AutoCloner

Multiple sequence alignment - TraesCS5D01G445400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G445400	chr5D	100.000	3454	0	0	1	3454	495777607	495781060	0.000000e+00	6379.0
1	TraesCS5D01G445400	chr5D	100.000	50	0	0	3029	3078	495780588	495780637	3.670000e-15	93.5
2	TraesCS5D01G445400	chr5D	100.000	50	0	0	2982	3031	495780635	495780684	3.670000e-15	93.5
3	TraesCS5D01G445400	chr5D	100.000	34	0	0	3360	3393	410639244	410639211	2.880000e-06	63.9
4	TraesCS5D01G445400	chr5D	96.970	33	1	0	3360	3392	416036180	416036212	4.820000e-04	56.5
5	TraesCS5D01G445400	chr5A	91.023	2083	86	38	458	2510	619723794	619725805	0.000000e+00	2717.0
6	TraesCS5D01G445400	chr5A	83.091	964	110	36	2514	3454	650579098	650578165	0.000000e+00	828.0
7	TraesCS5D01G445400	chr5A	91.577	463	27	8	1	459	619723306	619723760	2.260000e-176	628.0
8	TraesCS5D01G445400	chr5B	91.732	1669	87	24	618	2258	613030700	613032345	0.000000e+00	2270.0
9	TraesCS5D01G445400	chr5B	93.503	431	23	4	1	427	613029507	613029936	1.350000e-178	636.0
10	TraesCS5D01G445400	chr5B	94.500	200	9	2	2311	2510	613032667	613032864	1.200000e-79	307.0
11	TraesCS5D01G445400	chr5B	97.561	41	0	1	572	611	617821212	617821252	6.190000e-08	69.4
12	TraesCS5D01G445400	chr3B	80.596	1778	192	66	796	2497	499190736	499189036	0.000000e+00	1230.0
13	TraesCS5D01G445400	chr3B	90.909	44	4	0	2	45	122081644	122081601	3.720000e-05	60.2
14	TraesCS5D01G445400	chr6B	87.227	963	75	17	2513	3454	460606715	460607650	0.000000e+00	1053.0
15	TraesCS5D01G445400	chr6B	93.103	87	6	0	2943	3029	460607168	460607254	1.010000e-25	128.0
16	TraesCS5D01G445400	chr6B	77.064	218	42	7	1	211	682117636	682117420	6.060000e-23	119.0
17	TraesCS5D01G445400	chr3D	79.583	1582	183	61	796	2316	383594529	383593027	0.000000e+00	1003.0
18	TraesCS5D01G445400	chr3D	82.418	91	12	3	2513	2600	597633551	597633640	3.700000e-10	76.8
19	TraesCS5D01G445400	chr3D	89.362	47	4	1	571	616	514658062	514658016	1.340000e-04	58.4
20	TraesCS5D01G445400	chr3D	100.000	30	0	0	2	31	75643388	75643359	4.820000e-04	56.5
21	TraesCS5D01G445400	chr7D	85.104	960	105	30	2514	3454	616421953	616421013	0.000000e+00	946.0
22	TraesCS5D01G445400	chr7A	84.407	962	111	30	2513	3454	626946477	626945535	0.000000e+00	909.0
23	TraesCS5D01G445400	chr7A	85.926	135	16	3	3322	3454	36332163	36332030	1.290000e-29	141.0
24	TraesCS5D01G445400	chr3A	77.296	969	126	48	790	1712	506468272	506467352	5.180000e-133	484.0
25	TraesCS5D01G445400	chr3A	82.548	573	61	13	1722	2264	506463303	506462740	5.220000e-128	468.0
26	TraesCS5D01G445400	chr3A	100.000	34	0	0	3360	3393	734029265	734029298	2.880000e-06	63.9
27	TraesCS5D01G445400	chr3A	89.362	47	4	1	571	616	649547184	649547138	1.340000e-04	58.4
28	TraesCS5D01G445400	chr2B	82.468	308	52	2	1487	1793	382582164	382581858	5.680000e-68	268.0
29	TraesCS5D01G445400	chr2D	81.759	307	56	0	1487	1793	314341844	314341538	1.230000e-64	257.0
30	TraesCS5D01G445400	chr2D	93.478	46	2	1	569	613	592625000	592625045	2.220000e-07	67.6
31	TraesCS5D01G445400	chr6D	77.419	217	39	8	3	211	449917064	449916850	1.680000e-23	121.0
32	TraesCS5D01G445400	chr1A	97.619	42	0	1	573	613	234234140	234234099	1.720000e-08	71.3
33	TraesCS5D01G445400	chr1A	92.857	42	2	1	573	613	124882729	124882688	3.720000e-05	60.2
34	TraesCS5D01G445400	chr1A	86.275	51	7	0	1	51	45296014	45296064	4.820000e-04	56.5
35	TraesCS5D01G445400	chr7B	93.333	45	2	1	573	616	327273059	327273015	8.000000e-07	65.8
36	TraesCS5D01G445400	chr4D	83.544	79	4	6	3322	3393	3746302	3746378	8.000000e-07	65.8
37	TraesCS5D01G445400	chr4A	95.238	42	1	1	573	613	381220473	381220514	8.000000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G445400	chr5D	495777607	495781060	3453	False	2188.666667	6379	100.000	1	3454	3	chr5D.!!$F2	3453
1	TraesCS5D01G445400	chr5A	619723306	619725805	2499	False	1672.500000	2717	91.300	1	2510	2	chr5A.!!$F1	2509
2	TraesCS5D01G445400	chr5A	650578165	650579098	933	True	828.000000	828	83.091	2514	3454	1	chr5A.!!$R1	940
3	TraesCS5D01G445400	chr5B	613029507	613032864	3357	False	1071.000000	2270	93.245	1	2510	3	chr5B.!!$F2	2509
4	TraesCS5D01G445400	chr3B	499189036	499190736	1700	True	1230.000000	1230	80.596	796	2497	1	chr3B.!!$R2	1701
5	TraesCS5D01G445400	chr6B	460606715	460607650	935	False	590.500000	1053	90.165	2513	3454	2	chr6B.!!$F1	941
6	TraesCS5D01G445400	chr3D	383593027	383594529	1502	True	1003.000000	1003	79.583	796	2316	1	chr3D.!!$R2	1520
7	TraesCS5D01G445400	chr7D	616421013	616421953	940	True	946.000000	946	85.104	2514	3454	1	chr7D.!!$R1	940
8	TraesCS5D01G445400	chr7A	626945535	626946477	942	True	909.000000	909	84.407	2513	3454	1	chr7A.!!$R2	941
9	TraesCS5D01G445400	chr3A	506467352	506468272	920	True	484.000000	484	77.296	790	1712	1	chr3A.!!$R2	922
10	TraesCS5D01G445400	chr3A	506462740	506463303	563	True	468.000000	468	82.548	1722	2264	1	chr3A.!!$R1	542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
674	1352	1.068472	GGGACGGAGCGAGTATATGTG	60.068	57.143	0.0	0.0	0.0	3.21	F
2090	2907	0.179018	AAAGAAGCTTGCGGGACAGT	60.179	50.000	2.1	0.0	0.0	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2122	2939	0.317103	CAACCGCCTCGACTATCTCG	60.317	60.0	0.00	0.00	44.44	4.04	R
3048	4224	0.170339	GGATTTGCTACAACCGGTGC	59.830	55.0	8.52	7.99	0.00	5.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
278	282	6.893958	TTGTTGTTAATGCACGTTGATTTT	57.106	29.167	0.00	0.00	0.00	1.82
279	283	6.893958	TGTTGTTAATGCACGTTGATTTTT	57.106	29.167	0.00	0.00	0.00	1.94
496	1050	8.934507	TCAACATTTTTAAAAAGTACACTGGG	57.065	30.769	17.72	7.91	0.00	4.45
608	1162	8.739972	TCCCAAAAAGCTTGTCTTAGATTTATC	58.260	33.333	0.00	0.00	32.98	1.75
615	1169	9.810545	AAGCTTGTCTTAGATTTATCTAGACAC	57.189	33.333	19.86	14.31	41.54	3.67
616	1170	8.972127	AGCTTGTCTTAGATTTATCTAGACACA	58.028	33.333	19.86	12.87	41.54	3.72
659	1337	7.645402	ACAAATCTAAGTAAACTTTTGGGACG	58.355	34.615	0.00	0.00	37.40	4.79
674	1352	1.068472	GGGACGGAGCGAGTATATGTG	60.068	57.143	0.00	0.00	0.00	3.21
843	1524	1.550130	TTCCTACAGCAACTCCCCCG	61.550	60.000	0.00	0.00	0.00	5.73
947	1636	1.376609	CCTCCCTTTTTCGGCCATCG	61.377	60.000	2.24	0.00	40.90	3.84
960	1649	5.183014	TCGGCCATCGATCATATGTATAC	57.817	43.478	2.24	0.00	43.74	1.47
961	1650	4.887655	TCGGCCATCGATCATATGTATACT	59.112	41.667	2.24	0.00	43.74	2.12
962	1651	6.059484	TCGGCCATCGATCATATGTATACTA	58.941	40.000	2.24	0.00	43.74	1.82
963	1652	6.544564	TCGGCCATCGATCATATGTATACTAA	59.455	38.462	2.24	0.00	43.74	2.24
964	1653	6.858478	CGGCCATCGATCATATGTATACTAAG	59.142	42.308	2.24	0.00	42.43	2.18
966	1655	7.649705	GGCCATCGATCATATGTATACTAAGTG	59.350	40.741	0.00	0.00	0.00	3.16
967	1656	8.406297	GCCATCGATCATATGTATACTAAGTGA	58.594	37.037	4.17	4.21	0.00	3.41
1114	1813	4.039357	CTCCGACACGCCGACACT	62.039	66.667	0.00	0.00	0.00	3.55
1137	1863	4.483683	CGCGCAATCACACGTCCG	62.484	66.667	8.75	0.00	0.00	4.79
1153	1879	0.544697	TCCGGAAATACCTCTTGCCC	59.455	55.000	0.00	0.00	36.31	5.36
1364	2099	2.284995	AGGAAGAGGAAGCCGGCT	60.285	61.111	27.08	27.08	0.00	5.52
1413	2151	6.210784	TCGAAGAAGAAGAATAGGAACAGGAA	59.789	38.462	0.00	0.00	0.00	3.36
1414	2152	6.311690	CGAAGAAGAAGAATAGGAACAGGAAC	59.688	42.308	0.00	0.00	0.00	3.62
1415	2153	6.688073	AGAAGAAGAATAGGAACAGGAACA	57.312	37.500	0.00	0.00	0.00	3.18
1416	2154	6.706295	AGAAGAAGAATAGGAACAGGAACAG	58.294	40.000	0.00	0.00	0.00	3.16
1417	2155	6.498651	AGAAGAAGAATAGGAACAGGAACAGA	59.501	38.462	0.00	0.00	0.00	3.41
1418	2156	6.688073	AGAAGAATAGGAACAGGAACAGAA	57.312	37.500	0.00	0.00	0.00	3.02
1419	2157	7.079451	AGAAGAATAGGAACAGGAACAGAAA	57.921	36.000	0.00	0.00	0.00	2.52
1420	2158	6.937465	AGAAGAATAGGAACAGGAACAGAAAC	59.063	38.462	0.00	0.00	0.00	2.78
1421	2159	6.187727	AGAATAGGAACAGGAACAGAAACA	57.812	37.500	0.00	0.00	0.00	2.83
1422	2160	6.234177	AGAATAGGAACAGGAACAGAAACAG	58.766	40.000	0.00	0.00	0.00	3.16
1423	2161	3.214696	AGGAACAGGAACAGAAACAGG	57.785	47.619	0.00	0.00	0.00	4.00
1424	2162	2.158608	AGGAACAGGAACAGAAACAGGG	60.159	50.000	0.00	0.00	0.00	4.45
1660	2429	2.750657	CCCCATCACCTGGCTCCTC	61.751	68.421	0.00	0.00	44.46	3.71
1931	2706	3.136123	CCGACGTCGAGGGCCTAA	61.136	66.667	37.65	0.00	43.02	2.69
1978	2753	4.425520	GGTTTCTCTTCCGAGTGTATCAG	58.574	47.826	0.00	0.00	38.45	2.90
1999	2777	2.888863	GAGAGCAGGGACGTCCAG	59.111	66.667	34.40	26.09	38.24	3.86
2086	2885	1.167851	CATCAAAGAAGCTTGCGGGA	58.832	50.000	2.10	0.00	0.00	5.14
2090	2907	0.179018	AAAGAAGCTTGCGGGACAGT	60.179	50.000	2.10	0.00	0.00	3.55
2159	2976	1.228276	GGGGAGGAAATGGCGGATC	60.228	63.158	0.00	0.00	0.00	3.36
2325	3446	1.070786	TGCGACTCCCCAACACTTC	59.929	57.895	0.00	0.00	0.00	3.01
2346	3467	6.206048	ACTTCGGGTCCTAAATTTTTACACTG	59.794	38.462	0.00	0.00	0.00	3.66
2347	3468	5.623169	TCGGGTCCTAAATTTTTACACTGT	58.377	37.500	0.00	0.00	0.00	3.55
2599	3736	0.963856	TGGATCGTGCGAGTACTGGT	60.964	55.000	0.00	0.00	0.00	4.00
2604	3741	1.577922	GTGCGAGTACTGGTGACGA	59.422	57.895	0.00	0.00	0.00	4.20
2611	3748	0.882474	GTACTGGTGACGAGAGCACT	59.118	55.000	0.45	0.00	37.94	4.40
2653	3792	4.192317	GACGGAAGCACTCTTATCCAATT	58.808	43.478	0.00	0.00	31.48	2.32
2660	3799	8.037166	GGAAGCACTCTTATCCAATTGATTTTT	58.963	33.333	7.12	0.00	34.76	1.94
2693	3832	4.351938	CCACGACGCGGACTCCAA	62.352	66.667	12.47	0.00	0.00	3.53
2824	3963	2.190578	GACCCCTCGCTCCCATTG	59.809	66.667	0.00	0.00	0.00	2.82
2833	3972	2.123982	CTCCCATTGGCAGCTCCC	60.124	66.667	0.00	0.00	0.00	4.30
2838	3977	0.901580	CCATTGGCAGCTCCCTGTTT	60.902	55.000	0.00	0.00	41.26	2.83
2980	4156	2.102357	CTCGTAGCACGCGGTCAT	59.898	61.111	12.47	0.00	42.21	3.06
3030	4206	1.436195	TAGCAAATCCATGTCGCCGC	61.436	55.000	0.00	0.00	0.00	6.53
3037	4213	4.805231	CATGTCGCCGCGGTGGTA	62.805	66.667	36.19	25.48	41.21	3.25
3038	4214	4.508128	ATGTCGCCGCGGTGGTAG	62.508	66.667	36.19	17.90	41.21	3.18
3043	4219	3.358707	GCCGCGGTGGTAGCAAAA	61.359	61.111	28.70	0.00	41.21	2.44
3044	4220	2.910345	GCCGCGGTGGTAGCAAAAA	61.910	57.895	28.70	0.00	41.21	1.94
3058	4234	3.202467	AAAAAGCGCACCGGTTGT	58.798	50.000	11.47	0.00	46.74	3.32
3059	4235	2.406205	AAAAAGCGCACCGGTTGTA	58.594	47.368	11.47	0.00	46.74	2.41
3060	4236	0.309612	AAAAAGCGCACCGGTTGTAG	59.690	50.000	11.47	0.00	46.74	2.74
3061	4237	2.125202	AAAAGCGCACCGGTTGTAGC	62.125	55.000	11.47	8.42	46.74	3.58
3062	4238	3.818121	AAGCGCACCGGTTGTAGCA	62.818	57.895	11.47	0.00	45.71	3.49
3063	4239	3.350612	GCGCACCGGTTGTAGCAA	61.351	61.111	2.97	0.00	33.11	3.91
3124	4301	1.240641	CCACCGCATACCAGTTGCAA	61.241	55.000	0.00	0.00	40.14	4.08
3189	4367	0.672401	AATTCGCAACCCGTCATCGT	60.672	50.000	0.00	0.00	38.35	3.73
3200	4378	1.509463	GTCATCGTCGGCCACACTA	59.491	57.895	2.24	0.00	0.00	2.74
3228	4406	4.097286	GTCTTCCTGGTTGTAGCAAAAACA	59.903	41.667	0.00	0.00	0.00	2.83
3305	4483	4.362946	CGTCGCGCGGAAAAAGCA	62.363	61.111	31.69	4.34	36.85	3.91
3314	4492	2.687370	GCGGAAAAAGCATCAACCATT	58.313	42.857	0.00	0.00	34.19	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
334	339	4.894784	ACCACGACATCTAGAAAACATGT	58.105	39.130	0.00	0.00	33.32	3.21
567	1121	7.454694	AGCTTTTTGGGATGGGGTAATATATTC	59.545	37.037	0.00	0.00	0.00	1.75
581	1135	7.544804	AAATCTAAGACAAGCTTTTTGGGAT	57.455	32.000	0.00	0.00	38.05	3.85
645	1322	1.070445	TCGCTCCGTCCCAAAAGTTTA	59.930	47.619	0.00	0.00	0.00	2.01
659	1337	7.065923	TCAGATACATACACATATACTCGCTCC	59.934	40.741	0.00	0.00	0.00	4.70
843	1524	4.664150	CTGTCTTGGAGAGAGGATAACC	57.336	50.000	0.00	0.00	32.48	2.85
962	1651	9.014297	GGCTTTGGCAAAGTATATATATCACTT	57.986	33.333	33.45	5.39	40.64	3.16
963	1652	7.334421	CGGCTTTGGCAAAGTATATATATCACT	59.666	37.037	33.45	0.00	40.64	3.41
964	1653	7.119262	ACGGCTTTGGCAAAGTATATATATCAC	59.881	37.037	33.45	16.51	40.64	3.06
966	1655	7.333423	TGACGGCTTTGGCAAAGTATATATATC	59.667	37.037	33.45	21.24	40.64	1.63
967	1656	7.165485	TGACGGCTTTGGCAAAGTATATATAT	58.835	34.615	33.45	15.46	40.64	0.86
986	1675	3.567797	GCAATCGGAGCTGACGGC	61.568	66.667	0.00	0.00	42.19	5.68
1097	1796	4.039357	AGTGTCGGCGTGTCGGAG	62.039	66.667	6.85	0.00	0.00	4.63
1137	1863	3.366052	TCAAGGGCAAGAGGTATTTCC	57.634	47.619	0.00	0.00	0.00	3.13
1153	1879	2.103042	CGCCGCCCTCTTCTTCAAG	61.103	63.158	0.00	0.00	0.00	3.02
1413	2151	4.353777	TCTACTGCTATCCCTGTTTCTGT	58.646	43.478	0.00	0.00	0.00	3.41
1414	2152	5.344743	TTCTACTGCTATCCCTGTTTCTG	57.655	43.478	0.00	0.00	0.00	3.02
1415	2153	5.721960	TCTTTCTACTGCTATCCCTGTTTCT	59.278	40.000	0.00	0.00	0.00	2.52
1416	2154	5.978814	TCTTTCTACTGCTATCCCTGTTTC	58.021	41.667	0.00	0.00	0.00	2.78
1417	2155	6.374417	TTCTTTCTACTGCTATCCCTGTTT	57.626	37.500	0.00	0.00	0.00	2.83
1418	2156	5.104735	CCTTCTTTCTACTGCTATCCCTGTT	60.105	44.000	0.00	0.00	0.00	3.16
1419	2157	4.407296	CCTTCTTTCTACTGCTATCCCTGT	59.593	45.833	0.00	0.00	0.00	4.00
1420	2158	4.202305	CCCTTCTTTCTACTGCTATCCCTG	60.202	50.000	0.00	0.00	0.00	4.45
1421	2159	3.970640	CCCTTCTTTCTACTGCTATCCCT	59.029	47.826	0.00	0.00	0.00	4.20
1422	2160	3.967987	TCCCTTCTTTCTACTGCTATCCC	59.032	47.826	0.00	0.00	0.00	3.85
1423	2161	4.202274	GGTCCCTTCTTTCTACTGCTATCC	60.202	50.000	0.00	0.00	0.00	2.59
1424	2162	4.500035	CGGTCCCTTCTTTCTACTGCTATC	60.500	50.000	0.00	0.00	0.00	2.08
1660	2429	2.513204	TACGTCTCCTCCTCGGCG	60.513	66.667	0.00	0.00	0.00	6.46
1854	2623	1.197721	CCCACAGCTCGATGACAAAAC	59.802	52.381	0.00	0.00	0.00	2.43
1978	2753	3.053849	GACGTCCCTGCTCTCGTCC	62.054	68.421	3.51	0.00	44.18	4.79
2006	2784	2.266055	CCGCCTTTCTTCCTCGCT	59.734	61.111	0.00	0.00	0.00	4.93
2122	2939	0.317103	CAACCGCCTCGACTATCTCG	60.317	60.000	0.00	0.00	44.44	4.04
2225	3042	2.200067	CTAGCAAATCTGAGCAGACGG	58.800	52.381	1.71	0.00	40.75	4.79
2325	3446	5.470777	TCACAGTGTAAAAATTTAGGACCCG	59.529	40.000	0.00	0.00	0.00	5.28
2510	3645	1.299850	GCAGCAAACGTTTCCCACC	60.300	57.895	11.37	0.00	0.00	4.61
2511	3646	1.299850	GGCAGCAAACGTTTCCCAC	60.300	57.895	11.37	1.35	0.00	4.61
2611	3748	5.273170	CGTCATCTGTTTTTCTTTTGAGCA	58.727	37.500	0.00	0.00	0.00	4.26
2615	3752	5.173854	GCTTCCGTCATCTGTTTTTCTTTTG	59.826	40.000	0.00	0.00	0.00	2.44
2618	3755	3.882888	TGCTTCCGTCATCTGTTTTTCTT	59.117	39.130	0.00	0.00	0.00	2.52
2619	3756	3.251004	GTGCTTCCGTCATCTGTTTTTCT	59.749	43.478	0.00	0.00	0.00	2.52
2620	3757	3.251004	AGTGCTTCCGTCATCTGTTTTTC	59.749	43.478	0.00	0.00	0.00	2.29
2660	3799	1.555075	CGTGGGGAAGAAGATGAGGAA	59.445	52.381	0.00	0.00	0.00	3.36
2661	3800	1.195115	CGTGGGGAAGAAGATGAGGA	58.805	55.000	0.00	0.00	0.00	3.71
2693	3832	3.971702	GGTTCTGCAGGTGCCCCT	61.972	66.667	15.13	0.00	44.02	4.79
2702	3841	1.676635	GCTGATGCCTGGTTCTGCA	60.677	57.895	18.59	2.72	42.52	4.41
2743	3882	1.210931	CTGTGCAGCAATCCAACCG	59.789	57.895	0.00	0.00	0.00	4.44
2817	3956	2.614969	AGGGAGCTGCCAATGGGA	60.615	61.111	27.56	0.00	38.95	4.37
2824	3963	0.957888	GAGACAAACAGGGAGCTGCC	60.958	60.000	18.04	18.04	0.00	4.85
2833	3972	0.250295	TTCCAGCGGGAGACAAACAG	60.250	55.000	5.52	0.00	46.01	3.16
2838	3977	1.255667	GGTACTTCCAGCGGGAGACA	61.256	60.000	5.52	0.00	46.01	3.41
2980	4156	4.458666	TTTTTGCTACCACCGCGA	57.541	50.000	8.23	0.00	0.00	5.87
3041	4217	0.309612	CTACAACCGGTGCGCTTTTT	59.690	50.000	8.52	0.00	0.00	1.94
3042	4218	1.946267	CTACAACCGGTGCGCTTTT	59.054	52.632	8.52	0.00	0.00	2.27
3043	4219	2.613506	GCTACAACCGGTGCGCTTT	61.614	57.895	8.52	0.00	0.00	3.51
3044	4220	3.047877	GCTACAACCGGTGCGCTT	61.048	61.111	8.52	0.00	0.00	4.68
3045	4221	3.818121	TTGCTACAACCGGTGCGCT	62.818	57.895	8.52	0.00	0.00	5.92
3046	4222	2.195123	ATTTGCTACAACCGGTGCGC	62.195	55.000	8.52	9.39	0.00	6.09
3047	4223	0.179200	GATTTGCTACAACCGGTGCG	60.179	55.000	8.52	5.03	0.00	5.34
3048	4224	0.170339	GGATTTGCTACAACCGGTGC	59.830	55.000	8.52	7.99	0.00	5.01
3049	4225	1.529226	TGGATTTGCTACAACCGGTG	58.471	50.000	8.52	4.99	0.00	4.94
3050	4226	2.091541	CATGGATTTGCTACAACCGGT	58.908	47.619	0.00	0.00	0.00	5.28
3051	4227	2.091541	ACATGGATTTGCTACAACCGG	58.908	47.619	0.00	0.00	0.00	5.28
3052	4228	2.223021	CGACATGGATTTGCTACAACCG	60.223	50.000	0.00	0.00	0.00	4.44
3053	4229	2.477863	GCGACATGGATTTGCTACAACC	60.478	50.000	0.00	0.00	0.00	3.77
3054	4230	2.477863	GGCGACATGGATTTGCTACAAC	60.478	50.000	0.00	0.00	0.00	3.32
3055	4231	1.742831	GGCGACATGGATTTGCTACAA	59.257	47.619	0.00	0.00	0.00	2.41
3056	4232	1.378531	GGCGACATGGATTTGCTACA	58.621	50.000	0.00	0.00	0.00	2.74
3057	4233	0.304705	CGGCGACATGGATTTGCTAC	59.695	55.000	0.00	0.00	0.00	3.58
3058	4234	1.436195	GCGGCGACATGGATTTGCTA	61.436	55.000	12.98	0.00	0.00	3.49
3059	4235	2.764314	GCGGCGACATGGATTTGCT	61.764	57.895	12.98	0.00	0.00	3.91
3060	4236	2.278142	GCGGCGACATGGATTTGC	60.278	61.111	12.98	0.00	0.00	3.68
3061	4237	1.353103	GAGCGGCGACATGGATTTG	59.647	57.895	12.98	0.00	0.00	2.32
3062	4238	2.173669	CGAGCGGCGACATGGATTT	61.174	57.895	12.98	0.00	44.57	2.17
3063	4239	2.586079	CGAGCGGCGACATGGATT	60.586	61.111	12.98	0.00	44.57	3.01
3200	4378	1.268899	CTACAACCAGGAAGACGACGT	59.731	52.381	0.00	0.00	0.00	4.34
3305	4483	3.059166	GCTTTTCGCACAAATGGTTGAT	58.941	40.909	0.00	0.00	38.20	2.57
3314	4492	1.532921	CGGTTGAAGCTTTTCGCACAA	60.533	47.619	0.00	0.00	42.61	3.33
3395	4575	8.044574	TCATGATGGTTGAAGATATTTCCCTA	57.955	34.615	0.00	0.00	0.00	3.53
3396	4576	6.914665	TCATGATGGTTGAAGATATTTCCCT	58.085	36.000	0.00	0.00	0.00	4.20
3397	4577	7.587037	TTCATGATGGTTGAAGATATTTCCC	57.413	36.000	0.00	0.00	0.00	3.97

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.