Multiple sequence alignment - TraesCS5D01G444800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G444800 chr5D 100.000 5019 0 0 1 5019 495614377 495619395 0.000000e+00 9269.0
1 TraesCS5D01G444800 chr5D 76.190 420 78 20 4269 4677 461913383 461912975 8.520000e-48 202.0
2 TraesCS5D01G444800 chr5D 97.727 44 1 0 1684 1727 472759235 472759192 5.390000e-10 76.8
3 TraesCS5D01G444800 chr5D 84.615 78 10 2 4888 4964 495625005 495625081 5.390000e-10 76.8
4 TraesCS5D01G444800 chr5B 95.337 1587 42 19 3443 5019 612672982 612674546 0.000000e+00 2492.0
5 TraesCS5D01G444800 chr5B 97.391 1380 35 1 2066 3445 612671446 612672824 0.000000e+00 2348.0
6 TraesCS5D01G444800 chr5B 89.870 1688 120 28 396 2052 612669798 612671465 0.000000e+00 2122.0
7 TraesCS5D01G444800 chr5B 75.476 420 81 20 4269 4677 567874760 567874352 8.580000e-43 185.0
8 TraesCS5D01G444800 chr5B 97.959 49 1 0 2410 2458 505457834 505457882 8.950000e-13 86.1
9 TraesCS5D01G444800 chr5B 84.211 76 10 2 4890 4964 612678735 612678809 6.970000e-09 73.1
10 TraesCS5D01G444800 chr5A 91.112 1699 84 27 3332 5019 619681889 619683531 0.000000e+00 2239.0
11 TraesCS5D01G444800 chr5A 88.163 1132 82 21 942 2068 619679208 619680292 0.000000e+00 1301.0
12 TraesCS5D01G444800 chr5A 88.462 858 53 19 2469 3283 619681031 619681885 0.000000e+00 994.0
13 TraesCS5D01G444800 chr5A 87.668 446 38 5 424 867 619678726 619679156 2.090000e-138 503.0
14 TraesCS5D01G444800 chr5A 75.952 420 79 20 4269 4677 581927111 581926703 3.960000e-46 196.0
15 TraesCS5D01G444800 chr5A 97.917 48 1 0 2410 2457 288258556 288258509 3.220000e-12 84.2
16 TraesCS5D01G444800 chr5A 84.211 76 10 2 4890 4964 619688266 619688340 6.970000e-09 73.1
17 TraesCS5D01G444800 chr5A 94.737 38 1 1 263 300 619678237 619678273 1.950000e-04 58.4
18 TraesCS5D01G444800 chr3D 85.778 450 47 11 453 898 468973699 468973263 1.270000e-125 460.0
19 TraesCS5D01G444800 chr3D 87.879 330 34 2 453 777 468969234 468968906 2.830000e-102 383.0
20 TraesCS5D01G444800 chr3D 87.500 296 26 11 454 745 544443964 544444252 1.040000e-86 331.0
21 TraesCS5D01G444800 chr3D 95.918 49 2 0 2410 2458 94246278 94246230 4.170000e-11 80.5
22 TraesCS5D01G444800 chr3D 95.918 49 2 0 2410 2458 442978507 442978555 4.170000e-11 80.5
23 TraesCS5D01G444800 chr3A 87.192 406 39 7 453 850 611198462 611198062 2.760000e-122 449.0
24 TraesCS5D01G444800 chr3A 86.946 406 40 7 453 850 611191945 611191545 1.280000e-120 444.0
25 TraesCS5D01G444800 chr3A 95.918 49 2 0 2410 2458 87928257 87928209 4.170000e-11 80.5
26 TraesCS5D01G444800 chr3B 85.885 418 48 8 440 850 622767304 622766891 7.720000e-118 435.0
27 TraesCS5D01G444800 chr3B 87.781 311 26 12 440 745 720264903 720265206 2.220000e-93 353.0
28 TraesCS5D01G444800 chr3B 86.364 110 11 3 1121 1228 737611629 737611736 3.170000e-22 117.0
29 TraesCS5D01G444800 chr3B 88.172 93 11 0 1121 1213 808793573 808793481 1.480000e-20 111.0
30 TraesCS5D01G444800 chr3B 97.778 45 1 0 1684 1728 295715758 295715714 1.500000e-10 78.7
31 TraesCS5D01G444800 chr3B 97.778 45 1 0 1684 1728 668632507 668632463 1.500000e-10 78.7
32 TraesCS5D01G444800 chr6A 85.841 113 15 1 3886 3998 518594321 518594432 8.830000e-23 119.0
33 TraesCS5D01G444800 chr6A 97.959 49 1 0 2410 2458 606565260 606565212 8.950000e-13 86.1
34 TraesCS5D01G444800 chr1B 86.111 108 15 0 1121 1228 185069794 185069901 3.170000e-22 117.0
35 TraesCS5D01G444800 chr1B 88.889 90 10 0 1121 1210 216267761 216267850 1.480000e-20 111.0
36 TraesCS5D01G444800 chr2D 97.959 49 1 0 2410 2458 618123856 618123808 8.950000e-13 86.1
37 TraesCS5D01G444800 chr6D 95.918 49 2 0 2410 2458 17302117 17302165 4.170000e-11 80.5
38 TraesCS5D01G444800 chr7B 97.778 45 1 0 1684 1728 663187752 663187708 1.500000e-10 78.7
39 TraesCS5D01G444800 chr4A 97.778 45 1 0 1684 1728 653454558 653454514 1.500000e-10 78.7
40 TraesCS5D01G444800 chr2B 97.778 45 1 0 1684 1728 76474934 76474890 1.500000e-10 78.7
41 TraesCS5D01G444800 chr1D 97.778 45 1 0 1684 1728 475306925 475306881 1.500000e-10 78.7
42 TraesCS5D01G444800 chr4D 95.745 47 2 0 1681 1727 466647764 466647810 5.390000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G444800 chr5D 495614377 495619395 5018 False 9269.000000 9269 100.000000 1 5019 1 chr5D.!!$F1 5018
1 TraesCS5D01G444800 chr5B 612669798 612674546 4748 False 2320.666667 2492 94.199333 396 5019 3 chr5B.!!$F3 4623
2 TraesCS5D01G444800 chr5A 619678237 619683531 5294 False 1019.080000 2239 90.028400 263 5019 5 chr5A.!!$F2 4756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.035152 TCGATGGCATCTGGCTGTTT 60.035 50.000 23.97 0.0 44.01 2.83 F
247 248 0.108138 ACGACCAGCAGAGGCAATAC 60.108 55.000 0.00 0.0 44.61 1.89 F
429 800 0.108567 GGTCCAGAGAAGAAGCGTCC 60.109 60.000 0.00 0.0 0.00 4.79 F
703 1077 0.241481 CCTCTTATAGCCTCGCCGAC 59.759 60.000 0.00 0.0 0.00 4.79 F
1298 1697 0.463204 CTGTCACCGATCCAGCATCT 59.537 55.000 0.00 0.0 0.00 2.90 F
1442 1843 1.131126 CGTTGCTGATGATTGGTGGTC 59.869 52.381 0.00 0.0 0.00 4.02 F
1670 2073 1.235756 TATGAGCTCAGGGAGGAGGA 58.764 55.000 22.96 0.0 35.41 3.71 F
1713 2116 2.094417 GGTGCTCGATTTAGTCTGTTGC 59.906 50.000 0.00 0.0 0.00 4.17 F
3558 4534 2.125310 TGTACCGAGGCAATGGCG 60.125 61.111 0.00 0.0 42.47 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1685 0.029433 TCGAACGAGATGCTGGATCG 59.971 55.000 3.41 0.0 42.04 3.69 R
1344 1745 0.179171 CCGTGACACGACGCTAATCT 60.179 55.000 28.83 0.0 46.05 2.40 R
1652 2055 0.341258 TTCCTCCTCCCTGAGCTCAT 59.659 55.000 18.63 0.0 0.00 2.90 R
2137 2689 0.763652 AGGCCACTAGATCATGCCAG 59.236 55.000 5.01 0.0 44.60 4.85 R
2405 3014 1.133513 TCCCATGTGCCAAAGTGTTCT 60.134 47.619 0.00 0.0 0.00 3.01 R
2672 3462 3.550842 GCATCAACACACCCAAGAGAAAC 60.551 47.826 0.00 0.0 0.00 2.78 R
3545 4521 1.586154 AAACTTCGCCATTGCCTCGG 61.586 55.000 0.00 0.0 0.00 4.63 R
3782 4767 3.018149 TGTTTACACCCACTGAAACACC 58.982 45.455 0.00 0.0 36.99 4.16 R
4388 5388 1.359117 GCTCGTCTACGGCTGCATA 59.641 57.895 0.50 0.0 40.29 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.682049 CTGTATAGCACGTTGAAGTACAC 57.318 43.478 0.00 0.00 0.00 2.90
31 32 5.381174 TGTATAGCACGTTGAAGTACACT 57.619 39.130 0.00 0.00 0.00 3.55
32 33 5.775686 TGTATAGCACGTTGAAGTACACTT 58.224 37.500 0.00 0.00 39.23 3.16
44 45 5.729974 GAAGTACACTTCGGAAAGTTGTT 57.270 39.130 6.37 0.00 43.28 2.83
45 46 6.833342 GAAGTACACTTCGGAAAGTTGTTA 57.167 37.500 6.37 0.00 43.28 2.41
46 47 7.237920 GAAGTACACTTCGGAAAGTTGTTAA 57.762 36.000 6.37 0.00 43.28 2.01
47 48 7.614124 AAGTACACTTCGGAAAGTTGTTAAA 57.386 32.000 0.00 0.00 43.28 1.52
48 49 7.242914 AGTACACTTCGGAAAGTTGTTAAAG 57.757 36.000 0.00 0.00 43.28 1.85
49 50 7.043565 AGTACACTTCGGAAAGTTGTTAAAGA 58.956 34.615 0.00 0.00 43.28 2.52
50 51 6.359480 ACACTTCGGAAAGTTGTTAAAGAG 57.641 37.500 0.00 0.00 43.28 2.85
51 52 5.878669 ACACTTCGGAAAGTTGTTAAAGAGT 59.121 36.000 0.00 0.00 43.28 3.24
52 53 6.036844 ACACTTCGGAAAGTTGTTAAAGAGTC 59.963 38.462 0.00 0.00 43.28 3.36
53 54 6.258068 CACTTCGGAAAGTTGTTAAAGAGTCT 59.742 38.462 0.00 0.00 43.28 3.24
54 55 6.822170 ACTTCGGAAAGTTGTTAAAGAGTCTT 59.178 34.615 0.00 0.00 43.28 3.01
55 56 6.598753 TCGGAAAGTTGTTAAAGAGTCTTG 57.401 37.500 6.06 0.00 0.00 3.02
56 57 5.007332 TCGGAAAGTTGTTAAAGAGTCTTGC 59.993 40.000 6.06 1.00 0.00 4.01
57 58 5.205565 GGAAAGTTGTTAAAGAGTCTTGCG 58.794 41.667 6.06 0.00 0.00 4.85
58 59 5.007332 GGAAAGTTGTTAAAGAGTCTTGCGA 59.993 40.000 6.06 0.00 0.00 5.10
59 60 6.431198 AAAGTTGTTAAAGAGTCTTGCGAA 57.569 33.333 6.06 0.00 0.00 4.70
60 61 5.405331 AGTTGTTAAAGAGTCTTGCGAAC 57.595 39.130 6.06 11.49 0.00 3.95
61 62 4.025979 AGTTGTTAAAGAGTCTTGCGAACG 60.026 41.667 6.06 0.00 0.00 3.95
62 63 3.708890 TGTTAAAGAGTCTTGCGAACGA 58.291 40.909 6.06 1.23 0.00 3.85
63 64 3.734231 TGTTAAAGAGTCTTGCGAACGAG 59.266 43.478 6.06 0.00 0.00 4.18
64 65 1.140816 AAAGAGTCTTGCGAACGAGC 58.859 50.000 6.06 0.00 37.71 5.03
65 66 1.004277 AAGAGTCTTGCGAACGAGCG 61.004 55.000 4.10 0.00 40.67 5.03
66 67 2.430921 AGTCTTGCGAACGAGCGG 60.431 61.111 0.00 0.00 40.67 5.52
67 68 3.479269 GTCTTGCGAACGAGCGGG 61.479 66.667 0.00 0.00 40.67 6.13
68 69 3.986006 TCTTGCGAACGAGCGGGT 61.986 61.111 0.00 0.00 40.67 5.28
69 70 3.041940 CTTGCGAACGAGCGGGTT 61.042 61.111 0.00 0.00 40.67 4.11
70 71 3.295228 CTTGCGAACGAGCGGGTTG 62.295 63.158 0.00 0.00 40.67 3.77
74 75 2.746277 GAACGAGCGGGTTGGCAT 60.746 61.111 0.00 0.00 34.64 4.40
75 76 3.039202 GAACGAGCGGGTTGGCATG 62.039 63.158 0.00 0.00 34.64 4.06
82 83 3.384532 GGGTTGGCATGGCAGGTG 61.385 66.667 22.17 0.00 0.00 4.00
83 84 4.073200 GGTTGGCATGGCAGGTGC 62.073 66.667 22.17 13.15 41.78 5.01
84 85 2.993264 GTTGGCATGGCAGGTGCT 60.993 61.111 22.17 0.00 42.16 4.40
85 86 2.992689 TTGGCATGGCAGGTGCTG 60.993 61.111 22.17 0.00 42.16 4.41
88 89 2.993264 GCATGGCAGGTGCTGGTT 60.993 61.111 5.84 0.00 41.70 3.67
89 90 2.998279 GCATGGCAGGTGCTGGTTC 61.998 63.158 5.84 0.00 41.70 3.62
90 91 2.360350 ATGGCAGGTGCTGGTTCG 60.360 61.111 1.26 0.00 41.70 3.95
91 92 2.894257 ATGGCAGGTGCTGGTTCGA 61.894 57.895 1.26 0.00 41.70 3.71
92 93 3.050275 GGCAGGTGCTGGTTCGAC 61.050 66.667 1.26 0.00 41.70 4.20
93 94 2.031163 GCAGGTGCTGGTTCGACT 59.969 61.111 0.00 0.00 38.21 4.18
94 95 1.598130 GCAGGTGCTGGTTCGACTT 60.598 57.895 0.00 0.00 38.21 3.01
95 96 1.845809 GCAGGTGCTGGTTCGACTTG 61.846 60.000 0.00 0.00 38.21 3.16
96 97 1.598130 AGGTGCTGGTTCGACTTGC 60.598 57.895 0.00 0.00 0.00 4.01
97 98 1.598130 GGTGCTGGTTCGACTTGCT 60.598 57.895 0.00 0.00 0.00 3.91
98 99 1.166531 GGTGCTGGTTCGACTTGCTT 61.167 55.000 0.00 0.00 0.00 3.91
99 100 0.040958 GTGCTGGTTCGACTTGCTTG 60.041 55.000 0.00 0.00 0.00 4.01
100 101 0.463654 TGCTGGTTCGACTTGCTTGT 60.464 50.000 0.00 0.00 0.00 3.16
101 102 0.040958 GCTGGTTCGACTTGCTTGTG 60.041 55.000 0.00 0.00 0.00 3.33
102 103 0.588252 CTGGTTCGACTTGCTTGTGG 59.412 55.000 0.00 0.00 0.00 4.17
103 104 0.107410 TGGTTCGACTTGCTTGTGGT 60.107 50.000 0.00 0.00 0.00 4.16
104 105 0.586802 GGTTCGACTTGCTTGTGGTC 59.413 55.000 0.00 0.00 0.00 4.02
106 107 4.027755 CGACTTGCTTGTGGTCGT 57.972 55.556 6.56 0.00 44.93 4.34
107 108 1.564622 CGACTTGCTTGTGGTCGTG 59.435 57.895 6.56 0.00 44.93 4.35
108 109 1.279840 GACTTGCTTGTGGTCGTGC 59.720 57.895 0.00 0.00 0.00 5.34
109 110 1.153168 ACTTGCTTGTGGTCGTGCT 60.153 52.632 0.00 0.00 0.00 4.40
110 111 1.280746 CTTGCTTGTGGTCGTGCTG 59.719 57.895 0.00 0.00 0.00 4.41
111 112 1.153269 TTGCTTGTGGTCGTGCTGA 60.153 52.632 0.00 0.00 0.00 4.26
112 113 0.746204 TTGCTTGTGGTCGTGCTGAA 60.746 50.000 0.00 0.00 0.00 3.02
113 114 1.279840 GCTTGTGGTCGTGCTGAAC 59.720 57.895 0.00 0.00 33.68 3.18
114 115 1.160329 GCTTGTGGTCGTGCTGAACT 61.160 55.000 0.00 0.00 34.43 3.01
115 116 0.583438 CTTGTGGTCGTGCTGAACTG 59.417 55.000 0.00 0.00 34.43 3.16
116 117 0.176910 TTGTGGTCGTGCTGAACTGA 59.823 50.000 0.00 0.00 34.43 3.41
117 118 0.392706 TGTGGTCGTGCTGAACTGAT 59.607 50.000 0.00 0.00 34.43 2.90
118 119 0.792640 GTGGTCGTGCTGAACTGATG 59.207 55.000 0.00 0.00 34.43 3.07
119 120 0.320683 TGGTCGTGCTGAACTGATGG 60.321 55.000 0.00 0.00 34.43 3.51
120 121 0.320771 GGTCGTGCTGAACTGATGGT 60.321 55.000 0.00 0.00 0.00 3.55
121 122 0.792640 GTCGTGCTGAACTGATGGTG 59.207 55.000 0.00 0.00 0.00 4.17
122 123 0.950555 TCGTGCTGAACTGATGGTGC 60.951 55.000 0.00 0.00 0.00 5.01
123 124 1.229975 CGTGCTGAACTGATGGTGCA 61.230 55.000 0.00 0.00 31.60 4.57
126 127 3.244764 CTGAACTGATGGTGCAGCT 57.755 52.632 18.08 2.29 43.83 4.24
127 128 2.391616 CTGAACTGATGGTGCAGCTA 57.608 50.000 18.08 3.92 43.83 3.32
128 129 2.277969 CTGAACTGATGGTGCAGCTAG 58.722 52.381 18.08 14.38 43.83 3.42
129 130 1.625315 TGAACTGATGGTGCAGCTAGT 59.375 47.619 18.08 14.99 39.51 2.57
130 131 2.005451 GAACTGATGGTGCAGCTAGTG 58.995 52.381 18.08 7.62 39.51 2.74
131 132 0.979665 ACTGATGGTGCAGCTAGTGT 59.020 50.000 18.08 8.24 39.51 3.55
132 133 2.179427 ACTGATGGTGCAGCTAGTGTA 58.821 47.619 18.08 0.00 39.51 2.90
133 134 2.167281 ACTGATGGTGCAGCTAGTGTAG 59.833 50.000 18.08 9.08 39.51 2.74
134 135 1.482182 TGATGGTGCAGCTAGTGTAGG 59.518 52.381 18.08 0.00 0.00 3.18
135 136 0.179000 ATGGTGCAGCTAGTGTAGGC 59.821 55.000 18.08 0.00 0.00 3.93
136 137 1.191489 TGGTGCAGCTAGTGTAGGCA 61.191 55.000 18.08 0.00 0.00 4.75
137 138 0.460987 GGTGCAGCTAGTGTAGGCAG 60.461 60.000 9.07 0.00 34.78 4.85
138 139 0.247736 GTGCAGCTAGTGTAGGCAGT 59.752 55.000 0.00 0.00 34.78 4.40
139 140 0.247460 TGCAGCTAGTGTAGGCAGTG 59.753 55.000 0.00 0.00 0.00 3.66
140 141 0.532573 GCAGCTAGTGTAGGCAGTGA 59.467 55.000 0.00 0.00 0.00 3.41
141 142 1.137872 GCAGCTAGTGTAGGCAGTGAT 59.862 52.381 0.00 0.00 0.00 3.06
142 143 2.362397 GCAGCTAGTGTAGGCAGTGATA 59.638 50.000 0.00 0.00 0.00 2.15
143 144 3.551863 GCAGCTAGTGTAGGCAGTGATAG 60.552 52.174 0.00 0.00 0.00 2.08
144 145 3.885901 CAGCTAGTGTAGGCAGTGATAGA 59.114 47.826 0.00 0.00 0.00 1.98
145 146 4.522405 CAGCTAGTGTAGGCAGTGATAGAT 59.478 45.833 0.00 0.00 0.00 1.98
146 147 5.010516 CAGCTAGTGTAGGCAGTGATAGATT 59.989 44.000 0.00 0.00 0.00 2.40
147 148 5.242838 AGCTAGTGTAGGCAGTGATAGATTC 59.757 44.000 0.00 0.00 0.00 2.52
148 149 4.946478 AGTGTAGGCAGTGATAGATTCC 57.054 45.455 0.00 0.00 0.00 3.01
149 150 4.551671 AGTGTAGGCAGTGATAGATTCCT 58.448 43.478 0.00 0.00 0.00 3.36
150 151 4.586841 AGTGTAGGCAGTGATAGATTCCTC 59.413 45.833 0.00 0.00 0.00 3.71
151 152 3.898123 TGTAGGCAGTGATAGATTCCTCC 59.102 47.826 0.00 0.00 0.00 4.30
152 153 3.342926 AGGCAGTGATAGATTCCTCCT 57.657 47.619 0.00 0.00 0.00 3.69
153 154 3.663198 AGGCAGTGATAGATTCCTCCTT 58.337 45.455 0.00 0.00 0.00 3.36
154 155 3.645687 AGGCAGTGATAGATTCCTCCTTC 59.354 47.826 0.00 0.00 0.00 3.46
155 156 3.645687 GGCAGTGATAGATTCCTCCTTCT 59.354 47.826 0.00 0.00 0.00 2.85
156 157 4.262420 GGCAGTGATAGATTCCTCCTTCTC 60.262 50.000 0.00 0.00 0.00 2.87
157 158 4.588528 GCAGTGATAGATTCCTCCTTCTCT 59.411 45.833 0.00 0.00 0.00 3.10
158 159 5.509501 GCAGTGATAGATTCCTCCTTCTCTG 60.510 48.000 0.00 0.00 0.00 3.35
159 160 5.832595 CAGTGATAGATTCCTCCTTCTCTGA 59.167 44.000 0.00 0.00 0.00 3.27
160 161 5.833131 AGTGATAGATTCCTCCTTCTCTGAC 59.167 44.000 0.00 0.00 0.00 3.51
161 162 4.824537 TGATAGATTCCTCCTTCTCTGACG 59.175 45.833 0.00 0.00 0.00 4.35
162 163 3.094484 AGATTCCTCCTTCTCTGACGT 57.906 47.619 0.00 0.00 0.00 4.34
163 164 3.436243 AGATTCCTCCTTCTCTGACGTT 58.564 45.455 0.00 0.00 0.00 3.99
164 165 3.194542 AGATTCCTCCTTCTCTGACGTTG 59.805 47.826 0.00 0.00 0.00 4.10
165 166 1.996798 TCCTCCTTCTCTGACGTTGT 58.003 50.000 0.00 0.00 0.00 3.32
166 167 1.613925 TCCTCCTTCTCTGACGTTGTG 59.386 52.381 0.00 0.00 0.00 3.33
167 168 1.341531 CCTCCTTCTCTGACGTTGTGT 59.658 52.381 0.00 0.00 0.00 3.72
168 169 2.224066 CCTCCTTCTCTGACGTTGTGTT 60.224 50.000 0.00 0.00 0.00 3.32
169 170 3.458189 CTCCTTCTCTGACGTTGTGTTT 58.542 45.455 0.00 0.00 0.00 2.83
170 171 3.454375 TCCTTCTCTGACGTTGTGTTTC 58.546 45.455 0.00 0.00 0.00 2.78
171 172 3.118920 TCCTTCTCTGACGTTGTGTTTCA 60.119 43.478 0.00 0.00 0.00 2.69
172 173 3.621268 CCTTCTCTGACGTTGTGTTTCAA 59.379 43.478 0.00 0.00 0.00 2.69
180 181 2.395651 TTGTGTTTCAACCCGACGG 58.604 52.632 6.99 6.99 0.00 4.79
181 182 1.716826 TTGTGTTTCAACCCGACGGC 61.717 55.000 8.86 0.00 0.00 5.68
182 183 1.890510 GTGTTTCAACCCGACGGCT 60.891 57.895 8.86 0.00 0.00 5.52
183 184 1.890041 TGTTTCAACCCGACGGCTG 60.890 57.895 8.86 8.14 0.00 4.85
184 185 2.281208 TTTCAACCCGACGGCTGG 60.281 61.111 8.86 0.00 0.00 4.85
185 186 2.809307 TTTCAACCCGACGGCTGGA 61.809 57.895 5.40 0.00 0.00 3.86
186 187 2.725203 TTTCAACCCGACGGCTGGAG 62.725 60.000 5.40 0.00 0.00 3.86
187 188 4.003788 CAACCCGACGGCTGGAGT 62.004 66.667 5.40 0.00 0.00 3.85
188 189 3.692406 AACCCGACGGCTGGAGTC 61.692 66.667 5.40 0.00 35.41 3.36
196 197 2.507944 GGCTGGAGTCGATGGCAT 59.492 61.111 0.00 0.00 0.00 4.40
197 198 1.596477 GGCTGGAGTCGATGGCATC 60.596 63.158 17.58 17.58 0.00 3.91
198 199 1.445095 GCTGGAGTCGATGGCATCT 59.555 57.895 23.97 6.67 0.00 2.90
199 200 0.879400 GCTGGAGTCGATGGCATCTG 60.879 60.000 23.97 17.16 0.00 2.90
200 201 0.249784 CTGGAGTCGATGGCATCTGG 60.250 60.000 23.97 10.63 0.00 3.86
201 202 1.596477 GGAGTCGATGGCATCTGGC 60.596 63.158 23.97 18.26 43.74 4.85
202 203 1.445095 GAGTCGATGGCATCTGGCT 59.555 57.895 23.97 22.13 44.01 4.75
203 204 0.879400 GAGTCGATGGCATCTGGCTG 60.879 60.000 23.90 11.00 44.01 4.85
204 205 1.153289 GTCGATGGCATCTGGCTGT 60.153 57.895 23.97 0.00 44.01 4.40
205 206 0.745845 GTCGATGGCATCTGGCTGTT 60.746 55.000 23.97 0.00 44.01 3.16
206 207 0.035152 TCGATGGCATCTGGCTGTTT 60.035 50.000 23.97 0.00 44.01 2.83
207 208 0.379669 CGATGGCATCTGGCTGTTTC 59.620 55.000 23.97 0.00 44.01 2.78
208 209 1.760192 GATGGCATCTGGCTGTTTCT 58.240 50.000 20.08 0.00 44.01 2.52
209 210 1.404391 GATGGCATCTGGCTGTTTCTG 59.596 52.381 20.08 0.00 44.01 3.02
210 211 0.111061 TGGCATCTGGCTGTTTCTGT 59.889 50.000 5.30 0.00 44.01 3.41
211 212 1.251251 GGCATCTGGCTGTTTCTGTT 58.749 50.000 0.00 0.00 44.01 3.16
212 213 1.615392 GGCATCTGGCTGTTTCTGTTT 59.385 47.619 0.00 0.00 44.01 2.83
213 214 2.608752 GGCATCTGGCTGTTTCTGTTTG 60.609 50.000 0.00 0.00 44.01 2.93
214 215 2.669364 CATCTGGCTGTTTCTGTTTGC 58.331 47.619 0.00 0.00 0.00 3.68
215 216 2.057137 TCTGGCTGTTTCTGTTTGCT 57.943 45.000 0.00 0.00 0.00 3.91
216 217 3.207265 TCTGGCTGTTTCTGTTTGCTA 57.793 42.857 0.00 0.00 0.00 3.49
217 218 2.878406 TCTGGCTGTTTCTGTTTGCTAC 59.122 45.455 0.00 0.00 0.00 3.58
218 219 1.601903 TGGCTGTTTCTGTTTGCTACG 59.398 47.619 0.00 0.00 0.00 3.51
219 220 1.871039 GGCTGTTTCTGTTTGCTACGA 59.129 47.619 0.00 0.00 0.00 3.43
220 221 2.289547 GGCTGTTTCTGTTTGCTACGAA 59.710 45.455 0.00 0.00 0.00 3.85
221 222 3.289076 GCTGTTTCTGTTTGCTACGAAC 58.711 45.455 0.00 0.00 0.00 3.95
222 223 3.242608 GCTGTTTCTGTTTGCTACGAACA 60.243 43.478 0.00 0.74 35.81 3.18
223 224 4.729458 GCTGTTTCTGTTTGCTACGAACAA 60.729 41.667 2.28 0.00 36.64 2.83
224 225 5.298197 TGTTTCTGTTTGCTACGAACAAA 57.702 34.783 2.28 0.00 36.64 2.83
225 226 5.700846 TGTTTCTGTTTGCTACGAACAAAA 58.299 33.333 2.28 3.93 38.64 2.44
226 227 6.326375 TGTTTCTGTTTGCTACGAACAAAAT 58.674 32.000 2.28 0.00 38.64 1.82
227 228 6.809196 TGTTTCTGTTTGCTACGAACAAAATT 59.191 30.769 2.28 0.00 38.64 1.82
228 229 7.968956 TGTTTCTGTTTGCTACGAACAAAATTA 59.031 29.630 2.28 0.00 38.64 1.40
229 230 7.901874 TTCTGTTTGCTACGAACAAAATTAC 57.098 32.000 2.28 0.00 38.64 1.89
230 231 6.130723 TCTGTTTGCTACGAACAAAATTACG 58.869 36.000 2.28 0.00 38.64 3.18
231 232 6.018913 TCTGTTTGCTACGAACAAAATTACGA 60.019 34.615 2.28 0.00 38.64 3.43
232 233 5.902981 TGTTTGCTACGAACAAAATTACGAC 59.097 36.000 0.00 0.00 38.64 4.34
233 234 4.650545 TGCTACGAACAAAATTACGACC 57.349 40.909 0.00 0.00 0.00 4.79
234 235 4.056740 TGCTACGAACAAAATTACGACCA 58.943 39.130 0.00 0.00 0.00 4.02
235 236 4.150980 TGCTACGAACAAAATTACGACCAG 59.849 41.667 0.00 0.00 0.00 4.00
236 237 3.531262 ACGAACAAAATTACGACCAGC 57.469 42.857 0.00 0.00 0.00 4.85
237 238 2.873472 ACGAACAAAATTACGACCAGCA 59.127 40.909 0.00 0.00 0.00 4.41
238 239 3.059188 ACGAACAAAATTACGACCAGCAG 60.059 43.478 0.00 0.00 0.00 4.24
239 240 3.185594 CGAACAAAATTACGACCAGCAGA 59.814 43.478 0.00 0.00 0.00 4.26
240 241 4.666655 CGAACAAAATTACGACCAGCAGAG 60.667 45.833 0.00 0.00 0.00 3.35
241 242 3.074412 ACAAAATTACGACCAGCAGAGG 58.926 45.455 0.00 0.00 0.00 3.69
242 243 1.739067 AAATTACGACCAGCAGAGGC 58.261 50.000 0.00 0.00 41.61 4.70
243 244 0.613260 AATTACGACCAGCAGAGGCA 59.387 50.000 0.00 0.00 44.61 4.75
244 245 0.613260 ATTACGACCAGCAGAGGCAA 59.387 50.000 0.00 0.00 44.61 4.52
245 246 0.613260 TTACGACCAGCAGAGGCAAT 59.387 50.000 0.00 0.00 44.61 3.56
246 247 1.480789 TACGACCAGCAGAGGCAATA 58.519 50.000 0.00 0.00 44.61 1.90
247 248 0.108138 ACGACCAGCAGAGGCAATAC 60.108 55.000 0.00 0.00 44.61 1.89
248 249 0.176680 CGACCAGCAGAGGCAATACT 59.823 55.000 0.00 0.00 44.61 2.12
249 250 1.409064 CGACCAGCAGAGGCAATACTA 59.591 52.381 0.00 0.00 44.61 1.82
250 251 2.159099 CGACCAGCAGAGGCAATACTAA 60.159 50.000 0.00 0.00 44.61 2.24
251 252 3.493350 CGACCAGCAGAGGCAATACTAAT 60.493 47.826 0.00 0.00 44.61 1.73
252 253 3.812053 GACCAGCAGAGGCAATACTAATG 59.188 47.826 0.00 0.00 44.61 1.90
253 254 3.455910 ACCAGCAGAGGCAATACTAATGA 59.544 43.478 0.00 0.00 44.61 2.57
254 255 4.063689 CCAGCAGAGGCAATACTAATGAG 58.936 47.826 0.00 0.00 44.61 2.90
255 256 3.497640 CAGCAGAGGCAATACTAATGAGC 59.502 47.826 0.00 0.00 44.61 4.26
256 257 2.810852 GCAGAGGCAATACTAATGAGCC 59.189 50.000 0.00 0.00 45.54 4.70
259 260 1.884235 GGCAATACTAATGAGCCGCT 58.116 50.000 0.00 0.00 35.42 5.52
260 261 2.222027 GGCAATACTAATGAGCCGCTT 58.778 47.619 0.00 0.00 35.42 4.68
261 262 2.031682 GGCAATACTAATGAGCCGCTTG 60.032 50.000 0.00 0.00 35.42 4.01
290 291 4.215613 GCCACCTGTTCTCGAGTAATTTTT 59.784 41.667 13.13 0.00 0.00 1.94
292 293 5.334879 CCACCTGTTCTCGAGTAATTTTTGG 60.335 44.000 13.13 8.51 0.00 3.28
294 295 6.017440 CACCTGTTCTCGAGTAATTTTTGGAA 60.017 38.462 13.13 0.00 0.00 3.53
295 296 6.017357 ACCTGTTCTCGAGTAATTTTTGGAAC 60.017 38.462 13.13 6.14 34.35 3.62
296 297 6.017440 CCTGTTCTCGAGTAATTTTTGGAACA 60.017 38.462 13.13 10.36 39.20 3.18
297 298 6.954944 TGTTCTCGAGTAATTTTTGGAACAG 58.045 36.000 13.13 0.00 42.39 3.16
300 301 7.186021 TCTCGAGTAATTTTTGGAACAGTTC 57.814 36.000 13.13 4.52 42.39 3.01
301 302 6.990349 TCTCGAGTAATTTTTGGAACAGTTCT 59.010 34.615 13.13 0.00 42.39 3.01
302 303 7.497909 TCTCGAGTAATTTTTGGAACAGTTCTT 59.502 33.333 13.13 1.29 42.39 2.52
303 304 7.992008 TCGAGTAATTTTTGGAACAGTTCTTT 58.008 30.769 13.13 1.59 42.39 2.52
304 305 8.126700 TCGAGTAATTTTTGGAACAGTTCTTTC 58.873 33.333 13.13 0.00 42.39 2.62
305 306 8.129211 CGAGTAATTTTTGGAACAGTTCTTTCT 58.871 33.333 13.13 2.04 42.39 2.52
306 307 9.452065 GAGTAATTTTTGGAACAGTTCTTTCTC 57.548 33.333 13.13 7.25 42.39 2.87
307 308 8.129211 AGTAATTTTTGGAACAGTTCTTTCTCG 58.871 33.333 13.13 0.00 42.39 4.04
308 309 6.693315 ATTTTTGGAACAGTTCTTTCTCGA 57.307 33.333 13.13 0.00 42.39 4.04
309 310 5.734855 TTTTGGAACAGTTCTTTCTCGAG 57.265 39.130 13.13 5.93 42.39 4.04
310 311 3.386768 TGGAACAGTTCTTTCTCGAGG 57.613 47.619 13.56 0.00 0.00 4.63
312 313 3.060602 GGAACAGTTCTTTCTCGAGGTG 58.939 50.000 13.56 3.29 0.00 4.00
315 316 2.064762 CAGTTCTTTCTCGAGGTGCTG 58.935 52.381 13.56 8.88 0.00 4.41
318 319 2.048222 TTTCTCGAGGTGCTGCGG 60.048 61.111 13.56 0.00 0.00 5.69
319 320 2.771763 CTTTCTCGAGGTGCTGCGGT 62.772 60.000 13.56 0.00 0.00 5.68
320 321 3.573772 TTCTCGAGGTGCTGCGGTG 62.574 63.158 13.56 0.00 0.00 4.94
327 698 4.101448 GTGCTGCGGTGGAGGGAT 62.101 66.667 0.00 0.00 0.00 3.85
333 704 1.043116 TGCGGTGGAGGGATAGTCTG 61.043 60.000 0.00 0.00 0.00 3.51
338 709 2.467880 GTGGAGGGATAGTCTGAACCA 58.532 52.381 0.00 0.00 0.00 3.67
339 710 3.041946 GTGGAGGGATAGTCTGAACCAT 58.958 50.000 0.00 0.00 0.00 3.55
340 711 3.456277 GTGGAGGGATAGTCTGAACCATT 59.544 47.826 0.00 0.00 0.00 3.16
341 712 3.455910 TGGAGGGATAGTCTGAACCATTG 59.544 47.826 0.00 0.00 0.00 2.82
342 713 3.181450 GGAGGGATAGTCTGAACCATTGG 60.181 52.174 0.00 0.00 0.00 3.16
343 714 3.711704 GAGGGATAGTCTGAACCATTGGA 59.288 47.826 10.37 0.00 0.00 3.53
344 715 3.456277 AGGGATAGTCTGAACCATTGGAC 59.544 47.826 10.37 3.79 0.00 4.02
346 717 4.080299 GGGATAGTCTGAACCATTGGACTT 60.080 45.833 10.37 0.00 39.39 3.01
347 718 5.130477 GGGATAGTCTGAACCATTGGACTTA 59.870 44.000 10.37 0.00 39.39 2.24
349 720 6.127026 GGATAGTCTGAACCATTGGACTTACT 60.127 42.308 10.37 8.39 39.39 2.24
350 721 5.153950 AGTCTGAACCATTGGACTTACTC 57.846 43.478 10.37 0.00 35.82 2.59
351 722 4.020128 AGTCTGAACCATTGGACTTACTCC 60.020 45.833 10.37 0.00 35.82 3.85
352 723 4.020128 GTCTGAACCATTGGACTTACTCCT 60.020 45.833 10.37 0.00 40.26 3.69
353 724 4.597507 TCTGAACCATTGGACTTACTCCTT 59.402 41.667 10.37 0.00 40.26 3.36
354 725 4.906618 TGAACCATTGGACTTACTCCTTC 58.093 43.478 10.37 0.00 40.26 3.46
355 726 4.349636 TGAACCATTGGACTTACTCCTTCA 59.650 41.667 10.37 2.70 40.26 3.02
356 727 4.559862 ACCATTGGACTTACTCCTTCAG 57.440 45.455 10.37 0.00 40.26 3.02
357 728 3.274288 CCATTGGACTTACTCCTTCAGC 58.726 50.000 0.00 0.00 40.26 4.26
358 729 3.307691 CCATTGGACTTACTCCTTCAGCA 60.308 47.826 0.00 0.00 40.26 4.41
359 730 3.402628 TTGGACTTACTCCTTCAGCAC 57.597 47.619 0.00 0.00 40.26 4.40
360 731 2.609747 TGGACTTACTCCTTCAGCACT 58.390 47.619 0.00 0.00 40.26 4.40
361 732 2.300152 TGGACTTACTCCTTCAGCACTG 59.700 50.000 0.00 0.00 40.26 3.66
362 733 2.563179 GGACTTACTCCTTCAGCACTGA 59.437 50.000 0.00 0.00 35.89 3.41
363 734 3.580731 GACTTACTCCTTCAGCACTGAC 58.419 50.000 0.00 0.00 39.66 3.51
368 739 6.663953 ACTTACTCCTTCAGCACTGACTATTA 59.336 38.462 0.00 0.00 39.66 0.98
377 748 3.686726 AGCACTGACTATTACAAAGCTGC 59.313 43.478 0.00 0.00 0.00 5.25
393 764 3.060615 GCAGGAGCACAGCCCAAG 61.061 66.667 0.00 0.00 41.58 3.61
398 769 0.322816 GGAGCACAGCCCAAGATTCA 60.323 55.000 0.00 0.00 0.00 2.57
400 771 0.323178 AGCACAGCCCAAGATTCAGG 60.323 55.000 0.00 0.00 0.00 3.86
411 782 4.702131 CCCAAGATTCAGGTTTTAGACAGG 59.298 45.833 0.00 0.00 0.00 4.00
418 789 3.578716 TCAGGTTTTAGACAGGTCCAGAG 59.421 47.826 0.00 0.00 0.00 3.35
419 790 3.578716 CAGGTTTTAGACAGGTCCAGAGA 59.421 47.826 0.00 0.00 0.00 3.10
420 791 4.040461 CAGGTTTTAGACAGGTCCAGAGAA 59.960 45.833 0.00 0.00 0.00 2.87
421 792 4.284746 AGGTTTTAGACAGGTCCAGAGAAG 59.715 45.833 0.00 0.00 0.00 2.85
423 794 5.221661 GGTTTTAGACAGGTCCAGAGAAGAA 60.222 44.000 0.00 0.00 0.00 2.52
424 795 5.730296 TTTAGACAGGTCCAGAGAAGAAG 57.270 43.478 0.00 0.00 0.00 2.85
425 796 1.899142 AGACAGGTCCAGAGAAGAAGC 59.101 52.381 0.00 0.00 0.00 3.86
426 797 0.605589 ACAGGTCCAGAGAAGAAGCG 59.394 55.000 0.00 0.00 0.00 4.68
427 798 0.605589 CAGGTCCAGAGAAGAAGCGT 59.394 55.000 0.00 0.00 0.00 5.07
429 800 0.108567 GGTCCAGAGAAGAAGCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
430 801 0.456995 GTCCAGAGAAGAAGCGTCCG 60.457 60.000 0.00 0.00 0.00 4.79
431 802 1.807573 CCAGAGAAGAAGCGTCCGC 60.808 63.158 2.94 2.94 42.33 5.54
468 842 1.627834 TGGATTTGATTTGGTTGGGGC 59.372 47.619 0.00 0.00 0.00 5.80
703 1077 0.241481 CCTCTTATAGCCTCGCCGAC 59.759 60.000 0.00 0.00 0.00 4.79
744 1118 1.278238 GCGATGTGGGACTAAACGAG 58.722 55.000 0.00 0.00 0.00 4.18
826 1204 2.981350 GGGCTTTCGTTTCCGCCA 60.981 61.111 0.00 0.00 44.23 5.69
966 1362 3.071459 GCAAGTCGTCATCGCACGG 62.071 63.158 2.24 0.00 40.35 4.94
1247 1646 2.509336 CGCCCTCAAGCAGGTACG 60.509 66.667 0.00 0.00 41.51 3.67
1282 1681 4.082523 CCACACGCGATCCCCTGT 62.083 66.667 15.93 1.51 0.00 4.00
1283 1682 2.509336 CACACGCGATCCCCTGTC 60.509 66.667 15.93 0.00 0.00 3.51
1284 1683 2.994995 ACACGCGATCCCCTGTCA 60.995 61.111 15.93 0.00 0.00 3.58
1286 1685 3.771160 ACGCGATCCCCTGTCACC 61.771 66.667 15.93 0.00 0.00 4.02
1287 1686 4.873129 CGCGATCCCCTGTCACCG 62.873 72.222 0.00 0.00 0.00 4.94
1288 1687 3.458163 GCGATCCCCTGTCACCGA 61.458 66.667 0.00 0.00 0.00 4.69
1289 1688 2.797278 GCGATCCCCTGTCACCGAT 61.797 63.158 0.00 0.00 0.00 4.18
1291 1690 1.749033 GATCCCCTGTCACCGATCC 59.251 63.158 0.00 0.00 0.00 3.36
1292 1691 1.002921 ATCCCCTGTCACCGATCCA 59.997 57.895 0.00 0.00 0.00 3.41
1293 1692 1.050988 ATCCCCTGTCACCGATCCAG 61.051 60.000 0.00 0.00 0.00 3.86
1294 1693 2.187946 CCCTGTCACCGATCCAGC 59.812 66.667 0.00 0.00 0.00 4.85
1295 1694 2.659063 CCCTGTCACCGATCCAGCA 61.659 63.158 0.00 0.00 0.00 4.41
1296 1695 1.524002 CCTGTCACCGATCCAGCAT 59.476 57.895 0.00 0.00 0.00 3.79
1297 1696 0.531532 CCTGTCACCGATCCAGCATC 60.532 60.000 0.00 0.00 0.00 3.91
1298 1697 0.463204 CTGTCACCGATCCAGCATCT 59.537 55.000 0.00 0.00 0.00 2.90
1342 1743 2.149973 TCTCCCCTAGGGTTTCGTAC 57.850 55.000 26.66 0.00 44.74 3.67
1343 1744 1.642762 TCTCCCCTAGGGTTTCGTACT 59.357 52.381 26.66 0.00 44.74 2.73
1344 1745 2.852449 TCTCCCCTAGGGTTTCGTACTA 59.148 50.000 26.66 0.00 44.74 1.82
1370 1771 4.934942 TCGTGTCACGGCCGTGTG 62.935 66.667 46.56 34.94 45.55 3.82
1372 1773 3.636043 GTGTCACGGCCGTGTGTG 61.636 66.667 46.56 29.17 45.55 3.82
1373 1774 4.150203 TGTCACGGCCGTGTGTGT 62.150 61.111 46.56 18.20 45.55 3.72
1374 1775 3.636043 GTCACGGCCGTGTGTGTG 61.636 66.667 46.56 28.09 45.55 3.82
1442 1843 1.131126 CGTTGCTGATGATTGGTGGTC 59.869 52.381 0.00 0.00 0.00 4.02
1591 1992 5.644206 GGAAGAAGGTGAGATTTGTAACTCC 59.356 44.000 0.00 0.00 32.84 3.85
1603 2004 1.343142 TGTAACTCCACGTCACTGCAT 59.657 47.619 0.00 0.00 0.00 3.96
1604 2005 1.726791 GTAACTCCACGTCACTGCATG 59.273 52.381 0.00 0.00 0.00 4.06
1620 2021 2.486951 CATGAATGCTAGGTTGCTGC 57.513 50.000 0.00 0.00 0.00 5.25
1621 2022 1.746787 CATGAATGCTAGGTTGCTGCA 59.253 47.619 0.00 0.00 41.13 4.41
1639 2041 6.172630 TGCTGCAACATTGATTACTTAGAGA 58.827 36.000 0.00 0.00 0.00 3.10
1668 2071 3.708631 TCTTTTATGAGCTCAGGGAGGAG 59.291 47.826 22.96 13.95 37.97 3.69
1669 2072 2.094100 TTATGAGCTCAGGGAGGAGG 57.906 55.000 22.96 0.00 35.41 4.30
1670 2073 1.235756 TATGAGCTCAGGGAGGAGGA 58.764 55.000 22.96 0.00 35.41 3.71
1685 2088 4.223032 GGAGGAGGAACTTGTCTATGTTCA 59.777 45.833 7.91 0.00 41.55 3.18
1694 2097 4.141251 ACTTGTCTATGTTCAAACCAGGGT 60.141 41.667 0.00 0.00 0.00 4.34
1713 2116 2.094417 GGTGCTCGATTTAGTCTGTTGC 59.906 50.000 0.00 0.00 0.00 4.17
1727 2130 5.605534 AGTCTGTTGCGAATGCTAATAGAT 58.394 37.500 0.00 0.00 43.34 1.98
1744 2147 8.893727 GCTAATAGATGGTTGAACACAAGTTAT 58.106 33.333 0.00 0.00 38.30 1.89
1746 2149 8.635765 AATAGATGGTTGAACACAAGTTATGT 57.364 30.769 0.00 0.00 45.34 2.29
1818 2221 2.228822 CCATAGTTCAAAAAGGCGCTGT 59.771 45.455 7.64 0.00 0.00 4.40
1844 2247 5.236478 CGCTAATTATGTGTTTAGGGACCTG 59.764 44.000 0.00 0.00 39.45 4.00
1950 2353 4.090057 GACCAAAGCGCTGCGTCC 62.090 66.667 24.04 7.78 0.00 4.79
2027 2430 7.117236 CCTGTCGTCTAGTGTTTAATGCTAAAA 59.883 37.037 0.00 0.00 0.00 1.52
2052 2455 8.894768 ATAGAAGAGATTGTTACTTATGGTGC 57.105 34.615 0.00 0.00 0.00 5.01
2053 2456 6.951971 AGAAGAGATTGTTACTTATGGTGCT 58.048 36.000 0.00 0.00 0.00 4.40
2054 2457 8.079211 AGAAGAGATTGTTACTTATGGTGCTA 57.921 34.615 0.00 0.00 0.00 3.49
2055 2458 8.709308 AGAAGAGATTGTTACTTATGGTGCTAT 58.291 33.333 0.00 0.00 0.00 2.97
2056 2459 8.668510 AAGAGATTGTTACTTATGGTGCTATG 57.331 34.615 0.00 0.00 0.00 2.23
2057 2460 7.220030 AGAGATTGTTACTTATGGTGCTATGG 58.780 38.462 0.00 0.00 0.00 2.74
2058 2461 7.071196 AGAGATTGTTACTTATGGTGCTATGGA 59.929 37.037 0.00 0.00 0.00 3.41
2059 2462 6.992715 AGATTGTTACTTATGGTGCTATGGAC 59.007 38.462 0.00 0.00 0.00 4.02
2060 2463 5.685520 TGTTACTTATGGTGCTATGGACA 57.314 39.130 0.00 0.00 0.00 4.02
2061 2464 6.247229 TGTTACTTATGGTGCTATGGACAT 57.753 37.500 0.00 0.00 0.00 3.06
2062 2465 6.658849 TGTTACTTATGGTGCTATGGACATT 58.341 36.000 0.00 0.00 0.00 2.71
2063 2466 7.797062 TGTTACTTATGGTGCTATGGACATTA 58.203 34.615 0.00 0.00 0.00 1.90
2064 2467 8.436778 TGTTACTTATGGTGCTATGGACATTAT 58.563 33.333 0.00 0.00 0.00 1.28
2065 2468 9.938280 GTTACTTATGGTGCTATGGACATTATA 57.062 33.333 0.00 0.00 0.00 0.98
2067 2470 8.435931 ACTTATGGTGCTATGGACATTATAGA 57.564 34.615 0.00 0.00 31.26 1.98
2068 2471 8.535335 ACTTATGGTGCTATGGACATTATAGAG 58.465 37.037 0.00 0.00 31.26 2.43
2069 2472 8.664669 TTATGGTGCTATGGACATTATAGAGA 57.335 34.615 0.00 0.00 31.26 3.10
2070 2473 7.746243 ATGGTGCTATGGACATTATAGAGAT 57.254 36.000 0.00 0.00 31.26 2.75
2071 2474 7.559335 TGGTGCTATGGACATTATAGAGATT 57.441 36.000 0.00 0.00 31.26 2.40
2072 2475 7.389232 TGGTGCTATGGACATTATAGAGATTG 58.611 38.462 0.00 0.00 31.26 2.67
2073 2476 7.016563 TGGTGCTATGGACATTATAGAGATTGT 59.983 37.037 0.00 0.00 31.26 2.71
2074 2477 7.880195 GGTGCTATGGACATTATAGAGATTGTT 59.120 37.037 0.00 0.00 31.26 2.83
2075 2478 9.929180 GTGCTATGGACATTATAGAGATTGTTA 57.071 33.333 0.00 0.00 31.26 2.41
2266 2821 3.134804 GGCTAGGGCACTCTTTTCTGATA 59.865 47.826 0.00 0.00 40.87 2.15
2619 3408 7.285401 TGTTCATGCTTCTTTTTCTCTACCTTT 59.715 33.333 0.00 0.00 0.00 3.11
2626 3415 7.307692 GCTTCTTTTTCTCTACCTTTGAGTGAG 60.308 40.741 0.00 0.00 33.59 3.51
2627 3416 7.125792 TCTTTTTCTCTACCTTTGAGTGAGT 57.874 36.000 0.00 0.00 33.59 3.41
2662 3451 8.154420 TGTAAGTAGTAGCCCCTTTCTTAAAT 57.846 34.615 0.00 0.00 0.00 1.40
2672 3462 5.335976 GCCCCTTTCTTAAATCACTTCAGTG 60.336 44.000 0.02 0.02 46.91 3.66
2833 3624 6.227522 TCATTGATACCGACTTCTGAAAACA 58.772 36.000 0.00 0.00 0.00 2.83
3027 3842 7.065803 TGTCTTAGCTTATGCATTACCTCAAAC 59.934 37.037 3.54 0.00 42.74 2.93
3429 4245 2.224744 TGAAGCTGCACAATAACCCAGA 60.225 45.455 1.02 0.00 0.00 3.86
3545 4521 7.806690 TGAATTTGCAAGAGTCATTACTGTAC 58.193 34.615 0.00 0.00 35.56 2.90
3558 4534 2.125310 TGTACCGAGGCAATGGCG 60.125 61.111 0.00 0.00 42.47 5.69
3591 4567 8.974292 AGCTCTTATTTCCCTTATGGTAGATA 57.026 34.615 0.00 0.00 34.77 1.98
3782 4767 5.543507 AAGCAGACCCATCTAAGATAGTG 57.456 43.478 0.00 0.00 32.25 2.74
3931 4917 3.686128 TGTTTGACAAACGAAACGATGG 58.314 40.909 22.59 0.00 44.28 3.51
4022 5008 4.283337 TGGCTTGTTGATGATCATTCCAT 58.717 39.130 10.14 0.00 0.00 3.41
4032 5018 5.634859 TGATGATCATTCCATATGTTCGTCG 59.365 40.000 10.14 0.00 36.93 5.12
4036 5022 1.552226 TTCCATATGTTCGTCGCGAC 58.448 50.000 28.96 28.96 34.89 5.19
4037 5023 0.452585 TCCATATGTTCGTCGCGACA 59.547 50.000 35.71 21.40 34.89 4.35
4076 5064 6.974622 GGATTGGCAATACTACATTTCTGTTG 59.025 38.462 15.33 0.00 36.79 3.33
4079 5067 7.087409 TGGCAATACTACATTTCTGTTGATG 57.913 36.000 0.00 0.00 36.79 3.07
4188 5188 3.385384 CCAGGCAGGCAGAGACGA 61.385 66.667 0.00 0.00 0.00 4.20
4189 5189 2.659016 CAGGCAGGCAGAGACGAA 59.341 61.111 0.00 0.00 0.00 3.85
4190 5190 1.220206 CAGGCAGGCAGAGACGAAT 59.780 57.895 0.00 0.00 0.00 3.34
4191 5191 1.088340 CAGGCAGGCAGAGACGAATG 61.088 60.000 0.00 0.00 0.00 2.67
4192 5192 1.219124 GGCAGGCAGAGACGAATGA 59.781 57.895 0.00 0.00 0.00 2.57
4193 5193 0.391661 GGCAGGCAGAGACGAATGAA 60.392 55.000 0.00 0.00 0.00 2.57
4388 5388 2.105930 GAGAAGATGAGCGCGGCT 59.894 61.111 8.83 5.31 43.88 5.52
4469 5469 0.757512 AGAGCATGAGGATGACGCAT 59.242 50.000 0.00 0.00 32.95 4.73
4751 5757 1.089112 TCAGCAACGCATGGAGAATG 58.911 50.000 0.00 0.00 39.49 2.67
4754 5760 2.009774 AGCAACGCATGGAGAATGTAC 58.990 47.619 0.00 0.00 38.65 2.90
4755 5761 1.064060 GCAACGCATGGAGAATGTACC 59.936 52.381 0.00 0.00 38.65 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.399858 AGTGTACTTCAACGTGCTATACAG 58.600 41.667 0.00 0.00 0.00 2.74
9 10 5.381174 AGTGTACTTCAACGTGCTATACA 57.619 39.130 0.00 0.00 0.00 2.29
22 23 5.729974 AACAACTTTCCGAAGTGTACTTC 57.270 39.130 13.43 13.43 45.18 3.01
23 24 7.550196 TCTTTAACAACTTTCCGAAGTGTACTT 59.450 33.333 0.00 0.00 45.18 2.24
24 25 7.043565 TCTTTAACAACTTTCCGAAGTGTACT 58.956 34.615 0.00 0.00 45.18 2.73
25 26 7.010830 ACTCTTTAACAACTTTCCGAAGTGTAC 59.989 37.037 0.00 0.00 45.18 2.90
26 27 7.043565 ACTCTTTAACAACTTTCCGAAGTGTA 58.956 34.615 0.00 0.00 45.18 2.90
27 28 5.878669 ACTCTTTAACAACTTTCCGAAGTGT 59.121 36.000 0.00 0.00 45.18 3.55
28 29 6.258068 AGACTCTTTAACAACTTTCCGAAGTG 59.742 38.462 0.00 0.00 45.18 3.16
30 31 6.846325 AGACTCTTTAACAACTTTCCGAAG 57.154 37.500 0.00 0.00 38.87 3.79
31 32 6.457799 GCAAGACTCTTTAACAACTTTCCGAA 60.458 38.462 0.00 0.00 0.00 4.30
32 33 5.007332 GCAAGACTCTTTAACAACTTTCCGA 59.993 40.000 0.00 0.00 0.00 4.55
33 34 5.205565 GCAAGACTCTTTAACAACTTTCCG 58.794 41.667 0.00 0.00 0.00 4.30
34 35 5.007332 TCGCAAGACTCTTTAACAACTTTCC 59.993 40.000 0.00 0.00 45.01 3.13
35 36 6.044512 TCGCAAGACTCTTTAACAACTTTC 57.955 37.500 0.00 0.00 45.01 2.62
52 53 3.041940 AACCCGCTCGTTCGCAAG 61.042 61.111 0.00 0.00 0.00 4.01
53 54 3.342627 CAACCCGCTCGTTCGCAA 61.343 61.111 0.00 0.00 0.00 4.85
57 58 2.746277 ATGCCAACCCGCTCGTTC 60.746 61.111 0.00 0.00 0.00 3.95
58 59 3.055719 CATGCCAACCCGCTCGTT 61.056 61.111 0.00 0.00 0.00 3.85
65 66 3.384532 CACCTGCCATGCCAACCC 61.385 66.667 0.00 0.00 0.00 4.11
66 67 4.073200 GCACCTGCCATGCCAACC 62.073 66.667 0.00 0.00 37.08 3.77
67 68 2.993264 AGCACCTGCCATGCCAAC 60.993 61.111 0.70 0.00 44.53 3.77
68 69 2.992689 CAGCACCTGCCATGCCAA 60.993 61.111 0.70 0.00 44.53 4.52
71 72 2.993264 AACCAGCACCTGCCATGC 60.993 61.111 0.00 0.00 43.38 4.06
72 73 2.693762 CGAACCAGCACCTGCCATG 61.694 63.158 0.00 0.00 43.38 3.66
73 74 2.360350 CGAACCAGCACCTGCCAT 60.360 61.111 0.00 0.00 43.38 4.40
74 75 3.555324 TCGAACCAGCACCTGCCA 61.555 61.111 0.00 0.00 43.38 4.92
75 76 3.050275 GTCGAACCAGCACCTGCC 61.050 66.667 0.00 0.00 43.38 4.85
76 77 1.598130 AAGTCGAACCAGCACCTGC 60.598 57.895 0.00 0.00 42.49 4.85
77 78 1.845809 GCAAGTCGAACCAGCACCTG 61.846 60.000 0.00 0.00 0.00 4.00
78 79 1.598130 GCAAGTCGAACCAGCACCT 60.598 57.895 0.00 0.00 0.00 4.00
79 80 1.166531 AAGCAAGTCGAACCAGCACC 61.167 55.000 0.00 0.00 0.00 5.01
80 81 0.040958 CAAGCAAGTCGAACCAGCAC 60.041 55.000 0.00 0.00 0.00 4.40
81 82 0.463654 ACAAGCAAGTCGAACCAGCA 60.464 50.000 0.00 0.00 0.00 4.41
82 83 0.040958 CACAAGCAAGTCGAACCAGC 60.041 55.000 0.00 0.00 0.00 4.85
83 84 0.588252 CCACAAGCAAGTCGAACCAG 59.412 55.000 0.00 0.00 0.00 4.00
84 85 0.107410 ACCACAAGCAAGTCGAACCA 60.107 50.000 0.00 0.00 0.00 3.67
85 86 0.586802 GACCACAAGCAAGTCGAACC 59.413 55.000 0.00 0.00 0.00 3.62
90 91 1.160329 AGCACGACCACAAGCAAGTC 61.160 55.000 0.00 0.00 0.00 3.01
91 92 1.153168 AGCACGACCACAAGCAAGT 60.153 52.632 0.00 0.00 0.00 3.16
92 93 1.159713 TCAGCACGACCACAAGCAAG 61.160 55.000 0.00 0.00 0.00 4.01
93 94 0.746204 TTCAGCACGACCACAAGCAA 60.746 50.000 0.00 0.00 0.00 3.91
94 95 1.153269 TTCAGCACGACCACAAGCA 60.153 52.632 0.00 0.00 0.00 3.91
95 96 1.160329 AGTTCAGCACGACCACAAGC 61.160 55.000 0.00 0.00 0.00 4.01
96 97 0.583438 CAGTTCAGCACGACCACAAG 59.417 55.000 0.00 0.00 0.00 3.16
97 98 0.176910 TCAGTTCAGCACGACCACAA 59.823 50.000 0.00 0.00 0.00 3.33
98 99 0.392706 ATCAGTTCAGCACGACCACA 59.607 50.000 0.00 0.00 0.00 4.17
99 100 0.792640 CATCAGTTCAGCACGACCAC 59.207 55.000 0.00 0.00 0.00 4.16
100 101 0.320683 CCATCAGTTCAGCACGACCA 60.321 55.000 0.00 0.00 0.00 4.02
101 102 0.320771 ACCATCAGTTCAGCACGACC 60.321 55.000 0.00 0.00 0.00 4.79
102 103 0.792640 CACCATCAGTTCAGCACGAC 59.207 55.000 0.00 0.00 0.00 4.34
103 104 0.950555 GCACCATCAGTTCAGCACGA 60.951 55.000 0.00 0.00 0.00 4.35
104 105 1.229975 TGCACCATCAGTTCAGCACG 61.230 55.000 0.00 0.00 0.00 5.34
105 106 0.520404 CTGCACCATCAGTTCAGCAC 59.480 55.000 0.00 0.00 32.89 4.40
106 107 2.936928 CTGCACCATCAGTTCAGCA 58.063 52.632 0.00 0.00 32.89 4.41
108 109 2.277969 CTAGCTGCACCATCAGTTCAG 58.722 52.381 1.02 0.00 42.06 3.02
109 110 1.625315 ACTAGCTGCACCATCAGTTCA 59.375 47.619 1.02 0.00 36.49 3.18
110 111 2.005451 CACTAGCTGCACCATCAGTTC 58.995 52.381 1.02 0.00 36.49 3.01
111 112 1.349026 ACACTAGCTGCACCATCAGTT 59.651 47.619 1.02 0.00 36.49 3.16
112 113 0.979665 ACACTAGCTGCACCATCAGT 59.020 50.000 1.02 0.00 36.49 3.41
113 114 2.482664 CCTACACTAGCTGCACCATCAG 60.483 54.545 1.02 0.00 37.15 2.90
114 115 1.482182 CCTACACTAGCTGCACCATCA 59.518 52.381 1.02 0.00 0.00 3.07
115 116 1.808133 GCCTACACTAGCTGCACCATC 60.808 57.143 1.02 0.00 0.00 3.51
116 117 0.179000 GCCTACACTAGCTGCACCAT 59.821 55.000 1.02 0.00 0.00 3.55
117 118 1.191489 TGCCTACACTAGCTGCACCA 61.191 55.000 1.02 0.00 0.00 4.17
118 119 0.460987 CTGCCTACACTAGCTGCACC 60.461 60.000 1.02 0.00 0.00 5.01
119 120 0.247736 ACTGCCTACACTAGCTGCAC 59.752 55.000 1.02 0.00 0.00 4.57
120 121 0.247460 CACTGCCTACACTAGCTGCA 59.753 55.000 1.02 0.00 0.00 4.41
121 122 0.532573 TCACTGCCTACACTAGCTGC 59.467 55.000 0.00 0.00 0.00 5.25
122 123 3.885901 TCTATCACTGCCTACACTAGCTG 59.114 47.826 0.00 0.00 0.00 4.24
123 124 4.171878 TCTATCACTGCCTACACTAGCT 57.828 45.455 0.00 0.00 0.00 3.32
124 125 5.461032 AATCTATCACTGCCTACACTAGC 57.539 43.478 0.00 0.00 0.00 3.42
125 126 5.772672 AGGAATCTATCACTGCCTACACTAG 59.227 44.000 0.00 0.00 0.00 2.57
126 127 5.706447 AGGAATCTATCACTGCCTACACTA 58.294 41.667 0.00 0.00 0.00 2.74
127 128 4.551671 AGGAATCTATCACTGCCTACACT 58.448 43.478 0.00 0.00 0.00 3.55
128 129 4.262249 GGAGGAATCTATCACTGCCTACAC 60.262 50.000 0.00 0.00 0.00 2.90
129 130 3.898123 GGAGGAATCTATCACTGCCTACA 59.102 47.826 0.00 0.00 0.00 2.74
130 131 4.156477 AGGAGGAATCTATCACTGCCTAC 58.844 47.826 0.00 0.00 0.00 3.18
131 132 4.477536 AGGAGGAATCTATCACTGCCTA 57.522 45.455 0.00 0.00 0.00 3.93
132 133 3.342926 AGGAGGAATCTATCACTGCCT 57.657 47.619 0.00 0.00 0.00 4.75
133 134 3.645687 AGAAGGAGGAATCTATCACTGCC 59.354 47.826 0.00 0.00 0.00 4.85
134 135 4.588528 AGAGAAGGAGGAATCTATCACTGC 59.411 45.833 0.00 0.00 0.00 4.40
135 136 5.832595 TCAGAGAAGGAGGAATCTATCACTG 59.167 44.000 0.00 0.00 0.00 3.66
136 137 5.833131 GTCAGAGAAGGAGGAATCTATCACT 59.167 44.000 0.00 0.00 0.00 3.41
137 138 5.278266 CGTCAGAGAAGGAGGAATCTATCAC 60.278 48.000 0.00 0.00 0.00 3.06
138 139 4.824537 CGTCAGAGAAGGAGGAATCTATCA 59.175 45.833 0.00 0.00 0.00 2.15
139 140 4.825085 ACGTCAGAGAAGGAGGAATCTATC 59.175 45.833 0.00 0.00 0.00 2.08
140 141 4.798882 ACGTCAGAGAAGGAGGAATCTAT 58.201 43.478 0.00 0.00 0.00 1.98
141 142 4.237976 ACGTCAGAGAAGGAGGAATCTA 57.762 45.455 0.00 0.00 0.00 1.98
142 143 3.094484 ACGTCAGAGAAGGAGGAATCT 57.906 47.619 0.00 0.00 0.00 2.40
143 144 3.056465 ACAACGTCAGAGAAGGAGGAATC 60.056 47.826 0.00 0.00 0.00 2.52
144 145 2.900546 ACAACGTCAGAGAAGGAGGAAT 59.099 45.455 0.00 0.00 0.00 3.01
145 146 2.035961 CACAACGTCAGAGAAGGAGGAA 59.964 50.000 0.00 0.00 0.00 3.36
146 147 1.613925 CACAACGTCAGAGAAGGAGGA 59.386 52.381 0.00 0.00 0.00 3.71
147 148 1.341531 ACACAACGTCAGAGAAGGAGG 59.658 52.381 0.00 0.00 0.00 4.30
148 149 2.802787 ACACAACGTCAGAGAAGGAG 57.197 50.000 0.00 0.00 0.00 3.69
149 150 3.118920 TGAAACACAACGTCAGAGAAGGA 60.119 43.478 0.00 0.00 0.00 3.36
150 151 3.194861 TGAAACACAACGTCAGAGAAGG 58.805 45.455 0.00 0.00 0.00 3.46
151 152 4.857871 TTGAAACACAACGTCAGAGAAG 57.142 40.909 0.00 0.00 33.18 2.85
162 163 1.716826 GCCGTCGGGTTGAAACACAA 61.717 55.000 14.38 0.00 36.02 3.33
163 164 2.181521 GCCGTCGGGTTGAAACACA 61.182 57.895 14.38 0.00 34.97 3.72
164 165 1.890510 AGCCGTCGGGTTGAAACAC 60.891 57.895 10.91 0.00 34.97 3.32
165 166 1.890041 CAGCCGTCGGGTTGAAACA 60.890 57.895 14.57 0.00 46.64 2.83
166 167 2.613506 CCAGCCGTCGGGTTGAAAC 61.614 63.158 14.57 0.00 46.64 2.78
167 168 2.281208 CCAGCCGTCGGGTTGAAA 60.281 61.111 14.57 0.00 46.64 2.69
168 169 3.234630 CTCCAGCCGTCGGGTTGAA 62.235 63.158 14.57 1.02 46.64 2.69
169 170 3.691342 CTCCAGCCGTCGGGTTGA 61.691 66.667 14.57 15.17 46.64 3.18
170 171 3.934391 GACTCCAGCCGTCGGGTTG 62.934 68.421 14.57 11.07 43.61 3.77
171 172 3.692406 GACTCCAGCCGTCGGGTT 61.692 66.667 14.57 0.00 34.97 4.11
176 177 2.105128 CCATCGACTCCAGCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
177 178 4.148825 GCCATCGACTCCAGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
178 179 3.451556 ATGCCATCGACTCCAGCCG 62.452 63.158 0.00 0.00 0.00 5.52
179 180 1.596477 GATGCCATCGACTCCAGCC 60.596 63.158 0.00 0.00 0.00 4.85
180 181 0.879400 CAGATGCCATCGACTCCAGC 60.879 60.000 0.00 0.00 0.00 4.85
181 182 0.249784 CCAGATGCCATCGACTCCAG 60.250 60.000 0.00 0.00 0.00 3.86
182 183 1.825341 CCAGATGCCATCGACTCCA 59.175 57.895 0.00 0.00 0.00 3.86
183 184 1.596477 GCCAGATGCCATCGACTCC 60.596 63.158 0.00 0.00 0.00 3.85
184 185 0.879400 CAGCCAGATGCCATCGACTC 60.879 60.000 0.00 0.00 42.71 3.36
185 186 1.145598 CAGCCAGATGCCATCGACT 59.854 57.895 0.00 0.00 42.71 4.18
186 187 0.745845 AACAGCCAGATGCCATCGAC 60.746 55.000 0.00 0.00 42.71 4.20
187 188 0.035152 AAACAGCCAGATGCCATCGA 60.035 50.000 0.00 0.00 42.71 3.59
188 189 0.379669 GAAACAGCCAGATGCCATCG 59.620 55.000 0.00 0.00 42.71 3.84
189 190 1.404391 CAGAAACAGCCAGATGCCATC 59.596 52.381 0.00 0.00 42.71 3.51
190 191 1.272313 ACAGAAACAGCCAGATGCCAT 60.272 47.619 0.00 0.00 42.71 4.40
191 192 0.111061 ACAGAAACAGCCAGATGCCA 59.889 50.000 0.00 0.00 42.71 4.92
192 193 1.251251 AACAGAAACAGCCAGATGCC 58.749 50.000 0.00 0.00 42.71 4.40
193 194 2.669364 CAAACAGAAACAGCCAGATGC 58.331 47.619 0.00 0.00 41.71 3.91
194 195 2.295349 AGCAAACAGAAACAGCCAGATG 59.705 45.455 0.00 0.00 0.00 2.90
195 196 2.590821 AGCAAACAGAAACAGCCAGAT 58.409 42.857 0.00 0.00 0.00 2.90
196 197 2.057137 AGCAAACAGAAACAGCCAGA 57.943 45.000 0.00 0.00 0.00 3.86
197 198 2.349817 CGTAGCAAACAGAAACAGCCAG 60.350 50.000 0.00 0.00 0.00 4.85
198 199 1.601903 CGTAGCAAACAGAAACAGCCA 59.398 47.619 0.00 0.00 0.00 4.75
199 200 1.871039 TCGTAGCAAACAGAAACAGCC 59.129 47.619 0.00 0.00 0.00 4.85
200 201 3.242608 TGTTCGTAGCAAACAGAAACAGC 60.243 43.478 0.00 0.00 32.98 4.40
201 202 4.530094 TGTTCGTAGCAAACAGAAACAG 57.470 40.909 0.00 0.00 32.98 3.16
202 203 4.948608 TTGTTCGTAGCAAACAGAAACA 57.051 36.364 0.00 0.00 37.86 2.83
203 204 6.806120 ATTTTGTTCGTAGCAAACAGAAAC 57.194 33.333 0.00 0.00 37.86 2.78
204 205 7.164498 CGTAATTTTGTTCGTAGCAAACAGAAA 59.836 33.333 0.00 0.00 37.86 2.52
205 206 6.629649 CGTAATTTTGTTCGTAGCAAACAGAA 59.370 34.615 0.00 0.00 37.86 3.02
206 207 6.018913 TCGTAATTTTGTTCGTAGCAAACAGA 60.019 34.615 0.00 0.00 37.86 3.41
207 208 6.084551 GTCGTAATTTTGTTCGTAGCAAACAG 59.915 38.462 0.00 0.00 37.86 3.16
208 209 5.902981 GTCGTAATTTTGTTCGTAGCAAACA 59.097 36.000 0.00 0.00 35.82 2.83
209 210 5.337773 GGTCGTAATTTTGTTCGTAGCAAAC 59.662 40.000 0.00 0.00 35.82 2.93
210 211 5.007430 TGGTCGTAATTTTGTTCGTAGCAAA 59.993 36.000 0.00 0.00 34.47 3.68
211 212 4.510711 TGGTCGTAATTTTGTTCGTAGCAA 59.489 37.500 0.00 0.00 0.00 3.91
212 213 4.056740 TGGTCGTAATTTTGTTCGTAGCA 58.943 39.130 0.00 0.00 0.00 3.49
213 214 4.634991 CTGGTCGTAATTTTGTTCGTAGC 58.365 43.478 0.00 0.00 0.00 3.58
214 215 4.150980 TGCTGGTCGTAATTTTGTTCGTAG 59.849 41.667 0.00 0.00 0.00 3.51
215 216 4.056740 TGCTGGTCGTAATTTTGTTCGTA 58.943 39.130 0.00 0.00 0.00 3.43
216 217 2.873472 TGCTGGTCGTAATTTTGTTCGT 59.127 40.909 0.00 0.00 0.00 3.85
217 218 3.185594 TCTGCTGGTCGTAATTTTGTTCG 59.814 43.478 0.00 0.00 0.00 3.95
218 219 4.378459 CCTCTGCTGGTCGTAATTTTGTTC 60.378 45.833 0.00 0.00 0.00 3.18
219 220 3.502211 CCTCTGCTGGTCGTAATTTTGTT 59.498 43.478 0.00 0.00 0.00 2.83
220 221 3.074412 CCTCTGCTGGTCGTAATTTTGT 58.926 45.455 0.00 0.00 0.00 2.83
221 222 2.159517 GCCTCTGCTGGTCGTAATTTTG 60.160 50.000 0.00 0.00 33.53 2.44
222 223 2.084546 GCCTCTGCTGGTCGTAATTTT 58.915 47.619 0.00 0.00 33.53 1.82
223 224 1.003118 TGCCTCTGCTGGTCGTAATTT 59.997 47.619 0.00 0.00 38.71 1.82
224 225 0.613260 TGCCTCTGCTGGTCGTAATT 59.387 50.000 0.00 0.00 38.71 1.40
225 226 0.613260 TTGCCTCTGCTGGTCGTAAT 59.387 50.000 0.00 0.00 38.71 1.89
226 227 0.613260 ATTGCCTCTGCTGGTCGTAA 59.387 50.000 0.00 0.00 38.71 3.18
227 228 1.136305 GTATTGCCTCTGCTGGTCGTA 59.864 52.381 0.00 0.00 38.71 3.43
228 229 0.108138 GTATTGCCTCTGCTGGTCGT 60.108 55.000 0.00 0.00 38.71 4.34
229 230 0.176680 AGTATTGCCTCTGCTGGTCG 59.823 55.000 0.00 0.00 38.71 4.79
230 231 3.543680 TTAGTATTGCCTCTGCTGGTC 57.456 47.619 0.00 0.00 38.71 4.02
231 232 3.455910 TCATTAGTATTGCCTCTGCTGGT 59.544 43.478 0.00 0.00 38.71 4.00
232 233 4.063689 CTCATTAGTATTGCCTCTGCTGG 58.936 47.826 0.00 0.00 38.71 4.85
233 234 3.497640 GCTCATTAGTATTGCCTCTGCTG 59.502 47.826 0.00 0.00 38.71 4.41
234 235 3.495806 GGCTCATTAGTATTGCCTCTGCT 60.496 47.826 0.00 0.00 40.36 4.24
235 236 2.810852 GGCTCATTAGTATTGCCTCTGC 59.189 50.000 0.00 0.00 40.36 4.26
236 237 3.062763 CGGCTCATTAGTATTGCCTCTG 58.937 50.000 0.00 0.00 41.25 3.35
237 238 2.548920 GCGGCTCATTAGTATTGCCTCT 60.549 50.000 0.00 0.00 41.25 3.69
238 239 1.801178 GCGGCTCATTAGTATTGCCTC 59.199 52.381 0.00 0.00 41.25 4.70
239 240 1.417890 AGCGGCTCATTAGTATTGCCT 59.582 47.619 0.00 0.00 41.25 4.75
240 241 1.884235 AGCGGCTCATTAGTATTGCC 58.116 50.000 0.00 0.00 40.14 4.52
241 242 2.872245 TCAAGCGGCTCATTAGTATTGC 59.128 45.455 1.45 0.00 0.00 3.56
242 243 5.446709 CATTCAAGCGGCTCATTAGTATTG 58.553 41.667 1.45 0.00 0.00 1.90
243 244 4.023707 GCATTCAAGCGGCTCATTAGTATT 60.024 41.667 1.45 0.00 0.00 1.89
244 245 3.499918 GCATTCAAGCGGCTCATTAGTAT 59.500 43.478 1.45 0.00 0.00 2.12
245 246 2.872245 GCATTCAAGCGGCTCATTAGTA 59.128 45.455 1.45 0.00 0.00 1.82
246 247 1.672881 GCATTCAAGCGGCTCATTAGT 59.327 47.619 1.45 0.00 0.00 2.24
247 248 2.396160 GCATTCAAGCGGCTCATTAG 57.604 50.000 1.45 0.00 0.00 1.73
257 258 2.146073 AACAGGTGGCGCATTCAAGC 62.146 55.000 10.83 0.00 0.00 4.01
258 259 0.109597 GAACAGGTGGCGCATTCAAG 60.110 55.000 10.83 0.00 0.00 3.02
259 260 0.537143 AGAACAGGTGGCGCATTCAA 60.537 50.000 10.83 0.00 0.00 2.69
260 261 0.955428 GAGAACAGGTGGCGCATTCA 60.955 55.000 10.83 0.00 0.00 2.57
261 262 1.796796 GAGAACAGGTGGCGCATTC 59.203 57.895 10.83 2.70 0.00 2.67
290 291 2.698797 ACCTCGAGAAAGAACTGTTCCA 59.301 45.455 15.71 0.00 0.00 3.53
292 293 2.476997 GCACCTCGAGAAAGAACTGTTC 59.523 50.000 15.71 12.54 0.00 3.18
294 295 1.689273 AGCACCTCGAGAAAGAACTGT 59.311 47.619 15.71 0.00 0.00 3.55
295 296 2.064762 CAGCACCTCGAGAAAGAACTG 58.935 52.381 15.71 8.53 0.00 3.16
296 297 1.606737 GCAGCACCTCGAGAAAGAACT 60.607 52.381 15.71 0.00 0.00 3.01
297 298 0.793250 GCAGCACCTCGAGAAAGAAC 59.207 55.000 15.71 0.00 0.00 3.01
300 301 2.097038 CCGCAGCACCTCGAGAAAG 61.097 63.158 15.71 4.10 0.00 2.62
301 302 2.048222 CCGCAGCACCTCGAGAAA 60.048 61.111 15.71 0.00 0.00 2.52
302 303 3.303135 ACCGCAGCACCTCGAGAA 61.303 61.111 15.71 0.00 0.00 2.87
303 304 4.056125 CACCGCAGCACCTCGAGA 62.056 66.667 15.71 0.00 0.00 4.04
307 308 4.767255 CCTCCACCGCAGCACCTC 62.767 72.222 0.00 0.00 0.00 3.85
310 311 2.650813 CTATCCCTCCACCGCAGCAC 62.651 65.000 0.00 0.00 0.00 4.40
312 313 2.370647 GACTATCCCTCCACCGCAGC 62.371 65.000 0.00 0.00 0.00 5.25
315 316 0.755698 TCAGACTATCCCTCCACCGC 60.756 60.000 0.00 0.00 0.00 5.68
318 319 2.467880 TGGTTCAGACTATCCCTCCAC 58.532 52.381 0.00 0.00 0.00 4.02
319 320 2.940514 TGGTTCAGACTATCCCTCCA 57.059 50.000 0.00 0.00 0.00 3.86
320 321 3.181450 CCAATGGTTCAGACTATCCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
327 698 5.187186 GGAGTAAGTCCAATGGTTCAGACTA 59.813 44.000 0.00 0.00 46.10 2.59
338 709 6.747070 TCAGTGCTGAAGGAGTAAGTCCAAT 61.747 44.000 0.00 0.00 40.45 3.16
339 710 5.481753 TCAGTGCTGAAGGAGTAAGTCCAA 61.482 45.833 0.00 0.00 40.45 3.53
340 711 4.007934 TCAGTGCTGAAGGAGTAAGTCCA 61.008 47.826 0.00 0.00 40.45 4.02
341 712 2.563179 TCAGTGCTGAAGGAGTAAGTCC 59.437 50.000 0.00 0.00 39.16 3.85
342 713 3.257127 AGTCAGTGCTGAAGGAGTAAGTC 59.743 47.826 3.19 0.00 41.85 3.01
343 714 3.235200 AGTCAGTGCTGAAGGAGTAAGT 58.765 45.455 3.19 0.00 41.85 2.24
344 715 3.951775 AGTCAGTGCTGAAGGAGTAAG 57.048 47.619 3.19 0.00 41.85 2.34
346 717 5.949952 TGTAATAGTCAGTGCTGAAGGAGTA 59.050 40.000 3.19 0.00 41.85 2.59
347 718 4.772624 TGTAATAGTCAGTGCTGAAGGAGT 59.227 41.667 3.19 0.00 41.85 3.85
349 720 5.738619 TTGTAATAGTCAGTGCTGAAGGA 57.261 39.130 3.19 0.00 41.85 3.36
350 721 5.163814 GCTTTGTAATAGTCAGTGCTGAAGG 60.164 44.000 3.19 0.00 41.85 3.46
351 722 5.641209 AGCTTTGTAATAGTCAGTGCTGAAG 59.359 40.000 3.19 0.00 41.85 3.02
352 723 5.409520 CAGCTTTGTAATAGTCAGTGCTGAA 59.590 40.000 3.19 0.00 41.85 3.02
353 724 4.931601 CAGCTTTGTAATAGTCAGTGCTGA 59.068 41.667 0.00 0.00 41.03 4.26
354 725 4.436584 GCAGCTTTGTAATAGTCAGTGCTG 60.437 45.833 0.00 0.00 41.23 4.41
355 726 3.686726 GCAGCTTTGTAATAGTCAGTGCT 59.313 43.478 0.00 0.00 0.00 4.40
356 727 3.436704 TGCAGCTTTGTAATAGTCAGTGC 59.563 43.478 0.00 0.00 0.00 4.40
357 728 4.093998 CCTGCAGCTTTGTAATAGTCAGTG 59.906 45.833 8.66 0.00 0.00 3.66
358 729 4.020218 TCCTGCAGCTTTGTAATAGTCAGT 60.020 41.667 8.66 0.00 0.00 3.41
359 730 4.507710 TCCTGCAGCTTTGTAATAGTCAG 58.492 43.478 8.66 0.00 0.00 3.51
360 731 4.507710 CTCCTGCAGCTTTGTAATAGTCA 58.492 43.478 8.66 0.00 0.00 3.41
361 732 3.311048 GCTCCTGCAGCTTTGTAATAGTC 59.689 47.826 8.66 0.00 45.83 2.59
362 733 3.274288 GCTCCTGCAGCTTTGTAATAGT 58.726 45.455 8.66 0.00 45.83 2.12
363 734 3.959573 GCTCCTGCAGCTTTGTAATAG 57.040 47.619 8.66 0.00 45.83 1.73
377 748 0.323178 AATCTTGGGCTGTGCTCCTG 60.323 55.000 0.00 0.00 0.00 3.86
385 756 4.156739 GTCTAAAACCTGAATCTTGGGCTG 59.843 45.833 0.00 0.00 0.00 4.85
389 760 5.316987 ACCTGTCTAAAACCTGAATCTTGG 58.683 41.667 0.00 0.00 0.00 3.61
390 761 5.412904 GGACCTGTCTAAAACCTGAATCTTG 59.587 44.000 0.00 0.00 0.00 3.02
391 762 5.073144 TGGACCTGTCTAAAACCTGAATCTT 59.927 40.000 0.00 0.00 0.00 2.40
393 764 4.906618 TGGACCTGTCTAAAACCTGAATC 58.093 43.478 0.00 0.00 0.00 2.52
398 769 3.858135 TCTCTGGACCTGTCTAAAACCT 58.142 45.455 0.00 0.00 0.00 3.50
400 771 5.470047 TCTTCTCTGGACCTGTCTAAAAC 57.530 43.478 0.00 0.00 0.00 2.43
411 782 0.456995 CGGACGCTTCTTCTCTGGAC 60.457 60.000 0.00 0.00 0.00 4.02
424 795 2.096481 TTGTTTGAACGAGCGGACGC 62.096 55.000 8.91 8.91 42.33 5.19
425 796 0.302288 TTTGTTTGAACGAGCGGACG 59.698 50.000 0.00 0.00 39.31 4.79
426 797 2.681152 ATTTGTTTGAACGAGCGGAC 57.319 45.000 0.00 0.00 0.00 4.79
427 798 3.701532 AAATTTGTTTGAACGAGCGGA 57.298 38.095 0.00 0.00 0.00 5.54
429 800 3.794028 TCCAAAATTTGTTTGAACGAGCG 59.206 39.130 4.92 0.00 0.00 5.03
430 801 5.905480 ATCCAAAATTTGTTTGAACGAGC 57.095 34.783 4.92 0.00 0.00 5.03
431 802 7.904094 TCAAATCCAAAATTTGTTTGAACGAG 58.096 30.769 16.84 0.00 39.36 4.18
432 803 7.834068 TCAAATCCAAAATTTGTTTGAACGA 57.166 28.000 16.84 2.65 39.36 3.85
433 804 9.500864 AAATCAAATCCAAAATTTGTTTGAACG 57.499 25.926 20.59 0.63 38.38 3.95
514 888 4.603535 GTGGCTTGCCACTGGGGT 62.604 66.667 30.77 0.00 39.65 4.95
786 1164 0.729478 CGGCTAGCACATATCGTCGG 60.729 60.000 18.24 0.00 0.00 4.79
817 1195 3.508840 CATCGGGCTGGCGGAAAC 61.509 66.667 15.05 0.00 0.00 2.78
892 1270 0.793617 TCCTCTCCCACTTTCCCTCT 59.206 55.000 0.00 0.00 0.00 3.69
938 1334 3.534160 CGACTTGCGTTGCGTACT 58.466 55.556 0.00 0.00 34.64 2.73
966 1362 1.694955 GACCTCGACTCGTCTCGTCC 61.695 65.000 0.00 0.00 35.10 4.79
1268 1667 2.509336 GTGACAGGGGATCGCGTG 60.509 66.667 25.48 25.48 0.00 5.34
1280 1679 0.461548 GAGATGCTGGATCGGTGACA 59.538 55.000 3.41 0.00 36.04 3.58
1282 1681 1.037579 ACGAGATGCTGGATCGGTGA 61.038 55.000 3.41 0.00 40.67 4.02
1283 1682 0.179100 AACGAGATGCTGGATCGGTG 60.179 55.000 3.41 0.84 40.67 4.94
1284 1683 0.103208 GAACGAGATGCTGGATCGGT 59.897 55.000 3.41 3.62 39.49 4.69
1286 1685 0.029433 TCGAACGAGATGCTGGATCG 59.971 55.000 3.41 0.00 42.04 3.69
1287 1686 2.430546 ATCGAACGAGATGCTGGATC 57.569 50.000 0.29 0.29 0.00 3.36
1288 1687 2.898729 AATCGAACGAGATGCTGGAT 57.101 45.000 2.94 0.00 0.00 3.41
1289 1688 2.672961 AAATCGAACGAGATGCTGGA 57.327 45.000 2.94 0.00 0.00 3.86
1291 1690 2.843542 GCGAAAATCGAACGAGATGCTG 60.844 50.000 3.61 0.00 43.74 4.41
1292 1691 1.324736 GCGAAAATCGAACGAGATGCT 59.675 47.619 3.61 0.00 43.74 3.79
1293 1692 1.592350 GGCGAAAATCGAACGAGATGC 60.592 52.381 3.61 2.86 43.74 3.91
1294 1693 1.331161 CGGCGAAAATCGAACGAGATG 60.331 52.381 0.00 0.00 43.74 2.90
1295 1694 0.921347 CGGCGAAAATCGAACGAGAT 59.079 50.000 0.00 0.00 43.74 2.75
1296 1695 1.074319 CCGGCGAAAATCGAACGAGA 61.074 55.000 9.30 0.00 43.74 4.04
1297 1696 1.343821 CCGGCGAAAATCGAACGAG 59.656 57.895 9.30 5.60 43.74 4.18
1298 1697 2.095847 CCCGGCGAAAATCGAACGA 61.096 57.895 9.30 0.00 43.74 3.85
1342 1743 2.364128 CGTGACACGACGCTAATCTAG 58.636 52.381 23.39 0.00 46.05 2.43
1343 1744 1.063027 CCGTGACACGACGCTAATCTA 59.937 52.381 28.83 0.00 46.05 1.98
1344 1745 0.179171 CCGTGACACGACGCTAATCT 60.179 55.000 28.83 0.00 46.05 2.40
1370 1771 2.477189 GGTTAACACAGCACACACACAC 60.477 50.000 8.10 0.00 0.00 3.82
1371 1772 1.740585 GGTTAACACAGCACACACACA 59.259 47.619 8.10 0.00 0.00 3.72
1372 1773 1.064952 GGGTTAACACAGCACACACAC 59.935 52.381 8.10 0.00 0.00 3.82
1373 1774 1.065053 AGGGTTAACACAGCACACACA 60.065 47.619 11.16 0.00 0.00 3.72
1374 1775 1.675552 AGGGTTAACACAGCACACAC 58.324 50.000 11.16 0.00 0.00 3.82
1426 1827 2.715046 TGAAGACCACCAATCATCAGC 58.285 47.619 0.00 0.00 0.00 4.26
1442 1843 2.290323 CCTCCCTGTAACCCTGTTGAAG 60.290 54.545 0.00 0.00 0.00 3.02
1507 1908 3.409570 CTGCATGAAGGGGATGTAGATG 58.590 50.000 0.00 0.00 36.06 2.90
1603 2004 1.541147 GTTGCAGCAACCTAGCATTCA 59.459 47.619 25.53 0.00 38.30 2.57
1604 2005 1.541147 TGTTGCAGCAACCTAGCATTC 59.459 47.619 31.05 7.63 42.96 2.67
1613 2014 6.611381 TCTAAGTAATCAATGTTGCAGCAAC 58.389 36.000 28.44 28.44 43.78 4.17
1615 2016 6.172630 TCTCTAAGTAATCAATGTTGCAGCA 58.827 36.000 5.46 5.46 0.00 4.41
1616 2017 6.668541 TCTCTAAGTAATCAATGTTGCAGC 57.331 37.500 0.00 0.00 0.00 5.25
1618 2019 8.830580 GCTTATCTCTAAGTAATCAATGTTGCA 58.169 33.333 0.00 0.00 37.30 4.08
1619 2020 8.286097 GGCTTATCTCTAAGTAATCAATGTTGC 58.714 37.037 0.00 0.00 37.30 4.17
1620 2021 9.553064 AGGCTTATCTCTAAGTAATCAATGTTG 57.447 33.333 0.00 0.00 37.30 3.33
1621 2022 9.771534 GAGGCTTATCTCTAAGTAATCAATGTT 57.228 33.333 0.00 0.00 37.30 2.71
1639 2041 5.455899 CCCTGAGCTCATAAAAGAGGCTTAT 60.456 44.000 18.63 0.00 36.15 1.73
1652 2055 0.341258 TTCCTCCTCCCTGAGCTCAT 59.659 55.000 18.63 0.00 0.00 2.90
1668 2071 5.048713 CCTGGTTTGAACATAGACAAGTTCC 60.049 44.000 0.00 0.00 42.57 3.62
1669 2072 5.048713 CCCTGGTTTGAACATAGACAAGTTC 60.049 44.000 0.00 0.00 43.31 3.01
1670 2073 4.827284 CCCTGGTTTGAACATAGACAAGTT 59.173 41.667 0.00 0.00 0.00 2.66
1685 2088 2.039879 ACTAAATCGAGCACCCTGGTTT 59.960 45.455 0.00 0.00 0.00 3.27
1694 2097 1.992667 CGCAACAGACTAAATCGAGCA 59.007 47.619 0.00 0.00 0.00 4.26
1713 2116 6.037062 TGTGTTCAACCATCTATTAGCATTCG 59.963 38.462 0.00 0.00 0.00 3.34
1727 2130 7.155328 ACAAAAACATAACTTGTGTTCAACCA 58.845 30.769 4.55 0.00 38.76 3.67
1818 2221 4.573201 GTCCCTAAACACATAATTAGCGCA 59.427 41.667 11.47 0.00 0.00 6.09
2027 2430 8.709308 AGCACCATAAGTAACAATCTCTTCTAT 58.291 33.333 0.00 0.00 0.00 1.98
2043 2446 8.753133 TCTCTATAATGTCCATAGCACCATAAG 58.247 37.037 0.00 0.00 0.00 1.73
2049 2452 8.839310 AACAATCTCTATAATGTCCATAGCAC 57.161 34.615 0.00 0.00 0.00 4.40
2063 2466 8.840321 GCAAACACCATACATAACAATCTCTAT 58.160 33.333 0.00 0.00 0.00 1.98
2064 2467 7.826744 TGCAAACACCATACATAACAATCTCTA 59.173 33.333 0.00 0.00 0.00 2.43
2065 2468 6.658816 TGCAAACACCATACATAACAATCTCT 59.341 34.615 0.00 0.00 0.00 3.10
2066 2469 6.851609 TGCAAACACCATACATAACAATCTC 58.148 36.000 0.00 0.00 0.00 2.75
2067 2470 6.832520 TGCAAACACCATACATAACAATCT 57.167 33.333 0.00 0.00 0.00 2.40
2068 2471 9.579768 TTAATGCAAACACCATACATAACAATC 57.420 29.630 0.00 0.00 0.00 2.67
2069 2472 9.935241 TTTAATGCAAACACCATACATAACAAT 57.065 25.926 0.00 0.00 0.00 2.71
2070 2473 9.416794 CTTTAATGCAAACACCATACATAACAA 57.583 29.630 0.00 0.00 0.00 2.83
2071 2474 7.543868 GCTTTAATGCAAACACCATACATAACA 59.456 33.333 8.38 0.00 0.00 2.41
2072 2475 7.543868 TGCTTTAATGCAAACACCATACATAAC 59.456 33.333 13.19 0.00 40.29 1.89
2073 2476 7.606349 TGCTTTAATGCAAACACCATACATAA 58.394 30.769 13.19 0.00 40.29 1.90
2074 2477 7.163001 TGCTTTAATGCAAACACCATACATA 57.837 32.000 13.19 0.00 40.29 2.29
2075 2478 6.035368 TGCTTTAATGCAAACACCATACAT 57.965 33.333 13.19 0.00 40.29 2.29
2076 2479 5.459536 TGCTTTAATGCAAACACCATACA 57.540 34.783 13.19 0.00 40.29 2.29
2137 2689 0.763652 AGGCCACTAGATCATGCCAG 59.236 55.000 5.01 0.00 44.60 4.85
2235 2790 2.367202 TGCCCTAGCCCACTAGTGC 61.367 63.158 17.86 7.24 46.55 4.40
2266 2821 3.641434 ACTAGCATTTGCAGACCTGAT 57.359 42.857 5.20 0.00 45.16 2.90
2324 2933 3.202151 CCACATAGGTCCCACCAACTAAT 59.798 47.826 0.00 0.00 41.95 1.73
2351 2960 7.692040 ATGGAACACTAGACGATAGGTCAGATA 60.692 40.741 0.00 0.00 46.17 1.98
2385 2994 7.115378 GTGTTCTGATAAGCAACCATCTTTTTG 59.885 37.037 0.00 0.00 0.00 2.44
2405 3014 1.133513 TCCCATGTGCCAAAGTGTTCT 60.134 47.619 0.00 0.00 0.00 3.01
2485 3259 7.176340 AAGAACTCTTGAGCTTTTCAGCATTAT 59.824 33.333 0.00 0.00 40.81 1.28
2626 3415 9.102757 GGGGCTACTACTTACAAACTAAATAAC 57.897 37.037 0.00 0.00 0.00 1.89
2627 3416 9.050154 AGGGGCTACTACTTACAAACTAAATAA 57.950 33.333 0.00 0.00 0.00 1.40
2672 3462 3.550842 GCATCAACACACCCAAGAGAAAC 60.551 47.826 0.00 0.00 0.00 2.78
2833 3624 6.013725 GTCAGGAATAAGGGAAAACCCAAAAT 60.014 38.462 8.05 0.00 41.63 1.82
2978 3769 7.068702 ACATGGGCATCAAGGAAAAGAATATA 58.931 34.615 0.00 0.00 0.00 0.86
3545 4521 1.586154 AAACTTCGCCATTGCCTCGG 61.586 55.000 0.00 0.00 0.00 4.63
3782 4767 3.018149 TGTTTACACCCACTGAAACACC 58.982 45.455 0.00 0.00 36.99 4.16
3931 4917 6.319658 TGGATATGAATTTTCTCAGCAAGGAC 59.680 38.462 0.00 0.00 0.00 3.85
4076 5064 3.930336 TGAGTCACTGTGATTGGACATC 58.070 45.455 14.37 0.00 32.79 3.06
4079 5067 3.668447 ACATGAGTCACTGTGATTGGAC 58.332 45.455 14.37 0.97 0.00 4.02
4141 5129 7.310664 TGTATGTATGCTAAACTAGATACCGC 58.689 38.462 0.00 0.00 0.00 5.68
4182 5182 6.703607 ACCTAACATGATGATTCATTCGTCTC 59.296 38.462 0.00 0.00 40.70 3.36
4183 5183 6.586344 ACCTAACATGATGATTCATTCGTCT 58.414 36.000 0.00 0.00 40.70 4.18
4184 5184 6.851222 ACCTAACATGATGATTCATTCGTC 57.149 37.500 0.00 0.00 40.70 4.20
4185 5185 7.415541 CCAAACCTAACATGATGATTCATTCGT 60.416 37.037 0.00 0.00 40.70 3.85
4186 5186 6.914215 CCAAACCTAACATGATGATTCATTCG 59.086 38.462 0.00 0.00 40.70 3.34
4187 5187 6.698766 GCCAAACCTAACATGATGATTCATTC 59.301 38.462 0.00 0.00 40.70 2.67
4188 5188 6.381994 AGCCAAACCTAACATGATGATTCATT 59.618 34.615 0.00 0.00 40.70 2.57
4189 5189 5.895534 AGCCAAACCTAACATGATGATTCAT 59.104 36.000 0.00 0.00 43.51 2.57
4190 5190 5.125900 CAGCCAAACCTAACATGATGATTCA 59.874 40.000 0.00 0.00 36.00 2.57
4191 5191 5.450965 CCAGCCAAACCTAACATGATGATTC 60.451 44.000 0.00 0.00 0.00 2.52
4192 5192 4.403432 CCAGCCAAACCTAACATGATGATT 59.597 41.667 0.00 0.00 0.00 2.57
4193 5193 3.956199 CCAGCCAAACCTAACATGATGAT 59.044 43.478 0.00 0.00 0.00 2.45
4388 5388 1.359117 GCTCGTCTACGGCTGCATA 59.641 57.895 0.50 0.00 40.29 3.14
4469 5469 2.047274 CCCTTTCTCTTCGCCGCA 60.047 61.111 0.00 0.00 0.00 5.69
4481 5481 2.907179 CGAGTTCCTGGGGCCCTTT 61.907 63.158 25.93 2.24 0.00 3.11
4751 5757 3.531538 TCGCTTTCTCATTCATGGGTAC 58.468 45.455 0.00 0.00 0.00 3.34
4754 5760 2.223433 GCTTCGCTTTCTCATTCATGGG 60.223 50.000 0.00 0.00 0.00 4.00
4755 5761 2.421073 TGCTTCGCTTTCTCATTCATGG 59.579 45.455 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.