500 chr1D 84.928 345 37 8 3616 3956 66590050 66590383 6.540000e-88 335.0
49 TraesCS5D01G445500 chr7A 94.055 656 36 3 1 654 293565 292911 0.000000e+00 992.0
50 TraesCS5D01G445500 chr7A 94.775 555 26 3 1440 1991 689318628 689318074 0.000000e+00 861.0
51 TraesCS5D01G445500 chr7A 94.955 337 17 0 2467 2803 689317895 689317559 2.790000e-146 529.0
52 TraesCS5D01G445500 chr6A 90.170 763 51 4 1435 2174 30140696 30139935 0.000000e+00 972.0
53 TraesCS5D01G445500 chr6A 93.043 345 20 4 2467 2811 30139658 30139318 6.090000e-138 501.0
54 TraesCS5D01G445500 chr6A 78.182 330 70 2 1001 1329 21707097 21706769 4.130000e-50 209.0
55 TraesCS5D01G445500 chr6A 94.000 50 3 0 3473 3522 478304835 478304786 4.370000e-10 76.8
56 TraesCS5D01G445500 chr5A 90.357 757 50 13 1441 2174 78470860 78470104 0.000000e+00 972.0
57 TraesCS5D01G445500 chr5A 95.009 561 24 3 2911 3467 619754002 619753442 0.000000e+00 878.0
58 TraesCS5D01G445500 chr5A 92.131 521 26 7 919 1434 619754714 619754204 0.000000e+00 721.0
59 TraesCS5D01G445500 chr5A 90.792 543 39 9 3539 4079 619727007 619726474 0.000000e+00 715.0
60 TraesCS5D01G445500 chr5A 94.659 337 16 2 2467 2803 78469827 78469493 4.670000e-144 521.0
61 TraesCS5D01G445500 chr5A 89.005 382 35 6 997 1376 619694641 619694265 2.220000e-127 466.0
62 TraesCS5D01G445500 chr5A 91.509 212 17 1 2870 3081 619720137 619719927 1.440000e-74 291.0
63 TraesCS5D01G445500 chr5A 86.090 266 26 5 1190 1444 619722082 619721817 4.020000e-70 276.0
64 TraesCS5D01G445500 chr5A 87.826 230 22 3 2870 3097 619693961 619693736 8.700000e-67 265.0
65 TraesCS5D01G445500 chr5A 80.268 299 40 11 3208 3501 619719446 619719162 1.490000e-49 207.0
66 TraesCS5D01G445500 chr5A 98.649 74 1 0 844 917 619755045 619754972 9.200000e-27 132.0
67 TraesCS5D01G445500 chr4A 93.558 652 38 4 4 654 16042712 16042064 0.000000e+00 968.0
68 TraesCS5D01G445500 chr4A 94.000 50 3 0 3472 3521 631951050 631951001 4.370000e-10 76.8
69 TraesCS5D01G445500 chr4A 92.453 53 3 1 3467 3519 735774132 735774081 1.570000e-09 75.0
70 TraesCS5D01G445500 chr2A 90.053 754 52 3 1443 2174 711661911 711661159 0.000000e+00 955.0
71 TraesCS5D01G445500 chr2A 94.428 341 18 1 2467 2806 711660894 711660554 1.300000e-144 523.0
72 TraesCS5D01G445500 chr2A 88.725 204 16 3 2264 2467 711661143 711660947 4.080000e-60 243.0
73 TraesCS5D01G445500 chr2A 87.719 57 7 0 2206 2262 771777670 771777614 2.630000e-07 67.6
74 TraesCS5D01G445500 chr7D 91.613 620 30 2 1648 2245 16699829 16700448 0.000000e+00 837.0
75 TraesCS5D01G445500 chr7D 85.217 345 36 8 3616 3956 27640287 27639954 1.400000e-89 340.0
76 TraesCS5D01G445500 chr7D 84.638 345 37 9 3616 3956 90996903 90997235 3.040000e-86 329.0
77 TraesCS5D01G445500 chr7D 84.638 345 38 8 3616 3956 361508261 361508594 3.040000e-86 329.0
78 TraesCS5D01G445500 chr7D 84.638 345 38 8 3616 3956 606517727 606518060 3.040000e-86 329.0
79 TraesCS5D01G445500 chrUn 85.217 345 36 8 3616 3956 361706441 361706108 1.400000e-89 340.0
80 TraesCS5D01G445500 chr7B 95.918 49 1 1 3471 3519 648271697 648271744 1.220000e-10 78.7
81 TraesCS5D01G445500 chr6B 95.745 47 2 0 2418 2464 696124044 696124090 4.370000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G445500 chr5D 495782033 495786113 4080 True 7537.000000 7537 100.000000 1 4081 1 chr5D.!!$R2 4080
1 TraesCS5D01G445500 chr5D 432158281 432159883 1602 True 519.000000 791 91.720000 1648 2807 3 chr5D.!!$R3 1159
2 TraesCS5D01G445500 chr5D 495630000 495630894 894 True 331.000000 414 87.800500 997 3097 2 chr5D.!!$R4 2100
3 TraesCS5D01G445500 chr6D 413374422 413375834 1412 False 1185.500000 1820 97.447500 1444 2803 2 chr6D.!!$F1 1359
4 TraesCS5D01G445500 chr2D 73226207 73227491 1284 True 960.000000 1373 95.098000 1572 2806 2 chr2D.!!$R3 1234
5 TraesCS5D01G445500 chr3B 187877390 187878043 653 False 1002.000000 1002 94.343000 1 653 1 chr3B.!!$F1 652
6 TraesCS5D01G445500 chr3B 506980004 506980656 652 True 979.000000 979 93.731000 1 653 1 chr3B.!!$R1 652
7 TraesCS5D01G445500 chr3B 490788932 490789581 649 False 771.000000 771 88.073000 1 653 1 chr3B.!!$F2 652
8 TraesCS5D01G445500 chr3B 79278499 79279872 1373 False 640.666667 1090 93.728000 1445 2803 3 chr3B.!!$F3 1358
9 TraesCS5D01G445500 chr2B 624289446 624290439 993 False 686.000000 1085 89.392000 1445 2467 2 chr2B.!!$F2 1022
10 TraesCS5D01G445500 chr5B 617615476 617616466 990 False 675.000000 1061 92.041500 1443 2467 2 chr5B.!!$F3 1024
11 TraesCS5D01G445500 chr5B 613084537 613085266 729 True 636.000000 636 82.592000 3201 3956 1 chr5B.!!$R1 755
12 TraesCS5D01G445500 chr5B 613108943 613110766 1823 True 462.500000 625 86.935500 1001 3609 2 chr5B.!!$R4 2608
13 TraesCS5D01G445500 chr5B 612982286 612983964 1678 True 386.666667 688 87.164667 1190 4067 3 chr5B.!!$R3 2877
14 TraesCS5D01G445500 chr5B 612684025 612684919 894 True 326.500000 412 86.646500 997 3097 2 chr5B.!!$R2 2100
15 TraesCS5D01G445500 chr4D 218121801 218122457 656 True 1022.000000 1022 94.697000 2 660 1 chr4D.!!$R1 658
16 TraesCS5D01G445500 chr4D 218258283 218258905 622 False 944.000000 944 94.071000 1 622 1 chr4D.!!$F1 621
17 TraesCS5D01G445500 chr3D 487120803 487121669 866 False 1003.000000 1003 88.519000 1648 2467 1 chr3D.!!$F1 819
18 TraesCS5D01G445500 chr3D 597168175 597168828 653 True 987.000000 987 93.902000 1 654 1 chr3D.!!$R2 653
19 TraesCS5D01G445500 chr1D 206801288 206801937 649 True 998.000000 998 94.351000 1 653 1 chr1D.!!$R2 652
20 TraesCS5D01G445500 chr7A 292911 293565 654 True 992.000000 992 94.055000 1 654 1 chr7A.!!$R1 653
21 TraesCS5D01G445500 chr7A 689317559 689318628 1069 True 695.000000 861 94.865000 1440 2803 2 chr7A.!!$R2 1363
22 TraesCS5D01G445500 chr6A 30139318 30140696 1378 True 736.500000 972 91.606500 1435 2811 2 chr6A.!!$R3 1376
23 TraesCS5D01G445500 chr5A 78469493 78470860 1367 True 746.500000 972 92.508000 1441 2803 2 chr5A.!!$R2 1362
24 TraesCS5D01G445500 chr5A 619726474 619727007 533 True 715.000000 715 90.792000 3539 4079 1 chr5A.!!$R1 540
25 TraesCS5D01G445500 chr5A 619753442 619755045 1603 True 577.000000 878 95.263000 844 3467 3 chr5A.!!$R5 2623
26 TraesCS5D01G445500 chr5A 619693736 619694641 905 True 365.500000 466 88.415500 997 3097 2 chr5A.!!$R3 2100
27 TraesCS5D01G445500 chr5A 619719162 619722082 2920 True 258.000000 291 85.955667 1190 3501 3 chr5A.!!$R4 2311
28 TraesCS5D01G445500 chr4A 16042064 16042712 648 True 968.000000 968 93.558000 4 654 1 chr4A.!!$R1 650
29 TraesCS5D01G445500 chr2A 711660554 711661911 1357 True 573.666667 955 91.068667 1443 2806 3 chr2A.!!$R2 1363
30 TraesCS5D01G445500 chr7D 16699829 16700448 619 False 837.000000 837 91.613000 1648 2245 1 chr7D.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 817 0.036875 CCTCACCTGTCAACTTCCCC 59.963 60.0 0.0 0.0 0.00 4.81 F
838 843 0.257328 TTGGAAACAGCCCAGTGACA 59.743 50.0 0.0 0.0 44.54 3.58 F
839 844 0.478072 TGGAAACAGCCCAGTGACAT 59.522 50.0 0.0 0.0 35.01 3.06 F
1734 2053 0.898326 TCTAAGGTGAGCCGCAGTCA 60.898 55.0 0.0 0.0 40.50 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2389 1.209504 GTTCCCATCTTCGATCCCACA 59.790 52.381 0.00 0.0 0.0 4.17 R
2312 3033 1.531602 GCTGTTCCCTTGGGTTGCT 60.532 57.895 5.51 0.0 0.0 3.91 R
2829 3639 5.063438 GCGATTTATGTGCTAGTGACTGAAA 59.937 40.000 0.00 0.0 0.0 2.69 R
3472 6715 0.113776 ACGGAGGGAGTAGGACACAA 59.886 55.000 0.00 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 2.288666 TGAACAAGTTCAGTGTCCAGC 58.711 47.619 11.34 0.00 43.90 4.85
41 43 2.717639 ACAAGTTCAGTGTCCAGCTT 57.282 45.000 0.00 0.00 0.00 3.74
272 274 0.608640 GAGACTTGACCACGTCCCAT 59.391 55.000 3.45 0.00 30.77 4.00
353 356 7.765307 CACTGGATGCAACAATCTTTTAGTAT 58.235 34.615 0.00 0.00 0.00 2.12
390 393 1.143838 TGGTGCAGGCGCTACATAG 59.856 57.895 7.64 0.00 39.64 2.23
407 411 5.263968 ACATAGTAATGAAGGACACTCGG 57.736 43.478 0.00 0.00 36.54 4.63
488 492 6.821665 GGCTGTGGTAGAACATTGTATTAGAA 59.178 38.462 0.00 0.00 0.00 2.10
542 546 3.818787 GCGGTGCCAATGCTCCTG 61.819 66.667 4.39 0.24 46.64 3.86
610 615 5.356190 AGCTGATGATGTAAGTGTCATTTGG 59.644 40.000 0.00 0.00 35.33 3.28
631 636 8.596781 TTTGGGTTTTAATAAAGCTAGCCATA 57.403 30.769 12.13 5.25 40.66 2.74
636 641 8.638873 GGTTTTAATAAAGCTAGCCATAATGGT 58.361 33.333 12.13 0.00 37.98 3.55
645 650 3.366052 AGCCATAATGGTCTTTCCGTT 57.634 42.857 0.00 0.00 46.12 4.44
667 672 2.207580 AAAAACAGCCACCACCACC 58.792 52.632 0.00 0.00 0.00 4.61
668 673 1.334384 AAAAACAGCCACCACCACCC 61.334 55.000 0.00 0.00 0.00 4.61
669 674 2.522198 AAAACAGCCACCACCACCCA 62.522 55.000 0.00 0.00 0.00 4.51
670 675 2.522198 AAACAGCCACCACCACCCAA 62.522 55.000 0.00 0.00 0.00 4.12
671 676 2.912025 CAGCCACCACCACCCAAC 60.912 66.667 0.00 0.00 0.00 3.77
672 677 4.218686 AGCCACCACCACCCAACC 62.219 66.667 0.00 0.00 0.00 3.77
675 680 4.885270 CACCACCACCCAACCGCA 62.885 66.667 0.00 0.00 0.00 5.69
676 681 4.130554 ACCACCACCCAACCGCAA 62.131 61.111 0.00 0.00 0.00 4.85
677 682 2.600173 CCACCACCCAACCGCAAT 60.600 61.111 0.00 0.00 0.00 3.56
678 683 2.206536 CCACCACCCAACCGCAATT 61.207 57.895 0.00 0.00 0.00 2.32
679 684 0.896019 CCACCACCCAACCGCAATTA 60.896 55.000 0.00 0.00 0.00 1.40
680 685 0.962489 CACCACCCAACCGCAATTAA 59.038 50.000 0.00 0.00 0.00 1.40
681 686 1.341531 CACCACCCAACCGCAATTAAA 59.658 47.619 0.00 0.00 0.00 1.52
682 687 1.616374 ACCACCCAACCGCAATTAAAG 59.384 47.619 0.00 0.00 0.00 1.85
683 688 1.616374 CCACCCAACCGCAATTAAAGT 59.384 47.619 0.00 0.00 0.00 2.66
684 689 2.352323 CCACCCAACCGCAATTAAAGTC 60.352 50.000 0.00 0.00 0.00 3.01
685 690 1.890489 ACCCAACCGCAATTAAAGTCC 59.110 47.619 0.00 0.00 0.00 3.85
686 691 1.135517 CCCAACCGCAATTAAAGTCCG 60.136 52.381 0.00 0.00 0.00 4.79
687 692 1.613270 CAACCGCAATTAAAGTCCGC 58.387 50.000 0.00 0.00 0.00 5.54
688 693 0.524414 AACCGCAATTAAAGTCCGCC 59.476 50.000 0.00 0.00 0.00 6.13
689 694 1.061887 CCGCAATTAAAGTCCGCCG 59.938 57.895 0.00 0.00 0.00 6.46
690 695 1.582680 CGCAATTAAAGTCCGCCGC 60.583 57.895 0.00 0.00 0.00 6.53
691 696 1.504446 GCAATTAAAGTCCGCCGCA 59.496 52.632 0.00 0.00 0.00 5.69
692 697 0.796870 GCAATTAAAGTCCGCCGCAC 60.797 55.000 0.00 0.00 0.00 5.34
693 698 0.802494 CAATTAAAGTCCGCCGCACT 59.198 50.000 0.00 0.00 0.00 4.40
694 699 0.802494 AATTAAAGTCCGCCGCACTG 59.198 50.000 0.00 0.00 0.00 3.66
695 700 1.644786 ATTAAAGTCCGCCGCACTGC 61.645 55.000 0.00 0.00 0.00 4.40
696 701 2.725203 TTAAAGTCCGCCGCACTGCT 62.725 55.000 0.00 0.00 0.00 4.24
707 712 3.289834 CACTGCTGCCACACCCAC 61.290 66.667 0.00 0.00 0.00 4.61
708 713 4.586235 ACTGCTGCCACACCCACC 62.586 66.667 0.00 0.00 0.00 4.61
709 714 4.584518 CTGCTGCCACACCCACCA 62.585 66.667 0.00 0.00 0.00 4.17
710 715 4.892965 TGCTGCCACACCCACCAC 62.893 66.667 0.00 0.00 0.00 4.16
735 740 3.680786 CTGACCACCGTCGCCAGA 61.681 66.667 0.00 0.00 42.37 3.86
736 741 3.633094 CTGACCACCGTCGCCAGAG 62.633 68.421 0.00 0.00 42.37 3.35
737 742 3.681835 GACCACCGTCGCCAGAGT 61.682 66.667 0.00 0.00 0.00 3.24
738 743 3.222354 GACCACCGTCGCCAGAGTT 62.222 63.158 0.00 0.00 0.00 3.01
739 744 2.030562 CCACCGTCGCCAGAGTTT 59.969 61.111 0.00 0.00 0.00 2.66
740 745 1.290955 CCACCGTCGCCAGAGTTTA 59.709 57.895 0.00 0.00 0.00 2.01
741 746 1.012486 CCACCGTCGCCAGAGTTTAC 61.012 60.000 0.00 0.00 0.00 2.01
742 747 1.012486 CACCGTCGCCAGAGTTTACC 61.012 60.000 0.00 0.00 0.00 2.85
743 748 1.804326 CCGTCGCCAGAGTTTACCG 60.804 63.158 0.00 0.00 0.00 4.02
744 749 1.080974 CGTCGCCAGAGTTTACCGT 60.081 57.895 0.00 0.00 0.00 4.83
745 750 1.342082 CGTCGCCAGAGTTTACCGTG 61.342 60.000 0.00 0.00 0.00 4.94
746 751 1.012486 GTCGCCAGAGTTTACCGTGG 61.012 60.000 0.00 0.00 0.00 4.94
748 753 4.296265 CCAGAGTTTACCGTGGCC 57.704 61.111 0.00 0.00 0.00 5.36
749 754 1.677552 CCAGAGTTTACCGTGGCCT 59.322 57.895 3.32 0.00 0.00 5.19
750 755 0.899720 CCAGAGTTTACCGTGGCCTA 59.100 55.000 3.32 0.00 0.00 3.93
751 756 1.405121 CCAGAGTTTACCGTGGCCTAC 60.405 57.143 3.32 0.00 0.00 3.18
752 757 0.900421 AGAGTTTACCGTGGCCTACC 59.100 55.000 3.32 0.00 0.00 3.18
753 758 0.609662 GAGTTTACCGTGGCCTACCA 59.390 55.000 3.32 0.00 46.51 3.25
767 772 6.339587 TGGCCTACCAAAATTCACTTTTAG 57.660 37.500 3.32 0.00 45.37 1.85
768 773 5.245075 TGGCCTACCAAAATTCACTTTTAGG 59.755 40.000 3.32 0.00 45.37 2.69
769 774 5.337250 GGCCTACCAAAATTCACTTTTAGGG 60.337 44.000 0.00 0.00 35.27 3.53
770 775 5.337250 GCCTACCAAAATTCACTTTTAGGGG 60.337 44.000 0.00 0.00 35.27 4.79
771 776 6.014012 CCTACCAAAATTCACTTTTAGGGGA 58.986 40.000 0.00 0.00 35.27 4.81
772 777 6.667848 CCTACCAAAATTCACTTTTAGGGGAT 59.332 38.462 0.00 0.00 35.27 3.85
773 778 6.605471 ACCAAAATTCACTTTTAGGGGATC 57.395 37.500 0.00 0.00 35.27 3.36
774 779 6.322931 ACCAAAATTCACTTTTAGGGGATCT 58.677 36.000 0.00 0.00 35.27 2.75
775 780 7.475299 ACCAAAATTCACTTTTAGGGGATCTA 58.525 34.615 0.00 0.00 35.27 1.98
776 781 7.396339 ACCAAAATTCACTTTTAGGGGATCTAC 59.604 37.037 0.00 0.00 35.27 2.59
777 782 7.415206 CCAAAATTCACTTTTAGGGGATCTACG 60.415 40.741 0.00 0.00 35.27 3.51
778 783 5.952347 ATTCACTTTTAGGGGATCTACGT 57.048 39.130 0.00 0.00 0.00 3.57
779 784 4.730949 TCACTTTTAGGGGATCTACGTG 57.269 45.455 0.00 0.00 0.00 4.49
780 785 4.346730 TCACTTTTAGGGGATCTACGTGA 58.653 43.478 0.00 0.00 32.40 4.35
781 786 4.773674 TCACTTTTAGGGGATCTACGTGAA 59.226 41.667 0.00 0.00 32.15 3.18
782 787 4.868734 CACTTTTAGGGGATCTACGTGAAC 59.131 45.833 0.00 0.00 0.00 3.18
783 788 4.529377 ACTTTTAGGGGATCTACGTGAACA 59.471 41.667 0.00 0.00 0.00 3.18
784 789 5.012354 ACTTTTAGGGGATCTACGTGAACAA 59.988 40.000 0.00 0.00 0.00 2.83
785 790 4.730949 TTAGGGGATCTACGTGAACAAG 57.269 45.455 0.00 0.00 0.00 3.16
786 791 1.831736 AGGGGATCTACGTGAACAAGG 59.168 52.381 0.00 0.00 0.00 3.61
787 792 1.829222 GGGGATCTACGTGAACAAGGA 59.171 52.381 0.00 0.00 0.00 3.36
788 793 2.235402 GGGGATCTACGTGAACAAGGAA 59.765 50.000 0.00 0.00 0.00 3.36
789 794 3.307199 GGGGATCTACGTGAACAAGGAAA 60.307 47.826 0.00 0.00 0.00 3.13
790 795 4.320870 GGGATCTACGTGAACAAGGAAAA 58.679 43.478 0.00 0.00 0.00 2.29
791 796 4.153655 GGGATCTACGTGAACAAGGAAAAC 59.846 45.833 0.00 0.00 0.00 2.43
792 797 4.753107 GGATCTACGTGAACAAGGAAAACA 59.247 41.667 0.00 0.00 0.00 2.83
793 798 5.333875 GGATCTACGTGAACAAGGAAAACAC 60.334 44.000 0.00 0.00 0.00 3.32
794 799 3.872771 TCTACGTGAACAAGGAAAACACC 59.127 43.478 0.00 0.00 0.00 4.16
795 800 2.718563 ACGTGAACAAGGAAAACACCT 58.281 42.857 0.00 0.00 42.69 4.00
796 801 2.681344 ACGTGAACAAGGAAAACACCTC 59.319 45.455 0.00 0.00 39.62 3.85
797 802 2.680841 CGTGAACAAGGAAAACACCTCA 59.319 45.455 0.00 0.00 39.62 3.86
798 803 3.486875 CGTGAACAAGGAAAACACCTCAC 60.487 47.826 0.00 0.00 39.62 3.51
799 804 3.020984 TGAACAAGGAAAACACCTCACC 58.979 45.455 0.00 0.00 39.62 4.02
800 805 3.288092 GAACAAGGAAAACACCTCACCT 58.712 45.455 0.00 0.00 39.62 4.00
801 806 2.654863 ACAAGGAAAACACCTCACCTG 58.345 47.619 0.00 0.00 39.62 4.00
802 807 2.025321 ACAAGGAAAACACCTCACCTGT 60.025 45.455 0.00 0.00 39.62 4.00
803 808 2.618709 CAAGGAAAACACCTCACCTGTC 59.381 50.000 0.00 0.00 39.62 3.51
804 809 1.843851 AGGAAAACACCTCACCTGTCA 59.156 47.619 0.00 0.00 34.98 3.58
805 810 2.241176 AGGAAAACACCTCACCTGTCAA 59.759 45.455 0.00 0.00 34.98 3.18
806 811 2.357952 GGAAAACACCTCACCTGTCAAC 59.642 50.000 0.00 0.00 0.00 3.18
807 812 3.279434 GAAAACACCTCACCTGTCAACT 58.721 45.455 0.00 0.00 0.00 3.16
808 813 3.366052 AAACACCTCACCTGTCAACTT 57.634 42.857 0.00 0.00 0.00 2.66
809 814 2.622064 ACACCTCACCTGTCAACTTC 57.378 50.000 0.00 0.00 0.00 3.01
810 815 1.141053 ACACCTCACCTGTCAACTTCC 59.859 52.381 0.00 0.00 0.00 3.46
811 816 0.765510 ACCTCACCTGTCAACTTCCC 59.234 55.000 0.00 0.00 0.00 3.97
812 817 0.036875 CCTCACCTGTCAACTTCCCC 59.963 60.000 0.00 0.00 0.00 4.81
813 818 1.059913 CTCACCTGTCAACTTCCCCT 58.940 55.000 0.00 0.00 0.00 4.79
814 819 2.257207 CTCACCTGTCAACTTCCCCTA 58.743 52.381 0.00 0.00 0.00 3.53
815 820 2.637872 CTCACCTGTCAACTTCCCCTAA 59.362 50.000 0.00 0.00 0.00 2.69
816 821 3.050089 TCACCTGTCAACTTCCCCTAAA 58.950 45.455 0.00 0.00 0.00 1.85
817 822 3.655777 TCACCTGTCAACTTCCCCTAAAT 59.344 43.478 0.00 0.00 0.00 1.40
818 823 4.105697 TCACCTGTCAACTTCCCCTAAATT 59.894 41.667 0.00 0.00 0.00 1.82
819 824 4.832823 CACCTGTCAACTTCCCCTAAATTT 59.167 41.667 0.00 0.00 0.00 1.82
820 825 5.304357 CACCTGTCAACTTCCCCTAAATTTT 59.696 40.000 0.00 0.00 0.00 1.82
821 826 5.304357 ACCTGTCAACTTCCCCTAAATTTTG 59.696 40.000 0.00 0.00 0.00 2.44
822 827 5.279456 CCTGTCAACTTCCCCTAAATTTTGG 60.279 44.000 11.28 11.28 0.00 3.28
823 828 5.459505 TGTCAACTTCCCCTAAATTTTGGA 58.540 37.500 18.77 9.47 0.00 3.53
824 829 5.900123 TGTCAACTTCCCCTAAATTTTGGAA 59.100 36.000 18.77 15.42 35.64 3.53
825 830 6.384305 TGTCAACTTCCCCTAAATTTTGGAAA 59.616 34.615 18.77 11.68 36.50 3.13
826 831 6.704493 GTCAACTTCCCCTAAATTTTGGAAAC 59.296 38.462 18.77 9.37 36.50 2.78
827 832 6.384305 TCAACTTCCCCTAAATTTTGGAAACA 59.616 34.615 18.77 1.09 36.50 2.83
828 833 6.419484 ACTTCCCCTAAATTTTGGAAACAG 57.581 37.500 18.77 11.28 44.54 3.16
829 834 4.882842 TCCCCTAAATTTTGGAAACAGC 57.117 40.909 18.77 0.00 44.54 4.40
830 835 3.580895 TCCCCTAAATTTTGGAAACAGCC 59.419 43.478 18.77 0.00 44.54 4.85
831 836 3.307410 CCCCTAAATTTTGGAAACAGCCC 60.307 47.826 18.77 0.00 44.54 5.19
832 837 3.326297 CCCTAAATTTTGGAAACAGCCCA 59.674 43.478 18.77 0.00 44.54 5.36
833 838 4.563374 CCCTAAATTTTGGAAACAGCCCAG 60.563 45.833 18.77 0.00 44.54 4.45
834 839 4.040339 CCTAAATTTTGGAAACAGCCCAGT 59.960 41.667 12.74 0.00 44.54 4.00
835 840 3.473923 AATTTTGGAAACAGCCCAGTG 57.526 42.857 0.00 0.00 44.54 3.66
836 841 2.151502 TTTTGGAAACAGCCCAGTGA 57.848 45.000 0.00 0.00 44.54 3.41
837 842 1.398692 TTTGGAAACAGCCCAGTGAC 58.601 50.000 0.00 0.00 44.54 3.67
838 843 0.257328 TTGGAAACAGCCCAGTGACA 59.743 50.000 0.00 0.00 44.54 3.58
839 844 0.478072 TGGAAACAGCCCAGTGACAT 59.522 50.000 0.00 0.00 35.01 3.06
840 845 1.133513 TGGAAACAGCCCAGTGACATT 60.134 47.619 0.00 0.00 35.01 2.71
841 846 1.963515 GGAAACAGCCCAGTGACATTT 59.036 47.619 0.00 0.00 0.00 2.32
842 847 2.029918 GGAAACAGCCCAGTGACATTTC 60.030 50.000 0.00 0.00 0.00 2.17
852 857 5.170748 CCCAGTGACATTTCCTTTTATTGC 58.829 41.667 0.00 0.00 0.00 3.56
917 922 7.768120 TGCAAAATACTTGTCCTTTTTCATGTT 59.232 29.630 0.00 0.00 0.00 2.71
949 1210 2.455557 AGCATATCTGATCCCCTCTCG 58.544 52.381 0.00 0.00 0.00 4.04
972 1233 4.602340 AGTCAACAAATCGACCTACACT 57.398 40.909 0.00 0.00 32.33 3.55
973 1234 5.717078 AGTCAACAAATCGACCTACACTA 57.283 39.130 0.00 0.00 32.33 2.74
974 1235 5.467705 AGTCAACAAATCGACCTACACTAC 58.532 41.667 0.00 0.00 32.33 2.73
975 1236 5.010314 AGTCAACAAATCGACCTACACTACA 59.990 40.000 0.00 0.00 32.33 2.74
976 1237 5.118203 GTCAACAAATCGACCTACACTACAC 59.882 44.000 0.00 0.00 0.00 2.90
983 1244 1.471684 GACCTACACTACACCACCTCG 59.528 57.143 0.00 0.00 0.00 4.63
1338 1607 1.520787 CATGGTAACCCTCGTCCGC 60.521 63.158 0.00 0.00 0.00 5.54
1358 1631 2.901813 CAGCCTCCCTCTGCTCTG 59.098 66.667 0.00 0.00 35.12 3.35
1400 1698 3.258228 ATGTGCCGCCTCTGCTTCA 62.258 57.895 0.00 0.00 34.43 3.02
1503 1822 6.350110 CGTTCATTTTATGTGATTGGAGGGTT 60.350 38.462 0.00 0.00 0.00 4.11
1654 1973 7.648039 ATTTAGATTGAGTACGAGTCTCCTT 57.352 36.000 0.00 0.00 0.00 3.36
1734 2053 0.898326 TCTAAGGTGAGCCGCAGTCA 60.898 55.000 0.00 0.00 40.50 3.41
2326 3047 1.360393 ACTCCAGCAACCCAAGGGAA 61.360 55.000 13.15 0.00 38.96 3.97
2387 3108 2.359975 GCAAGGGGGTTCACGGAG 60.360 66.667 0.00 0.00 0.00 4.63
2819 3629 6.817765 AACTCTCAAAGTTTTTCAGTGTCA 57.182 33.333 0.00 0.00 46.26 3.58
2829 3639 7.281040 AGTTTTTCAGTGTCATGTCATCAAT 57.719 32.000 0.00 0.00 0.00 2.57
2852 3662 6.647212 TTTCAGTCACTAGCACATAAATCG 57.353 37.500 0.00 0.00 0.00 3.34
2864 3674 3.249320 CACATAAATCGCTCTGTGATGGG 59.751 47.826 0.00 0.00 41.11 4.00
2883 5325 2.887152 GGGCCGCATTATCTTGATTTCT 59.113 45.455 0.00 0.00 0.00 2.52
3081 5534 2.303175 CTCGGAAGAAGAGGGTCTAGG 58.697 57.143 0.00 0.00 41.32 3.02
3099 5552 3.317603 AGGTTGAATTTGCATTTCGGG 57.682 42.857 0.00 0.00 0.00 5.14
3101 5554 3.829601 AGGTTGAATTTGCATTTCGGGTA 59.170 39.130 0.00 0.00 0.00 3.69
3105 5558 4.804108 TGAATTTGCATTTCGGGTACTTG 58.196 39.130 0.00 0.00 0.00 3.16
3106 5559 3.866883 ATTTGCATTTCGGGTACTTGG 57.133 42.857 0.00 0.00 0.00 3.61
3114 5567 3.328382 TTCGGGTACTTGGTGAAGATG 57.672 47.619 0.00 0.00 32.98 2.90
3136 5589 5.670485 TGTTCAAGTGTCACAAGATGTACT 58.330 37.500 5.62 0.00 0.00 2.73
3142 5595 8.367911 TCAAGTGTCACAAGATGTACTAAGATT 58.632 33.333 5.62 0.00 0.00 2.40
3153 5622 8.034058 AGATGTACTAAGATTTGTTGAACAGC 57.966 34.615 0.00 0.00 0.00 4.40
3190 5659 6.852853 GCATATCATTCCAACGACTATGTTTG 59.147 38.462 0.00 0.00 0.00 2.93
3230 6467 8.233868 CCTAGATATCACTCTCACAATCTAACG 58.766 40.741 5.32 0.00 0.00 3.18
3291 6528 2.104622 TGACACTCAATGGCAACTCAGA 59.895 45.455 0.00 0.00 46.33 3.27
3293 6530 4.020307 TGACACTCAATGGCAACTCAGATA 60.020 41.667 0.00 0.00 46.33 1.98
3377 6620 1.441732 AAACTGGCAAACGTCCGACC 61.442 55.000 0.00 0.00 0.00 4.79
3381 6624 1.595929 GGCAAACGTCCGACCAAGA 60.596 57.895 0.00 0.00 0.00 3.02
3462 6705 7.102346 GGTACTATCATCAAGCAGCTCATAAT 58.898 38.462 0.00 0.00 0.00 1.28
3472 6715 9.736414 ATCAAGCAGCTCATAATTACTGATTAT 57.264 29.630 0.00 0.00 40.72 1.28
3498 6741 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
3501 6744 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3502 6745 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3503 6746 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3504 6747 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3506 6749 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3508 6751 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3509 6752 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3510 6753 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3511 6754 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3513 6756 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3514 6757 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3515 6758 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
3560 6803 7.012894 CACCCACACAACTTCAGACTATTTAAA 59.987 37.037 0.00 0.00 0.00 1.52
3561 6804 7.228706 ACCCACACAACTTCAGACTATTTAAAG 59.771 37.037 0.00 0.00 0.00 1.85
3593 6837 1.553248 AGTGGCTGGCGACTGTAAATA 59.447 47.619 9.29 0.00 33.81 1.40
3648 6895 6.259829 GGAAATCTGCTATGGAGAGAACTTTC 59.740 42.308 0.00 0.00 0.00 2.62
3655 6902 5.517054 GCTATGGAGAGAACTTTCTGTTACG 59.483 44.000 0.00 0.00 39.30 3.18
3656 6903 4.931661 TGGAGAGAACTTTCTGTTACGT 57.068 40.909 0.00 0.00 39.30 3.57
3671 6918 5.716228 TCTGTTACGTGTTTTATAGGAGGGA 59.284 40.000 0.00 0.00 0.00 4.20
3672 6919 6.211184 TCTGTTACGTGTTTTATAGGAGGGAA 59.789 38.462 0.00 0.00 0.00 3.97
3717 6968 3.201290 ACATACTATCAGCAGCAGCAAC 58.799 45.455 3.17 0.00 45.49 4.17
3732 6983 2.032550 CAGCAACACCAACTGACTCTTG 59.967 50.000 0.00 0.00 33.10 3.02
3821 7072 5.179555 AGTGCAAAGTCTAATCTCGGAAAAC 59.820 40.000 0.00 0.00 0.00 2.43
3826 7077 7.758528 GCAAAGTCTAATCTCGGAAAACTACTA 59.241 37.037 0.00 0.00 0.00 1.82
3869 7120 3.055891 AGCATTTTACCAAGGAATGTGCC 60.056 43.478 0.00 0.00 34.19 5.01
4008 7259 4.019792 ACTGAAACCAGTCATACATGCA 57.980 40.909 0.00 0.00 40.68 3.96
4009 7260 4.592942 ACTGAAACCAGTCATACATGCAT 58.407 39.130 0.00 0.00 40.68 3.96
4010 7261 4.397103 ACTGAAACCAGTCATACATGCATG 59.603 41.667 25.09 25.09 40.68 4.06
4012 7263 1.683943 ACCAGTCATACATGCATGCC 58.316 50.000 26.53 9.38 0.00 4.40
4013 7264 0.589708 CCAGTCATACATGCATGCCG 59.410 55.000 26.53 14.67 0.00 5.69
4030 7281 2.758423 TGCCGAAGTGAAGAGCATAGTA 59.242 45.455 0.00 0.00 0.00 1.82
4067 7319 2.753849 GGGGCATGCGGCTGTTTA 60.754 61.111 12.44 0.00 44.01 2.01
4079 7331 3.335579 CGGCTGTTTACTAAAAGGCTCT 58.664 45.455 0.00 0.00 0.00 4.09
4080 7332 4.501071 CGGCTGTTTACTAAAAGGCTCTA 58.499 43.478 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.834612 TGAACTTGTTCACCCGGACT 59.165 50.000 0.73 0.00 0.00 3.85
272 274 3.076621 CTGCTTCTGCTGAAACCACATA 58.923 45.455 7.48 0.00 40.01 2.29
353 356 4.081142 CACCACTATCAGGTTGTCCATACA 60.081 45.833 0.00 0.00 37.23 2.29
390 393 2.028385 ACCACCGAGTGTCCTTCATTAC 60.028 50.000 3.82 0.00 0.00 1.89
407 411 0.679960 AAAATAGGAGCCGCCACCAC 60.680 55.000 6.92 0.00 40.02 4.16
488 492 4.450976 TCATGCGCAACCATATTAGACTT 58.549 39.130 17.11 0.00 0.00 3.01
536 540 2.278330 CCACCCAAAAGGCAGGAGC 61.278 63.158 0.00 0.00 40.58 4.70
610 615 8.638873 ACCATTATGGCTAGCTTTATTAAAACC 58.361 33.333 15.72 0.00 42.67 3.27
654 659 2.912025 GTTGGGTGGTGGTGGCTG 60.912 66.667 0.00 0.00 0.00 4.85
655 660 4.218686 GGTTGGGTGGTGGTGGCT 62.219 66.667 0.00 0.00 0.00 4.75
658 663 4.885270 TGCGGTTGGGTGGTGGTG 62.885 66.667 0.00 0.00 0.00 4.17
659 664 2.937959 AATTGCGGTTGGGTGGTGGT 62.938 55.000 0.00 0.00 0.00 4.16
660 665 0.896019 TAATTGCGGTTGGGTGGTGG 60.896 55.000 0.00 0.00 0.00 4.61
661 666 0.962489 TTAATTGCGGTTGGGTGGTG 59.038 50.000 0.00 0.00 0.00 4.17
662 667 1.616374 CTTTAATTGCGGTTGGGTGGT 59.384 47.619 0.00 0.00 0.00 4.16
663 668 1.616374 ACTTTAATTGCGGTTGGGTGG 59.384 47.619 0.00 0.00 0.00 4.61
664 669 2.352323 GGACTTTAATTGCGGTTGGGTG 60.352 50.000 0.00 0.00 0.00 4.61
665 670 1.890489 GGACTTTAATTGCGGTTGGGT 59.110 47.619 0.00 0.00 0.00 4.51
666 671 1.135517 CGGACTTTAATTGCGGTTGGG 60.136 52.381 0.00 0.00 0.00 4.12
667 672 1.731098 GCGGACTTTAATTGCGGTTGG 60.731 52.381 0.00 0.00 0.00 3.77
668 673 1.613270 GCGGACTTTAATTGCGGTTG 58.387 50.000 0.00 0.00 0.00 3.77
669 674 0.524414 GGCGGACTTTAATTGCGGTT 59.476 50.000 0.00 0.00 0.00 4.44
670 675 1.641123 CGGCGGACTTTAATTGCGGT 61.641 55.000 0.00 0.00 0.00 5.68
671 676 1.061887 CGGCGGACTTTAATTGCGG 59.938 57.895 0.00 0.00 0.00 5.69
672 677 1.582680 GCGGCGGACTTTAATTGCG 60.583 57.895 9.78 0.00 0.00 4.85
673 678 0.796870 GTGCGGCGGACTTTAATTGC 60.797 55.000 24.62 0.00 0.00 3.56
674 679 0.802494 AGTGCGGCGGACTTTAATTG 59.198 50.000 28.68 0.00 0.00 2.32
675 680 0.802494 CAGTGCGGCGGACTTTAATT 59.198 50.000 31.58 7.16 0.00 1.40
676 681 1.644786 GCAGTGCGGCGGACTTTAAT 61.645 55.000 31.58 7.99 0.00 1.40
677 682 2.322081 GCAGTGCGGCGGACTTTAA 61.322 57.895 31.58 0.00 0.00 1.52
678 683 2.740826 GCAGTGCGGCGGACTTTA 60.741 61.111 31.58 0.00 0.00 1.85
679 684 4.626081 AGCAGTGCGGCGGACTTT 62.626 61.111 31.58 19.42 39.27 2.66
690 695 3.289834 GTGGGTGTGGCAGCAGTG 61.290 66.667 0.00 0.00 33.07 3.66
691 696 4.586235 GGTGGGTGTGGCAGCAGT 62.586 66.667 0.00 0.00 33.07 4.40
692 697 4.584518 TGGTGGGTGTGGCAGCAG 62.585 66.667 0.00 0.00 33.07 4.24
693 698 4.892965 GTGGTGGGTGTGGCAGCA 62.893 66.667 0.00 0.00 33.07 4.41
718 723 3.633094 CTCTGGCGACGGTGGTCAG 62.633 68.421 17.29 17.29 43.61 3.51
719 724 3.680786 CTCTGGCGACGGTGGTCA 61.681 66.667 0.00 0.00 43.61 4.02
720 725 2.710724 AAACTCTGGCGACGGTGGTC 62.711 60.000 3.85 0.00 39.89 4.02
721 726 1.466025 TAAACTCTGGCGACGGTGGT 61.466 55.000 3.85 0.00 38.16 4.16
722 727 1.012486 GTAAACTCTGGCGACGGTGG 61.012 60.000 3.85 0.00 38.16 4.61
723 728 1.012486 GGTAAACTCTGGCGACGGTG 61.012 60.000 0.00 0.00 38.16 4.94
724 729 1.291272 GGTAAACTCTGGCGACGGT 59.709 57.895 0.00 0.00 38.16 4.83
725 730 1.804326 CGGTAAACTCTGGCGACGG 60.804 63.158 0.00 0.00 38.41 4.79
726 731 1.080974 ACGGTAAACTCTGGCGACG 60.081 57.895 0.00 0.00 0.00 5.12
727 732 1.012486 CCACGGTAAACTCTGGCGAC 61.012 60.000 0.00 0.00 0.00 5.19
728 733 1.290955 CCACGGTAAACTCTGGCGA 59.709 57.895 0.00 0.00 0.00 5.54
729 734 2.388232 GCCACGGTAAACTCTGGCG 61.388 63.158 6.02 0.00 39.92 5.69
730 735 3.574780 GCCACGGTAAACTCTGGC 58.425 61.111 6.02 6.02 42.41 4.85
731 736 0.899720 TAGGCCACGGTAAACTCTGG 59.100 55.000 5.01 0.00 0.00 3.86
732 737 1.405121 GGTAGGCCACGGTAAACTCTG 60.405 57.143 5.01 0.00 34.09 3.35
733 738 0.900421 GGTAGGCCACGGTAAACTCT 59.100 55.000 5.01 0.00 34.09 3.24
734 739 0.609662 TGGTAGGCCACGGTAAACTC 59.390 55.000 5.01 0.00 40.46 3.01
735 740 1.058284 TTGGTAGGCCACGGTAAACT 58.942 50.000 5.01 0.00 46.01 2.66
736 741 1.894881 TTTGGTAGGCCACGGTAAAC 58.105 50.000 5.01 0.00 46.01 2.01
737 742 2.653234 TTTTGGTAGGCCACGGTAAA 57.347 45.000 5.01 0.00 46.01 2.01
738 743 2.883122 ATTTTGGTAGGCCACGGTAA 57.117 45.000 5.01 0.00 46.01 2.85
739 744 2.040012 TGAATTTTGGTAGGCCACGGTA 59.960 45.455 5.01 0.00 46.01 4.02
740 745 1.202952 TGAATTTTGGTAGGCCACGGT 60.203 47.619 5.01 0.00 46.01 4.83
741 746 1.201414 GTGAATTTTGGTAGGCCACGG 59.799 52.381 5.01 0.00 46.01 4.94
742 747 2.159382 AGTGAATTTTGGTAGGCCACG 58.841 47.619 5.01 0.00 46.01 4.94
743 748 4.600692 AAAGTGAATTTTGGTAGGCCAC 57.399 40.909 5.01 0.31 46.01 5.01
744 749 5.245075 CCTAAAAGTGAATTTTGGTAGGCCA 59.755 40.000 5.01 0.00 41.26 5.36
745 750 5.337250 CCCTAAAAGTGAATTTTGGTAGGCC 60.337 44.000 0.35 0.00 41.26 5.19
746 751 5.337250 CCCCTAAAAGTGAATTTTGGTAGGC 60.337 44.000 0.35 0.00 41.26 3.93
747 752 6.014012 TCCCCTAAAAGTGAATTTTGGTAGG 58.986 40.000 0.35 0.08 41.26 3.18
748 753 7.615757 AGATCCCCTAAAAGTGAATTTTGGTAG 59.384 37.037 0.35 0.00 41.26 3.18
749 754 7.475299 AGATCCCCTAAAAGTGAATTTTGGTA 58.525 34.615 0.35 0.00 41.26 3.25
750 755 6.322931 AGATCCCCTAAAAGTGAATTTTGGT 58.677 36.000 0.35 0.00 41.26 3.67
751 756 6.857437 AGATCCCCTAAAAGTGAATTTTGG 57.143 37.500 0.35 0.00 41.26 3.28
752 757 7.120726 ACGTAGATCCCCTAAAAGTGAATTTTG 59.879 37.037 0.35 0.00 41.26 2.44
753 758 7.120726 CACGTAGATCCCCTAAAAGTGAATTTT 59.879 37.037 0.00 0.00 43.54 1.82
754 759 6.598064 CACGTAGATCCCCTAAAAGTGAATTT 59.402 38.462 0.00 0.00 34.39 1.82
755 760 6.070424 TCACGTAGATCCCCTAAAAGTGAATT 60.070 38.462 0.00 0.00 36.50 2.17
756 761 5.424252 TCACGTAGATCCCCTAAAAGTGAAT 59.576 40.000 0.00 0.00 36.50 2.57
757 762 4.773674 TCACGTAGATCCCCTAAAAGTGAA 59.226 41.667 0.00 0.00 36.50 3.18
758 763 4.346730 TCACGTAGATCCCCTAAAAGTGA 58.653 43.478 0.00 0.00 36.79 3.41
759 764 4.730949 TCACGTAGATCCCCTAAAAGTG 57.269 45.455 0.00 0.00 34.08 3.16
760 765 4.529377 TGTTCACGTAGATCCCCTAAAAGT 59.471 41.667 0.00 0.00 0.00 2.66
761 766 5.080969 TGTTCACGTAGATCCCCTAAAAG 57.919 43.478 0.00 0.00 0.00 2.27
762 767 5.484715 CTTGTTCACGTAGATCCCCTAAAA 58.515 41.667 0.00 0.00 0.00 1.52
763 768 4.081309 CCTTGTTCACGTAGATCCCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
764 769 3.449737 CCTTGTTCACGTAGATCCCCTAA 59.550 47.826 0.00 0.00 0.00 2.69
765 770 3.028850 CCTTGTTCACGTAGATCCCCTA 58.971 50.000 0.00 0.00 0.00 3.53
766 771 1.831736 CCTTGTTCACGTAGATCCCCT 59.168 52.381 0.00 0.00 0.00 4.79
767 772 1.829222 TCCTTGTTCACGTAGATCCCC 59.171 52.381 0.00 0.00 0.00 4.81
768 773 3.604875 TTCCTTGTTCACGTAGATCCC 57.395 47.619 0.00 0.00 0.00 3.85
769 774 4.753107 TGTTTTCCTTGTTCACGTAGATCC 59.247 41.667 0.00 0.00 0.00 3.36
770 775 5.333875 GGTGTTTTCCTTGTTCACGTAGATC 60.334 44.000 0.00 0.00 0.00 2.75
771 776 4.514066 GGTGTTTTCCTTGTTCACGTAGAT 59.486 41.667 0.00 0.00 0.00 1.98
772 777 3.872771 GGTGTTTTCCTTGTTCACGTAGA 59.127 43.478 0.00 0.00 0.00 2.59
773 778 3.875134 AGGTGTTTTCCTTGTTCACGTAG 59.125 43.478 0.00 0.00 33.52 3.51
774 779 3.872771 GAGGTGTTTTCCTTGTTCACGTA 59.127 43.478 0.00 0.00 38.02 3.57
775 780 2.681344 GAGGTGTTTTCCTTGTTCACGT 59.319 45.455 0.00 0.00 38.02 4.49
776 781 2.680841 TGAGGTGTTTTCCTTGTTCACG 59.319 45.455 0.00 0.00 38.02 4.35
777 782 3.181490 GGTGAGGTGTTTTCCTTGTTCAC 60.181 47.826 0.00 0.00 38.02 3.18
778 783 3.020984 GGTGAGGTGTTTTCCTTGTTCA 58.979 45.455 0.00 0.00 38.02 3.18
779 784 3.066760 CAGGTGAGGTGTTTTCCTTGTTC 59.933 47.826 0.00 0.00 38.02 3.18
780 785 3.023832 CAGGTGAGGTGTTTTCCTTGTT 58.976 45.455 0.00 0.00 38.02 2.83
781 786 2.025321 ACAGGTGAGGTGTTTTCCTTGT 60.025 45.455 0.00 0.00 38.02 3.16
782 787 2.618709 GACAGGTGAGGTGTTTTCCTTG 59.381 50.000 0.00 0.00 38.02 3.61
783 788 2.241176 TGACAGGTGAGGTGTTTTCCTT 59.759 45.455 0.00 0.00 38.02 3.36
784 789 1.843851 TGACAGGTGAGGTGTTTTCCT 59.156 47.619 0.00 0.00 40.97 3.36
785 790 2.341846 TGACAGGTGAGGTGTTTTCC 57.658 50.000 0.00 0.00 0.00 3.13
786 791 3.279434 AGTTGACAGGTGAGGTGTTTTC 58.721 45.455 0.00 0.00 0.00 2.29
787 792 3.366052 AGTTGACAGGTGAGGTGTTTT 57.634 42.857 0.00 0.00 0.00 2.43
788 793 3.279434 GAAGTTGACAGGTGAGGTGTTT 58.721 45.455 0.00 0.00 0.00 2.83
789 794 2.421529 GGAAGTTGACAGGTGAGGTGTT 60.422 50.000 0.00 0.00 0.00 3.32
790 795 1.141053 GGAAGTTGACAGGTGAGGTGT 59.859 52.381 0.00 0.00 0.00 4.16
791 796 1.543429 GGGAAGTTGACAGGTGAGGTG 60.543 57.143 0.00 0.00 0.00 4.00
792 797 0.765510 GGGAAGTTGACAGGTGAGGT 59.234 55.000 0.00 0.00 0.00 3.85
793 798 0.036875 GGGGAAGTTGACAGGTGAGG 59.963 60.000 0.00 0.00 0.00 3.86
794 799 1.059913 AGGGGAAGTTGACAGGTGAG 58.940 55.000 0.00 0.00 0.00 3.51
795 800 2.409064 TAGGGGAAGTTGACAGGTGA 57.591 50.000 0.00 0.00 0.00 4.02
796 801 3.502123 TTTAGGGGAAGTTGACAGGTG 57.498 47.619 0.00 0.00 0.00 4.00
797 802 4.741928 AATTTAGGGGAAGTTGACAGGT 57.258 40.909 0.00 0.00 0.00 4.00
798 803 5.279456 CCAAAATTTAGGGGAAGTTGACAGG 60.279 44.000 0.00 0.00 0.00 4.00
799 804 5.538433 TCCAAAATTTAGGGGAAGTTGACAG 59.462 40.000 8.49 0.00 0.00 3.51
800 805 5.459505 TCCAAAATTTAGGGGAAGTTGACA 58.540 37.500 8.49 0.00 0.00 3.58
801 806 6.413783 TTCCAAAATTTAGGGGAAGTTGAC 57.586 37.500 12.41 0.00 34.63 3.18
802 807 6.384305 TGTTTCCAAAATTTAGGGGAAGTTGA 59.616 34.615 14.72 3.17 40.27 3.18
803 808 6.587273 TGTTTCCAAAATTTAGGGGAAGTTG 58.413 36.000 14.72 0.00 40.27 3.16
804 809 6.687901 GCTGTTTCCAAAATTTAGGGGAAGTT 60.688 38.462 14.72 0.00 40.27 2.66
805 810 5.221641 GCTGTTTCCAAAATTTAGGGGAAGT 60.222 40.000 14.72 0.00 40.27 3.01
806 811 5.237815 GCTGTTTCCAAAATTTAGGGGAAG 58.762 41.667 14.72 8.25 40.27 3.46
807 812 4.041075 GGCTGTTTCCAAAATTTAGGGGAA 59.959 41.667 12.41 12.41 37.63 3.97
808 813 3.580895 GGCTGTTTCCAAAATTTAGGGGA 59.419 43.478 8.49 5.72 0.00 4.81
809 814 3.307410 GGGCTGTTTCCAAAATTTAGGGG 60.307 47.826 8.49 3.67 0.00 4.79
810 815 3.326297 TGGGCTGTTTCCAAAATTTAGGG 59.674 43.478 0.00 0.00 0.00 3.53
811 816 4.040339 ACTGGGCTGTTTCCAAAATTTAGG 59.960 41.667 0.00 0.00 33.36 2.69
812 817 4.990426 CACTGGGCTGTTTCCAAAATTTAG 59.010 41.667 0.00 0.00 33.36 1.85
813 818 4.651503 TCACTGGGCTGTTTCCAAAATTTA 59.348 37.500 0.00 0.00 33.36 1.40
814 819 3.454082 TCACTGGGCTGTTTCCAAAATTT 59.546 39.130 0.00 0.00 33.36 1.82
815 820 3.037549 TCACTGGGCTGTTTCCAAAATT 58.962 40.909 0.00 0.00 33.36 1.82
816 821 2.365293 GTCACTGGGCTGTTTCCAAAAT 59.635 45.455 0.00 0.00 33.36 1.82
817 822 1.754226 GTCACTGGGCTGTTTCCAAAA 59.246 47.619 0.00 0.00 33.36 2.44
818 823 1.341482 TGTCACTGGGCTGTTTCCAAA 60.341 47.619 0.00 0.00 33.36 3.28
819 824 0.257328 TGTCACTGGGCTGTTTCCAA 59.743 50.000 0.00 0.00 33.36 3.53
820 825 0.478072 ATGTCACTGGGCTGTTTCCA 59.522 50.000 0.00 0.00 0.00 3.53
821 826 1.620822 AATGTCACTGGGCTGTTTCC 58.379 50.000 0.00 0.00 0.00 3.13
822 827 2.029918 GGAAATGTCACTGGGCTGTTTC 60.030 50.000 0.00 0.00 0.00 2.78
823 828 1.963515 GGAAATGTCACTGGGCTGTTT 59.036 47.619 0.00 0.00 0.00 2.83
824 829 1.145738 AGGAAATGTCACTGGGCTGTT 59.854 47.619 0.00 0.00 0.00 3.16
825 830 0.773644 AGGAAATGTCACTGGGCTGT 59.226 50.000 0.00 0.00 0.00 4.40
826 831 1.915141 AAGGAAATGTCACTGGGCTG 58.085 50.000 0.00 0.00 0.00 4.85
827 832 2.683211 AAAGGAAATGTCACTGGGCT 57.317 45.000 0.00 0.00 0.00 5.19
828 833 5.170748 CAATAAAAGGAAATGTCACTGGGC 58.829 41.667 0.00 0.00 0.00 5.36
829 834 5.170748 GCAATAAAAGGAAATGTCACTGGG 58.829 41.667 0.00 0.00 0.00 4.45
830 835 5.170748 GGCAATAAAAGGAAATGTCACTGG 58.829 41.667 0.00 0.00 0.00 4.00
831 836 5.782047 TGGCAATAAAAGGAAATGTCACTG 58.218 37.500 0.00 0.00 0.00 3.66
832 837 6.610075 ATGGCAATAAAAGGAAATGTCACT 57.390 33.333 0.00 0.00 0.00 3.41
833 838 7.099120 AGAATGGCAATAAAAGGAAATGTCAC 58.901 34.615 0.00 0.00 0.00 3.67
834 839 7.243604 AGAATGGCAATAAAAGGAAATGTCA 57.756 32.000 0.00 0.00 0.00 3.58
835 840 6.758416 GGAGAATGGCAATAAAAGGAAATGTC 59.242 38.462 0.00 0.00 0.00 3.06
836 841 6.441604 AGGAGAATGGCAATAAAAGGAAATGT 59.558 34.615 0.00 0.00 0.00 2.71
837 842 6.759827 CAGGAGAATGGCAATAAAAGGAAATG 59.240 38.462 0.00 0.00 0.00 2.32
838 843 6.631088 GCAGGAGAATGGCAATAAAAGGAAAT 60.631 38.462 0.00 0.00 0.00 2.17
839 844 5.337491 GCAGGAGAATGGCAATAAAAGGAAA 60.337 40.000 0.00 0.00 0.00 3.13
840 845 4.160252 GCAGGAGAATGGCAATAAAAGGAA 59.840 41.667 0.00 0.00 0.00 3.36
841 846 3.701040 GCAGGAGAATGGCAATAAAAGGA 59.299 43.478 0.00 0.00 0.00 3.36
842 847 3.181472 GGCAGGAGAATGGCAATAAAAGG 60.181 47.826 0.00 0.00 44.71 3.11
852 857 2.806945 TAGGTTTGGCAGGAGAATGG 57.193 50.000 0.00 0.00 0.00 3.16
917 922 1.016627 GATATGCTTGGCGCTTGTGA 58.983 50.000 7.64 0.00 40.11 3.58
949 1210 4.989168 AGTGTAGGTCGATTTGTTGACTTC 59.011 41.667 0.00 0.00 35.45 3.01
972 1233 0.396695 GGGGATCTCGAGGTGGTGTA 60.397 60.000 13.56 0.00 0.00 2.90
973 1234 1.686110 GGGGATCTCGAGGTGGTGT 60.686 63.158 13.56 0.00 0.00 4.16
974 1235 2.786495 CGGGGATCTCGAGGTGGTG 61.786 68.421 13.56 0.00 0.00 4.17
975 1236 2.442272 CGGGGATCTCGAGGTGGT 60.442 66.667 13.56 0.00 0.00 4.16
976 1237 3.227276 CCGGGGATCTCGAGGTGG 61.227 72.222 13.56 0.00 0.00 4.61
1092 1353 0.763035 GGTATAGGTGTGGCGGGATT 59.237 55.000 0.00 0.00 0.00 3.01
1093 1354 1.125711 GGGTATAGGTGTGGCGGGAT 61.126 60.000 0.00 0.00 0.00 3.85
1230 1491 3.432051 GATGGTGGCGACGGAGAGG 62.432 68.421 0.00 0.00 0.00 3.69
1358 1631 4.853924 TCTCAAACCATGGAAAAAGAGC 57.146 40.909 21.47 0.00 0.00 4.09
1503 1822 6.365520 TCTACTGTAGTATTGCCTCATCTGA 58.634 40.000 14.11 0.00 0.00 3.27
1654 1973 2.355363 CGTTCAGTTCGTCCCGCA 60.355 61.111 0.00 0.00 0.00 5.69
1734 2053 4.516698 GGCCATATGATTGACATCGACTTT 59.483 41.667 3.65 0.00 40.07 2.66
1981 2302 4.422073 TGAATCCGATGAAACCTGCTAT 57.578 40.909 0.00 0.00 0.00 2.97
2068 2389 1.209504 GTTCCCATCTTCGATCCCACA 59.790 52.381 0.00 0.00 0.00 4.17
2312 3033 1.531602 GCTGTTCCCTTGGGTTGCT 60.532 57.895 5.51 0.00 0.00 3.91
2616 3422 9.712305 AACTAATTAGTTATTCTCATCCCATCG 57.288 33.333 25.85 0.00 44.18 3.84
2812 3622 6.072893 TGACTGAAATTGATGACATGACACTG 60.073 38.462 0.00 0.00 0.00 3.66
2813 3623 5.999600 TGACTGAAATTGATGACATGACACT 59.000 36.000 0.00 0.00 0.00 3.55
2814 3624 6.072838 AGTGACTGAAATTGATGACATGACAC 60.073 38.462 0.00 0.00 0.00 3.67
2815 3625 5.999600 AGTGACTGAAATTGATGACATGACA 59.000 36.000 0.00 0.00 0.00 3.58
2816 3626 6.492007 AGTGACTGAAATTGATGACATGAC 57.508 37.500 0.00 0.00 0.00 3.06
2817 3627 6.314648 GCTAGTGACTGAAATTGATGACATGA 59.685 38.462 0.00 0.00 0.00 3.07
2818 3628 6.093082 TGCTAGTGACTGAAATTGATGACATG 59.907 38.462 0.00 0.00 0.00 3.21
2819 3629 6.093219 GTGCTAGTGACTGAAATTGATGACAT 59.907 38.462 0.00 0.00 0.00 3.06
2829 3639 5.063438 GCGATTTATGTGCTAGTGACTGAAA 59.937 40.000 0.00 0.00 0.00 2.69
2852 3662 4.783621 TGCGGCCCATCACAGAGC 62.784 66.667 0.00 0.00 0.00 4.09
2864 3674 4.978580 GGAAAGAAATCAAGATAATGCGGC 59.021 41.667 0.00 0.00 0.00 6.53
2883 5325 6.209192 ACACAATTGCAATCACTATCAGGAAA 59.791 34.615 13.38 0.00 0.00 3.13
3081 5534 4.805219 AGTACCCGAAATGCAAATTCAAC 58.195 39.130 13.91 7.44 0.00 3.18
3099 5552 5.527582 ACACTTGAACATCTTCACCAAGTAC 59.472 40.000 0.00 0.00 43.64 2.73
3101 5554 4.526970 ACACTTGAACATCTTCACCAAGT 58.473 39.130 0.00 0.00 45.57 3.16
3105 5558 3.876914 TGTGACACTTGAACATCTTCACC 59.123 43.478 7.20 0.00 36.06 4.02
3106 5559 5.294306 TCTTGTGACACTTGAACATCTTCAC 59.706 40.000 7.20 0.00 36.06 3.18
3114 5567 7.652105 TCTTAGTACATCTTGTGACACTTGAAC 59.348 37.037 7.20 1.40 31.98 3.18
3136 5589 5.178623 CGGTACAGCTGTTCAACAAATCTTA 59.821 40.000 27.06 0.00 0.00 2.10
3142 5595 2.206750 GACGGTACAGCTGTTCAACAA 58.793 47.619 27.06 1.88 36.69 2.83
3153 5622 3.667497 ATGATATGCTGGACGGTACAG 57.333 47.619 16.21 16.21 38.95 2.74
3190 5659 9.036980 AGTGATATCTAGGGTTATAATCACACC 57.963 37.037 13.25 0.00 0.00 4.16
3230 6467 2.464157 ACTGAAACTGCAGTAGCTCC 57.536 50.000 22.01 8.23 46.67 4.70
3291 6528 6.295292 GCCTTTTGAGGTCCAACTGAAAATAT 60.295 38.462 0.00 0.00 34.06 1.28
3293 6530 4.202253 GCCTTTTGAGGTCCAACTGAAAAT 60.202 41.667 0.00 0.00 34.06 1.82
3377 6620 5.743117 AGATCTGATTCCCTGAAGTTCTTG 58.257 41.667 4.17 0.00 0.00 3.02
3381 6624 5.032846 TGGTAGATCTGATTCCCTGAAGTT 58.967 41.667 5.18 0.00 0.00 2.66
3442 6685 8.370182 TCAGTAATTATGAGCTGCTTGATGATA 58.630 33.333 2.53 0.00 0.00 2.15
3462 6705 6.901300 AGGGAGTAGGACACAATAATCAGTAA 59.099 38.462 0.00 0.00 0.00 2.24
3472 6715 0.113776 ACGGAGGGAGTAGGACACAA 59.886 55.000 0.00 0.00 0.00 3.33
3525 6768 5.186797 TGAAGTTGTGTGGGTGATTCTTTTT 59.813 36.000 0.00 0.00 0.00 1.94
3533 6776 1.837439 AGTCTGAAGTTGTGTGGGTGA 59.163 47.619 0.00 0.00 0.00 4.02
3537 6780 8.378172 TCTTTAAATAGTCTGAAGTTGTGTGG 57.622 34.615 0.00 0.00 0.00 4.17
3560 6803 3.181439 GCCAGCCACTCCCTATAAAATCT 60.181 47.826 0.00 0.00 0.00 2.40
3561 6804 3.149981 GCCAGCCACTCCCTATAAAATC 58.850 50.000 0.00 0.00 0.00 2.17
3566 6809 1.113517 GTCGCCAGCCACTCCCTATA 61.114 60.000 0.00 0.00 0.00 1.31
3593 6837 6.716628 TGAGGTCTGATGCTTTTCAAGTATTT 59.283 34.615 0.00 0.00 33.79 1.40
3632 6879 6.528423 CACGTAACAGAAAGTTCTCTCCATAG 59.472 42.308 0.00 0.00 41.64 2.23
3648 6895 5.969423 TCCCTCCTATAAAACACGTAACAG 58.031 41.667 0.00 0.00 0.00 3.16
3655 6902 7.013369 CCTGCTATTTTCCCTCCTATAAAACAC 59.987 40.741 0.00 0.00 0.00 3.32
3656 6903 7.060421 CCTGCTATTTTCCCTCCTATAAAACA 58.940 38.462 0.00 0.00 0.00 2.83
3671 6918 3.844211 TCCACTCTACACCCTGCTATTTT 59.156 43.478 0.00 0.00 0.00 1.82
3672 6919 3.450904 TCCACTCTACACCCTGCTATTT 58.549 45.455 0.00 0.00 0.00 1.40
3717 6968 5.299279 ACCAATTTACAAGAGTCAGTTGGTG 59.701 40.000 8.35 0.00 40.75 4.17
3732 6983 9.705290 AATCCAACAACAGATTTACCAATTTAC 57.295 29.630 0.00 0.00 28.19 2.01
3772 7023 6.436843 ACAAATCTTAAAGCCCTAACATCG 57.563 37.500 0.00 0.00 0.00 3.84
3826 7077 7.161773 TGCTGCTGCTAAAGATTTTTAGATT 57.838 32.000 17.55 0.00 45.63 2.40
3845 7096 3.928375 CACATTCCTTGGTAAAATGCTGC 59.072 43.478 0.00 0.00 34.47 5.25
3847 7098 3.055891 GGCACATTCCTTGGTAAAATGCT 60.056 43.478 0.00 0.00 34.47 3.79
3869 7120 4.082787 AGCCCGTTGAAACAAATGATACTG 60.083 41.667 0.00 0.00 0.00 2.74
4008 7259 2.169352 ACTATGCTCTTCACTTCGGCAT 59.831 45.455 0.00 0.00 44.31 4.40
4009 7260 1.550524 ACTATGCTCTTCACTTCGGCA 59.449 47.619 0.00 0.00 37.32 5.69
4010 7261 2.301577 ACTATGCTCTTCACTTCGGC 57.698 50.000 0.00 0.00 0.00 5.54
4045 7296 2.604382 AGCCGCATGCCCCTTTTT 60.604 55.556 13.15 0.00 42.71 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.