Multiple sequence alignment - TraesCS5D01G445100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G445100 chr5D 100.000 4173 0 0 580 4752 495625704 495629876 0.000000e+00 7707
1 TraesCS5D01G445100 chr5D 100.000 240 0 0 1 240 495625125 495625364 1.210000e-120 444
2 TraesCS5D01G445100 chr5D 93.023 86 3 2 2584 2669 495627747 495627829 6.460000e-24 122
3 TraesCS5D01G445100 chr5A 92.213 2106 88 34 2663 4751 619691563 619693609 0.000000e+00 2911
4 TraesCS5D01G445100 chr5A 80.254 866 88 35 1051 1863 619689701 619690536 4.120000e-160 575
5 TraesCS5D01G445100 chr5A 79.032 496 70 23 2229 2705 619690858 619691338 4.620000e-80 309
6 TraesCS5D01G445100 chr5A 95.070 142 7 0 2623 2764 619691292 619691433 1.720000e-54 224
7 TraesCS5D01G445100 chr5A 94.737 133 7 0 2667 2799 619691428 619691560 1.730000e-49 207
8 TraesCS5D01G445100 chr5A 84.071 226 13 15 1 218 619688384 619688594 3.750000e-46 196
9 TraesCS5D01G445100 chr5A 90.833 120 6 5 2550 2669 619691260 619691374 6.370000e-34 156
10 TraesCS5D01G445100 chr5B 93.806 1340 58 10 2663 3988 612681759 612683087 0.000000e+00 1991
11 TraesCS5D01G445100 chr5B 83.985 1074 121 22 1693 2720 612680498 612681566 0.000000e+00 983
12 TraesCS5D01G445100 chr5B 90.654 535 37 8 976 1503 612679724 612680252 0.000000e+00 699
13 TraesCS5D01G445100 chr5B 96.262 214 7 1 2584 2797 612681542 612681754 2.720000e-92 350
14 TraesCS5D01G445100 chr5B 92.254 142 6 2 2584 2720 612681464 612681605 3.750000e-46 196
15 TraesCS5D01G445100 chr5B 91.549 142 7 2 2584 2720 612681503 612681644 1.750000e-44 191
16 TraesCS5D01G445100 chr5B 82.128 235 15 16 1 224 612678853 612679071 4.890000e-40 176
17 TraesCS5D01G445100 chr5B 83.978 181 13 8 592 771 612679190 612679355 4.920000e-35 159
18 TraesCS5D01G445100 chr5B 95.349 86 1 2 2584 2669 612681581 612681663 2.980000e-27 134
19 TraesCS5D01G445100 chr3D 79.399 898 127 34 983 1864 579610035 579610890 8.860000e-162 580
20 TraesCS5D01G445100 chr3D 79.208 909 131 36 982 1873 120908285 120909152 3.190000e-161 579
21 TraesCS5D01G445100 chr1D 79.422 899 124 33 983 1864 417544209 417545063 3.190000e-161 579
22 TraesCS5D01G445100 chr2B 76.780 913 143 42 982 1867 182553008 182552138 9.380000e-122 448
23 TraesCS5D01G445100 chr7B 76.633 903 152 36 983 1870 59233548 59234406 1.210000e-120 444
24 TraesCS5D01G445100 chr2D 78.319 452 89 9 2997 3442 37612935 37613383 2.800000e-72 283
25 TraesCS5D01G445100 chr2A 77.655 452 92 9 2997 3442 42475204 42475652 2.820000e-67 267
26 TraesCS5D01G445100 chr4A 84.109 258 34 6 1072 1327 19622536 19622284 4.750000e-60 243
27 TraesCS5D01G445100 chr4D 85.470 234 30 4 1072 1303 447639109 447639340 1.710000e-59 241
28 TraesCS5D01G445100 chr4B 85.714 231 29 4 1072 1300 560012805 560013033 1.710000e-59 241
29 TraesCS5D01G445100 chr3B 86.592 179 24 0 1689 1867 569130800 569130622 1.040000e-46 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G445100 chr5D 495625125 495629876 4751 False 2757.666667 7707 97.674333 1 4752 3 chr5D.!!$F1 4751
1 TraesCS5D01G445100 chr5A 619688384 619693609 5225 False 654.000000 2911 88.030000 1 4751 7 chr5A.!!$F1 4750
2 TraesCS5D01G445100 chr5B 612678853 612683087 4234 False 542.111111 1991 89.996111 1 3988 9 chr5B.!!$F1 3987
3 TraesCS5D01G445100 chr3D 579610035 579610890 855 False 580.000000 580 79.399000 983 1864 1 chr3D.!!$F2 881
4 TraesCS5D01G445100 chr3D 120908285 120909152 867 False 579.000000 579 79.208000 982 1873 1 chr3D.!!$F1 891
5 TraesCS5D01G445100 chr1D 417544209 417545063 854 False 579.000000 579 79.422000 983 1864 1 chr1D.!!$F1 881
6 TraesCS5D01G445100 chr2B 182552138 182553008 870 True 448.000000 448 76.780000 982 1867 1 chr2B.!!$R1 885
7 TraesCS5D01G445100 chr7B 59233548 59234406 858 False 444.000000 444 76.633000 983 1870 1 chr7B.!!$F1 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 240 0.035056 CTTGGCCTCGAAGGATGGTT 60.035 55.0 3.32 0.00 37.67 3.67 F
701 772 0.108138 CTTCCGGGGGATCGCATATC 60.108 60.0 12.32 0.00 0.00 1.63 F
955 1690 0.178975 CCTATCTCTCGTGCCTCCCT 60.179 60.0 0.00 0.00 0.00 4.20 F
1376 2184 0.240945 GATTGGTTGGTTGACGCCAG 59.759 55.0 0.00 0.00 40.01 4.85 F
1614 2459 0.250901 GGGTCTCACAGTGGCATTGT 60.251 55.0 10.11 10.11 0.00 2.71 F
1619 2464 0.467844 TCACAGTGGCATTGTGGCTT 60.468 50.0 33.60 3.92 44.63 4.35 F
2445 3496 0.249280 GTTTTGGGGAGGTTTGTGCG 60.249 55.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 2122 0.243095 GCAAAGCAGCAAGGAGAAGG 59.757 55.000 0.0 0.0 0.00 3.46 R
2426 3477 0.249280 CGCACAAACCTCCCCAAAAC 60.249 55.000 0.0 0.0 0.00 2.43 R
2427 3478 0.684805 ACGCACAAACCTCCCCAAAA 60.685 50.000 0.0 0.0 0.00 2.44 R
2432 3483 0.818040 ACTCAACGCACAAACCTCCC 60.818 55.000 0.0 0.0 0.00 4.30 R
2433 3484 1.021968 AACTCAACGCACAAACCTCC 58.978 50.000 0.0 0.0 0.00 4.30 R
3442 4825 1.068083 AGTGCCCATGCTATCGACG 59.932 57.895 0.0 0.0 38.71 5.12 R
3993 5378 0.248012 TCCCTCGTAATCGCAAGCAA 59.752 50.000 0.0 0.0 36.96 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.112950 GAGCTAGCTAGGGTTTCGGT 58.887 55.000 19.38 0.37 0.00 4.69
74 75 0.824759 AGCTAGCTAGGGTTTCGGTG 59.175 55.000 17.69 0.00 0.00 4.94
77 78 0.041535 TAGCTAGGGTTTCGGTGGGA 59.958 55.000 0.00 0.00 0.00 4.37
80 81 0.616679 CTAGGGTTTCGGTGGGAGGA 60.617 60.000 0.00 0.00 0.00 3.71
86 91 2.486410 TTTCGGTGGGAGGAGGGGAT 62.486 60.000 0.00 0.00 0.00 3.85
133 140 2.665185 AGTTGGGCACGCTTCGTC 60.665 61.111 0.00 0.00 38.32 4.20
134 141 2.665185 GTTGGGCACGCTTCGTCT 60.665 61.111 0.00 0.00 38.32 4.18
135 142 2.357034 TTGGGCACGCTTCGTCTC 60.357 61.111 0.00 0.00 38.32 3.36
136 143 2.867855 TTGGGCACGCTTCGTCTCT 61.868 57.895 0.00 0.00 38.32 3.10
137 144 2.507324 GGGCACGCTTCGTCTCTC 60.507 66.667 0.00 0.00 38.32 3.20
139 146 1.080434 GGCACGCTTCGTCTCTCTT 60.080 57.895 0.00 0.00 38.32 2.85
140 147 1.347817 GGCACGCTTCGTCTCTCTTG 61.348 60.000 0.00 0.00 38.32 3.02
141 148 1.347817 GCACGCTTCGTCTCTCTTGG 61.348 60.000 0.00 0.00 38.32 3.61
144 151 0.523966 CGCTTCGTCTCTCTTGGTCT 59.476 55.000 0.00 0.00 0.00 3.85
146 153 2.333014 GCTTCGTCTCTCTTGGTCTTG 58.667 52.381 0.00 0.00 0.00 3.02
147 154 2.928731 GCTTCGTCTCTCTTGGTCTTGG 60.929 54.545 0.00 0.00 0.00 3.61
148 155 1.257743 TCGTCTCTCTTGGTCTTGGG 58.742 55.000 0.00 0.00 0.00 4.12
150 157 0.615850 GTCTCTCTTGGTCTTGGGGG 59.384 60.000 0.00 0.00 0.00 5.40
151 158 0.491823 TCTCTCTTGGTCTTGGGGGA 59.508 55.000 0.00 0.00 0.00 4.81
152 159 1.081174 TCTCTCTTGGTCTTGGGGGAT 59.919 52.381 0.00 0.00 0.00 3.85
155 162 0.178846 TCTTGGTCTTGGGGGATGGA 60.179 55.000 0.00 0.00 0.00 3.41
156 163 0.929244 CTTGGTCTTGGGGGATGGAT 59.071 55.000 0.00 0.00 0.00 3.41
158 165 0.552367 TGGTCTTGGGGGATGGATGT 60.552 55.000 0.00 0.00 0.00 3.06
159 166 0.106519 GGTCTTGGGGGATGGATGTG 60.107 60.000 0.00 0.00 0.00 3.21
160 167 0.625849 GTCTTGGGGGATGGATGTGT 59.374 55.000 0.00 0.00 0.00 3.72
161 168 1.843851 GTCTTGGGGGATGGATGTGTA 59.156 52.381 0.00 0.00 0.00 2.90
224 235 2.927856 TGCCTTGGCCTCGAAGGA 60.928 61.111 21.63 6.49 42.44 3.36
229 240 0.035056 CTTGGCCTCGAAGGATGGTT 60.035 55.000 3.32 0.00 37.67 3.67
230 241 1.209504 CTTGGCCTCGAAGGATGGTTA 59.790 52.381 3.32 0.00 37.67 2.85
231 242 1.281419 TGGCCTCGAAGGATGGTTAA 58.719 50.000 3.32 0.00 37.67 2.01
232 243 1.631388 TGGCCTCGAAGGATGGTTAAA 59.369 47.619 3.32 0.00 37.67 1.52
236 247 3.369576 GCCTCGAAGGATGGTTAAAGACT 60.370 47.826 5.24 0.00 37.67 3.24
237 248 4.434520 CCTCGAAGGATGGTTAAAGACTC 58.565 47.826 0.00 0.00 37.67 3.36
238 249 4.160626 CCTCGAAGGATGGTTAAAGACTCT 59.839 45.833 0.00 0.00 37.67 3.24
239 250 5.337652 CCTCGAAGGATGGTTAAAGACTCTT 60.338 44.000 0.00 0.00 37.67 2.85
636 702 4.086178 CGTCGCGTCTCTGTCCGT 62.086 66.667 5.77 0.00 0.00 4.69
637 703 2.202324 GTCGCGTCTCTGTCCGTC 60.202 66.667 5.77 0.00 0.00 4.79
640 706 2.486042 GCGTCTCTGTCCGTCCTC 59.514 66.667 0.00 0.00 0.00 3.71
641 707 2.041686 GCGTCTCTGTCCGTCCTCT 61.042 63.158 0.00 0.00 0.00 3.69
642 708 1.984321 GCGTCTCTGTCCGTCCTCTC 61.984 65.000 0.00 0.00 0.00 3.20
643 709 0.391927 CGTCTCTGTCCGTCCTCTCT 60.392 60.000 0.00 0.00 0.00 3.10
644 710 1.091537 GTCTCTGTCCGTCCTCTCTG 58.908 60.000 0.00 0.00 0.00 3.35
645 711 0.984995 TCTCTGTCCGTCCTCTCTGA 59.015 55.000 0.00 0.00 0.00 3.27
646 712 1.562008 TCTCTGTCCGTCCTCTCTGAT 59.438 52.381 0.00 0.00 0.00 2.90
647 713 1.946768 CTCTGTCCGTCCTCTCTGATC 59.053 57.143 0.00 0.00 0.00 2.92
648 714 0.660488 CTGTCCGTCCTCTCTGATCG 59.340 60.000 0.00 0.00 0.00 3.69
649 715 0.748367 TGTCCGTCCTCTCTGATCGG 60.748 60.000 0.00 0.00 42.12 4.18
650 716 0.464013 GTCCGTCCTCTCTGATCGGA 60.464 60.000 3.71 3.71 46.14 4.55
651 717 0.255033 TCCGTCCTCTCTGATCGGAA 59.745 55.000 5.58 0.00 45.52 4.30
668 734 1.903183 GGAAGGAGAGGATAATCCCCG 59.097 57.143 0.00 0.00 37.19 5.73
673 739 3.607370 GAGGATAATCCCCGCGCCC 62.607 68.421 0.00 0.00 37.19 6.13
698 769 4.256180 GCTTCCGGGGGATCGCAT 62.256 66.667 12.32 0.00 31.67 4.73
699 770 2.879233 GCTTCCGGGGGATCGCATA 61.879 63.158 12.32 0.00 31.67 3.14
700 771 1.983224 CTTCCGGGGGATCGCATAT 59.017 57.895 12.32 0.00 0.00 1.78
701 772 0.108138 CTTCCGGGGGATCGCATATC 60.108 60.000 12.32 0.00 0.00 1.63
743 1346 2.362375 TTCCATCCCCAAAGCGGC 60.362 61.111 0.00 0.00 0.00 6.53
765 1368 2.443390 TGCTACGGCTACTCCCCC 60.443 66.667 0.00 0.00 39.59 5.40
766 1369 2.123382 GCTACGGCTACTCCCCCT 60.123 66.667 0.00 0.00 35.22 4.79
767 1370 2.201708 GCTACGGCTACTCCCCCTC 61.202 68.421 0.00 0.00 35.22 4.30
773 1386 3.763757 CTACTCCCCCTCCCCCGT 61.764 72.222 0.00 0.00 0.00 5.28
783 1396 2.038329 TCCCCCGTCACCTACCTG 59.962 66.667 0.00 0.00 0.00 4.00
787 1400 2.264794 CCGTCACCTACCTGCCAC 59.735 66.667 0.00 0.00 0.00 5.01
788 1401 2.264794 CGTCACCTACCTGCCACC 59.735 66.667 0.00 0.00 0.00 4.61
791 1404 1.612442 TCACCTACCTGCCACCCTC 60.612 63.158 0.00 0.00 0.00 4.30
792 1405 2.683933 ACCTACCTGCCACCCTCG 60.684 66.667 0.00 0.00 0.00 4.63
795 1408 2.687200 TACCTGCCACCCTCGCAT 60.687 61.111 0.00 0.00 35.25 4.73
798 1411 4.864334 CTGCCACCCTCGCATCCC 62.864 72.222 0.00 0.00 35.25 3.85
801 1414 3.492353 CCACCCTCGCATCCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
802 1415 2.111878 CACCCTCGCATCCCCATC 59.888 66.667 0.00 0.00 0.00 3.51
804 1454 2.851102 CCCTCGCATCCCCATCCT 60.851 66.667 0.00 0.00 0.00 3.24
810 1460 2.533463 GCATCCCCATCCTCCCTCC 61.533 68.421 0.00 0.00 0.00 4.30
811 1461 1.073474 CATCCCCATCCTCCCTCCA 60.073 63.158 0.00 0.00 0.00 3.86
814 1464 2.041922 CCCATCCTCCCTCCACGA 60.042 66.667 0.00 0.00 0.00 4.35
817 1467 1.476007 CCATCCTCCCTCCACGATCC 61.476 65.000 0.00 0.00 0.00 3.36
821 1471 1.528292 CCTCCCTCCACGATCCGATC 61.528 65.000 0.00 0.00 0.00 3.69
824 1474 1.832608 CCTCCACGATCCGATCCCA 60.833 63.158 2.69 0.00 0.00 4.37
827 1477 0.469144 TCCACGATCCGATCCCATCA 60.469 55.000 2.69 0.00 0.00 3.07
828 1478 0.392706 CCACGATCCGATCCCATCAA 59.607 55.000 2.69 0.00 0.00 2.57
830 1480 1.069204 CACGATCCGATCCCATCAACT 59.931 52.381 2.69 0.00 0.00 3.16
831 1481 1.341531 ACGATCCGATCCCATCAACTC 59.658 52.381 2.69 0.00 0.00 3.01
832 1482 1.341209 CGATCCGATCCCATCAACTCA 59.659 52.381 2.69 0.00 0.00 3.41
833 1483 2.224042 CGATCCGATCCCATCAACTCAA 60.224 50.000 2.69 0.00 0.00 3.02
835 1485 2.187958 TCCGATCCCATCAACTCAACT 58.812 47.619 0.00 0.00 0.00 3.16
836 1486 2.093500 TCCGATCCCATCAACTCAACTG 60.093 50.000 0.00 0.00 0.00 3.16
838 1488 2.355108 CGATCCCATCAACTCAACTGGT 60.355 50.000 0.00 0.00 0.00 4.00
839 1489 2.566833 TCCCATCAACTCAACTGGTG 57.433 50.000 0.00 0.00 0.00 4.17
841 1491 0.883833 CCATCAACTCAACTGGTGGC 59.116 55.000 0.00 0.00 38.22 5.01
842 1492 0.518636 CATCAACTCAACTGGTGGCG 59.481 55.000 0.00 0.00 0.00 5.69
844 1494 2.972505 AACTCAACTGGTGGCGCG 60.973 61.111 0.00 0.00 0.00 6.86
865 1520 2.779951 CTTCACGGTGATCACGCCCA 62.780 60.000 19.33 1.08 43.10 5.36
890 1545 4.389576 CTTGCTTGCGCCCGTGTC 62.390 66.667 4.18 0.00 34.43 3.67
891 1546 4.927782 TTGCTTGCGCCCGTGTCT 62.928 61.111 4.18 0.00 34.43 3.41
916 1651 2.418083 GCCCATTCCTCCGCCTTTG 61.418 63.158 0.00 0.00 0.00 2.77
918 1653 1.032114 CCCATTCCTCCGCCTTTGTC 61.032 60.000 0.00 0.00 0.00 3.18
919 1654 0.322456 CCATTCCTCCGCCTTTGTCA 60.322 55.000 0.00 0.00 0.00 3.58
921 1656 0.693049 ATTCCTCCGCCTTTGTCACT 59.307 50.000 0.00 0.00 0.00 3.41
922 1657 0.472471 TTCCTCCGCCTTTGTCACTT 59.528 50.000 0.00 0.00 0.00 3.16
924 1659 0.535102 CCTCCGCCTTTGTCACTTGT 60.535 55.000 0.00 0.00 0.00 3.16
925 1660 1.270625 CCTCCGCCTTTGTCACTTGTA 60.271 52.381 0.00 0.00 0.00 2.41
926 1661 2.615493 CCTCCGCCTTTGTCACTTGTAT 60.615 50.000 0.00 0.00 0.00 2.29
927 1662 3.074412 CTCCGCCTTTGTCACTTGTATT 58.926 45.455 0.00 0.00 0.00 1.89
928 1663 3.482436 TCCGCCTTTGTCACTTGTATTT 58.518 40.909 0.00 0.00 0.00 1.40
929 1664 4.643463 TCCGCCTTTGTCACTTGTATTTA 58.357 39.130 0.00 0.00 0.00 1.40
931 1666 4.214545 CCGCCTTTGTCACTTGTATTTACA 59.785 41.667 0.00 0.00 0.00 2.41
932 1667 5.106317 CCGCCTTTGTCACTTGTATTTACAT 60.106 40.000 0.00 0.00 35.89 2.29
933 1668 6.021596 CGCCTTTGTCACTTGTATTTACATC 58.978 40.000 0.00 0.00 35.89 3.06
934 1669 6.322491 GCCTTTGTCACTTGTATTTACATCC 58.678 40.000 0.00 0.00 35.89 3.51
938 1673 4.538490 TGTCACTTGTATTTACATCCCCCT 59.462 41.667 0.00 0.00 35.89 4.79
939 1674 5.727279 TGTCACTTGTATTTACATCCCCCTA 59.273 40.000 0.00 0.00 35.89 3.53
941 1676 6.935208 GTCACTTGTATTTACATCCCCCTATC 59.065 42.308 0.00 0.00 35.89 2.08
942 1677 6.849697 TCACTTGTATTTACATCCCCCTATCT 59.150 38.462 0.00 0.00 35.89 1.98
944 1679 7.016661 CACTTGTATTTACATCCCCCTATCTCT 59.983 40.741 0.00 0.00 35.89 3.10
946 1681 5.715279 TGTATTTACATCCCCCTATCTCTCG 59.285 44.000 0.00 0.00 0.00 4.04
947 1682 3.897657 TTACATCCCCCTATCTCTCGT 57.102 47.619 0.00 0.00 0.00 4.18
951 1686 1.152440 CCCCCTATCTCTCGTGCCT 60.152 63.158 0.00 0.00 0.00 4.75
953 1688 1.182385 CCCCTATCTCTCGTGCCTCC 61.182 65.000 0.00 0.00 0.00 4.30
954 1689 1.182385 CCCTATCTCTCGTGCCTCCC 61.182 65.000 0.00 0.00 0.00 4.30
955 1690 0.178975 CCTATCTCTCGTGCCTCCCT 60.179 60.000 0.00 0.00 0.00 4.20
956 1691 0.958091 CTATCTCTCGTGCCTCCCTG 59.042 60.000 0.00 0.00 0.00 4.45
957 1692 1.109920 TATCTCTCGTGCCTCCCTGC 61.110 60.000 0.00 0.00 0.00 4.85
958 1693 4.154347 CTCTCGTGCCTCCCTGCC 62.154 72.222 0.00 0.00 0.00 4.85
1309 2117 6.963083 ACACCTATGTAAGTATCAGACCTC 57.037 41.667 0.00 0.00 37.26 3.85
1310 2118 6.674573 ACACCTATGTAAGTATCAGACCTCT 58.325 40.000 0.00 0.00 37.26 3.69
1311 2119 6.773685 ACACCTATGTAAGTATCAGACCTCTC 59.226 42.308 0.00 0.00 37.26 3.20
1312 2120 6.207810 CACCTATGTAAGTATCAGACCTCTCC 59.792 46.154 0.00 0.00 0.00 3.71
1313 2121 5.712917 CCTATGTAAGTATCAGACCTCTCCC 59.287 48.000 0.00 0.00 0.00 4.30
1314 2122 3.912248 TGTAAGTATCAGACCTCTCCCC 58.088 50.000 0.00 0.00 0.00 4.81
1315 2123 2.480642 AAGTATCAGACCTCTCCCCC 57.519 55.000 0.00 0.00 0.00 5.40
1316 2124 1.626621 AGTATCAGACCTCTCCCCCT 58.373 55.000 0.00 0.00 0.00 4.79
1317 2125 1.940957 AGTATCAGACCTCTCCCCCTT 59.059 52.381 0.00 0.00 0.00 3.95
1366 2174 6.762661 CCTTTATGCCTAAATTGATTGGTTGG 59.237 38.462 0.00 0.00 0.00 3.77
1371 2179 4.929211 GCCTAAATTGATTGGTTGGTTGAC 59.071 41.667 0.00 0.00 0.00 3.18
1376 2184 0.240945 GATTGGTTGGTTGACGCCAG 59.759 55.000 0.00 0.00 40.01 4.85
1382 2190 1.723608 TTGGTTGACGCCAGTTGCTG 61.724 55.000 0.00 0.00 40.01 4.41
1425 2236 3.719871 TGACTGGAGCTTGGGATTACTA 58.280 45.455 0.00 0.00 0.00 1.82
1451 2266 0.387202 CTGGAGTATCTGCTCACCCG 59.613 60.000 0.00 0.00 37.24 5.28
1472 2288 5.451798 CCCGGGGATTACTGAAATTTTGATG 60.452 44.000 14.71 0.00 0.00 3.07
1503 2319 0.601558 GCCTCGTGTTCACAGTCCTA 59.398 55.000 3.87 0.00 0.00 2.94
1521 2361 2.094182 CCTAGCGGCTCTAGTTCACAAA 60.094 50.000 5.39 0.00 42.57 2.83
1524 2364 2.561419 AGCGGCTCTAGTTCACAAAGTA 59.439 45.455 0.00 0.00 0.00 2.24
1535 2375 1.922447 TCACAAAGTATGGCAGGGGAT 59.078 47.619 0.00 0.00 0.00 3.85
1538 2378 2.515429 ACAAAGTATGGCAGGGGATCAT 59.485 45.455 0.00 0.00 0.00 2.45
1539 2379 3.052642 ACAAAGTATGGCAGGGGATCATT 60.053 43.478 0.00 0.00 0.00 2.57
1554 2394 7.551974 CAGGGGATCATTGACATATGAATAGAC 59.448 40.741 10.38 0.00 38.01 2.59
1559 2399 9.499479 GATCATTGACATATGAATAGACCAAGT 57.501 33.333 10.38 0.00 38.01 3.16
1580 2420 8.037758 CCAAGTTAGTTAGAGAGTGATTGACAT 58.962 37.037 0.00 0.00 0.00 3.06
1598 2443 1.354368 CATCACTAGTGGTTTGGGGGT 59.646 52.381 22.48 0.00 0.00 4.95
1599 2444 1.061546 TCACTAGTGGTTTGGGGGTC 58.938 55.000 22.48 0.00 0.00 4.46
1614 2459 0.250901 GGGTCTCACAGTGGCATTGT 60.251 55.000 10.11 10.11 0.00 2.71
1619 2464 0.467844 TCACAGTGGCATTGTGGCTT 60.468 50.000 33.60 3.92 44.63 4.35
1621 2466 0.467844 ACAGTGGCATTGTGGCTTGA 60.468 50.000 15.31 0.00 44.10 3.02
1627 2473 1.340017 GGCATTGTGGCTTGAGGACTA 60.340 52.381 0.00 0.00 40.14 2.59
1630 2481 3.877559 CATTGTGGCTTGAGGACTATGA 58.122 45.455 0.00 0.00 0.00 2.15
1633 2484 2.111384 GTGGCTTGAGGACTATGAGGA 58.889 52.381 0.00 0.00 0.00 3.71
1638 2489 4.502950 GGCTTGAGGACTATGAGGATGAAG 60.503 50.000 0.00 0.00 0.00 3.02
1641 2492 4.871822 TGAGGACTATGAGGATGAAGACA 58.128 43.478 0.00 0.00 0.00 3.41
1649 2500 2.568956 TGAGGATGAAGACAAGGTCCAG 59.431 50.000 0.00 0.00 32.18 3.86
1651 2502 2.982488 AGGATGAAGACAAGGTCCAGTT 59.018 45.455 0.00 0.00 32.18 3.16
1652 2503 3.395941 AGGATGAAGACAAGGTCCAGTTT 59.604 43.478 0.00 0.00 32.18 2.66
1654 2505 2.297701 TGAAGACAAGGTCCAGTTTGC 58.702 47.619 0.00 0.00 32.18 3.68
1656 2507 1.972872 AGACAAGGTCCAGTTTGCAG 58.027 50.000 0.00 0.00 32.18 4.41
1657 2508 1.212935 AGACAAGGTCCAGTTTGCAGT 59.787 47.619 0.00 0.00 32.18 4.40
1659 2510 1.212935 ACAAGGTCCAGTTTGCAGTCT 59.787 47.619 0.00 0.00 0.00 3.24
1660 2511 2.438021 ACAAGGTCCAGTTTGCAGTCTA 59.562 45.455 0.00 0.00 0.00 2.59
1661 2512 3.118038 ACAAGGTCCAGTTTGCAGTCTAA 60.118 43.478 0.00 0.00 0.00 2.10
1662 2513 4.074970 CAAGGTCCAGTTTGCAGTCTAAT 58.925 43.478 0.00 0.00 0.00 1.73
1669 2520 7.769044 GGTCCAGTTTGCAGTCTAATTAATAGA 59.231 37.037 0.00 0.00 38.33 1.98
1824 2711 5.651139 GGATGATAGCCGATACTTGGTAGTA 59.349 44.000 0.00 0.00 40.96 1.82
1871 2759 7.869937 TGCAACAATTCATAAAAATTCTCGGAA 59.130 29.630 0.00 0.00 0.00 4.30
1889 2824 4.156190 TCGGAATCTACAGAGTCAGTTGAC 59.844 45.833 8.75 4.09 40.57 3.18
1935 2870 2.032178 CGATAACCTTAAAGCCAGCTGC 59.968 50.000 8.66 3.91 41.71 5.25
1951 2886 2.143122 GCTGCTAGTTTGTGTGTGCTA 58.857 47.619 0.00 0.00 0.00 3.49
1957 2892 7.265647 TGCTAGTTTGTGTGTGCTATTTTTA 57.734 32.000 0.00 0.00 0.00 1.52
2008 2944 7.068839 TCCTTGAATTAACCAAAGTTGCAAGTA 59.931 33.333 7.33 0.00 36.68 2.24
2023 2959 4.713553 TGCAAGTACTTGAGTCAAATCCA 58.286 39.130 34.43 18.35 42.93 3.41
2024 2960 5.316167 TGCAAGTACTTGAGTCAAATCCAT 58.684 37.500 34.43 0.00 42.93 3.41
2039 2975 9.614792 AGTCAAATCCATAACCTACAGAATTAC 57.385 33.333 0.00 0.00 0.00 1.89
2040 2976 8.837389 GTCAAATCCATAACCTACAGAATTACC 58.163 37.037 0.00 0.00 0.00 2.85
2126 3065 7.338800 AGTTGTGTTCTGAAATTGAAGATGT 57.661 32.000 0.00 0.00 0.00 3.06
2210 3242 5.364778 TGTTTGTTATGCTACTGTCTGTGT 58.635 37.500 0.00 0.00 0.00 3.72
2211 3243 5.820423 TGTTTGTTATGCTACTGTCTGTGTT 59.180 36.000 0.00 0.00 0.00 3.32
2212 3244 5.922739 TTGTTATGCTACTGTCTGTGTTG 57.077 39.130 0.00 0.00 0.00 3.33
2213 3245 3.745975 TGTTATGCTACTGTCTGTGTTGC 59.254 43.478 0.00 0.00 36.87 4.17
2214 3246 1.813513 ATGCTACTGTCTGTGTTGCC 58.186 50.000 0.00 0.00 35.83 4.52
2215 3247 0.758734 TGCTACTGTCTGTGTTGCCT 59.241 50.000 0.00 0.00 35.83 4.75
2216 3248 1.151668 GCTACTGTCTGTGTTGCCTG 58.848 55.000 0.00 0.00 31.84 4.85
2217 3249 1.541233 GCTACTGTCTGTGTTGCCTGT 60.541 52.381 0.00 0.00 31.84 4.00
2218 3250 2.288825 GCTACTGTCTGTGTTGCCTGTA 60.289 50.000 0.00 0.00 31.84 2.74
2219 3251 2.533266 ACTGTCTGTGTTGCCTGTAG 57.467 50.000 0.00 0.00 0.00 2.74
2220 3252 1.762957 ACTGTCTGTGTTGCCTGTAGT 59.237 47.619 0.00 0.00 0.00 2.73
2221 3253 2.963101 ACTGTCTGTGTTGCCTGTAGTA 59.037 45.455 0.00 0.00 0.00 1.82
2222 3254 3.005897 ACTGTCTGTGTTGCCTGTAGTAG 59.994 47.826 0.00 0.00 0.00 2.57
2223 3255 3.227614 TGTCTGTGTTGCCTGTAGTAGA 58.772 45.455 0.00 0.00 0.00 2.59
2224 3256 3.639561 TGTCTGTGTTGCCTGTAGTAGAA 59.360 43.478 0.00 0.00 0.00 2.10
2225 3257 4.100344 TGTCTGTGTTGCCTGTAGTAGAAA 59.900 41.667 0.00 0.00 0.00 2.52
2226 3258 5.054477 GTCTGTGTTGCCTGTAGTAGAAAA 58.946 41.667 0.00 0.00 0.00 2.29
2227 3259 5.526111 GTCTGTGTTGCCTGTAGTAGAAAAA 59.474 40.000 0.00 0.00 0.00 1.94
2228 3260 6.204882 GTCTGTGTTGCCTGTAGTAGAAAAAT 59.795 38.462 0.00 0.00 0.00 1.82
2229 3261 6.770785 TCTGTGTTGCCTGTAGTAGAAAAATT 59.229 34.615 0.00 0.00 0.00 1.82
2230 3262 6.734137 TGTGTTGCCTGTAGTAGAAAAATTG 58.266 36.000 0.00 0.00 0.00 2.32
2231 3263 6.544197 TGTGTTGCCTGTAGTAGAAAAATTGA 59.456 34.615 0.00 0.00 0.00 2.57
2232 3264 7.230510 TGTGTTGCCTGTAGTAGAAAAATTGAT 59.769 33.333 0.00 0.00 0.00 2.57
2233 3265 8.726988 GTGTTGCCTGTAGTAGAAAAATTGATA 58.273 33.333 0.00 0.00 0.00 2.15
2234 3266 9.461312 TGTTGCCTGTAGTAGAAAAATTGATAT 57.539 29.630 0.00 0.00 0.00 1.63
2247 3279 9.571816 AGAAAAATTGATATTTTGGCCAAAAGA 57.428 25.926 38.50 36.16 41.83 2.52
2256 3288 5.867903 TTTTGGCCAAAAGATCAGAAAGA 57.132 34.783 34.56 12.62 35.57 2.52
2257 3289 5.458041 TTTGGCCAAAAGATCAGAAAGAG 57.542 39.130 28.57 0.00 0.00 2.85
2258 3290 4.104383 TGGCCAAAAGATCAGAAAGAGT 57.896 40.909 0.61 0.00 0.00 3.24
2259 3291 5.241403 TGGCCAAAAGATCAGAAAGAGTA 57.759 39.130 0.61 0.00 0.00 2.59
2260 3292 5.630121 TGGCCAAAAGATCAGAAAGAGTAA 58.370 37.500 0.61 0.00 0.00 2.24
2261 3293 5.707298 TGGCCAAAAGATCAGAAAGAGTAAG 59.293 40.000 0.61 0.00 0.00 2.34
2262 3294 5.940470 GGCCAAAAGATCAGAAAGAGTAAGA 59.060 40.000 0.00 0.00 0.00 2.10
2263 3295 6.093357 GGCCAAAAGATCAGAAAGAGTAAGAG 59.907 42.308 0.00 0.00 0.00 2.85
2264 3296 6.876257 GCCAAAAGATCAGAAAGAGTAAGAGA 59.124 38.462 0.00 0.00 0.00 3.10
2265 3297 7.064490 GCCAAAAGATCAGAAAGAGTAAGAGAG 59.936 40.741 0.00 0.00 0.00 3.20
2266 3298 7.548780 CCAAAAGATCAGAAAGAGTAAGAGAGG 59.451 40.741 0.00 0.00 0.00 3.69
2267 3299 8.310382 CAAAAGATCAGAAAGAGTAAGAGAGGA 58.690 37.037 0.00 0.00 0.00 3.71
2268 3300 8.429237 AAAGATCAGAAAGAGTAAGAGAGGAA 57.571 34.615 0.00 0.00 0.00 3.36
2269 3301 7.645058 AGATCAGAAAGAGTAAGAGAGGAAG 57.355 40.000 0.00 0.00 0.00 3.46
2270 3302 7.182060 AGATCAGAAAGAGTAAGAGAGGAAGT 58.818 38.462 0.00 0.00 0.00 3.01
2271 3303 8.333235 AGATCAGAAAGAGTAAGAGAGGAAGTA 58.667 37.037 0.00 0.00 0.00 2.24
2272 3304 9.131791 GATCAGAAAGAGTAAGAGAGGAAGTAT 57.868 37.037 0.00 0.00 0.00 2.12
2273 3305 8.287439 TCAGAAAGAGTAAGAGAGGAAGTATG 57.713 38.462 0.00 0.00 0.00 2.39
2274 3306 7.340743 TCAGAAAGAGTAAGAGAGGAAGTATGG 59.659 40.741 0.00 0.00 0.00 2.74
2275 3307 7.123547 CAGAAAGAGTAAGAGAGGAAGTATGGT 59.876 40.741 0.00 0.00 0.00 3.55
2276 3308 8.337739 AGAAAGAGTAAGAGAGGAAGTATGGTA 58.662 37.037 0.00 0.00 0.00 3.25
2277 3309 9.138596 GAAAGAGTAAGAGAGGAAGTATGGTAT 57.861 37.037 0.00 0.00 0.00 2.73
2278 3310 8.472007 AAGAGTAAGAGAGGAAGTATGGTATG 57.528 38.462 0.00 0.00 0.00 2.39
2279 3311 7.588169 AGAGTAAGAGAGGAAGTATGGTATGT 58.412 38.462 0.00 0.00 0.00 2.29
2280 3312 8.062536 AGAGTAAGAGAGGAAGTATGGTATGTT 58.937 37.037 0.00 0.00 0.00 2.71
2281 3313 9.352191 GAGTAAGAGAGGAAGTATGGTATGTTA 57.648 37.037 0.00 0.00 0.00 2.41
2282 3314 9.357161 AGTAAGAGAGGAAGTATGGTATGTTAG 57.643 37.037 0.00 0.00 0.00 2.34
2283 3315 9.134055 GTAAGAGAGGAAGTATGGTATGTTAGT 57.866 37.037 0.00 0.00 0.00 2.24
2284 3316 7.589958 AGAGAGGAAGTATGGTATGTTAGTG 57.410 40.000 0.00 0.00 0.00 2.74
2285 3317 7.126733 AGAGAGGAAGTATGGTATGTTAGTGT 58.873 38.462 0.00 0.00 0.00 3.55
2286 3318 7.285858 AGAGAGGAAGTATGGTATGTTAGTGTC 59.714 40.741 0.00 0.00 0.00 3.67
2287 3319 7.126733 AGAGGAAGTATGGTATGTTAGTGTCT 58.873 38.462 0.00 0.00 0.00 3.41
2288 3320 8.280084 AGAGGAAGTATGGTATGTTAGTGTCTA 58.720 37.037 0.00 0.00 0.00 2.59
2289 3321 9.080097 GAGGAAGTATGGTATGTTAGTGTCTAT 57.920 37.037 0.00 0.00 0.00 1.98
2290 3322 8.861086 AGGAAGTATGGTATGTTAGTGTCTATG 58.139 37.037 0.00 0.00 0.00 2.23
2291 3323 8.639761 GGAAGTATGGTATGTTAGTGTCTATGT 58.360 37.037 0.00 0.00 0.00 2.29
2295 3327 9.257651 GTATGGTATGTTAGTGTCTATGTTTCC 57.742 37.037 0.00 0.00 0.00 3.13
2296 3328 7.490657 TGGTATGTTAGTGTCTATGTTTCCT 57.509 36.000 0.00 0.00 0.00 3.36
2297 3329 7.553334 TGGTATGTTAGTGTCTATGTTTCCTC 58.447 38.462 0.00 0.00 0.00 3.71
2298 3330 7.399191 TGGTATGTTAGTGTCTATGTTTCCTCT 59.601 37.037 0.00 0.00 0.00 3.69
2299 3331 8.910944 GGTATGTTAGTGTCTATGTTTCCTCTA 58.089 37.037 0.00 0.00 0.00 2.43
2315 3347 4.149598 TCCTCTAGTAGCATTGCCGATAA 58.850 43.478 4.70 0.00 0.00 1.75
2322 3354 1.032014 GCATTGCCGATAATGTGGGT 58.968 50.000 0.00 0.00 39.62 4.51
2323 3355 1.408702 GCATTGCCGATAATGTGGGTT 59.591 47.619 0.00 0.00 39.62 4.11
2324 3356 2.621055 GCATTGCCGATAATGTGGGTTA 59.379 45.455 0.00 0.00 39.62 2.85
2325 3357 3.255642 GCATTGCCGATAATGTGGGTTAT 59.744 43.478 0.00 0.00 39.62 1.89
2327 3359 5.460646 CATTGCCGATAATGTGGGTTATTC 58.539 41.667 4.14 0.00 34.21 1.75
2328 3360 4.431416 TGCCGATAATGTGGGTTATTCT 57.569 40.909 0.00 0.00 0.00 2.40
2329 3361 4.385825 TGCCGATAATGTGGGTTATTCTC 58.614 43.478 0.00 0.00 0.00 2.87
2334 3366 8.038944 GCCGATAATGTGGGTTATTCTCTTATA 58.961 37.037 0.00 0.00 0.00 0.98
2373 3414 1.745232 AGTTGCGTGTGTTGGAAGAA 58.255 45.000 0.00 0.00 0.00 2.52
2376 3417 1.454201 TGCGTGTGTTGGAAGAACAA 58.546 45.000 0.00 0.00 31.20 2.83
2379 3420 2.788786 GCGTGTGTTGGAAGAACAAATG 59.211 45.455 0.00 0.00 31.17 2.32
2402 3443 6.757237 TGTTACAGGATGATTGTTGCATTTT 58.243 32.000 0.00 0.00 39.69 1.82
2403 3454 7.215789 TGTTACAGGATGATTGTTGCATTTTT 58.784 30.769 0.00 0.00 39.69 1.94
2415 3466 5.841810 TGTTGCATTTTTAGGAGAACCTTG 58.158 37.500 0.00 0.00 45.36 3.61
2423 3474 9.987272 CATTTTTAGGAGAACCTTGAGATTTTT 57.013 29.630 0.00 0.00 45.36 1.94
2442 3493 4.642466 TTTTTGTTTTGGGGAGGTTTGT 57.358 36.364 0.00 0.00 0.00 2.83
2445 3496 0.249280 GTTTTGGGGAGGTTTGTGCG 60.249 55.000 0.00 0.00 0.00 5.34
2446 3497 0.684805 TTTTGGGGAGGTTTGTGCGT 60.685 50.000 0.00 0.00 0.00 5.24
2514 3568 1.265095 CATGTGTGCAGTCACCAACTC 59.735 52.381 5.11 0.00 42.46 3.01
2521 3575 1.198637 GCAGTCACCAACTCAATGCTC 59.801 52.381 0.00 0.00 35.45 4.26
2545 3602 4.100035 TCATGATGATGTTAGCTCCGAGTT 59.900 41.667 0.00 0.00 0.00 3.01
2549 3606 2.301870 TGATGTTAGCTCCGAGTTGGTT 59.698 45.455 0.00 0.00 39.52 3.67
2559 3616 4.062293 CTCCGAGTTGGTTTCACACATTA 58.938 43.478 0.00 0.00 39.52 1.90
2585 3642 6.352516 AGTTAGGCTATCACCTGATCTTTTG 58.647 40.000 5.46 0.00 41.34 2.44
2677 3817 5.833131 TGTTTGCCTTGAGTAAAATCTTCCT 59.167 36.000 0.00 0.00 31.40 3.36
2776 4008 9.567848 TTGACAAATAAAGTGAAGAACTGAAAC 57.432 29.630 0.00 0.00 39.81 2.78
2857 4228 8.261349 AGATATTCTTACAGGCTCATCTTCTT 57.739 34.615 0.00 0.00 0.00 2.52
2886 4269 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2901 4284 2.805099 CTCTCTCTGCCACTGTTGTTTC 59.195 50.000 0.00 0.00 0.00 2.78
2947 4330 5.705609 TGCTGTTGGATAAACCTTCTTTC 57.294 39.130 0.00 0.00 38.06 2.62
2986 4369 4.693566 TCCGATTTCTGACATGGTTGTTAC 59.306 41.667 0.00 0.00 35.79 2.50
3103 4486 2.674084 GCGCCGGAAACCTACACAC 61.674 63.158 5.05 0.00 0.00 3.82
3217 4600 2.354259 CTCTTGATGGCTGAAGTGGTC 58.646 52.381 0.00 0.00 0.00 4.02
3252 4635 1.334869 GCAACAGAACACAAGGTCAGG 59.665 52.381 0.00 0.00 0.00 3.86
3313 4696 1.366679 AGCAACAGCAGATGATGTCG 58.633 50.000 3.93 0.00 44.74 4.35
3341 4724 1.493950 GCGAGTCATGCAGAATCCCG 61.494 60.000 0.00 0.00 38.07 5.14
3343 4726 1.740380 CGAGTCATGCAGAATCCCGTT 60.740 52.381 0.00 0.00 38.07 4.44
3442 4825 2.671682 GACCAGGGACCTGAAGCC 59.328 66.667 19.65 2.31 46.30 4.35
3487 4870 1.687612 CCTGGAGCAAGGGTCACAT 59.312 57.895 0.00 0.00 33.28 3.21
3517 4900 2.996395 CAGCAGGAGCCAGTGGAT 59.004 61.111 15.20 6.44 43.56 3.41
3520 4903 1.203441 AGCAGGAGCCAGTGGATTCA 61.203 55.000 15.20 0.00 43.56 2.57
3521 4904 0.106819 GCAGGAGCCAGTGGATTCAT 60.107 55.000 15.20 4.24 33.58 2.57
3595 4978 0.250209 CTGAGGTGCAGCAGAGTGTT 60.250 55.000 19.63 0.00 37.90 3.32
3768 5151 4.034742 GGACTAGCTCTACTCGAAGAACAG 59.965 50.000 0.00 0.00 34.09 3.16
3776 5159 4.770531 TCTACTCGAAGAACAGGAATTCCA 59.229 41.667 26.22 1.20 34.94 3.53
3800 5183 7.201591 CCAGACAATAATCCATCGCATTCTATC 60.202 40.741 0.00 0.00 0.00 2.08
3812 5195 1.467678 ATTCTATCGCCGAGCAGCCT 61.468 55.000 0.00 0.00 0.00 4.58
3884 5269 0.904649 TCGGCCATGATCAGTCAGTT 59.095 50.000 2.24 0.00 37.87 3.16
3889 5274 2.676839 GCCATGATCAGTCAGTTGAGTG 59.323 50.000 10.09 10.09 44.69 3.51
3933 5318 6.825213 TGATGATGCCACCATATTATCTTAGC 59.175 38.462 0.00 0.00 0.00 3.09
3958 5343 3.126171 CGGTCTTATTTTCGTCAATGCCA 59.874 43.478 0.00 0.00 0.00 4.92
3964 5349 6.585702 TCTTATTTTCGTCAATGCCATGTTTG 59.414 34.615 0.00 0.00 0.00 2.93
3990 5375 4.467795 TCAACTTCTGGGAGGATTCTAGTG 59.532 45.833 0.00 0.00 0.00 2.74
3993 5378 1.651770 TCTGGGAGGATTCTAGTGGGT 59.348 52.381 0.00 0.00 0.00 4.51
3995 5380 2.171448 CTGGGAGGATTCTAGTGGGTTG 59.829 54.545 0.00 0.00 0.00 3.77
3996 5381 1.134068 GGGAGGATTCTAGTGGGTTGC 60.134 57.143 0.00 0.00 0.00 4.17
3997 5382 1.840635 GGAGGATTCTAGTGGGTTGCT 59.159 52.381 0.00 0.00 0.00 3.91
3999 5384 3.274288 GAGGATTCTAGTGGGTTGCTTG 58.726 50.000 0.00 0.00 0.00 4.01
4000 5385 1.745653 GGATTCTAGTGGGTTGCTTGC 59.254 52.381 0.00 0.00 0.00 4.01
4001 5386 1.398390 GATTCTAGTGGGTTGCTTGCG 59.602 52.381 0.00 0.00 0.00 4.85
4002 5387 0.394938 TTCTAGTGGGTTGCTTGCGA 59.605 50.000 0.00 0.00 0.00 5.10
4003 5388 0.613260 TCTAGTGGGTTGCTTGCGAT 59.387 50.000 0.00 0.00 0.00 4.58
4004 5389 1.003118 TCTAGTGGGTTGCTTGCGATT 59.997 47.619 0.00 0.00 0.00 3.34
4005 5390 2.235155 TCTAGTGGGTTGCTTGCGATTA 59.765 45.455 0.00 0.00 0.00 1.75
4006 5391 1.165270 AGTGGGTTGCTTGCGATTAC 58.835 50.000 0.00 0.00 0.00 1.89
4007 5392 0.179200 GTGGGTTGCTTGCGATTACG 60.179 55.000 0.00 0.00 42.93 3.18
4008 5393 0.320858 TGGGTTGCTTGCGATTACGA 60.321 50.000 0.00 0.00 42.66 3.43
4009 5394 0.373716 GGGTTGCTTGCGATTACGAG 59.626 55.000 0.00 0.00 42.66 4.18
4011 5396 0.373716 GTTGCTTGCGATTACGAGGG 59.626 55.000 0.00 0.00 42.66 4.30
4012 5397 0.248012 TTGCTTGCGATTACGAGGGA 59.752 50.000 0.00 0.00 42.66 4.20
4013 5398 0.464036 TGCTTGCGATTACGAGGGAT 59.536 50.000 0.00 0.00 42.66 3.85
4014 5399 1.140816 GCTTGCGATTACGAGGGATC 58.859 55.000 0.00 0.00 42.66 3.36
4015 5400 1.538204 GCTTGCGATTACGAGGGATCA 60.538 52.381 0.00 0.00 42.66 2.92
4016 5401 2.868044 GCTTGCGATTACGAGGGATCAT 60.868 50.000 0.00 0.00 42.66 2.45
4017 5402 2.724977 TGCGATTACGAGGGATCATC 57.275 50.000 0.00 0.00 42.66 2.92
4018 5403 2.239400 TGCGATTACGAGGGATCATCT 58.761 47.619 0.00 0.00 42.66 2.90
4019 5404 3.418047 TGCGATTACGAGGGATCATCTA 58.582 45.455 0.00 0.00 42.66 1.98
4020 5405 4.017126 TGCGATTACGAGGGATCATCTAT 58.983 43.478 0.00 0.00 42.66 1.98
4021 5406 4.096532 TGCGATTACGAGGGATCATCTATC 59.903 45.833 0.00 0.00 42.66 2.08
4022 5407 4.336993 GCGATTACGAGGGATCATCTATCT 59.663 45.833 0.00 0.00 42.66 1.98
4023 5408 5.731967 GCGATTACGAGGGATCATCTATCTG 60.732 48.000 0.00 0.00 42.66 2.90
4024 5409 5.587289 GATTACGAGGGATCATCTATCTGC 58.413 45.833 0.00 0.00 34.75 4.26
4025 5410 2.175202 ACGAGGGATCATCTATCTGCC 58.825 52.381 0.00 0.00 34.75 4.85
4026 5411 2.174360 CGAGGGATCATCTATCTGCCA 58.826 52.381 0.00 0.00 34.75 4.92
4027 5412 2.166050 CGAGGGATCATCTATCTGCCAG 59.834 54.545 0.00 0.00 34.75 4.85
4028 5413 3.172339 GAGGGATCATCTATCTGCCAGT 58.828 50.000 0.00 0.00 34.75 4.00
4029 5414 2.905085 AGGGATCATCTATCTGCCAGTG 59.095 50.000 0.00 0.00 34.75 3.66
4030 5415 2.636893 GGGATCATCTATCTGCCAGTGT 59.363 50.000 0.00 0.00 34.75 3.55
4031 5416 3.306641 GGGATCATCTATCTGCCAGTGTC 60.307 52.174 0.00 0.00 34.75 3.67
4032 5417 3.577848 GGATCATCTATCTGCCAGTGTCT 59.422 47.826 0.00 0.00 34.75 3.41
4079 5464 3.692257 GCTGTATGCCTGTATCCATCT 57.308 47.619 0.00 0.00 35.15 2.90
4179 5564 7.389884 GTGCAGTGATTGTATCTGGATGATATT 59.610 37.037 0.00 0.00 39.56 1.28
4204 5589 6.379988 TGATGTACAGTAGTATCATGGTGTGT 59.620 38.462 0.33 0.00 31.84 3.72
4218 5603 7.176589 TCATGGTGTGTCTATGTGTAATGTA 57.823 36.000 0.00 0.00 36.58 2.29
4220 5605 6.599356 TGGTGTGTCTATGTGTAATGTACT 57.401 37.500 0.00 0.00 0.00 2.73
4263 5648 5.248870 CAACTGTACTTGTTGCTTCCTTT 57.751 39.130 15.47 0.00 38.36 3.11
4319 5704 9.886132 TCACTAAGGAATTGGTATCTAAAGTTC 57.114 33.333 0.00 0.00 0.00 3.01
4340 5725 9.793259 AAGTTCCTCACATTAAGAAAGTTCATA 57.207 29.630 0.00 0.00 0.00 2.15
4341 5726 9.965902 AGTTCCTCACATTAAGAAAGTTCATAT 57.034 29.630 0.00 0.00 0.00 1.78
4431 5817 4.929211 TCACGGAGTATGTCACAATTTCTG 59.071 41.667 0.00 0.00 41.61 3.02
4442 5828 6.329496 TGTCACAATTTCTGTTGTTTTCTCC 58.671 36.000 0.00 0.00 40.17 3.71
4451 5837 2.762887 TGTTGTTTTCTCCCACATTGCA 59.237 40.909 0.00 0.00 0.00 4.08
4458 5847 2.596346 TCTCCCACATTGCATTTGTGT 58.404 42.857 21.88 8.56 42.30 3.72
4459 5848 3.760738 TCTCCCACATTGCATTTGTGTA 58.239 40.909 21.88 12.74 42.30 2.90
4495 5884 7.913674 ATTTGCTTGGTTTTAGAACAAAACA 57.086 28.000 12.99 0.00 40.78 2.83
4603 5995 9.871238 AGAGTTGATATATGTACTCGTTGTTTT 57.129 29.630 13.93 0.00 41.38 2.43
4615 6007 9.350357 TGTACTCGTTGTTTTATCTTCTGATAC 57.650 33.333 0.00 0.00 35.14 2.24
4616 6008 7.507672 ACTCGTTGTTTTATCTTCTGATACG 57.492 36.000 0.00 0.00 35.14 3.06
4640 6032 8.024865 ACGGCCAAACTAAATATTACTTGAAAC 58.975 33.333 2.24 0.00 0.00 2.78
4669 6061 5.535030 CAGCCAGTCGCCAGGTATATATATA 59.465 44.000 0.00 0.00 38.78 0.86
4670 6062 6.040504 CAGCCAGTCGCCAGGTATATATATAA 59.959 42.308 3.96 0.00 38.78 0.98
4714 6116 4.470334 AAAATATGGCAAACCGATGCTT 57.530 36.364 0.00 0.00 45.68 3.91
4726 6128 1.527696 CGATGCTTCGTTGAACATGC 58.472 50.000 13.46 0.00 40.53 4.06
4728 6130 2.413239 CGATGCTTCGTTGAACATGCTT 60.413 45.455 13.46 0.00 40.53 3.91
4729 6131 3.568538 GATGCTTCGTTGAACATGCTTT 58.431 40.909 0.00 0.00 0.00 3.51
4751 6153 8.494347 GCTTTTATCATAGAACAGATGCAGTAG 58.506 37.037 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.975660 AACCCTAGCTAGCTCGAGAG 58.024 55.000 23.26 13.04 0.00 3.20
50 51 2.299521 GAAACCCTAGCTAGCTCGAGA 58.700 52.381 23.26 1.96 0.00 4.04
54 55 1.112950 ACCGAAACCCTAGCTAGCTC 58.887 55.000 23.26 3.95 0.00 4.09
55 56 0.824759 CACCGAAACCCTAGCTAGCT 59.175 55.000 23.12 23.12 0.00 3.32
59 60 1.229400 TCCCACCGAAACCCTAGCT 60.229 57.895 0.00 0.00 0.00 3.32
73 74 4.122670 CCCCATCCCCTCCTCCCA 62.123 72.222 0.00 0.00 0.00 4.37
74 75 4.928520 CCCCCATCCCCTCCTCCC 62.929 77.778 0.00 0.00 0.00 4.30
133 140 1.211457 CATCCCCCAAGACCAAGAGAG 59.789 57.143 0.00 0.00 0.00 3.20
134 141 1.289160 CATCCCCCAAGACCAAGAGA 58.711 55.000 0.00 0.00 0.00 3.10
135 142 0.257039 CCATCCCCCAAGACCAAGAG 59.743 60.000 0.00 0.00 0.00 2.85
136 143 0.178846 TCCATCCCCCAAGACCAAGA 60.179 55.000 0.00 0.00 0.00 3.02
137 144 0.929244 ATCCATCCCCCAAGACCAAG 59.071 55.000 0.00 0.00 0.00 3.61
139 146 0.552367 ACATCCATCCCCCAAGACCA 60.552 55.000 0.00 0.00 0.00 4.02
140 147 0.106519 CACATCCATCCCCCAAGACC 60.107 60.000 0.00 0.00 0.00 3.85
141 148 0.625849 ACACATCCATCCCCCAAGAC 59.374 55.000 0.00 0.00 0.00 3.01
144 151 1.221635 CCTACACATCCATCCCCCAA 58.778 55.000 0.00 0.00 0.00 4.12
146 153 1.059913 CTCCTACACATCCATCCCCC 58.940 60.000 0.00 0.00 0.00 5.40
147 154 1.807814 ACTCCTACACATCCATCCCC 58.192 55.000 0.00 0.00 0.00 4.81
148 155 3.845860 TCTACTCCTACACATCCATCCC 58.154 50.000 0.00 0.00 0.00 3.85
150 157 6.547880 TCTTCTTCTACTCCTACACATCCATC 59.452 42.308 0.00 0.00 0.00 3.51
151 158 6.322712 GTCTTCTTCTACTCCTACACATCCAT 59.677 42.308 0.00 0.00 0.00 3.41
152 159 5.652891 GTCTTCTTCTACTCCTACACATCCA 59.347 44.000 0.00 0.00 0.00 3.41
155 162 4.641094 CGGTCTTCTTCTACTCCTACACAT 59.359 45.833 0.00 0.00 0.00 3.21
156 163 4.008330 CGGTCTTCTTCTACTCCTACACA 58.992 47.826 0.00 0.00 0.00 3.72
158 165 4.564782 TCGGTCTTCTTCTACTCCTACA 57.435 45.455 0.00 0.00 0.00 2.74
159 166 4.943093 AGTTCGGTCTTCTTCTACTCCTAC 59.057 45.833 0.00 0.00 0.00 3.18
160 167 4.942483 CAGTTCGGTCTTCTTCTACTCCTA 59.058 45.833 0.00 0.00 0.00 2.94
161 168 3.759618 CAGTTCGGTCTTCTTCTACTCCT 59.240 47.826 0.00 0.00 0.00 3.69
199 206 4.966787 GGCCAAGGCACGAACCCA 62.967 66.667 13.87 0.00 44.11 4.51
635 701 1.953686 CTCCTTCCGATCAGAGAGGAC 59.046 57.143 6.02 0.00 33.23 3.85
636 702 1.847088 TCTCCTTCCGATCAGAGAGGA 59.153 52.381 8.61 8.61 35.36 3.71
637 703 2.229792 CTCTCCTTCCGATCAGAGAGG 58.770 57.143 7.80 7.77 45.61 3.69
640 706 2.356665 TCCTCTCCTTCCGATCAGAG 57.643 55.000 0.00 0.00 33.44 3.35
641 707 4.455070 TTATCCTCTCCTTCCGATCAGA 57.545 45.455 0.00 0.00 0.00 3.27
642 708 4.159506 GGATTATCCTCTCCTTCCGATCAG 59.840 50.000 3.59 0.00 32.53 2.90
643 709 4.090090 GGATTATCCTCTCCTTCCGATCA 58.910 47.826 3.59 0.00 32.53 2.92
644 710 3.449377 GGGATTATCCTCTCCTTCCGATC 59.551 52.174 11.40 0.00 36.57 3.69
645 711 3.445987 GGGATTATCCTCTCCTTCCGAT 58.554 50.000 11.40 0.00 36.57 4.18
646 712 2.492940 GGGGATTATCCTCTCCTTCCGA 60.493 54.545 11.40 0.00 33.02 4.55
647 713 1.903183 GGGGATTATCCTCTCCTTCCG 59.097 57.143 11.40 0.00 33.02 4.30
648 714 1.903183 CGGGGATTATCCTCTCCTTCC 59.097 57.143 9.70 0.20 33.85 3.46
649 715 1.276705 GCGGGGATTATCCTCTCCTTC 59.723 57.143 9.70 0.00 33.85 3.46
650 716 1.353091 GCGGGGATTATCCTCTCCTT 58.647 55.000 9.70 0.00 33.85 3.36
651 717 0.900647 CGCGGGGATTATCCTCTCCT 60.901 60.000 9.70 0.00 33.85 3.69
687 758 2.125106 GCGGATATGCGATCCCCC 60.125 66.667 21.62 0.00 34.76 5.40
688 759 1.741770 GTGCGGATATGCGATCCCC 60.742 63.158 21.62 2.42 37.81 4.81
689 760 2.094659 CGTGCGGATATGCGATCCC 61.095 63.158 21.62 2.82 37.81 3.85
690 761 2.730672 GCGTGCGGATATGCGATCC 61.731 63.158 21.62 3.20 37.81 3.36
691 762 2.772189 GCGTGCGGATATGCGATC 59.228 61.111 21.62 10.67 37.81 3.69
765 1368 2.058595 CAGGTAGGTGACGGGGGAG 61.059 68.421 0.00 0.00 0.00 4.30
766 1369 2.038329 CAGGTAGGTGACGGGGGA 59.962 66.667 0.00 0.00 0.00 4.81
767 1370 3.782443 GCAGGTAGGTGACGGGGG 61.782 72.222 0.00 0.00 0.00 5.40
773 1386 1.612442 GAGGGTGGCAGGTAGGTGA 60.612 63.158 0.00 0.00 0.00 4.02
787 1400 2.851102 AGGATGGGGATGCGAGGG 60.851 66.667 0.00 0.00 0.00 4.30
788 1401 2.746359 GAGGATGGGGATGCGAGG 59.254 66.667 0.00 0.00 0.00 4.63
791 1404 2.851102 AGGGAGGATGGGGATGCG 60.851 66.667 0.00 0.00 0.00 4.73
792 1405 2.533463 GGAGGGAGGATGGGGATGC 61.533 68.421 0.00 0.00 0.00 3.91
795 1408 2.372688 GTGGAGGGAGGATGGGGA 59.627 66.667 0.00 0.00 0.00 4.81
798 1411 1.476007 GGATCGTGGAGGGAGGATGG 61.476 65.000 0.00 0.00 0.00 3.51
800 1413 1.531840 CGGATCGTGGAGGGAGGAT 60.532 63.158 0.00 0.00 0.00 3.24
801 1414 2.008006 ATCGGATCGTGGAGGGAGGA 62.008 60.000 0.00 0.00 0.00 3.71
802 1415 1.528292 GATCGGATCGTGGAGGGAGG 61.528 65.000 1.62 0.00 0.00 4.30
804 1454 1.530891 GGATCGGATCGTGGAGGGA 60.531 63.158 11.62 0.00 0.00 4.20
810 1460 1.069204 AGTTGATGGGATCGGATCGTG 59.931 52.381 11.62 0.00 0.00 4.35
811 1461 1.341531 GAGTTGATGGGATCGGATCGT 59.658 52.381 11.62 0.87 0.00 3.73
814 1464 2.774234 AGTTGAGTTGATGGGATCGGAT 59.226 45.455 0.00 0.00 0.00 4.18
817 1467 2.283298 CCAGTTGAGTTGATGGGATCG 58.717 52.381 0.00 0.00 0.00 3.69
821 1471 1.538047 CCACCAGTTGAGTTGATGGG 58.462 55.000 0.00 0.00 37.13 4.00
824 1474 1.237285 GCGCCACCAGTTGAGTTGAT 61.237 55.000 0.00 0.00 0.00 2.57
827 1477 2.972505 CGCGCCACCAGTTGAGTT 60.973 61.111 0.00 0.00 0.00 3.01
841 1491 3.554692 GATCACCGTGAAGGCGCG 61.555 66.667 5.07 0.00 46.52 6.86
842 1492 2.434185 TGATCACCGTGAAGGCGC 60.434 61.111 5.07 0.00 46.52 6.53
844 1494 2.740714 GCGTGATCACCGTGAAGGC 61.741 63.158 20.03 11.60 46.52 4.35
846 1496 2.100631 GGGCGTGATCACCGTGAAG 61.101 63.158 20.03 6.06 0.00 3.02
847 1497 2.047655 GGGCGTGATCACCGTGAA 60.048 61.111 20.03 0.00 0.00 3.18
907 1642 2.851263 ATACAAGTGACAAAGGCGGA 57.149 45.000 0.00 0.00 0.00 5.54
913 1648 5.712917 GGGGGATGTAAATACAAGTGACAAA 59.287 40.000 0.00 0.00 39.99 2.83
916 1651 5.112129 AGGGGGATGTAAATACAAGTGAC 57.888 43.478 0.00 0.00 39.99 3.67
918 1653 7.016661 AGAGATAGGGGGATGTAAATACAAGTG 59.983 40.741 0.00 0.00 39.99 3.16
919 1654 7.082972 AGAGATAGGGGGATGTAAATACAAGT 58.917 38.462 0.00 0.00 39.99 3.16
921 1656 6.210784 CGAGAGATAGGGGGATGTAAATACAA 59.789 42.308 0.00 0.00 39.99 2.41
922 1657 5.715279 CGAGAGATAGGGGGATGTAAATACA 59.285 44.000 0.00 0.00 40.98 2.29
924 1659 5.715279 CACGAGAGATAGGGGGATGTAAATA 59.285 44.000 0.00 0.00 0.00 1.40
925 1660 4.528596 CACGAGAGATAGGGGGATGTAAAT 59.471 45.833 0.00 0.00 0.00 1.40
926 1661 3.895656 CACGAGAGATAGGGGGATGTAAA 59.104 47.826 0.00 0.00 0.00 2.01
927 1662 3.497332 CACGAGAGATAGGGGGATGTAA 58.503 50.000 0.00 0.00 0.00 2.41
928 1663 2.818216 GCACGAGAGATAGGGGGATGTA 60.818 54.545 0.00 0.00 0.00 2.29
929 1664 2.002505 CACGAGAGATAGGGGGATGT 57.997 55.000 0.00 0.00 0.00 3.06
931 1666 0.543174 GGCACGAGAGATAGGGGGAT 60.543 60.000 0.00 0.00 0.00 3.85
932 1667 1.152525 GGCACGAGAGATAGGGGGA 60.153 63.158 0.00 0.00 0.00 4.81
933 1668 1.152440 AGGCACGAGAGATAGGGGG 60.152 63.158 0.00 0.00 0.00 5.40
934 1669 1.182385 GGAGGCACGAGAGATAGGGG 61.182 65.000 0.00 0.00 0.00 4.79
938 1673 1.109920 GCAGGGAGGCACGAGAGATA 61.110 60.000 0.00 0.00 0.00 1.98
939 1674 2.430610 GCAGGGAGGCACGAGAGAT 61.431 63.158 0.00 0.00 0.00 2.75
941 1676 4.154347 GGCAGGGAGGCACGAGAG 62.154 72.222 0.00 0.00 43.51 3.20
957 1692 3.372554 GAGAACCCCCTCGCTTCGG 62.373 68.421 0.00 0.00 0.00 4.30
958 1693 2.184579 GAGAACCCCCTCGCTTCG 59.815 66.667 0.00 0.00 0.00 3.79
960 1695 2.352032 CGAGAGAACCCCCTCGCTT 61.352 63.158 0.00 0.00 44.35 4.68
961 1696 2.756283 CGAGAGAACCCCCTCGCT 60.756 66.667 0.00 0.00 44.35 4.93
964 1699 2.364448 AGCCGAGAGAACCCCCTC 60.364 66.667 0.00 0.00 0.00 4.30
968 1755 2.125350 CAGCAGCCGAGAGAACCC 60.125 66.667 0.00 0.00 0.00 4.11
988 1775 0.107703 TTCATCATCCGGTGGCTCAC 60.108 55.000 0.00 0.00 0.00 3.51
1242 2045 3.812053 AGAAGTTGCTGTGCTTGAAGTAG 59.188 43.478 0.00 0.00 0.00 2.57
1309 2117 1.606531 CAGCAAGGAGAAGGGGGAG 59.393 63.158 0.00 0.00 0.00 4.30
1310 2118 2.606587 GCAGCAAGGAGAAGGGGGA 61.607 63.158 0.00 0.00 0.00 4.81
1311 2119 2.044551 GCAGCAAGGAGAAGGGGG 60.045 66.667 0.00 0.00 0.00 5.40
1312 2120 0.251519 AAAGCAGCAAGGAGAAGGGG 60.252 55.000 0.00 0.00 0.00 4.79
1313 2121 0.886563 CAAAGCAGCAAGGAGAAGGG 59.113 55.000 0.00 0.00 0.00 3.95
1314 2122 0.243095 GCAAAGCAGCAAGGAGAAGG 59.757 55.000 0.00 0.00 0.00 3.46
1315 2123 1.245732 AGCAAAGCAGCAAGGAGAAG 58.754 50.000 0.00 0.00 36.85 2.85
1316 2124 1.696063 AAGCAAAGCAGCAAGGAGAA 58.304 45.000 0.00 0.00 36.85 2.87
1317 2125 1.338973 CAAAGCAAAGCAGCAAGGAGA 59.661 47.619 0.00 0.00 36.85 3.71
1407 2215 5.501156 ACTTTTAGTAATCCCAAGCTCCAG 58.499 41.667 0.00 0.00 0.00 3.86
1425 2236 5.337652 GGTGAGCAGATACTCCAGTACTTTT 60.338 44.000 0.00 0.00 35.72 2.27
1451 2266 8.360390 GGATACATCAAAATTTCAGTAATCCCC 58.640 37.037 0.00 0.00 0.00 4.81
1472 2288 2.423577 ACACGAGGCAAAGTTGGATAC 58.576 47.619 0.00 0.00 0.00 2.24
1480 2296 1.261619 GACTGTGAACACGAGGCAAAG 59.738 52.381 0.00 0.00 0.00 2.77
1503 2319 1.344763 ACTTTGTGAACTAGAGCCGCT 59.655 47.619 0.00 0.00 0.00 5.52
1521 2361 2.107204 GTCAATGATCCCCTGCCATACT 59.893 50.000 0.00 0.00 0.00 2.12
1524 2364 0.928505 TGTCAATGATCCCCTGCCAT 59.071 50.000 0.00 0.00 0.00 4.40
1554 2394 7.378966 TGTCAATCACTCTCTAACTAACTTGG 58.621 38.462 0.00 0.00 0.00 3.61
1580 2420 1.061546 GACCCCCAAACCACTAGTGA 58.938 55.000 24.68 0.00 0.00 3.41
1598 2443 0.890542 GCCACAATGCCACTGTGAGA 60.891 55.000 8.03 0.00 45.80 3.27
1599 2444 0.892358 AGCCACAATGCCACTGTGAG 60.892 55.000 8.03 0.00 45.80 3.51
1614 2459 2.550277 TCCTCATAGTCCTCAAGCCA 57.450 50.000 0.00 0.00 0.00 4.75
1619 2464 4.871822 TGTCTTCATCCTCATAGTCCTCA 58.128 43.478 0.00 0.00 0.00 3.86
1621 2466 4.653341 CCTTGTCTTCATCCTCATAGTCCT 59.347 45.833 0.00 0.00 0.00 3.85
1627 2473 3.184628 TGGACCTTGTCTTCATCCTCAT 58.815 45.455 0.00 0.00 32.47 2.90
1630 2481 2.625639 ACTGGACCTTGTCTTCATCCT 58.374 47.619 0.00 0.00 32.47 3.24
1633 2484 2.887152 GCAAACTGGACCTTGTCTTCAT 59.113 45.455 0.00 0.00 32.47 2.57
1638 2489 1.604278 GACTGCAAACTGGACCTTGTC 59.396 52.381 0.00 0.00 0.00 3.18
1641 2492 3.857157 TTAGACTGCAAACTGGACCTT 57.143 42.857 0.00 0.00 0.00 3.50
1690 2541 4.834406 AGATGGAGGTATGTAGGGAGAA 57.166 45.455 0.00 0.00 0.00 2.87
1691 2542 4.834406 AAGATGGAGGTATGTAGGGAGA 57.166 45.455 0.00 0.00 0.00 3.71
1752 2639 7.097192 ACCTAGGCGAACATGTACATAATATG 58.903 38.462 9.30 0.00 0.00 1.78
1757 2644 4.279169 GGTACCTAGGCGAACATGTACATA 59.721 45.833 9.30 0.00 32.30 2.29
1759 2646 2.428171 GGTACCTAGGCGAACATGTACA 59.572 50.000 9.30 0.00 32.30 2.90
1760 2647 2.692041 AGGTACCTAGGCGAACATGTAC 59.308 50.000 14.41 0.83 0.00 2.90
1824 2711 4.673311 GCATAAAACGAAAACATGACACGT 59.327 37.500 0.00 2.94 38.81 4.49
1864 2752 4.223556 ACTGACTCTGTAGATTCCGAGA 57.776 45.455 0.00 0.00 0.00 4.04
1871 2759 6.596309 TTGATGTCAACTGACTCTGTAGAT 57.404 37.500 10.99 0.00 44.99 1.98
1889 2824 5.156355 GTGCTTGTACATTCCAAGTTGATG 58.844 41.667 3.87 3.71 41.08 3.07
1912 2847 3.063997 CAGCTGGCTTTAAGGTTATCGTG 59.936 47.826 5.57 0.00 0.00 4.35
1914 2849 2.032178 GCAGCTGGCTTTAAGGTTATCG 59.968 50.000 17.12 0.00 40.25 2.92
1957 2892 9.673454 GATTTTTACGAACCAGTGTCTAAAAAT 57.327 29.630 14.72 14.72 34.78 1.82
1965 2900 5.127491 TCAAGGATTTTTACGAACCAGTGT 58.873 37.500 0.00 0.00 0.00 3.55
1968 2903 9.124807 GTTAATTCAAGGATTTTTACGAACCAG 57.875 33.333 0.00 0.00 0.00 4.00
2008 2944 7.016153 TGTAGGTTATGGATTTGACTCAAGT 57.984 36.000 0.00 0.00 0.00 3.16
2023 2959 6.156256 TGCACTCAGGTAATTCTGTAGGTTAT 59.844 38.462 0.00 0.00 36.25 1.89
2024 2960 5.482526 TGCACTCAGGTAATTCTGTAGGTTA 59.517 40.000 0.00 0.00 36.25 2.85
2039 2975 5.389859 TGTAATTCCAAATTGCACTCAGG 57.610 39.130 0.00 0.00 0.00 3.86
2040 2976 5.346822 GCTTGTAATTCCAAATTGCACTCAG 59.653 40.000 3.18 1.16 0.00 3.35
2148 3087 4.703575 TCTGATCAGATCTTTTGGCCAAAG 59.296 41.667 28.79 22.08 36.88 2.77
2182 3205 6.372659 CAGACAGTAGCATAACAAACATCCTT 59.627 38.462 0.00 0.00 0.00 3.36
2187 3210 5.364778 ACACAGACAGTAGCATAACAAACA 58.635 37.500 0.00 0.00 0.00 2.83
2197 3220 1.151668 CAGGCAACACAGACAGTAGC 58.848 55.000 0.00 0.00 41.41 3.58
2221 3253 9.571816 TCTTTTGGCCAAAATATCAATTTTTCT 57.428 25.926 37.05 0.00 41.50 2.52
2224 3256 9.517868 TGATCTTTTGGCCAAAATATCAATTTT 57.482 25.926 41.38 23.82 44.01 1.82
2225 3257 9.169592 CTGATCTTTTGGCCAAAATATCAATTT 57.830 29.630 41.43 24.97 45.09 1.82
2226 3258 8.542080 TCTGATCTTTTGGCCAAAATATCAATT 58.458 29.630 41.43 25.49 45.09 2.32
2227 3259 8.081517 TCTGATCTTTTGGCCAAAATATCAAT 57.918 30.769 41.43 29.87 45.09 2.57
2228 3260 7.479352 TCTGATCTTTTGGCCAAAATATCAA 57.521 32.000 41.43 34.03 45.09 2.57
2229 3261 7.479352 TTCTGATCTTTTGGCCAAAATATCA 57.521 32.000 40.74 40.74 44.38 2.15
2230 3262 8.253113 TCTTTCTGATCTTTTGGCCAAAATATC 58.747 33.333 37.97 37.97 40.90 1.63
2231 3263 8.137745 TCTTTCTGATCTTTTGGCCAAAATAT 57.862 30.769 37.05 33.89 39.29 1.28
2232 3264 7.233348 ACTCTTTCTGATCTTTTGGCCAAAATA 59.767 33.333 37.05 31.29 39.29 1.40
2233 3265 6.042437 ACTCTTTCTGATCTTTTGGCCAAAAT 59.958 34.615 37.05 26.53 39.29 1.82
2234 3266 5.363580 ACTCTTTCTGATCTTTTGGCCAAAA 59.636 36.000 35.22 35.22 37.90 2.44
2235 3267 4.895297 ACTCTTTCTGATCTTTTGGCCAAA 59.105 37.500 27.13 27.13 0.00 3.28
2236 3268 4.473444 ACTCTTTCTGATCTTTTGGCCAA 58.527 39.130 16.05 16.05 0.00 4.52
2237 3269 4.104383 ACTCTTTCTGATCTTTTGGCCA 57.896 40.909 0.00 0.00 0.00 5.36
2238 3270 5.940470 TCTTACTCTTTCTGATCTTTTGGCC 59.060 40.000 0.00 0.00 0.00 5.36
2239 3271 6.876257 TCTCTTACTCTTTCTGATCTTTTGGC 59.124 38.462 0.00 0.00 0.00 4.52
2240 3272 7.548780 CCTCTCTTACTCTTTCTGATCTTTTGG 59.451 40.741 0.00 0.00 0.00 3.28
2241 3273 8.310382 TCCTCTCTTACTCTTTCTGATCTTTTG 58.690 37.037 0.00 0.00 0.00 2.44
2242 3274 8.429237 TCCTCTCTTACTCTTTCTGATCTTTT 57.571 34.615 0.00 0.00 0.00 2.27
2243 3275 8.429237 TTCCTCTCTTACTCTTTCTGATCTTT 57.571 34.615 0.00 0.00 0.00 2.52
2244 3276 7.673926 ACTTCCTCTCTTACTCTTTCTGATCTT 59.326 37.037 0.00 0.00 0.00 2.40
2245 3277 7.182060 ACTTCCTCTCTTACTCTTTCTGATCT 58.818 38.462 0.00 0.00 0.00 2.75
2246 3278 7.404671 ACTTCCTCTCTTACTCTTTCTGATC 57.595 40.000 0.00 0.00 0.00 2.92
2247 3279 8.912988 CATACTTCCTCTCTTACTCTTTCTGAT 58.087 37.037 0.00 0.00 0.00 2.90
2248 3280 7.340743 CCATACTTCCTCTCTTACTCTTTCTGA 59.659 40.741 0.00 0.00 0.00 3.27
2249 3281 7.123547 ACCATACTTCCTCTCTTACTCTTTCTG 59.876 40.741 0.00 0.00 0.00 3.02
2250 3282 7.186268 ACCATACTTCCTCTCTTACTCTTTCT 58.814 38.462 0.00 0.00 0.00 2.52
2251 3283 7.412853 ACCATACTTCCTCTCTTACTCTTTC 57.587 40.000 0.00 0.00 0.00 2.62
2252 3284 8.919145 CATACCATACTTCCTCTCTTACTCTTT 58.081 37.037 0.00 0.00 0.00 2.52
2253 3285 8.062536 ACATACCATACTTCCTCTCTTACTCTT 58.937 37.037 0.00 0.00 0.00 2.85
2254 3286 7.588169 ACATACCATACTTCCTCTCTTACTCT 58.412 38.462 0.00 0.00 0.00 3.24
2255 3287 7.826918 ACATACCATACTTCCTCTCTTACTC 57.173 40.000 0.00 0.00 0.00 2.59
2256 3288 9.357161 CTAACATACCATACTTCCTCTCTTACT 57.643 37.037 0.00 0.00 0.00 2.24
2257 3289 9.134055 ACTAACATACCATACTTCCTCTCTTAC 57.866 37.037 0.00 0.00 0.00 2.34
2258 3290 9.132923 CACTAACATACCATACTTCCTCTCTTA 57.867 37.037 0.00 0.00 0.00 2.10
2259 3291 7.620094 ACACTAACATACCATACTTCCTCTCTT 59.380 37.037 0.00 0.00 0.00 2.85
2260 3292 7.126733 ACACTAACATACCATACTTCCTCTCT 58.873 38.462 0.00 0.00 0.00 3.10
2261 3293 7.285858 AGACACTAACATACCATACTTCCTCTC 59.714 40.741 0.00 0.00 0.00 3.20
2262 3294 7.126733 AGACACTAACATACCATACTTCCTCT 58.873 38.462 0.00 0.00 0.00 3.69
2263 3295 7.349412 AGACACTAACATACCATACTTCCTC 57.651 40.000 0.00 0.00 0.00 3.71
2264 3296 8.861086 CATAGACACTAACATACCATACTTCCT 58.139 37.037 0.00 0.00 0.00 3.36
2265 3297 8.639761 ACATAGACACTAACATACCATACTTCC 58.360 37.037 0.00 0.00 0.00 3.46
2269 3301 9.257651 GGAAACATAGACACTAACATACCATAC 57.742 37.037 0.00 0.00 0.00 2.39
2270 3302 9.209048 AGGAAACATAGACACTAACATACCATA 57.791 33.333 0.00 0.00 0.00 2.74
2271 3303 8.090788 AGGAAACATAGACACTAACATACCAT 57.909 34.615 0.00 0.00 0.00 3.55
2272 3304 7.399191 AGAGGAAACATAGACACTAACATACCA 59.601 37.037 0.00 0.00 0.00 3.25
2273 3305 7.783042 AGAGGAAACATAGACACTAACATACC 58.217 38.462 0.00 0.00 0.00 2.73
2274 3306 9.953697 CTAGAGGAAACATAGACACTAACATAC 57.046 37.037 0.00 0.00 0.00 2.39
2275 3307 9.696572 ACTAGAGGAAACATAGACACTAACATA 57.303 33.333 0.00 0.00 0.00 2.29
2276 3308 8.596781 ACTAGAGGAAACATAGACACTAACAT 57.403 34.615 0.00 0.00 0.00 2.71
2277 3309 9.175312 CTACTAGAGGAAACATAGACACTAACA 57.825 37.037 0.00 0.00 0.00 2.41
2278 3310 8.130469 GCTACTAGAGGAAACATAGACACTAAC 58.870 40.741 0.00 0.00 0.00 2.34
2279 3311 7.832685 TGCTACTAGAGGAAACATAGACACTAA 59.167 37.037 0.00 0.00 0.00 2.24
2280 3312 7.344134 TGCTACTAGAGGAAACATAGACACTA 58.656 38.462 0.00 0.00 0.00 2.74
2281 3313 6.188407 TGCTACTAGAGGAAACATAGACACT 58.812 40.000 0.00 0.00 0.00 3.55
2282 3314 6.452494 TGCTACTAGAGGAAACATAGACAC 57.548 41.667 0.00 0.00 0.00 3.67
2283 3315 7.492524 CAATGCTACTAGAGGAAACATAGACA 58.507 38.462 0.00 0.00 0.00 3.41
2284 3316 6.422400 GCAATGCTACTAGAGGAAACATAGAC 59.578 42.308 0.00 0.00 0.00 2.59
2285 3317 6.463049 GGCAATGCTACTAGAGGAAACATAGA 60.463 42.308 4.82 0.00 0.00 1.98
2286 3318 5.698545 GGCAATGCTACTAGAGGAAACATAG 59.301 44.000 4.82 0.00 0.00 2.23
2287 3319 5.611374 GGCAATGCTACTAGAGGAAACATA 58.389 41.667 4.82 0.00 0.00 2.29
2288 3320 4.455606 GGCAATGCTACTAGAGGAAACAT 58.544 43.478 4.82 0.00 0.00 2.71
2289 3321 3.678806 CGGCAATGCTACTAGAGGAAACA 60.679 47.826 4.82 0.00 0.00 2.83
2290 3322 2.866762 CGGCAATGCTACTAGAGGAAAC 59.133 50.000 4.82 0.00 0.00 2.78
2291 3323 2.764010 TCGGCAATGCTACTAGAGGAAA 59.236 45.455 4.82 0.00 0.00 3.13
2292 3324 2.384828 TCGGCAATGCTACTAGAGGAA 58.615 47.619 4.82 0.00 0.00 3.36
2293 3325 2.067365 TCGGCAATGCTACTAGAGGA 57.933 50.000 4.82 0.00 0.00 3.71
2294 3326 4.521130 TTATCGGCAATGCTACTAGAGG 57.479 45.455 4.82 0.00 0.00 3.69
2295 3327 5.347093 CACATTATCGGCAATGCTACTAGAG 59.653 44.000 4.82 0.00 39.13 2.43
2296 3328 5.230182 CACATTATCGGCAATGCTACTAGA 58.770 41.667 4.82 0.00 39.13 2.43
2297 3329 4.389992 CCACATTATCGGCAATGCTACTAG 59.610 45.833 4.82 0.00 39.13 2.57
2298 3330 4.314961 CCACATTATCGGCAATGCTACTA 58.685 43.478 4.82 0.00 39.13 1.82
2299 3331 3.141398 CCACATTATCGGCAATGCTACT 58.859 45.455 4.82 0.00 39.13 2.57
2338 3370 8.559536 CACACGCAACTTTTTAGGATATATCAT 58.440 33.333 14.60 10.02 0.00 2.45
2340 3372 7.916552 ACACACGCAACTTTTTAGGATATATC 58.083 34.615 3.96 3.96 0.00 1.63
2341 3373 7.859325 ACACACGCAACTTTTTAGGATATAT 57.141 32.000 0.00 0.00 0.00 0.86
2342 3374 7.361371 CCAACACACGCAACTTTTTAGGATATA 60.361 37.037 0.00 0.00 0.00 0.86
2351 3392 2.490115 TCTTCCAACACACGCAACTTTT 59.510 40.909 0.00 0.00 0.00 2.27
2355 3396 1.131504 TGTTCTTCCAACACACGCAAC 59.868 47.619 0.00 0.00 0.00 4.17
2361 3402 6.405286 CCTGTAACATTTGTTCTTCCAACACA 60.405 38.462 0.00 0.00 39.31 3.72
2373 3414 6.158598 GCAACAATCATCCTGTAACATTTGT 58.841 36.000 0.00 0.00 0.00 2.83
2376 3417 5.981088 TGCAACAATCATCCTGTAACATT 57.019 34.783 0.00 0.00 0.00 2.71
2379 3420 7.656707 AAAAATGCAACAATCATCCTGTAAC 57.343 32.000 0.00 0.00 0.00 2.50
2423 3474 2.355209 GCACAAACCTCCCCAAAACAAA 60.355 45.455 0.00 0.00 0.00 2.83
2424 3475 1.208293 GCACAAACCTCCCCAAAACAA 59.792 47.619 0.00 0.00 0.00 2.83
2425 3476 0.827368 GCACAAACCTCCCCAAAACA 59.173 50.000 0.00 0.00 0.00 2.83
2426 3477 0.249280 CGCACAAACCTCCCCAAAAC 60.249 55.000 0.00 0.00 0.00 2.43
2427 3478 0.684805 ACGCACAAACCTCCCCAAAA 60.685 50.000 0.00 0.00 0.00 2.44
2428 3479 0.684805 AACGCACAAACCTCCCCAAA 60.685 50.000 0.00 0.00 0.00 3.28
2429 3480 1.076632 AACGCACAAACCTCCCCAA 60.077 52.632 0.00 0.00 0.00 4.12
2430 3481 1.826054 CAACGCACAAACCTCCCCA 60.826 57.895 0.00 0.00 0.00 4.96
2431 3482 1.515521 CTCAACGCACAAACCTCCCC 61.516 60.000 0.00 0.00 0.00 4.81
2432 3483 0.818040 ACTCAACGCACAAACCTCCC 60.818 55.000 0.00 0.00 0.00 4.30
2433 3484 1.021968 AACTCAACGCACAAACCTCC 58.978 50.000 0.00 0.00 0.00 4.30
2437 3488 4.670621 CACAGATTAACTCAACGCACAAAC 59.329 41.667 0.00 0.00 0.00 2.93
2442 3493 2.224426 ACCCACAGATTAACTCAACGCA 60.224 45.455 0.00 0.00 0.00 5.24
2445 3496 7.506328 AAAACTACCCACAGATTAACTCAAC 57.494 36.000 0.00 0.00 0.00 3.18
2446 3497 9.802039 AATAAAACTACCCACAGATTAACTCAA 57.198 29.630 0.00 0.00 0.00 3.02
2507 3561 3.708403 TCATGAGAGCATTGAGTTGGT 57.292 42.857 0.00 0.00 30.68 3.67
2514 3568 5.470437 AGCTAACATCATCATGAGAGCATTG 59.530 40.000 13.31 0.00 40.67 2.82
2521 3575 4.236147 CTCGGAGCTAACATCATCATGAG 58.764 47.826 0.09 0.00 33.72 2.90
2545 3602 6.717289 AGCCTAACTATAATGTGTGAAACCA 58.283 36.000 0.00 0.00 34.36 3.67
2549 3606 8.148351 GGTGATAGCCTAACTATAATGTGTGAA 58.852 37.037 0.00 0.00 41.87 3.18
2559 3616 7.863901 AAAGATCAGGTGATAGCCTAACTAT 57.136 36.000 0.00 0.00 44.62 2.12
2585 3642 9.436957 TGAAGTATCAACTGGAAGATTTTACTC 57.563 33.333 0.00 0.00 35.62 2.59
2677 3817 7.568349 ACTCAAGGCAAGATGAAGTATCAATA 58.432 34.615 0.00 0.00 39.49 1.90
2691 3831 2.746362 CTGGAAGCTTACTCAAGGCAAG 59.254 50.000 10.74 0.00 31.96 4.01
2776 4008 7.092079 TCATGATACATTTTTCAGTTTGCTGG 58.908 34.615 0.00 0.00 42.78 4.85
2857 4228 4.096681 AGAGAGAGAGAGAGAGAGTGTGA 58.903 47.826 0.00 0.00 0.00 3.58
2886 4269 5.695851 ATTTAGAGAAACAACAGTGGCAG 57.304 39.130 0.00 0.00 0.00 4.85
2926 4309 5.703876 CAGAAAGAAGGTTTATCCAACAGC 58.296 41.667 0.00 0.00 37.07 4.40
2947 4330 9.831737 CAGAAATCGGATAATTAAATAAGGCAG 57.168 33.333 0.00 0.00 0.00 4.85
3103 4486 2.158986 AGATTGCTGATTCTGAGACCCG 60.159 50.000 0.00 0.00 0.00 5.28
3148 4531 2.878406 CTCCACGTCATGTCCAAAGTTT 59.122 45.455 0.00 0.00 0.00 2.66
3252 4635 1.888512 TCTTTTCCATGGCTTGCAGAC 59.111 47.619 6.96 0.00 0.00 3.51
3313 4696 1.421485 CATGACTCGCGCCAAGAAC 59.579 57.895 11.12 5.71 0.00 3.01
3341 4724 2.939103 AGATCAGCTGGCGTATGAAAAC 59.061 45.455 15.13 0.00 0.00 2.43
3343 4726 2.483714 GGAGATCAGCTGGCGTATGAAA 60.484 50.000 15.13 0.00 0.00 2.69
3442 4825 1.068083 AGTGCCCATGCTATCGACG 59.932 57.895 0.00 0.00 38.71 5.12
3487 4870 3.076621 CTCCTGCTGCTCAAACATTACA 58.923 45.455 0.00 0.00 0.00 2.41
3517 4900 2.226602 TGACACCGTTCACGAATGAA 57.773 45.000 0.00 0.00 42.73 2.57
3520 4903 3.454375 GGATATGACACCGTTCACGAAT 58.546 45.455 0.00 0.00 43.02 3.34
3521 4904 2.732912 CGGATATGACACCGTTCACGAA 60.733 50.000 0.00 0.00 43.53 3.85
3755 5138 4.770531 TCTGGAATTCCTGTTCTTCGAGTA 59.229 41.667 24.73 2.39 36.48 2.59
3768 5151 5.335191 GCGATGGATTATTGTCTGGAATTCC 60.335 44.000 18.17 18.17 0.00 3.01
3776 5159 6.533012 CGATAGAATGCGATGGATTATTGTCT 59.467 38.462 0.00 0.00 39.76 3.41
3800 5183 3.939837 TTCTCAAGGCTGCTCGGCG 62.940 63.158 0.00 0.00 44.22 6.46
3812 5195 4.228210 AGGCATTCTGGTAAGGATTCTCAA 59.772 41.667 0.00 0.00 0.00 3.02
3884 5269 1.196766 AGGCAGCAGTGATCCACTCA 61.197 55.000 0.00 0.00 43.43 3.41
3889 5274 0.610232 ACCAAAGGCAGCAGTGATCC 60.610 55.000 0.00 0.00 0.00 3.36
3933 5318 4.565229 CATTGACGAAAATAAGACCGACG 58.435 43.478 0.00 0.00 0.00 5.12
3958 5343 3.891366 CTCCCAGAAGTTGAACCAAACAT 59.109 43.478 0.00 0.00 32.21 2.71
3964 5349 3.009584 AGAATCCTCCCAGAAGTTGAACC 59.990 47.826 0.00 0.00 0.00 3.62
3990 5375 0.373716 CTCGTAATCGCAAGCAACCC 59.626 55.000 0.00 0.00 36.96 4.11
3993 5378 0.248012 TCCCTCGTAATCGCAAGCAA 59.752 50.000 0.00 0.00 36.96 3.91
3995 5380 1.140816 GATCCCTCGTAATCGCAAGC 58.859 55.000 0.00 0.00 36.96 4.01
3996 5381 2.509052 TGATCCCTCGTAATCGCAAG 57.491 50.000 0.00 0.00 36.96 4.01
3997 5382 2.628178 AGATGATCCCTCGTAATCGCAA 59.372 45.455 0.00 0.00 36.96 4.85
3999 5384 4.336993 AGATAGATGATCCCTCGTAATCGC 59.663 45.833 0.00 0.00 34.80 4.58
4000 5385 5.731967 GCAGATAGATGATCCCTCGTAATCG 60.732 48.000 0.00 0.00 34.80 3.34
4001 5386 5.451242 GGCAGATAGATGATCCCTCGTAATC 60.451 48.000 0.00 0.00 34.80 1.75
4002 5387 4.404073 GGCAGATAGATGATCCCTCGTAAT 59.596 45.833 0.00 0.00 34.80 1.89
4003 5388 3.764434 GGCAGATAGATGATCCCTCGTAA 59.236 47.826 0.00 0.00 34.80 3.18
4004 5389 3.245264 TGGCAGATAGATGATCCCTCGTA 60.245 47.826 0.00 0.00 34.80 3.43
4005 5390 2.175202 GGCAGATAGATGATCCCTCGT 58.825 52.381 0.00 0.00 34.80 4.18
4006 5391 2.166050 CTGGCAGATAGATGATCCCTCG 59.834 54.545 9.42 0.00 34.80 4.63
4007 5392 3.055963 CACTGGCAGATAGATGATCCCTC 60.056 52.174 23.66 0.00 34.80 4.30
4008 5393 2.905085 CACTGGCAGATAGATGATCCCT 59.095 50.000 23.66 0.00 34.80 4.20
4009 5394 2.636893 ACACTGGCAGATAGATGATCCC 59.363 50.000 23.66 0.00 34.80 3.85
4011 5396 4.523943 AGAGACACTGGCAGATAGATGATC 59.476 45.833 23.66 11.65 34.40 2.92
4012 5397 4.281435 CAGAGACACTGGCAGATAGATGAT 59.719 45.833 23.66 3.05 42.39 2.45
4013 5398 3.635836 CAGAGACACTGGCAGATAGATGA 59.364 47.826 23.66 0.00 42.39 2.92
4014 5399 3.979948 CAGAGACACTGGCAGATAGATG 58.020 50.000 23.66 11.12 42.39 2.90
4026 5411 6.058183 ACTAAAATCTTTGCACAGAGACACT 58.942 36.000 8.77 0.00 0.00 3.55
4027 5412 6.305693 ACTAAAATCTTTGCACAGAGACAC 57.694 37.500 8.77 0.00 0.00 3.67
4028 5413 5.177511 CGACTAAAATCTTTGCACAGAGACA 59.822 40.000 8.77 0.00 0.00 3.41
4029 5414 5.389935 CCGACTAAAATCTTTGCACAGAGAC 60.390 44.000 8.77 0.00 0.00 3.36
4030 5415 4.690748 CCGACTAAAATCTTTGCACAGAGA 59.309 41.667 8.77 2.51 0.00 3.10
4031 5416 4.690748 TCCGACTAAAATCTTTGCACAGAG 59.309 41.667 8.77 0.00 0.00 3.35
4032 5417 4.637276 TCCGACTAAAATCTTTGCACAGA 58.363 39.130 4.77 4.77 0.00 3.41
4071 5456 9.815306 ACTAGCTATCAGAAAACTAGATGGATA 57.185 33.333 0.00 0.00 35.42 2.59
4072 5457 8.584157 CACTAGCTATCAGAAAACTAGATGGAT 58.416 37.037 0.00 0.00 35.42 3.41
4073 5458 7.561722 ACACTAGCTATCAGAAAACTAGATGGA 59.438 37.037 0.00 0.00 35.42 3.41
4074 5459 7.721402 ACACTAGCTATCAGAAAACTAGATGG 58.279 38.462 0.00 0.00 35.42 3.51
4075 5460 8.409371 TGACACTAGCTATCAGAAAACTAGATG 58.591 37.037 0.00 7.46 35.42 2.90
4076 5461 8.526667 TGACACTAGCTATCAGAAAACTAGAT 57.473 34.615 0.00 0.00 35.42 1.98
4077 5462 7.939784 TGACACTAGCTATCAGAAAACTAGA 57.060 36.000 0.00 0.00 35.42 2.43
4078 5463 7.865385 GGATGACACTAGCTATCAGAAAACTAG 59.135 40.741 0.00 0.00 37.07 2.57
4079 5464 7.342026 TGGATGACACTAGCTATCAGAAAACTA 59.658 37.037 0.00 0.00 0.00 2.24
4123 5508 4.761739 GTGCCATATACTGGGTACTACGTA 59.238 45.833 0.00 0.00 46.06 3.57
4124 5509 3.571401 GTGCCATATACTGGGTACTACGT 59.429 47.826 0.00 0.00 46.06 3.57
4125 5510 3.365666 CGTGCCATATACTGGGTACTACG 60.366 52.174 0.00 0.00 46.06 3.51
4126 5511 3.613432 GCGTGCCATATACTGGGTACTAC 60.613 52.174 0.00 0.00 46.06 2.73
4148 5533 5.993441 TCCAGATACAATCACTGCACATATG 59.007 40.000 0.00 0.00 0.00 1.78
4179 5564 6.379988 ACACACCATGATACTACTGTACATCA 59.620 38.462 0.00 8.86 0.00 3.07
4199 5584 6.590292 AGCAAGTACATTACACATAGACACAC 59.410 38.462 0.00 0.00 0.00 3.82
4204 5589 7.412853 TGGTAGCAAGTACATTACACATAGA 57.587 36.000 0.00 0.00 32.62 1.98
4218 5603 4.944317 GCCTAAAAGAAGATGGTAGCAAGT 59.056 41.667 0.00 0.00 0.00 3.16
4220 5605 4.917385 TGCCTAAAAGAAGATGGTAGCAA 58.083 39.130 0.00 0.00 0.00 3.91
4248 5633 2.310538 CTCCCAAAGGAAGCAACAAGT 58.689 47.619 0.00 0.00 43.40 3.16
4263 5648 2.504175 GGATACAGTACAAAGCCTCCCA 59.496 50.000 0.00 0.00 0.00 4.37
4319 5704 9.605275 TCTGATATGAACTTTCTTAATGTGAGG 57.395 33.333 0.00 0.00 0.00 3.86
4340 5725 8.680903 CAGGAATTAATGCTGTTTACTTCTGAT 58.319 33.333 0.00 0.00 42.16 2.90
4341 5726 7.882791 TCAGGAATTAATGCTGTTTACTTCTGA 59.117 33.333 0.00 0.00 46.73 3.27
4396 5781 6.570692 ACATACTCCGTGATAAACTTACAGG 58.429 40.000 0.00 0.00 0.00 4.00
4431 5817 3.451141 TGCAATGTGGGAGAAAACAAC 57.549 42.857 0.00 0.00 0.00 3.32
4485 5874 9.185680 AGTTTATGGAAGTAAGTGTTTTGTTCT 57.814 29.630 0.00 0.00 0.00 3.01
4494 5883 6.653320 TGCAACCTAGTTTATGGAAGTAAGTG 59.347 38.462 0.00 0.00 0.00 3.16
4495 5884 6.775708 TGCAACCTAGTTTATGGAAGTAAGT 58.224 36.000 0.00 0.00 0.00 2.24
4592 5984 6.530534 CCGTATCAGAAGATAAAACAACGAGT 59.469 38.462 0.00 0.00 38.41 4.18
4603 5995 6.474140 TTAGTTTGGCCGTATCAGAAGATA 57.526 37.500 0.00 0.00 35.67 1.98
4615 6007 8.241367 AGTTTCAAGTAATATTTAGTTTGGCCG 58.759 33.333 0.00 0.00 0.00 6.13
4616 6008 9.569167 GAGTTTCAAGTAATATTTAGTTTGGCC 57.431 33.333 0.00 0.00 0.00 5.36
4640 6032 2.031012 TGGCGACTGGCTGTTGAG 59.969 61.111 15.22 4.00 42.94 3.02
4694 6088 3.489059 CGAAGCATCGGTTTGCCATATTT 60.489 43.478 2.82 0.00 45.32 1.40
4708 6110 2.907910 AGCATGTTCAACGAAGCATC 57.092 45.000 0.00 0.00 0.00 3.91
4714 6116 7.841915 TCTATGATAAAAGCATGTTCAACGA 57.158 32.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.