Multiple sequence alignment - TraesCS5D01G444500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G444500 chr5D 100.000 6293 0 0 1 6293 495464836 495471128 0.000000e+00 11622.0
1 TraesCS5D01G444500 chr5D 94.637 317 17 0 1 317 517672491 517672807 5.670000e-135 492.0
2 TraesCS5D01G444500 chr5D 83.965 343 28 14 561 893 495422929 495423254 2.850000e-78 303.0
3 TraesCS5D01G444500 chr5D 96.970 33 1 0 321 353 27268825 27268793 8.810000e-04 56.5
4 TraesCS5D01G444500 chr5B 93.598 3280 145 23 1607 4835 612022999 612026264 0.000000e+00 4833.0
5 TraesCS5D01G444500 chr5B 96.864 1467 24 2 4825 6269 612026287 612027753 0.000000e+00 2435.0
6 TraesCS5D01G444500 chr5B 85.960 1047 94 23 537 1537 612021931 612022970 0.000000e+00 1070.0
7 TraesCS5D01G444500 chr5B 81.053 95 5 9 5800 5883 612029197 612029289 5.270000e-06 63.9
8 TraesCS5D01G444500 chr5A 95.766 2244 81 8 4060 6293 619509822 619512061 0.000000e+00 3605.0
9 TraesCS5D01G444500 chr5A 90.923 1939 98 16 2187 4062 619507799 619509722 0.000000e+00 2534.0
10 TraesCS5D01G444500 chr5A 89.329 1668 99 34 559 2189 619506226 619507851 0.000000e+00 2021.0
11 TraesCS5D01G444500 chr5A 95.833 48 2 0 484 531 619506183 619506230 1.880000e-10 78.7
12 TraesCS5D01G444500 chr7D 90.847 1027 68 15 1424 2450 36274581 36275581 0.000000e+00 1352.0
13 TraesCS5D01G444500 chr7D 90.551 254 18 1 1162 1415 36274297 36274544 1.310000e-86 331.0
14 TraesCS5D01G444500 chr7D 94.872 39 2 0 1501 1539 36274544 36274582 1.890000e-05 62.1
15 TraesCS5D01G444500 chr2D 94.637 317 17 0 1 317 608522550 608522866 5.670000e-135 492.0
16 TraesCS5D01G444500 chr2A 94.637 317 17 0 1 317 45049281 45049597 5.670000e-135 492.0
17 TraesCS5D01G444500 chr7B 94.006 317 19 0 1 317 508821783 508821467 1.230000e-131 481.0
18 TraesCS5D01G444500 chr1B 94.006 317 19 0 1 317 684111593 684111909 1.230000e-131 481.0
19 TraesCS5D01G444500 chr6A 94.006 317 18 1 1 317 98973526 98973211 4.410000e-131 479.0
20 TraesCS5D01G444500 chr6A 93.016 315 22 0 3 317 480628498 480628184 1.600000e-125 460.0
21 TraesCS5D01G444500 chr2B 93.949 314 19 0 1 314 65070003 65070316 5.710000e-130 475.0
22 TraesCS5D01G444500 chr4B 93.082 318 21 1 1 317 574057582 574057265 1.240000e-126 464.0
23 TraesCS5D01G444500 chr4B 97.059 68 2 0 2848 2915 663403758 663403825 1.430000e-21 115.0
24 TraesCS5D01G444500 chr4B 95.588 68 3 0 2848 2915 663308234 663308301 6.670000e-20 110.0
25 TraesCS5D01G444500 chr4B 92.958 71 5 0 2848 2918 663405180 663405110 3.100000e-18 104.0
26 TraesCS5D01G444500 chr3B 88.485 165 18 1 3362 3526 127308370 127308533 1.380000e-46 198.0
27 TraesCS5D01G444500 chr4A 93.750 64 4 0 4354 4417 433877690 433877753 5.190000e-16 97.1
28 TraesCS5D01G444500 chr4A 93.750 64 4 0 4354 4417 433906952 433907015 5.190000e-16 97.1
29 TraesCS5D01G444500 chr7A 96.296 54 2 0 2449 2502 731066095 731066148 8.690000e-14 89.8
30 TraesCS5D01G444500 chr7A 96.226 53 2 0 2450 2502 731459971 731460023 3.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G444500 chr5D 495464836 495471128 6292 False 11622.000 11622 100.00000 1 6293 1 chr5D.!!$F2 6292
1 TraesCS5D01G444500 chr5B 612021931 612029289 7358 False 2100.475 4833 89.36875 537 6269 4 chr5B.!!$F1 5732
2 TraesCS5D01G444500 chr5A 619506183 619512061 5878 False 2059.675 3605 92.96275 484 6293 4 chr5A.!!$F1 5809
3 TraesCS5D01G444500 chr7D 36274297 36275581 1284 False 581.700 1352 92.09000 1162 2450 3 chr7D.!!$F1 1288

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.038709 AGCTTCGATCGCTGGATAGC 60.039 55.000 11.09 11.32 46.62 2.97 F
670 684 0.105778 CAGCGAGGATTCTTCTCCCC 59.894 60.000 0.00 0.00 35.79 4.81 F
1288 1339 0.749454 CAAGATCCCAAGGAAGCCGG 60.749 60.000 0.00 0.00 34.34 6.13 F
2440 2528 1.142965 GTTGGCCGCCAAACAAAGT 59.857 52.632 26.44 0.00 45.73 2.66 F
3907 4055 0.179150 GGCAGTCGAGCTAGACACTG 60.179 60.000 26.01 17.95 43.24 3.66 F
4153 4403 0.526662 AGTTTCTCTAGTGCGTCCCG 59.473 55.000 0.00 0.00 0.00 5.14 F
5072 5364 1.003355 ATGACCACAGCCAGTTCGG 60.003 57.895 0.00 0.00 38.11 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1732 0.249120 CAACACAGGGATAGCGGTGA 59.751 55.000 0.00 0.00 35.33 4.02 R
1714 1796 1.294138 GGCAGTGCAATGTGGCATT 59.706 52.632 18.61 0.00 46.92 3.56 R
3032 3180 2.643551 AGGAACTCCCATAATGCAACG 58.356 47.619 0.00 0.00 37.41 4.10 R
4360 4613 1.674221 GGCACATCTCTGTCTGACACC 60.674 57.143 6.36 0.14 31.62 4.16 R
4727 4980 0.531974 GTTCCAGTTGTGTCCGCAGA 60.532 55.000 0.00 0.00 0.00 4.26 R
5202 5494 1.664321 GCTCAGGAAATGCAGCTGGG 61.664 60.000 17.12 0.00 32.54 4.45 R
6190 6504 3.314080 CAGCAACCGGTTAGAAACTCAAA 59.686 43.478 21.79 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.882179 GGAATTACAATCCAGTTTACACAAGT 58.118 34.615 0.00 0.00 36.92 3.16
26 27 8.021396 GGAATTACAATCCAGTTTACACAAGTC 58.979 37.037 0.00 0.00 36.92 3.01
27 28 6.870971 TTACAATCCAGTTTACACAAGTCC 57.129 37.500 0.00 0.00 0.00 3.85
28 29 4.787551 ACAATCCAGTTTACACAAGTCCA 58.212 39.130 0.00 0.00 0.00 4.02
29 30 4.578928 ACAATCCAGTTTACACAAGTCCAC 59.421 41.667 0.00 0.00 0.00 4.02
30 31 3.916359 TCCAGTTTACACAAGTCCACA 57.084 42.857 0.00 0.00 0.00 4.17
31 32 4.223556 TCCAGTTTACACAAGTCCACAA 57.776 40.909 0.00 0.00 0.00 3.33
32 33 3.942748 TCCAGTTTACACAAGTCCACAAC 59.057 43.478 0.00 0.00 0.00 3.32
33 34 3.066203 CCAGTTTACACAAGTCCACAACC 59.934 47.826 0.00 0.00 0.00 3.77
34 35 3.945285 CAGTTTACACAAGTCCACAACCT 59.055 43.478 0.00 0.00 0.00 3.50
35 36 5.120399 CAGTTTACACAAGTCCACAACCTA 58.880 41.667 0.00 0.00 0.00 3.08
36 37 5.587043 CAGTTTACACAAGTCCACAACCTAA 59.413 40.000 0.00 0.00 0.00 2.69
37 38 5.820947 AGTTTACACAAGTCCACAACCTAAG 59.179 40.000 0.00 0.00 0.00 2.18
38 39 3.208747 ACACAAGTCCACAACCTAAGG 57.791 47.619 0.00 0.00 0.00 2.69
39 40 2.158667 ACACAAGTCCACAACCTAAGGG 60.159 50.000 0.00 0.00 38.88 3.95
40 41 1.423921 ACAAGTCCACAACCTAAGGGG 59.576 52.381 0.00 0.00 41.89 4.79
41 42 1.073098 AAGTCCACAACCTAAGGGGG 58.927 55.000 0.00 0.00 40.03 5.40
42 43 0.195096 AGTCCACAACCTAAGGGGGA 59.805 55.000 0.00 0.00 40.03 4.81
43 44 0.327259 GTCCACAACCTAAGGGGGAC 59.673 60.000 0.00 0.00 40.03 4.46
56 57 4.410400 GGGACCAGAGCCCAACCG 62.410 72.222 0.00 0.00 45.31 4.44
57 58 3.319198 GGACCAGAGCCCAACCGA 61.319 66.667 0.00 0.00 0.00 4.69
58 59 2.747686 GACCAGAGCCCAACCGAA 59.252 61.111 0.00 0.00 0.00 4.30
59 60 1.671379 GACCAGAGCCCAACCGAAC 60.671 63.158 0.00 0.00 0.00 3.95
60 61 2.113243 GACCAGAGCCCAACCGAACT 62.113 60.000 0.00 0.00 0.00 3.01
61 62 0.834687 ACCAGAGCCCAACCGAACTA 60.835 55.000 0.00 0.00 0.00 2.24
62 63 0.391263 CCAGAGCCCAACCGAACTAC 60.391 60.000 0.00 0.00 0.00 2.73
63 64 0.608640 CAGAGCCCAACCGAACTACT 59.391 55.000 0.00 0.00 0.00 2.57
64 65 0.608640 AGAGCCCAACCGAACTACTG 59.391 55.000 0.00 0.00 0.00 2.74
65 66 0.320697 GAGCCCAACCGAACTACTGT 59.679 55.000 0.00 0.00 0.00 3.55
66 67 0.763035 AGCCCAACCGAACTACTGTT 59.237 50.000 0.00 0.00 39.42 3.16
67 68 1.154197 GCCCAACCGAACTACTGTTC 58.846 55.000 0.00 0.00 46.59 3.18
81 82 8.874744 GAACTACTGTTCTACTTTCAGTTCTT 57.125 34.615 2.52 0.00 46.56 2.52
82 83 8.649973 AACTACTGTTCTACTTTCAGTTCTTG 57.350 34.615 2.52 0.00 41.66 3.02
83 84 5.993106 ACTGTTCTACTTTCAGTTCTTGC 57.007 39.130 0.00 0.00 39.00 4.01
84 85 5.428253 ACTGTTCTACTTTCAGTTCTTGCA 58.572 37.500 0.00 0.00 39.00 4.08
85 86 5.880332 ACTGTTCTACTTTCAGTTCTTGCAA 59.120 36.000 0.00 0.00 39.00 4.08
86 87 6.374333 ACTGTTCTACTTTCAGTTCTTGCAAA 59.626 34.615 0.00 0.00 39.00 3.68
87 88 7.067494 ACTGTTCTACTTTCAGTTCTTGCAAAT 59.933 33.333 0.00 0.00 39.00 2.32
88 89 7.771183 TGTTCTACTTTCAGTTCTTGCAAATT 58.229 30.769 0.00 0.00 0.00 1.82
89 90 8.250332 TGTTCTACTTTCAGTTCTTGCAAATTT 58.750 29.630 0.00 0.00 0.00 1.82
90 91 9.730420 GTTCTACTTTCAGTTCTTGCAAATTTA 57.270 29.630 0.00 0.00 0.00 1.40
91 92 9.950680 TTCTACTTTCAGTTCTTGCAAATTTAG 57.049 29.630 0.00 0.00 0.00 1.85
92 93 8.076178 TCTACTTTCAGTTCTTGCAAATTTAGC 58.924 33.333 0.00 0.00 0.00 3.09
93 94 6.809869 ACTTTCAGTTCTTGCAAATTTAGCT 58.190 32.000 0.00 0.00 0.00 3.32
94 95 7.940850 ACTTTCAGTTCTTGCAAATTTAGCTA 58.059 30.769 0.00 0.00 0.00 3.32
95 96 8.413229 ACTTTCAGTTCTTGCAAATTTAGCTAA 58.587 29.630 0.86 0.86 0.00 3.09
96 97 9.248291 CTTTCAGTTCTTGCAAATTTAGCTAAA 57.752 29.630 20.71 20.71 0.00 1.85
97 98 9.762933 TTTCAGTTCTTGCAAATTTAGCTAAAT 57.237 25.926 23.22 23.22 37.49 1.40
103 104 8.560576 TCTTGCAAATTTAGCTAAATAATCGC 57.439 30.769 27.63 24.57 35.00 4.58
104 105 8.405531 TCTTGCAAATTTAGCTAAATAATCGCT 58.594 29.630 27.63 11.66 35.00 4.93
105 106 9.663904 CTTGCAAATTTAGCTAAATAATCGCTA 57.336 29.630 27.63 21.13 35.00 4.26
107 108 9.445786 TGCAAATTTAGCTAAATAATCGCTAAC 57.554 29.630 27.63 12.68 43.55 2.34
108 109 8.902735 GCAAATTTAGCTAAATAATCGCTAACC 58.097 33.333 27.63 7.68 43.55 2.85
109 110 9.944663 CAAATTTAGCTAAATAATCGCTAACCA 57.055 29.630 27.63 0.00 43.55 3.67
140 141 9.607988 TTGGTTACGATTGATATGAAATACACT 57.392 29.630 0.00 0.00 0.00 3.55
146 147 9.817809 ACGATTGATATGAAATACACTAGTTGT 57.182 29.630 0.00 0.00 42.84 3.32
153 154 9.745880 ATATGAAATACACTAGTTGTACGAAGG 57.254 33.333 0.00 0.00 43.71 3.46
154 155 6.392354 TGAAATACACTAGTTGTACGAAGGG 58.608 40.000 0.00 0.00 43.71 3.95
155 156 6.209192 TGAAATACACTAGTTGTACGAAGGGA 59.791 38.462 0.00 0.00 43.71 4.20
156 157 3.930634 ACACTAGTTGTACGAAGGGAC 57.069 47.619 0.00 0.00 36.32 4.46
157 158 3.225104 ACACTAGTTGTACGAAGGGACA 58.775 45.455 0.00 0.00 36.32 4.02
158 159 3.830755 ACACTAGTTGTACGAAGGGACAT 59.169 43.478 0.00 0.00 36.32 3.06
159 160 4.082354 ACACTAGTTGTACGAAGGGACATC 60.082 45.833 0.00 0.00 36.32 3.06
160 161 4.082408 CACTAGTTGTACGAAGGGACATCA 60.082 45.833 0.00 0.00 0.00 3.07
161 162 4.525487 ACTAGTTGTACGAAGGGACATCAA 59.475 41.667 0.00 0.00 0.00 2.57
162 163 3.926616 AGTTGTACGAAGGGACATCAAG 58.073 45.455 0.00 0.00 0.00 3.02
163 164 3.323979 AGTTGTACGAAGGGACATCAAGT 59.676 43.478 0.00 0.00 0.00 3.16
164 165 3.313012 TGTACGAAGGGACATCAAGTG 57.687 47.619 0.00 0.00 0.00 3.16
165 166 2.631062 TGTACGAAGGGACATCAAGTGT 59.369 45.455 0.00 0.00 45.83 3.55
179 180 7.840342 ACATCAAGTGTCTAATCTCATTCAC 57.160 36.000 0.00 0.00 35.77 3.18
180 181 6.820656 ACATCAAGTGTCTAATCTCATTCACC 59.179 38.462 0.00 0.00 35.77 4.02
181 182 6.358974 TCAAGTGTCTAATCTCATTCACCA 57.641 37.500 0.00 0.00 0.00 4.17
182 183 6.768483 TCAAGTGTCTAATCTCATTCACCAA 58.232 36.000 0.00 0.00 0.00 3.67
183 184 6.875726 TCAAGTGTCTAATCTCATTCACCAAG 59.124 38.462 0.00 0.00 0.00 3.61
184 185 5.738909 AGTGTCTAATCTCATTCACCAAGG 58.261 41.667 0.00 0.00 0.00 3.61
185 186 5.485353 AGTGTCTAATCTCATTCACCAAGGA 59.515 40.000 0.00 0.00 0.00 3.36
186 187 5.814705 GTGTCTAATCTCATTCACCAAGGAG 59.185 44.000 0.00 0.00 41.06 3.69
187 188 5.104776 TGTCTAATCTCATTCACCAAGGAGG 60.105 44.000 0.00 0.00 40.27 4.30
188 189 2.725221 ATCTCATTCACCAAGGAGGC 57.275 50.000 0.00 0.00 40.27 4.70
189 190 1.361204 TCTCATTCACCAAGGAGGCA 58.639 50.000 0.00 0.00 40.27 4.75
190 191 1.704628 TCTCATTCACCAAGGAGGCAA 59.295 47.619 0.00 0.00 40.27 4.52
191 192 2.108075 TCTCATTCACCAAGGAGGCAAA 59.892 45.455 0.00 0.00 40.27 3.68
192 193 3.094572 CTCATTCACCAAGGAGGCAAAT 58.905 45.455 0.00 0.00 43.14 2.32
193 194 4.018506 TCTCATTCACCAAGGAGGCAAATA 60.019 41.667 0.00 0.00 40.27 1.40
194 195 4.870636 TCATTCACCAAGGAGGCAAATAT 58.129 39.130 0.00 0.00 43.14 1.28
195 196 6.012337 TCATTCACCAAGGAGGCAAATATA 57.988 37.500 0.00 0.00 43.14 0.86
196 197 6.064060 TCATTCACCAAGGAGGCAAATATAG 58.936 40.000 0.00 0.00 43.14 1.31
197 198 5.708736 TTCACCAAGGAGGCAAATATAGA 57.291 39.130 0.00 0.00 43.14 1.98
198 199 5.036117 TCACCAAGGAGGCAAATATAGAC 57.964 43.478 0.00 0.00 43.14 2.59
199 200 4.137543 CACCAAGGAGGCAAATATAGACC 58.862 47.826 0.00 0.00 43.14 3.85
200 201 4.047883 ACCAAGGAGGCAAATATAGACCT 58.952 43.478 0.00 0.00 43.14 3.85
201 202 5.071788 CACCAAGGAGGCAAATATAGACCTA 59.928 44.000 0.00 0.00 43.14 3.08
202 203 5.852250 ACCAAGGAGGCAAATATAGACCTAT 59.148 40.000 0.00 0.00 43.14 2.57
203 204 6.013293 ACCAAGGAGGCAAATATAGACCTATC 60.013 42.308 0.00 0.00 43.14 2.08
204 205 6.410540 CAAGGAGGCAAATATAGACCTATCC 58.589 44.000 0.00 0.00 30.95 2.59
205 206 4.712337 AGGAGGCAAATATAGACCTATCCG 59.288 45.833 0.00 0.00 30.95 4.18
206 207 4.466726 GGAGGCAAATATAGACCTATCCGT 59.533 45.833 0.00 0.00 30.95 4.69
207 208 5.407407 AGGCAAATATAGACCTATCCGTG 57.593 43.478 0.00 0.00 0.00 4.94
208 209 4.838986 AGGCAAATATAGACCTATCCGTGT 59.161 41.667 0.00 0.00 0.00 4.49
209 210 5.047235 AGGCAAATATAGACCTATCCGTGTC 60.047 44.000 0.00 0.00 0.00 3.67
210 211 5.047235 GGCAAATATAGACCTATCCGTGTCT 60.047 44.000 0.00 0.00 43.85 3.41
211 212 6.094061 GCAAATATAGACCTATCCGTGTCTC 58.906 44.000 0.00 0.00 40.84 3.36
212 213 6.071840 GCAAATATAGACCTATCCGTGTCTCT 60.072 42.308 0.00 0.00 40.84 3.10
213 214 7.309177 CAAATATAGACCTATCCGTGTCTCTG 58.691 42.308 0.00 0.00 40.84 3.35
214 215 2.810870 AGACCTATCCGTGTCTCTGT 57.189 50.000 0.00 0.00 37.24 3.41
215 216 2.645802 AGACCTATCCGTGTCTCTGTC 58.354 52.381 0.00 0.00 37.24 3.51
216 217 1.677052 GACCTATCCGTGTCTCTGTCC 59.323 57.143 0.00 0.00 0.00 4.02
217 218 1.285373 ACCTATCCGTGTCTCTGTCCT 59.715 52.381 0.00 0.00 0.00 3.85
218 219 2.291670 ACCTATCCGTGTCTCTGTCCTT 60.292 50.000 0.00 0.00 0.00 3.36
219 220 3.053842 ACCTATCCGTGTCTCTGTCCTTA 60.054 47.826 0.00 0.00 0.00 2.69
220 221 3.952323 CCTATCCGTGTCTCTGTCCTTAA 59.048 47.826 0.00 0.00 0.00 1.85
221 222 3.870633 ATCCGTGTCTCTGTCCTTAAC 57.129 47.619 0.00 0.00 0.00 2.01
222 223 1.891150 TCCGTGTCTCTGTCCTTAACC 59.109 52.381 0.00 0.00 0.00 2.85
223 224 1.616865 CCGTGTCTCTGTCCTTAACCA 59.383 52.381 0.00 0.00 0.00 3.67
224 225 2.233922 CCGTGTCTCTGTCCTTAACCAT 59.766 50.000 0.00 0.00 0.00 3.55
225 226 3.446161 CCGTGTCTCTGTCCTTAACCATA 59.554 47.826 0.00 0.00 0.00 2.74
226 227 4.099573 CCGTGTCTCTGTCCTTAACCATAT 59.900 45.833 0.00 0.00 0.00 1.78
227 228 5.395324 CCGTGTCTCTGTCCTTAACCATATT 60.395 44.000 0.00 0.00 0.00 1.28
228 229 5.749109 CGTGTCTCTGTCCTTAACCATATTC 59.251 44.000 0.00 0.00 0.00 1.75
229 230 6.627287 CGTGTCTCTGTCCTTAACCATATTCA 60.627 42.308 0.00 0.00 0.00 2.57
230 231 6.535508 GTGTCTCTGTCCTTAACCATATTCAC 59.464 42.308 0.00 0.00 0.00 3.18
231 232 6.049790 GTCTCTGTCCTTAACCATATTCACC 58.950 44.000 0.00 0.00 0.00 4.02
232 233 5.018539 TCTGTCCTTAACCATATTCACCG 57.981 43.478 0.00 0.00 0.00 4.94
233 234 3.537580 TGTCCTTAACCATATTCACCGC 58.462 45.455 0.00 0.00 0.00 5.68
234 235 2.876550 GTCCTTAACCATATTCACCGCC 59.123 50.000 0.00 0.00 0.00 6.13
235 236 2.506231 TCCTTAACCATATTCACCGCCA 59.494 45.455 0.00 0.00 0.00 5.69
236 237 2.616842 CCTTAACCATATTCACCGCCAC 59.383 50.000 0.00 0.00 0.00 5.01
237 238 3.541632 CTTAACCATATTCACCGCCACT 58.458 45.455 0.00 0.00 0.00 4.00
238 239 4.443739 CCTTAACCATATTCACCGCCACTA 60.444 45.833 0.00 0.00 0.00 2.74
239 240 2.614829 ACCATATTCACCGCCACTAC 57.385 50.000 0.00 0.00 0.00 2.73
240 241 1.834896 ACCATATTCACCGCCACTACA 59.165 47.619 0.00 0.00 0.00 2.74
241 242 2.158957 ACCATATTCACCGCCACTACAG 60.159 50.000 0.00 0.00 0.00 2.74
242 243 2.102420 CCATATTCACCGCCACTACAGA 59.898 50.000 0.00 0.00 0.00 3.41
243 244 3.431626 CCATATTCACCGCCACTACAGAA 60.432 47.826 0.00 0.00 0.00 3.02
244 245 4.380531 CATATTCACCGCCACTACAGAAT 58.619 43.478 0.00 0.00 0.00 2.40
245 246 2.380084 TTCACCGCCACTACAGAATC 57.620 50.000 0.00 0.00 0.00 2.52
246 247 0.535335 TCACCGCCACTACAGAATCC 59.465 55.000 0.00 0.00 0.00 3.01
247 248 0.249120 CACCGCCACTACAGAATCCA 59.751 55.000 0.00 0.00 0.00 3.41
248 249 1.134401 CACCGCCACTACAGAATCCAT 60.134 52.381 0.00 0.00 0.00 3.41
249 250 1.559682 ACCGCCACTACAGAATCCATT 59.440 47.619 0.00 0.00 0.00 3.16
250 251 2.026262 ACCGCCACTACAGAATCCATTT 60.026 45.455 0.00 0.00 0.00 2.32
251 252 2.355756 CCGCCACTACAGAATCCATTTG 59.644 50.000 0.00 0.00 0.00 2.32
252 253 2.223340 CGCCACTACAGAATCCATTTGC 60.223 50.000 0.00 0.00 0.00 3.68
253 254 2.754552 GCCACTACAGAATCCATTTGCA 59.245 45.455 0.00 0.00 0.00 4.08
254 255 3.428045 GCCACTACAGAATCCATTTGCAC 60.428 47.826 0.00 0.00 0.00 4.57
255 256 3.758023 CCACTACAGAATCCATTTGCACA 59.242 43.478 0.00 0.00 0.00 4.57
256 257 4.379813 CCACTACAGAATCCATTTGCACAC 60.380 45.833 0.00 0.00 0.00 3.82
257 258 4.216042 CACTACAGAATCCATTTGCACACA 59.784 41.667 0.00 0.00 0.00 3.72
258 259 4.826733 ACTACAGAATCCATTTGCACACAA 59.173 37.500 0.00 0.00 0.00 3.33
267 268 2.697431 TTTGCACACAAATCGGTAGC 57.303 45.000 0.00 0.00 40.84 3.58
268 269 1.890876 TTGCACACAAATCGGTAGCT 58.109 45.000 0.00 0.00 31.21 3.32
269 270 1.890876 TGCACACAAATCGGTAGCTT 58.109 45.000 0.00 0.00 0.00 3.74
270 271 1.804151 TGCACACAAATCGGTAGCTTC 59.196 47.619 0.00 0.00 0.00 3.86
271 272 1.201921 GCACACAAATCGGTAGCTTCG 60.202 52.381 0.00 0.00 0.00 3.79
272 273 2.333926 CACACAAATCGGTAGCTTCGA 58.666 47.619 12.96 12.96 41.04 3.71
274 275 3.000322 CACACAAATCGGTAGCTTCGATC 60.000 47.826 19.94 0.00 45.20 3.69
275 276 2.216488 CACAAATCGGTAGCTTCGATCG 59.784 50.000 19.94 9.36 45.20 3.69
276 277 1.190323 CAAATCGGTAGCTTCGATCGC 59.810 52.381 19.94 0.00 45.20 4.58
277 278 0.669077 AATCGGTAGCTTCGATCGCT 59.331 50.000 19.94 13.34 45.20 4.93
278 279 0.039978 ATCGGTAGCTTCGATCGCTG 60.040 55.000 11.09 6.53 42.82 5.18
279 280 1.658717 CGGTAGCTTCGATCGCTGG 60.659 63.158 11.09 3.87 38.38 4.85
280 281 1.734137 GGTAGCTTCGATCGCTGGA 59.266 57.895 11.09 0.00 38.38 3.86
281 282 0.315568 GGTAGCTTCGATCGCTGGAT 59.684 55.000 11.09 4.08 38.38 3.41
282 283 1.540267 GGTAGCTTCGATCGCTGGATA 59.460 52.381 11.09 3.07 38.38 2.59
283 284 2.414824 GGTAGCTTCGATCGCTGGATAG 60.415 54.545 11.09 1.93 38.38 2.08
284 285 0.038709 AGCTTCGATCGCTGGATAGC 60.039 55.000 11.09 11.32 46.62 2.97
298 299 5.559148 CTGGATAGCAAGAGAAATACCCT 57.441 43.478 0.00 0.00 0.00 4.34
299 300 5.546526 CTGGATAGCAAGAGAAATACCCTC 58.453 45.833 0.00 0.00 0.00 4.30
300 301 5.219739 TGGATAGCAAGAGAAATACCCTCT 58.780 41.667 0.00 0.00 42.37 3.69
301 302 6.382087 TGGATAGCAAGAGAAATACCCTCTA 58.618 40.000 0.00 0.00 39.88 2.43
302 303 7.019388 TGGATAGCAAGAGAAATACCCTCTAT 58.981 38.462 0.00 0.00 39.88 1.98
303 304 7.038729 TGGATAGCAAGAGAAATACCCTCTATG 60.039 40.741 0.00 0.00 39.88 2.23
304 305 4.967036 AGCAAGAGAAATACCCTCTATGC 58.033 43.478 1.14 1.14 39.88 3.14
305 306 4.410228 AGCAAGAGAAATACCCTCTATGCA 59.590 41.667 19.16 0.00 41.57 3.96
306 307 5.104360 AGCAAGAGAAATACCCTCTATGCAA 60.104 40.000 19.16 0.00 41.57 4.08
307 308 5.238214 GCAAGAGAAATACCCTCTATGCAAG 59.762 44.000 15.48 0.00 39.88 4.01
308 309 4.967036 AGAGAAATACCCTCTATGCAAGC 58.033 43.478 0.00 0.00 39.07 4.01
309 310 4.410228 AGAGAAATACCCTCTATGCAAGCA 59.590 41.667 0.00 0.00 39.07 3.91
310 311 4.455606 AGAAATACCCTCTATGCAAGCAC 58.544 43.478 0.00 0.00 0.00 4.40
311 312 3.931907 AATACCCTCTATGCAAGCACA 57.068 42.857 0.00 0.00 0.00 4.57
312 313 4.443978 AATACCCTCTATGCAAGCACAT 57.556 40.909 0.00 0.00 0.00 3.21
313 314 5.567037 AATACCCTCTATGCAAGCACATA 57.433 39.130 0.00 0.00 0.00 2.29
315 316 2.774234 ACCCTCTATGCAAGCACATAGT 59.226 45.455 16.38 1.70 46.38 2.12
316 317 3.200825 ACCCTCTATGCAAGCACATAGTT 59.799 43.478 16.38 3.32 46.38 2.24
317 318 4.408921 ACCCTCTATGCAAGCACATAGTTA 59.591 41.667 16.38 3.40 46.38 2.24
318 319 5.072329 ACCCTCTATGCAAGCACATAGTTAT 59.928 40.000 16.38 4.19 46.38 1.89
319 320 6.270000 ACCCTCTATGCAAGCACATAGTTATA 59.730 38.462 16.38 2.62 46.38 0.98
320 321 6.591834 CCCTCTATGCAAGCACATAGTTATAC 59.408 42.308 16.38 0.00 46.38 1.47
321 322 6.591834 CCTCTATGCAAGCACATAGTTATACC 59.408 42.308 16.38 0.00 46.38 2.73
322 323 6.156519 TCTATGCAAGCACATAGTTATACCG 58.843 40.000 16.38 0.00 46.38 4.02
323 324 3.462982 TGCAAGCACATAGTTATACCGG 58.537 45.455 0.00 0.00 0.00 5.28
324 325 3.133183 TGCAAGCACATAGTTATACCGGA 59.867 43.478 9.46 0.00 0.00 5.14
325 326 4.202315 TGCAAGCACATAGTTATACCGGAT 60.202 41.667 9.46 0.00 0.00 4.18
326 327 4.152402 GCAAGCACATAGTTATACCGGATG 59.848 45.833 9.46 1.12 0.00 3.51
327 328 5.538118 CAAGCACATAGTTATACCGGATGA 58.462 41.667 9.46 0.00 0.00 2.92
328 329 5.135508 AGCACATAGTTATACCGGATGAC 57.864 43.478 9.46 4.52 0.00 3.06
329 330 4.021368 AGCACATAGTTATACCGGATGACC 60.021 45.833 9.46 0.00 0.00 4.02
330 331 4.817517 CACATAGTTATACCGGATGACCC 58.182 47.826 9.46 0.00 0.00 4.46
355 356 1.214062 CGGGATCCGCTAGAGATGC 59.786 63.158 5.45 0.00 41.17 3.91
356 357 1.247419 CGGGATCCGCTAGAGATGCT 61.247 60.000 5.45 0.00 41.17 3.79
357 358 0.530288 GGGATCCGCTAGAGATGCTC 59.470 60.000 5.45 0.00 33.05 4.26
358 359 1.544724 GGATCCGCTAGAGATGCTCT 58.455 55.000 0.00 2.22 43.83 4.09
359 360 1.472480 GGATCCGCTAGAGATGCTCTC 59.528 57.143 0.00 5.36 43.70 3.20
360 361 2.158559 GATCCGCTAGAGATGCTCTCA 58.841 52.381 13.42 2.40 45.73 3.27
361 362 2.284754 TCCGCTAGAGATGCTCTCAT 57.715 50.000 13.42 4.25 45.73 2.90
362 363 2.158559 TCCGCTAGAGATGCTCTCATC 58.841 52.381 13.42 0.00 45.73 2.92
421 422 8.521170 AGTACTACTGTATGACAATCTTAGCA 57.479 34.615 0.00 0.00 0.00 3.49
422 423 8.407064 AGTACTACTGTATGACAATCTTAGCAC 58.593 37.037 0.00 0.00 0.00 4.40
423 424 7.170393 ACTACTGTATGACAATCTTAGCACA 57.830 36.000 0.00 0.00 0.00 4.57
424 425 7.611770 ACTACTGTATGACAATCTTAGCACAA 58.388 34.615 0.00 0.00 0.00 3.33
425 426 8.094548 ACTACTGTATGACAATCTTAGCACAAA 58.905 33.333 0.00 0.00 0.00 2.83
426 427 7.928307 ACTGTATGACAATCTTAGCACAAAT 57.072 32.000 0.00 0.00 0.00 2.32
427 428 8.340618 ACTGTATGACAATCTTAGCACAAATT 57.659 30.769 0.00 0.00 0.00 1.82
428 429 8.796475 ACTGTATGACAATCTTAGCACAAATTT 58.204 29.630 0.00 0.00 0.00 1.82
429 430 9.282247 CTGTATGACAATCTTAGCACAAATTTC 57.718 33.333 0.00 0.00 0.00 2.17
430 431 8.791675 TGTATGACAATCTTAGCACAAATTTCA 58.208 29.630 0.00 0.00 0.00 2.69
431 432 9.624697 GTATGACAATCTTAGCACAAATTTCAA 57.375 29.630 0.00 0.00 0.00 2.69
433 434 9.715121 ATGACAATCTTAGCACAAATTTCAAAT 57.285 25.926 0.00 0.00 0.00 2.32
434 435 8.980610 TGACAATCTTAGCACAAATTTCAAATG 58.019 29.630 0.00 0.00 0.00 2.32
435 436 9.195411 GACAATCTTAGCACAAATTTCAAATGA 57.805 29.630 0.00 0.00 0.00 2.57
436 437 8.981647 ACAATCTTAGCACAAATTTCAAATGAC 58.018 29.630 0.00 0.00 0.00 3.06
437 438 8.437742 CAATCTTAGCACAAATTTCAAATGACC 58.562 33.333 0.00 0.00 0.00 4.02
438 439 6.454795 TCTTAGCACAAATTTCAAATGACCC 58.545 36.000 0.00 0.00 0.00 4.46
439 440 4.961438 AGCACAAATTTCAAATGACCCT 57.039 36.364 0.00 0.00 0.00 4.34
440 441 4.634199 AGCACAAATTTCAAATGACCCTG 58.366 39.130 0.00 0.00 0.00 4.45
441 442 4.344679 AGCACAAATTTCAAATGACCCTGA 59.655 37.500 0.00 0.00 0.00 3.86
442 443 5.055812 GCACAAATTTCAAATGACCCTGAA 58.944 37.500 0.00 0.00 0.00 3.02
443 444 5.050159 GCACAAATTTCAAATGACCCTGAAC 60.050 40.000 0.00 0.00 31.41 3.18
444 445 6.047870 CACAAATTTCAAATGACCCTGAACA 58.952 36.000 0.00 0.00 31.41 3.18
445 446 6.018832 CACAAATTTCAAATGACCCTGAACAC 60.019 38.462 0.00 0.00 31.41 3.32
446 447 6.127083 ACAAATTTCAAATGACCCTGAACACT 60.127 34.615 0.00 0.00 31.41 3.55
447 448 7.069331 ACAAATTTCAAATGACCCTGAACACTA 59.931 33.333 0.00 0.00 31.41 2.74
448 449 6.824305 ATTTCAAATGACCCTGAACACTAG 57.176 37.500 0.00 0.00 31.41 2.57
449 450 4.286297 TCAAATGACCCTGAACACTAGG 57.714 45.455 0.00 0.00 35.01 3.02
450 451 3.907474 TCAAATGACCCTGAACACTAGGA 59.093 43.478 0.00 0.00 37.52 2.94
451 452 4.020218 TCAAATGACCCTGAACACTAGGAG 60.020 45.833 0.00 0.00 37.52 3.69
452 453 2.696526 TGACCCTGAACACTAGGAGT 57.303 50.000 0.00 0.00 37.52 3.85
453 454 3.820195 TGACCCTGAACACTAGGAGTA 57.180 47.619 0.00 0.00 37.52 2.59
454 455 3.698289 TGACCCTGAACACTAGGAGTAG 58.302 50.000 0.00 0.00 37.52 2.57
455 456 3.075582 TGACCCTGAACACTAGGAGTAGT 59.924 47.826 0.00 0.00 40.38 2.73
456 457 4.290459 TGACCCTGAACACTAGGAGTAGTA 59.710 45.833 0.00 0.00 37.40 1.82
457 458 4.598022 ACCCTGAACACTAGGAGTAGTAC 58.402 47.826 0.00 0.00 37.40 2.73
458 459 4.291777 ACCCTGAACACTAGGAGTAGTACT 59.708 45.833 1.37 1.37 37.40 2.73
459 460 5.490357 ACCCTGAACACTAGGAGTAGTACTA 59.510 44.000 1.88 0.00 37.40 1.82
460 461 6.056884 CCCTGAACACTAGGAGTAGTACTAG 58.943 48.000 14.44 14.44 37.40 2.57
461 462 5.528320 CCTGAACACTAGGAGTAGTACTAGC 59.472 48.000 15.75 1.68 40.19 3.42
462 463 6.058553 TGAACACTAGGAGTAGTACTAGCA 57.941 41.667 15.75 4.13 40.19 3.49
463 464 6.660800 TGAACACTAGGAGTAGTACTAGCAT 58.339 40.000 15.75 2.59 40.19 3.79
464 465 6.766944 TGAACACTAGGAGTAGTACTAGCATC 59.233 42.308 15.75 11.81 40.19 3.91
465 466 6.249911 ACACTAGGAGTAGTACTAGCATCA 57.750 41.667 15.75 0.00 40.19 3.07
466 467 6.843752 ACACTAGGAGTAGTACTAGCATCAT 58.156 40.000 15.75 2.79 40.19 2.45
467 468 7.975608 ACACTAGGAGTAGTACTAGCATCATA 58.024 38.462 15.75 3.79 40.19 2.15
468 469 8.098286 ACACTAGGAGTAGTACTAGCATCATAG 58.902 40.741 15.75 19.69 40.19 2.23
469 470 8.098286 CACTAGGAGTAGTACTAGCATCATAGT 58.902 40.741 20.52 20.52 40.19 2.12
470 471 9.324008 ACTAGGAGTAGTACTAGCATCATAGTA 57.676 37.037 22.74 7.23 40.19 1.82
471 472 9.811995 CTAGGAGTAGTACTAGCATCATAGTAG 57.188 40.741 16.14 7.52 38.58 2.57
472 473 7.107542 AGGAGTAGTACTAGCATCATAGTAGC 58.892 42.308 1.87 0.00 38.58 3.58
473 474 7.037873 AGGAGTAGTACTAGCATCATAGTAGCT 60.038 40.741 1.87 0.00 38.58 3.32
474 475 7.065324 GGAGTAGTACTAGCATCATAGTAGCTG 59.935 44.444 1.87 0.00 38.58 4.24
475 476 7.455058 AGTAGTACTAGCATCATAGTAGCTGT 58.545 38.462 1.87 0.00 38.58 4.40
476 477 8.595421 AGTAGTACTAGCATCATAGTAGCTGTA 58.405 37.037 1.87 0.00 38.58 2.74
477 478 9.386010 GTAGTACTAGCATCATAGTAGCTGTAT 57.614 37.037 1.87 0.00 38.58 2.29
478 479 8.871629 AGTACTAGCATCATAGTAGCTGTATT 57.128 34.615 0.00 0.00 38.58 1.89
479 480 8.735315 AGTACTAGCATCATAGTAGCTGTATTG 58.265 37.037 0.00 0.00 38.58 1.90
480 481 6.393990 ACTAGCATCATAGTAGCTGTATTGC 58.606 40.000 0.00 1.75 39.30 3.56
481 482 4.573900 AGCATCATAGTAGCTGTATTGCC 58.426 43.478 0.00 0.00 37.20 4.52
482 483 4.285517 AGCATCATAGTAGCTGTATTGCCT 59.714 41.667 0.00 0.00 37.20 4.75
524 525 2.108566 CTCTGCATGCGGAGGGAG 59.891 66.667 38.40 20.99 43.69 4.30
526 527 3.473647 CTGCATGCGGAGGGAGGA 61.474 66.667 22.55 0.00 0.00 3.71
527 528 2.769621 TGCATGCGGAGGGAGGAT 60.770 61.111 14.09 0.00 0.00 3.24
528 529 2.335092 CTGCATGCGGAGGGAGGATT 62.335 60.000 22.55 0.00 0.00 3.01
529 530 1.053835 TGCATGCGGAGGGAGGATTA 61.054 55.000 14.09 0.00 0.00 1.75
530 531 0.108585 GCATGCGGAGGGAGGATTAA 59.891 55.000 0.00 0.00 0.00 1.40
531 532 1.271597 GCATGCGGAGGGAGGATTAAT 60.272 52.381 0.00 0.00 0.00 1.40
532 533 2.815589 GCATGCGGAGGGAGGATTAATT 60.816 50.000 0.00 0.00 0.00 1.40
533 534 3.559171 GCATGCGGAGGGAGGATTAATTA 60.559 47.826 0.00 0.00 0.00 1.40
534 535 4.651778 CATGCGGAGGGAGGATTAATTAA 58.348 43.478 0.00 0.00 0.00 1.40
535 536 4.351874 TGCGGAGGGAGGATTAATTAAG 57.648 45.455 3.94 0.00 0.00 1.85
536 537 3.072476 TGCGGAGGGAGGATTAATTAAGG 59.928 47.826 3.94 0.00 0.00 2.69
537 538 3.676093 CGGAGGGAGGATTAATTAAGGC 58.324 50.000 3.94 0.00 0.00 4.35
538 539 3.676093 GGAGGGAGGATTAATTAAGGCG 58.324 50.000 3.94 0.00 0.00 5.52
539 540 3.559384 GGAGGGAGGATTAATTAAGGCGG 60.559 52.174 3.94 0.00 0.00 6.13
540 541 2.160205 GGGAGGATTAATTAAGGCGGC 58.840 52.381 0.00 0.00 0.00 6.53
541 542 1.804748 GGAGGATTAATTAAGGCGGCG 59.195 52.381 0.51 0.51 0.00 6.46
546 547 2.328819 TTAATTAAGGCGGCGGCTAA 57.671 45.000 36.34 26.98 37.50 3.09
556 557 4.710167 GCGGCTAACGGGGTGGTT 62.710 66.667 0.00 0.00 44.51 3.67
585 586 1.463674 GGCAACCAATGGGACTAGTG 58.536 55.000 0.00 0.00 38.05 2.74
586 587 1.271926 GGCAACCAATGGGACTAGTGT 60.272 52.381 0.00 0.00 38.05 3.55
655 669 1.154282 CATCAAGCACAGCACAGCG 60.154 57.895 0.00 0.00 35.48 5.18
665 679 1.005340 CAGCACAGCGAGGATTCTTC 58.995 55.000 0.00 0.00 0.00 2.87
670 684 0.105778 CAGCGAGGATTCTTCTCCCC 59.894 60.000 0.00 0.00 35.79 4.81
671 685 1.051556 AGCGAGGATTCTTCTCCCCC 61.052 60.000 0.00 0.00 35.79 5.40
672 686 1.338136 GCGAGGATTCTTCTCCCCCA 61.338 60.000 0.00 0.00 35.79 4.96
673 687 1.204146 CGAGGATTCTTCTCCCCCAA 58.796 55.000 0.00 0.00 35.79 4.12
674 688 1.559682 CGAGGATTCTTCTCCCCCAAA 59.440 52.381 0.00 0.00 35.79 3.28
676 690 1.282157 AGGATTCTTCTCCCCCAAACG 59.718 52.381 0.00 0.00 35.79 3.60
684 699 2.030412 CCCCCAAACGCCAAAAGC 59.970 61.111 0.00 0.00 38.52 3.51
728 743 2.429058 CCACCAGACAGCAGCAGT 59.571 61.111 0.00 0.00 0.00 4.40
733 748 4.385405 AGACAGCAGCAGTCCGCC 62.385 66.667 14.01 0.00 44.04 6.13
1277 1328 2.925162 CTTCGCCCGACCAAGATCCC 62.925 65.000 0.00 0.00 0.00 3.85
1278 1329 3.781307 CGCCCGACCAAGATCCCA 61.781 66.667 0.00 0.00 0.00 4.37
1279 1330 2.674754 GCCCGACCAAGATCCCAA 59.325 61.111 0.00 0.00 0.00 4.12
1288 1339 0.749454 CAAGATCCCAAGGAAGCCGG 60.749 60.000 0.00 0.00 34.34 6.13
1292 1343 4.033776 CCCAAGGAAGCCGGAGCA 62.034 66.667 5.05 0.00 43.56 4.26
1322 1373 4.790861 GGGGTTCTCGACGACGGC 62.791 72.222 7.55 0.00 40.21 5.68
1415 1466 3.433615 GTGCAGGTGAAACACATCTACTC 59.566 47.826 0.00 0.00 37.96 2.59
1576 1658 5.884322 TCTGATAGGATTTGGCTATTGCAT 58.116 37.500 0.66 0.00 41.91 3.96
1595 1677 6.270156 TGCATTGCTAGAATCAAACATTCA 57.730 33.333 10.49 0.00 0.00 2.57
1597 1679 6.587226 TGCATTGCTAGAATCAAACATTCAAC 59.413 34.615 10.49 0.00 0.00 3.18
1650 1732 8.477419 TTCATCAAGTTGTTATCCTCCTTTTT 57.523 30.769 2.11 0.00 0.00 1.94
1653 1735 7.272037 TCAAGTTGTTATCCTCCTTTTTCAC 57.728 36.000 2.11 0.00 0.00 3.18
1655 1737 4.760204 AGTTGTTATCCTCCTTTTTCACCG 59.240 41.667 0.00 0.00 0.00 4.94
1683 1765 2.884012 CTGTGTTGTATTGTGCCTCCAA 59.116 45.455 0.00 0.00 0.00 3.53
1686 1768 3.255642 GTGTTGTATTGTGCCTCCAATGT 59.744 43.478 4.21 0.00 35.85 2.71
1714 1796 5.489792 AAGTTTGATTCTGCACCTAGAGA 57.510 39.130 0.00 0.00 0.00 3.10
1860 1945 3.058983 CGCTGTGCTATTTGACTTTGTGA 60.059 43.478 0.00 0.00 0.00 3.58
1965 2050 2.025863 GCAGCTGGAGTTGGCCATAAT 61.026 52.381 17.12 0.00 37.30 1.28
1966 2051 1.679680 CAGCTGGAGTTGGCCATAATG 59.320 52.381 6.09 0.00 37.30 1.90
2150 2235 1.404986 CCCTTGAATCGGAGCACGTTA 60.405 52.381 0.00 0.00 44.69 3.18
2158 2243 5.123186 TGAATCGGAGCACGTTATTTTGATT 59.877 36.000 0.00 0.00 44.69 2.57
2189 2274 4.831107 AGAGGAGCTGAAGAAGAACAATC 58.169 43.478 0.00 0.00 0.00 2.67
2409 2497 4.056740 CAACATGAGCTAGATGCCTGTAG 58.943 47.826 0.00 0.00 44.23 2.74
2440 2528 1.142965 GTTGGCCGCCAAACAAAGT 59.857 52.632 26.44 0.00 45.73 2.66
2545 2654 2.415357 GGAAGAAGAGACTCGTCAGCTG 60.415 54.545 18.79 7.63 0.00 4.24
2759 2868 5.457140 TCTTTGAACAACGAATTATGGCAC 58.543 37.500 0.00 0.00 0.00 5.01
2763 2872 4.699735 TGAACAACGAATTATGGCACTGAT 59.300 37.500 0.00 0.00 0.00 2.90
2834 2955 7.818446 CCAGTCATTCTCATTATCAGATAGTGG 59.182 40.741 11.89 4.70 0.00 4.00
2908 3029 5.938125 GGATAGCTTTGAGGTTGTTAGTTCA 59.062 40.000 0.00 0.00 0.00 3.18
2919 3040 6.533730 AGGTTGTTAGTTCATTGATCTCACA 58.466 36.000 7.39 7.39 0.00 3.58
3057 3205 6.183360 CGTTGCATTATGGGAGTTCCTTAAAT 60.183 38.462 0.05 0.00 38.25 1.40
3155 3303 1.887242 GCGCGATTAGGCATGGACA 60.887 57.895 12.10 0.00 0.00 4.02
3323 3471 7.139392 GTGTTCATTGGAAGAAAAGGTAAGTC 58.861 38.462 0.00 0.00 32.62 3.01
3339 3487 1.866015 AGTCTGCCACTGCTGGTATA 58.134 50.000 0.00 0.00 40.17 1.47
3681 3829 5.704053 CCCGAGTAATATAAACAATGGGGTC 59.296 44.000 0.00 0.00 0.00 4.46
3907 4055 0.179150 GGCAGTCGAGCTAGACACTG 60.179 60.000 26.01 17.95 43.24 3.66
3993 4141 3.461773 ATGCAGGAGTCCGACCCG 61.462 66.667 2.76 0.00 0.00 5.28
4153 4403 0.526662 AGTTTCTCTAGTGCGTCCCG 59.473 55.000 0.00 0.00 0.00 5.14
4186 4439 3.487372 GACTACACTCAAGCCCCTTTTT 58.513 45.455 0.00 0.00 0.00 1.94
4244 4497 2.426522 GCATAGGACAGCAACAGACAA 58.573 47.619 0.00 0.00 0.00 3.18
4295 4548 8.472413 GGACTTGTACAACTCCATATACAGTAA 58.528 37.037 22.38 0.00 0.00 2.24
4300 4553 4.719773 ACAACTCCATATACAGTAAGGCCA 59.280 41.667 5.01 0.00 0.00 5.36
4310 4563 3.626930 ACAGTAAGGCCAAGTTGTTTCA 58.373 40.909 5.01 0.00 0.00 2.69
4438 4691 4.034510 GTGATTGGGACATCGAACTGATTC 59.965 45.833 0.00 0.00 39.30 2.52
4470 4723 5.537300 ACTCCACAGTTTATATCAGCGAT 57.463 39.130 0.00 0.00 0.00 4.58
4659 4912 1.465387 AGTAGGCCAAACCAGGGGT 60.465 57.895 5.01 0.00 43.14 4.95
4720 4973 4.455606 GAAAACCATCTATCCCAGGTCTG 58.544 47.826 0.00 0.00 32.05 3.51
4735 4994 1.202428 GGTCTGGAAGTATCTGCGGAC 60.202 57.143 0.00 0.00 33.76 4.79
4803 5062 5.587443 TGACATCATTGCTTTGATCTTCGAT 59.413 36.000 0.00 0.00 34.09 3.59
4810 5069 5.729974 TGCTTTGATCTTCGATGAGATTG 57.270 39.130 7.14 0.00 36.54 2.67
4829 5088 8.045507 TGAGATTGAGTTGCTTATTTCAGATCT 58.954 33.333 0.00 0.00 0.00 2.75
4921 5213 2.693591 CCTAGAGAAACCAGGCACGATA 59.306 50.000 0.00 0.00 0.00 2.92
4922 5214 3.322254 CCTAGAGAAACCAGGCACGATAT 59.678 47.826 0.00 0.00 0.00 1.63
5072 5364 1.003355 ATGACCACAGCCAGTTCGG 60.003 57.895 0.00 0.00 38.11 4.30
5321 5613 9.384764 ACTTTAGTTGGTATCAAAGAGATAAGC 57.615 33.333 0.00 0.00 40.76 3.09
5465 5757 4.979197 GCGTATCGAGACTTGAGAAATCAT 59.021 41.667 8.77 0.00 0.00 2.45
6190 6504 2.509243 AGATACCTCCTCCTCTGGTCT 58.491 52.381 0.00 0.00 35.48 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.021396 GGACTTGTGTAAACTGGATTGTAATTC 58.979 37.037 0.00 0.00 0.00 2.17
2 3 7.504238 TGGACTTGTGTAAACTGGATTGTAATT 59.496 33.333 0.00 0.00 0.00 1.40
3 4 7.001674 TGGACTTGTGTAAACTGGATTGTAAT 58.998 34.615 0.00 0.00 0.00 1.89
4 5 6.261381 GTGGACTTGTGTAAACTGGATTGTAA 59.739 38.462 0.00 0.00 0.00 2.41
5 6 5.761234 GTGGACTTGTGTAAACTGGATTGTA 59.239 40.000 0.00 0.00 0.00 2.41
7 8 4.578516 TGTGGACTTGTGTAAACTGGATTG 59.421 41.667 0.00 0.00 0.00 2.67
8 9 4.787551 TGTGGACTTGTGTAAACTGGATT 58.212 39.130 0.00 0.00 0.00 3.01
9 10 4.431416 TGTGGACTTGTGTAAACTGGAT 57.569 40.909 0.00 0.00 0.00 3.41
10 11 3.916359 TGTGGACTTGTGTAAACTGGA 57.084 42.857 0.00 0.00 0.00 3.86
11 12 3.066203 GGTTGTGGACTTGTGTAAACTGG 59.934 47.826 0.00 0.00 0.00 4.00
12 13 3.945285 AGGTTGTGGACTTGTGTAAACTG 59.055 43.478 0.00 0.00 0.00 3.16
13 14 4.230745 AGGTTGTGGACTTGTGTAAACT 57.769 40.909 0.00 0.00 0.00 2.66
14 15 5.008316 CCTTAGGTTGTGGACTTGTGTAAAC 59.992 44.000 0.00 0.00 0.00 2.01
15 16 5.127491 CCTTAGGTTGTGGACTTGTGTAAA 58.873 41.667 0.00 0.00 0.00 2.01
16 17 4.445162 CCCTTAGGTTGTGGACTTGTGTAA 60.445 45.833 0.00 0.00 0.00 2.41
17 18 3.071892 CCCTTAGGTTGTGGACTTGTGTA 59.928 47.826 0.00 0.00 0.00 2.90
18 19 2.158667 CCCTTAGGTTGTGGACTTGTGT 60.159 50.000 0.00 0.00 0.00 3.72
19 20 2.504367 CCCTTAGGTTGTGGACTTGTG 58.496 52.381 0.00 0.00 0.00 3.33
20 21 1.423921 CCCCTTAGGTTGTGGACTTGT 59.576 52.381 0.00 0.00 0.00 3.16
21 22 1.271926 CCCCCTTAGGTTGTGGACTTG 60.272 57.143 0.00 0.00 0.00 3.16
22 23 1.073098 CCCCCTTAGGTTGTGGACTT 58.927 55.000 0.00 0.00 0.00 3.01
23 24 0.195096 TCCCCCTTAGGTTGTGGACT 59.805 55.000 0.00 0.00 0.00 3.85
24 25 0.327259 GTCCCCCTTAGGTTGTGGAC 59.673 60.000 9.60 9.60 35.91 4.02
25 26 0.843343 GGTCCCCCTTAGGTTGTGGA 60.843 60.000 0.00 0.00 0.00 4.02
26 27 1.137594 TGGTCCCCCTTAGGTTGTGG 61.138 60.000 0.00 0.00 0.00 4.17
27 28 0.328258 CTGGTCCCCCTTAGGTTGTG 59.672 60.000 0.00 0.00 0.00 3.33
28 29 0.195096 TCTGGTCCCCCTTAGGTTGT 59.805 55.000 0.00 0.00 0.00 3.32
29 30 0.912486 CTCTGGTCCCCCTTAGGTTG 59.088 60.000 0.00 0.00 0.00 3.77
30 31 0.914902 GCTCTGGTCCCCCTTAGGTT 60.915 60.000 0.00 0.00 0.00 3.50
31 32 1.307084 GCTCTGGTCCCCCTTAGGT 60.307 63.158 0.00 0.00 0.00 3.08
32 33 2.073101 GGCTCTGGTCCCCCTTAGG 61.073 68.421 0.00 0.00 0.00 2.69
33 34 2.073101 GGGCTCTGGTCCCCCTTAG 61.073 68.421 0.00 0.00 37.81 2.18
34 35 2.042261 GGGCTCTGGTCCCCCTTA 59.958 66.667 0.00 0.00 37.81 2.69
35 36 3.829311 TTGGGCTCTGGTCCCCCTT 62.829 63.158 2.90 0.00 43.24 3.95
36 37 4.285790 TTGGGCTCTGGTCCCCCT 62.286 66.667 2.90 0.00 43.24 4.79
37 38 4.048470 GTTGGGCTCTGGTCCCCC 62.048 72.222 0.00 0.00 43.24 5.40
38 39 4.048470 GGTTGGGCTCTGGTCCCC 62.048 72.222 0.00 0.00 43.24 4.81
39 40 4.410400 CGGTTGGGCTCTGGTCCC 62.410 72.222 0.00 0.00 44.17 4.46
40 41 2.890766 TTCGGTTGGGCTCTGGTCC 61.891 63.158 0.00 0.00 37.81 4.46
41 42 1.671379 GTTCGGTTGGGCTCTGGTC 60.671 63.158 0.00 0.00 0.00 4.02
42 43 0.834687 TAGTTCGGTTGGGCTCTGGT 60.835 55.000 0.00 0.00 0.00 4.00
43 44 0.391263 GTAGTTCGGTTGGGCTCTGG 60.391 60.000 0.00 0.00 0.00 3.86
44 45 0.608640 AGTAGTTCGGTTGGGCTCTG 59.391 55.000 0.00 0.00 0.00 3.35
45 46 0.608640 CAGTAGTTCGGTTGGGCTCT 59.391 55.000 0.00 0.00 0.00 4.09
46 47 0.320697 ACAGTAGTTCGGTTGGGCTC 59.679 55.000 0.00 0.00 0.00 4.70
47 48 0.763035 AACAGTAGTTCGGTTGGGCT 59.237 50.000 0.00 0.00 33.57 5.19
48 49 1.154197 GAACAGTAGTTCGGTTGGGC 58.846 55.000 0.00 0.00 44.11 5.36
70 71 8.801715 TTAGCTAAATTTGCAAGAACTGAAAG 57.198 30.769 2.97 0.00 42.29 2.62
71 72 9.762933 ATTTAGCTAAATTTGCAAGAACTGAAA 57.237 25.926 23.22 0.00 32.28 2.69
77 78 9.019764 GCGATTATTTAGCTAAATTTGCAAGAA 57.980 29.630 31.10 19.66 37.16 2.52
78 79 8.405531 AGCGATTATTTAGCTAAATTTGCAAGA 58.594 29.630 31.10 13.00 39.74 3.02
79 80 8.566008 AGCGATTATTTAGCTAAATTTGCAAG 57.434 30.769 31.10 19.70 39.74 4.01
91 92 9.341899 CCAAAATATGGTTAGCGATTATTTAGC 57.658 33.333 0.00 0.00 44.85 3.09
114 115 9.607988 AGTGTATTTCATATCAATCGTAACCAA 57.392 29.630 0.00 0.00 0.00 3.67
120 121 9.817809 ACAACTAGTGTATTTCATATCAATCGT 57.182 29.630 0.00 0.00 39.29 3.73
127 128 9.745880 CCTTCGTACAACTAGTGTATTTCATAT 57.254 33.333 0.00 0.00 44.52 1.78
128 129 8.192774 CCCTTCGTACAACTAGTGTATTTCATA 58.807 37.037 0.00 0.00 44.52 2.15
129 130 7.039882 CCCTTCGTACAACTAGTGTATTTCAT 58.960 38.462 0.00 0.00 44.52 2.57
130 131 6.209192 TCCCTTCGTACAACTAGTGTATTTCA 59.791 38.462 0.00 0.00 44.52 2.69
131 132 6.529477 GTCCCTTCGTACAACTAGTGTATTTC 59.471 42.308 0.00 0.00 44.52 2.17
132 133 6.015180 TGTCCCTTCGTACAACTAGTGTATTT 60.015 38.462 0.00 0.00 44.52 1.40
133 134 5.477984 TGTCCCTTCGTACAACTAGTGTATT 59.522 40.000 0.00 0.00 44.52 1.89
134 135 5.012239 TGTCCCTTCGTACAACTAGTGTAT 58.988 41.667 0.00 0.00 44.52 2.29
135 136 4.397420 TGTCCCTTCGTACAACTAGTGTA 58.603 43.478 0.00 0.00 41.98 2.90
136 137 3.225104 TGTCCCTTCGTACAACTAGTGT 58.775 45.455 0.00 0.00 44.82 3.55
137 138 3.928727 TGTCCCTTCGTACAACTAGTG 57.071 47.619 0.00 0.00 0.00 2.74
138 139 4.084287 TGATGTCCCTTCGTACAACTAGT 58.916 43.478 0.00 0.00 0.00 2.57
139 140 4.713824 TGATGTCCCTTCGTACAACTAG 57.286 45.455 0.00 0.00 0.00 2.57
140 141 4.525487 ACTTGATGTCCCTTCGTACAACTA 59.475 41.667 0.00 0.00 0.00 2.24
141 142 3.323979 ACTTGATGTCCCTTCGTACAACT 59.676 43.478 0.00 0.00 0.00 3.16
142 143 3.432252 CACTTGATGTCCCTTCGTACAAC 59.568 47.826 0.00 0.00 0.00 3.32
143 144 3.070446 ACACTTGATGTCCCTTCGTACAA 59.930 43.478 0.00 0.00 36.54 2.41
144 145 2.631062 ACACTTGATGTCCCTTCGTACA 59.369 45.455 0.00 0.00 36.54 2.90
145 146 3.314541 ACACTTGATGTCCCTTCGTAC 57.685 47.619 0.00 0.00 36.54 3.67
156 157 6.820152 TGGTGAATGAGATTAGACACTTGATG 59.180 38.462 0.00 0.00 0.00 3.07
157 158 6.950842 TGGTGAATGAGATTAGACACTTGAT 58.049 36.000 0.00 0.00 0.00 2.57
158 159 6.358974 TGGTGAATGAGATTAGACACTTGA 57.641 37.500 0.00 0.00 0.00 3.02
159 160 6.093219 CCTTGGTGAATGAGATTAGACACTTG 59.907 42.308 0.00 0.00 0.00 3.16
160 161 6.013379 TCCTTGGTGAATGAGATTAGACACTT 60.013 38.462 0.00 0.00 0.00 3.16
161 162 5.485353 TCCTTGGTGAATGAGATTAGACACT 59.515 40.000 0.00 0.00 0.00 3.55
162 163 5.734720 TCCTTGGTGAATGAGATTAGACAC 58.265 41.667 0.00 0.00 0.00 3.67
163 164 5.104776 CCTCCTTGGTGAATGAGATTAGACA 60.105 44.000 0.00 0.00 0.00 3.41
164 165 5.363939 CCTCCTTGGTGAATGAGATTAGAC 58.636 45.833 0.00 0.00 0.00 2.59
165 166 4.141620 GCCTCCTTGGTGAATGAGATTAGA 60.142 45.833 0.00 0.00 38.35 2.10
166 167 4.133078 GCCTCCTTGGTGAATGAGATTAG 58.867 47.826 0.00 0.00 38.35 1.73
167 168 3.523157 TGCCTCCTTGGTGAATGAGATTA 59.477 43.478 0.00 0.00 38.35 1.75
168 169 2.309755 TGCCTCCTTGGTGAATGAGATT 59.690 45.455 0.00 0.00 38.35 2.40
169 170 1.918262 TGCCTCCTTGGTGAATGAGAT 59.082 47.619 0.00 0.00 38.35 2.75
170 171 1.361204 TGCCTCCTTGGTGAATGAGA 58.639 50.000 0.00 0.00 38.35 3.27
171 172 2.205022 TTGCCTCCTTGGTGAATGAG 57.795 50.000 0.00 0.00 38.35 2.90
172 173 2.673775 TTTGCCTCCTTGGTGAATGA 57.326 45.000 0.00 0.00 38.35 2.57
173 174 6.016777 GTCTATATTTGCCTCCTTGGTGAATG 60.017 42.308 0.00 0.00 38.35 2.67
174 175 6.064717 GTCTATATTTGCCTCCTTGGTGAAT 58.935 40.000 0.00 0.00 38.35 2.57
175 176 5.437060 GTCTATATTTGCCTCCTTGGTGAA 58.563 41.667 0.00 0.00 38.35 3.18
176 177 4.141482 GGTCTATATTTGCCTCCTTGGTGA 60.141 45.833 0.00 0.00 38.35 4.02
177 178 4.137543 GGTCTATATTTGCCTCCTTGGTG 58.862 47.826 0.00 0.00 38.35 4.17
178 179 4.047883 AGGTCTATATTTGCCTCCTTGGT 58.952 43.478 0.00 0.00 38.35 3.67
179 180 4.713792 AGGTCTATATTTGCCTCCTTGG 57.286 45.455 0.00 0.00 39.35 3.61
180 181 6.410540 GGATAGGTCTATATTTGCCTCCTTG 58.589 44.000 0.00 0.00 32.90 3.61
181 182 5.187967 CGGATAGGTCTATATTTGCCTCCTT 59.812 44.000 0.00 0.00 32.90 3.36
182 183 4.712337 CGGATAGGTCTATATTTGCCTCCT 59.288 45.833 0.00 0.00 32.90 3.69
183 184 4.466726 ACGGATAGGTCTATATTTGCCTCC 59.533 45.833 0.00 0.00 32.90 4.30
184 185 5.047235 ACACGGATAGGTCTATATTTGCCTC 60.047 44.000 0.00 0.00 32.90 4.70
185 186 4.838986 ACACGGATAGGTCTATATTTGCCT 59.161 41.667 0.00 0.00 35.28 4.75
186 187 5.047235 AGACACGGATAGGTCTATATTTGCC 60.047 44.000 0.00 0.00 42.30 4.52
187 188 6.026947 AGACACGGATAGGTCTATATTTGC 57.973 41.667 0.00 0.00 42.30 3.68
188 189 7.040340 ACAGAGACACGGATAGGTCTATATTTG 60.040 40.741 0.00 0.00 44.03 2.32
189 190 7.005296 ACAGAGACACGGATAGGTCTATATTT 58.995 38.462 0.00 0.00 44.03 1.40
190 191 6.544650 ACAGAGACACGGATAGGTCTATATT 58.455 40.000 0.00 0.00 44.03 1.28
191 192 6.129414 ACAGAGACACGGATAGGTCTATAT 57.871 41.667 0.00 0.00 44.03 0.86
192 193 5.512749 GGACAGAGACACGGATAGGTCTATA 60.513 48.000 0.00 0.00 44.03 1.31
193 194 4.391155 GACAGAGACACGGATAGGTCTAT 58.609 47.826 0.00 0.00 44.03 1.98
194 195 3.433314 GGACAGAGACACGGATAGGTCTA 60.433 52.174 0.00 0.00 44.03 2.59
195 196 2.645802 GACAGAGACACGGATAGGTCT 58.354 52.381 0.00 0.00 46.51 3.85
196 197 1.677052 GGACAGAGACACGGATAGGTC 59.323 57.143 0.00 0.00 0.00 3.85
197 198 1.285373 AGGACAGAGACACGGATAGGT 59.715 52.381 0.00 0.00 0.00 3.08
198 199 2.060050 AGGACAGAGACACGGATAGG 57.940 55.000 0.00 0.00 0.00 2.57
199 200 4.202030 GGTTAAGGACAGAGACACGGATAG 60.202 50.000 0.00 0.00 0.00 2.08
200 201 3.698040 GGTTAAGGACAGAGACACGGATA 59.302 47.826 0.00 0.00 0.00 2.59
201 202 2.496470 GGTTAAGGACAGAGACACGGAT 59.504 50.000 0.00 0.00 0.00 4.18
202 203 1.891150 GGTTAAGGACAGAGACACGGA 59.109 52.381 0.00 0.00 0.00 4.69
203 204 1.616865 TGGTTAAGGACAGAGACACGG 59.383 52.381 0.00 0.00 0.00 4.94
204 205 3.594603 ATGGTTAAGGACAGAGACACG 57.405 47.619 0.00 0.00 0.00 4.49
205 206 6.535508 GTGAATATGGTTAAGGACAGAGACAC 59.464 42.308 0.00 0.00 0.00 3.67
206 207 6.351881 GGTGAATATGGTTAAGGACAGAGACA 60.352 42.308 0.00 0.00 0.00 3.41
207 208 6.049790 GGTGAATATGGTTAAGGACAGAGAC 58.950 44.000 0.00 0.00 0.00 3.36
208 209 5.163447 CGGTGAATATGGTTAAGGACAGAGA 60.163 44.000 0.00 0.00 0.00 3.10
209 210 5.050490 CGGTGAATATGGTTAAGGACAGAG 58.950 45.833 0.00 0.00 0.00 3.35
210 211 4.682320 GCGGTGAATATGGTTAAGGACAGA 60.682 45.833 0.00 0.00 0.00 3.41
211 212 3.560068 GCGGTGAATATGGTTAAGGACAG 59.440 47.826 0.00 0.00 0.00 3.51
212 213 3.537580 GCGGTGAATATGGTTAAGGACA 58.462 45.455 0.00 0.00 0.00 4.02
213 214 2.876550 GGCGGTGAATATGGTTAAGGAC 59.123 50.000 0.00 0.00 0.00 3.85
214 215 2.506231 TGGCGGTGAATATGGTTAAGGA 59.494 45.455 0.00 0.00 0.00 3.36
215 216 2.616842 GTGGCGGTGAATATGGTTAAGG 59.383 50.000 0.00 0.00 0.00 2.69
216 217 3.541632 AGTGGCGGTGAATATGGTTAAG 58.458 45.455 0.00 0.00 0.00 1.85
217 218 3.637911 AGTGGCGGTGAATATGGTTAA 57.362 42.857 0.00 0.00 0.00 2.01
218 219 3.451540 TGTAGTGGCGGTGAATATGGTTA 59.548 43.478 0.00 0.00 0.00 2.85
219 220 2.237643 TGTAGTGGCGGTGAATATGGTT 59.762 45.455 0.00 0.00 0.00 3.67
220 221 1.834896 TGTAGTGGCGGTGAATATGGT 59.165 47.619 0.00 0.00 0.00 3.55
221 222 2.102420 TCTGTAGTGGCGGTGAATATGG 59.898 50.000 0.00 0.00 0.00 2.74
222 223 3.452755 TCTGTAGTGGCGGTGAATATG 57.547 47.619 0.00 0.00 0.00 1.78
223 224 4.503296 GGATTCTGTAGTGGCGGTGAATAT 60.503 45.833 0.00 0.00 0.00 1.28
224 225 3.181469 GGATTCTGTAGTGGCGGTGAATA 60.181 47.826 0.00 0.00 0.00 1.75
225 226 2.420129 GGATTCTGTAGTGGCGGTGAAT 60.420 50.000 0.00 0.00 0.00 2.57
226 227 1.066430 GGATTCTGTAGTGGCGGTGAA 60.066 52.381 0.00 0.00 0.00 3.18
227 228 0.535335 GGATTCTGTAGTGGCGGTGA 59.465 55.000 0.00 0.00 0.00 4.02
228 229 0.249120 TGGATTCTGTAGTGGCGGTG 59.751 55.000 0.00 0.00 0.00 4.94
229 230 1.204146 ATGGATTCTGTAGTGGCGGT 58.796 50.000 0.00 0.00 0.00 5.68
230 231 2.332063 AATGGATTCTGTAGTGGCGG 57.668 50.000 0.00 0.00 0.00 6.13
231 232 2.223340 GCAAATGGATTCTGTAGTGGCG 60.223 50.000 0.00 0.00 0.00 5.69
232 233 2.754552 TGCAAATGGATTCTGTAGTGGC 59.245 45.455 0.00 0.00 0.00 5.01
233 234 3.758023 TGTGCAAATGGATTCTGTAGTGG 59.242 43.478 0.00 0.00 0.00 4.00
234 235 4.216042 TGTGTGCAAATGGATTCTGTAGTG 59.784 41.667 0.00 0.00 0.00 2.74
235 236 4.397420 TGTGTGCAAATGGATTCTGTAGT 58.603 39.130 0.00 0.00 0.00 2.73
236 237 5.375417 TTGTGTGCAAATGGATTCTGTAG 57.625 39.130 0.00 0.00 0.00 2.74
237 238 5.781210 TTTGTGTGCAAATGGATTCTGTA 57.219 34.783 0.00 0.00 39.43 2.74
238 239 4.669206 TTTGTGTGCAAATGGATTCTGT 57.331 36.364 0.00 0.00 39.43 3.41
249 250 1.890876 AGCTACCGATTTGTGTGCAA 58.109 45.000 0.00 0.00 0.00 4.08
250 251 1.804151 GAAGCTACCGATTTGTGTGCA 59.196 47.619 0.00 0.00 0.00 4.57
251 252 1.201921 CGAAGCTACCGATTTGTGTGC 60.202 52.381 2.62 0.00 0.00 4.57
252 253 2.333926 TCGAAGCTACCGATTTGTGTG 58.666 47.619 6.99 0.00 0.00 3.82
253 254 2.736144 TCGAAGCTACCGATTTGTGT 57.264 45.000 6.99 0.00 0.00 3.72
254 255 2.216488 CGATCGAAGCTACCGATTTGTG 59.784 50.000 20.30 10.48 45.49 3.33
255 256 2.460918 CGATCGAAGCTACCGATTTGT 58.539 47.619 20.30 4.24 45.49 2.83
256 257 1.190323 GCGATCGAAGCTACCGATTTG 59.810 52.381 21.57 17.07 45.49 2.32
257 258 1.067212 AGCGATCGAAGCTACCGATTT 59.933 47.619 21.57 10.14 45.49 2.17
258 259 0.669077 AGCGATCGAAGCTACCGATT 59.331 50.000 21.57 6.78 45.49 3.34
260 261 1.355563 CAGCGATCGAAGCTACCGA 59.644 57.895 21.57 12.56 44.06 4.69
261 262 1.658717 CCAGCGATCGAAGCTACCG 60.659 63.158 21.57 6.74 44.06 4.02
262 263 0.315568 ATCCAGCGATCGAAGCTACC 59.684 55.000 21.57 0.00 44.06 3.18
263 264 2.857618 CTATCCAGCGATCGAAGCTAC 58.142 52.381 21.57 0.00 44.06 3.58
264 265 1.200252 GCTATCCAGCGATCGAAGCTA 59.800 52.381 21.57 5.07 44.06 3.32
266 267 2.439964 GCTATCCAGCGATCGAAGC 58.560 57.895 21.57 12.51 38.22 3.86
275 276 8.152086 AGAGGGTATTTCTCTTGCTATCCAGC 62.152 46.154 0.00 0.00 38.32 4.85
276 277 5.306678 AGAGGGTATTTCTCTTGCTATCCAG 59.693 44.000 0.00 0.00 38.32 3.86
277 278 5.219739 AGAGGGTATTTCTCTTGCTATCCA 58.780 41.667 0.00 0.00 38.32 3.41
278 279 5.816955 AGAGGGTATTTCTCTTGCTATCC 57.183 43.478 0.00 0.00 38.32 2.59
279 280 6.816140 GCATAGAGGGTATTTCTCTTGCTATC 59.184 42.308 14.66 0.00 41.37 2.08
280 281 6.270927 TGCATAGAGGGTATTTCTCTTGCTAT 59.729 38.462 18.78 0.00 41.00 2.97
281 282 5.602561 TGCATAGAGGGTATTTCTCTTGCTA 59.397 40.000 18.78 0.00 41.00 3.49
282 283 4.410228 TGCATAGAGGGTATTTCTCTTGCT 59.590 41.667 18.78 0.00 41.00 3.91
283 284 4.708177 TGCATAGAGGGTATTTCTCTTGC 58.292 43.478 14.87 14.87 41.37 4.01
284 285 5.238214 GCTTGCATAGAGGGTATTTCTCTTG 59.762 44.000 0.00 0.00 41.37 3.02
285 286 5.104360 TGCTTGCATAGAGGGTATTTCTCTT 60.104 40.000 0.00 0.00 41.37 2.85
286 287 4.410228 TGCTTGCATAGAGGGTATTTCTCT 59.590 41.667 0.00 0.00 43.31 3.10
287 288 4.513318 GTGCTTGCATAGAGGGTATTTCTC 59.487 45.833 0.00 0.00 0.00 2.87
288 289 4.080356 TGTGCTTGCATAGAGGGTATTTCT 60.080 41.667 0.00 0.00 0.00 2.52
289 290 4.199310 TGTGCTTGCATAGAGGGTATTTC 58.801 43.478 0.00 0.00 0.00 2.17
290 291 4.235079 TGTGCTTGCATAGAGGGTATTT 57.765 40.909 0.00 0.00 0.00 1.40
291 292 3.931907 TGTGCTTGCATAGAGGGTATT 57.068 42.857 0.00 0.00 0.00 1.89
292 293 4.594920 ACTATGTGCTTGCATAGAGGGTAT 59.405 41.667 21.48 0.00 46.81 2.73
293 294 3.967326 ACTATGTGCTTGCATAGAGGGTA 59.033 43.478 21.48 0.00 46.81 3.69
294 295 2.774234 ACTATGTGCTTGCATAGAGGGT 59.226 45.455 21.48 0.00 46.81 4.34
295 296 3.482156 ACTATGTGCTTGCATAGAGGG 57.518 47.619 21.48 0.00 46.81 4.30
296 297 6.591834 GGTATAACTATGTGCTTGCATAGAGG 59.408 42.308 21.48 4.05 46.81 3.69
297 298 6.309009 CGGTATAACTATGTGCTTGCATAGAG 59.691 42.308 21.48 11.39 46.81 2.43
298 299 6.156519 CGGTATAACTATGTGCTTGCATAGA 58.843 40.000 21.48 0.00 46.81 1.98
300 301 5.011227 TCCGGTATAACTATGTGCTTGCATA 59.989 40.000 0.00 0.00 0.00 3.14
301 302 4.065088 CCGGTATAACTATGTGCTTGCAT 58.935 43.478 0.00 0.00 0.00 3.96
302 303 3.133183 TCCGGTATAACTATGTGCTTGCA 59.867 43.478 0.00 0.00 0.00 4.08
303 304 3.724374 TCCGGTATAACTATGTGCTTGC 58.276 45.455 0.00 0.00 0.00 4.01
304 305 5.405571 GTCATCCGGTATAACTATGTGCTTG 59.594 44.000 0.00 0.00 0.00 4.01
305 306 5.510861 GGTCATCCGGTATAACTATGTGCTT 60.511 44.000 0.00 0.00 0.00 3.91
306 307 4.021368 GGTCATCCGGTATAACTATGTGCT 60.021 45.833 0.00 0.00 0.00 4.40
307 308 4.243270 GGTCATCCGGTATAACTATGTGC 58.757 47.826 0.00 0.00 0.00 4.57
308 309 4.817517 GGGTCATCCGGTATAACTATGTG 58.182 47.826 0.00 0.00 33.83 3.21
338 339 0.530288 GAGCATCTCTAGCGGATCCC 59.470 60.000 6.06 0.00 37.01 3.85
395 396 9.623000 TGCTAAGATTGTCATACAGTAGTACTA 57.377 33.333 1.57 0.00 31.96 1.82
396 397 8.407064 GTGCTAAGATTGTCATACAGTAGTACT 58.593 37.037 0.00 0.00 31.96 2.73
397 398 8.188799 TGTGCTAAGATTGTCATACAGTAGTAC 58.811 37.037 0.00 0.00 31.96 2.73
398 399 8.288689 TGTGCTAAGATTGTCATACAGTAGTA 57.711 34.615 0.00 0.00 34.10 1.82
399 400 7.170393 TGTGCTAAGATTGTCATACAGTAGT 57.830 36.000 0.00 0.00 0.00 2.73
400 401 8.479313 TTTGTGCTAAGATTGTCATACAGTAG 57.521 34.615 0.00 0.00 0.00 2.57
401 402 9.448438 AATTTGTGCTAAGATTGTCATACAGTA 57.552 29.630 0.00 0.00 0.00 2.74
402 403 7.928307 ATTTGTGCTAAGATTGTCATACAGT 57.072 32.000 0.00 0.00 0.00 3.55
403 404 9.282247 GAAATTTGTGCTAAGATTGTCATACAG 57.718 33.333 0.00 0.00 0.00 2.74
404 405 8.791675 TGAAATTTGTGCTAAGATTGTCATACA 58.208 29.630 0.00 0.00 0.00 2.29
405 406 9.624697 TTGAAATTTGTGCTAAGATTGTCATAC 57.375 29.630 0.00 0.00 0.00 2.39
407 408 9.715121 ATTTGAAATTTGTGCTAAGATTGTCAT 57.285 25.926 0.00 0.00 0.00 3.06
408 409 8.980610 CATTTGAAATTTGTGCTAAGATTGTCA 58.019 29.630 0.00 0.00 0.00 3.58
409 410 9.195411 TCATTTGAAATTTGTGCTAAGATTGTC 57.805 29.630 0.00 0.00 0.00 3.18
410 411 8.981647 GTCATTTGAAATTTGTGCTAAGATTGT 58.018 29.630 0.00 0.00 0.00 2.71
411 412 8.437742 GGTCATTTGAAATTTGTGCTAAGATTG 58.562 33.333 0.00 0.00 0.00 2.67
412 413 7.603784 GGGTCATTTGAAATTTGTGCTAAGATT 59.396 33.333 0.00 0.00 0.00 2.40
413 414 7.038799 AGGGTCATTTGAAATTTGTGCTAAGAT 60.039 33.333 0.00 0.00 0.00 2.40
414 415 6.267471 AGGGTCATTTGAAATTTGTGCTAAGA 59.733 34.615 0.00 0.00 0.00 2.10
415 416 6.366877 CAGGGTCATTTGAAATTTGTGCTAAG 59.633 38.462 0.00 0.00 0.00 2.18
416 417 6.041409 TCAGGGTCATTTGAAATTTGTGCTAA 59.959 34.615 0.00 0.00 0.00 3.09
417 418 5.538053 TCAGGGTCATTTGAAATTTGTGCTA 59.462 36.000 0.00 0.00 0.00 3.49
418 419 4.344679 TCAGGGTCATTTGAAATTTGTGCT 59.655 37.500 0.00 0.00 0.00 4.40
419 420 4.630111 TCAGGGTCATTTGAAATTTGTGC 58.370 39.130 0.00 0.00 0.00 4.57
420 421 6.018832 GTGTTCAGGGTCATTTGAAATTTGTG 60.019 38.462 0.00 0.00 35.29 3.33
421 422 6.048509 GTGTTCAGGGTCATTTGAAATTTGT 58.951 36.000 0.00 0.00 35.29 2.83
422 423 6.282930 AGTGTTCAGGGTCATTTGAAATTTG 58.717 36.000 0.00 0.00 35.29 2.32
423 424 6.484364 AGTGTTCAGGGTCATTTGAAATTT 57.516 33.333 0.00 0.00 35.29 1.82
424 425 6.209391 CCTAGTGTTCAGGGTCATTTGAAATT 59.791 38.462 0.00 0.00 35.29 1.82
425 426 5.711976 CCTAGTGTTCAGGGTCATTTGAAAT 59.288 40.000 0.00 0.00 35.29 2.17
426 427 5.070001 CCTAGTGTTCAGGGTCATTTGAAA 58.930 41.667 0.00 0.00 35.29 2.69
427 428 4.349636 TCCTAGTGTTCAGGGTCATTTGAA 59.650 41.667 0.00 0.00 33.66 2.69
428 429 3.907474 TCCTAGTGTTCAGGGTCATTTGA 59.093 43.478 0.00 0.00 33.66 2.69
429 430 4.256920 CTCCTAGTGTTCAGGGTCATTTG 58.743 47.826 0.00 0.00 33.66 2.32
430 431 3.910627 ACTCCTAGTGTTCAGGGTCATTT 59.089 43.478 0.00 0.00 33.66 2.32
431 432 3.521727 ACTCCTAGTGTTCAGGGTCATT 58.478 45.455 0.00 0.00 33.66 2.57
432 433 3.191888 ACTCCTAGTGTTCAGGGTCAT 57.808 47.619 0.00 0.00 33.66 3.06
433 434 2.696526 ACTCCTAGTGTTCAGGGTCA 57.303 50.000 0.00 0.00 33.66 4.02
434 435 3.699413 ACTACTCCTAGTGTTCAGGGTC 58.301 50.000 0.00 0.00 31.46 4.46
435 436 3.829728 ACTACTCCTAGTGTTCAGGGT 57.170 47.619 0.00 0.00 31.46 4.34
436 437 4.857679 AGTACTACTCCTAGTGTTCAGGG 58.142 47.826 0.00 0.00 34.79 4.45
437 438 5.528320 GCTAGTACTACTCCTAGTGTTCAGG 59.472 48.000 0.00 0.00 34.79 3.86
438 439 6.114089 TGCTAGTACTACTCCTAGTGTTCAG 58.886 44.000 0.00 0.00 34.79 3.02
439 440 6.058553 TGCTAGTACTACTCCTAGTGTTCA 57.941 41.667 0.00 0.00 34.79 3.18
440 441 6.766944 TGATGCTAGTACTACTCCTAGTGTTC 59.233 42.308 0.00 0.00 34.79 3.18
441 442 6.660800 TGATGCTAGTACTACTCCTAGTGTT 58.339 40.000 0.00 0.00 34.79 3.32
442 443 6.249911 TGATGCTAGTACTACTCCTAGTGT 57.750 41.667 0.00 0.00 34.79 3.55
443 444 8.098286 ACTATGATGCTAGTACTACTCCTAGTG 58.902 40.741 0.00 0.00 34.79 2.74
444 445 8.209802 ACTATGATGCTAGTACTACTCCTAGT 57.790 38.462 0.00 6.53 37.04 2.57
445 446 9.811995 CTACTATGATGCTAGTACTACTCCTAG 57.188 40.741 0.00 6.00 33.96 3.02
446 447 8.259411 GCTACTATGATGCTAGTACTACTCCTA 58.741 40.741 0.00 0.00 33.96 2.94
447 448 7.037873 AGCTACTATGATGCTAGTACTACTCCT 60.038 40.741 0.00 0.00 35.05 3.69
448 449 7.065324 CAGCTACTATGATGCTAGTACTACTCC 59.935 44.444 0.00 0.00 35.05 3.85
449 450 7.604927 ACAGCTACTATGATGCTAGTACTACTC 59.395 40.741 0.00 0.00 35.05 2.59
450 451 7.455058 ACAGCTACTATGATGCTAGTACTACT 58.545 38.462 0.00 0.00 35.05 2.57
451 452 7.675962 ACAGCTACTATGATGCTAGTACTAC 57.324 40.000 0.00 0.00 35.05 2.73
452 453 9.961264 AATACAGCTACTATGATGCTAGTACTA 57.039 33.333 1.89 1.89 35.05 1.82
453 454 8.735315 CAATACAGCTACTATGATGCTAGTACT 58.265 37.037 0.00 0.00 35.05 2.73
454 455 7.486551 GCAATACAGCTACTATGATGCTAGTAC 59.513 40.741 0.00 0.00 35.05 2.73
455 456 7.363007 GGCAATACAGCTACTATGATGCTAGTA 60.363 40.741 0.00 0.00 35.05 1.82
456 457 6.393990 GCAATACAGCTACTATGATGCTAGT 58.606 40.000 0.00 0.00 35.05 2.57
457 458 5.809562 GGCAATACAGCTACTATGATGCTAG 59.190 44.000 0.00 0.00 35.05 3.42
458 459 5.481824 AGGCAATACAGCTACTATGATGCTA 59.518 40.000 0.00 0.00 35.05 3.49
459 460 4.285517 AGGCAATACAGCTACTATGATGCT 59.714 41.667 0.00 0.00 37.56 3.79
460 461 4.573900 AGGCAATACAGCTACTATGATGC 58.426 43.478 0.00 0.00 34.17 3.91
461 462 6.462500 AGAAGGCAATACAGCTACTATGATG 58.538 40.000 0.00 0.00 34.17 3.07
462 463 6.678568 AGAAGGCAATACAGCTACTATGAT 57.321 37.500 0.00 0.00 34.17 2.45
463 464 6.485830 AAGAAGGCAATACAGCTACTATGA 57.514 37.500 0.00 0.00 34.17 2.15
464 465 5.403766 CGAAGAAGGCAATACAGCTACTATG 59.596 44.000 0.00 0.00 34.17 2.23
465 466 5.069251 ACGAAGAAGGCAATACAGCTACTAT 59.931 40.000 0.00 0.00 34.17 2.12
466 467 4.401519 ACGAAGAAGGCAATACAGCTACTA 59.598 41.667 0.00 0.00 34.17 1.82
467 468 3.195825 ACGAAGAAGGCAATACAGCTACT 59.804 43.478 0.00 0.00 34.17 2.57
468 469 3.307242 CACGAAGAAGGCAATACAGCTAC 59.693 47.826 0.00 0.00 34.17 3.58
469 470 3.521560 CACGAAGAAGGCAATACAGCTA 58.478 45.455 0.00 0.00 34.17 3.32
470 471 2.350522 CACGAAGAAGGCAATACAGCT 58.649 47.619 0.00 0.00 34.17 4.24
471 472 1.398390 CCACGAAGAAGGCAATACAGC 59.602 52.381 0.00 0.00 0.00 4.40
472 473 2.932614 CTCCACGAAGAAGGCAATACAG 59.067 50.000 0.00 0.00 0.00 2.74
473 474 2.935238 GCTCCACGAAGAAGGCAATACA 60.935 50.000 0.00 0.00 0.00 2.29
474 475 1.666189 GCTCCACGAAGAAGGCAATAC 59.334 52.381 0.00 0.00 0.00 1.89
475 476 2.024176 GCTCCACGAAGAAGGCAATA 57.976 50.000 0.00 0.00 0.00 1.90
476 477 2.859992 GCTCCACGAAGAAGGCAAT 58.140 52.632 0.00 0.00 0.00 3.56
477 478 4.379174 GCTCCACGAAGAAGGCAA 57.621 55.556 0.00 0.00 0.00 4.52
517 518 3.559384 CCGCCTTAATTAATCCTCCCTCC 60.559 52.174 0.00 0.00 0.00 4.30
524 525 0.240145 GCCGCCGCCTTAATTAATCC 59.760 55.000 0.00 0.00 0.00 3.01
526 527 2.551032 GTTAGCCGCCGCCTTAATTAAT 59.449 45.455 0.00 0.00 34.57 1.40
527 528 1.941975 GTTAGCCGCCGCCTTAATTAA 59.058 47.619 0.00 0.00 34.57 1.40
528 529 1.585297 GTTAGCCGCCGCCTTAATTA 58.415 50.000 0.00 0.00 34.57 1.40
529 530 1.433837 CGTTAGCCGCCGCCTTAATT 61.434 55.000 0.00 0.00 34.57 1.40
530 531 1.885850 CGTTAGCCGCCGCCTTAAT 60.886 57.895 0.00 0.00 34.57 1.40
531 532 2.509786 CGTTAGCCGCCGCCTTAA 60.510 61.111 0.00 0.00 34.57 1.85
532 533 4.517815 CCGTTAGCCGCCGCCTTA 62.518 66.667 0.00 0.00 34.57 2.69
539 540 2.801483 TTAACCACCCCGTTAGCCGC 62.801 60.000 0.00 0.00 34.38 6.53
540 541 0.107557 ATTAACCACCCCGTTAGCCG 60.108 55.000 0.00 0.00 30.20 5.52
541 542 2.133281 AATTAACCACCCCGTTAGCC 57.867 50.000 0.00 0.00 30.20 3.93
546 547 1.679640 CGCCTTAATTAACCACCCCGT 60.680 52.381 0.00 0.00 0.00 5.28
551 552 2.416296 GGTTGCCGCCTTAATTAACCAC 60.416 50.000 0.00 0.00 37.93 4.16
556 557 2.428890 CCATTGGTTGCCGCCTTAATTA 59.571 45.455 0.00 0.00 0.00 1.40
655 669 2.681097 CGTTTGGGGGAGAAGAATCCTC 60.681 54.545 0.00 0.00 39.34 3.71
665 679 1.665442 CTTTTGGCGTTTGGGGGAG 59.335 57.895 0.00 0.00 0.00 4.30
676 690 1.862827 CTGCAGTTTGAAGCTTTTGGC 59.137 47.619 5.25 0.00 42.19 4.52
684 699 1.151668 CGGAGGACTGCAGTTTGAAG 58.848 55.000 22.65 9.36 0.00 3.02
925 960 1.133025 CAATGGATTGAGCGGTTGGTC 59.867 52.381 0.00 0.00 40.14 4.02
1277 1328 2.437359 CCTGCTCCGGCTTCCTTG 60.437 66.667 0.00 0.00 39.59 3.61
1278 1329 2.930562 ACCTGCTCCGGCTTCCTT 60.931 61.111 0.00 0.00 39.59 3.36
1279 1330 3.710722 CACCTGCTCCGGCTTCCT 61.711 66.667 0.00 0.00 39.59 3.36
1288 1339 1.673665 CCAACCTCTGCACCTGCTC 60.674 63.158 0.00 0.00 42.66 4.26
1292 1343 2.069165 GAACCCCAACCTCTGCACCT 62.069 60.000 0.00 0.00 0.00 4.00
1415 1466 3.739401 AAAAGGAACAGGGGTGATAGG 57.261 47.619 0.00 0.00 0.00 2.57
1438 1517 6.878923 TGACCAGTCTCAATGTAATAACCTTG 59.121 38.462 0.00 0.00 33.83 3.61
1449 1531 4.576053 TGAAAACAGTGACCAGTCTCAATG 59.424 41.667 0.00 0.00 41.12 2.82
1546 1628 6.357579 AGCCAAATCCTATCAGAGTATCAG 57.642 41.667 0.00 0.00 37.82 2.90
1547 1629 8.316946 CAATAGCCAAATCCTATCAGAGTATCA 58.683 37.037 0.00 0.00 37.82 2.15
1548 1630 7.279758 GCAATAGCCAAATCCTATCAGAGTATC 59.720 40.741 0.00 0.00 33.58 2.24
1549 1631 7.108847 GCAATAGCCAAATCCTATCAGAGTAT 58.891 38.462 0.00 0.00 33.58 2.12
1550 1632 6.043127 TGCAATAGCCAAATCCTATCAGAGTA 59.957 38.462 0.00 0.00 41.13 2.59
1551 1633 5.163163 TGCAATAGCCAAATCCTATCAGAGT 60.163 40.000 0.00 0.00 41.13 3.24
1552 1634 5.311265 TGCAATAGCCAAATCCTATCAGAG 58.689 41.667 0.00 0.00 41.13 3.35
1553 1635 5.308976 TGCAATAGCCAAATCCTATCAGA 57.691 39.130 0.00 0.00 41.13 3.27
1576 1658 6.489700 TCTGGTTGAATGTTTGATTCTAGCAA 59.510 34.615 10.41 0.00 39.38 3.91
1595 1677 0.329596 GAGGGAGGTGCAATCTGGTT 59.670 55.000 0.00 0.00 0.00 3.67
1597 1679 0.549950 ATGAGGGAGGTGCAATCTGG 59.450 55.000 0.00 0.00 0.00 3.86
1650 1732 0.249120 CAACACAGGGATAGCGGTGA 59.751 55.000 0.00 0.00 35.33 4.02
1653 1735 2.872245 CAATACAACACAGGGATAGCGG 59.128 50.000 0.00 0.00 0.00 5.52
1655 1737 3.065371 GCACAATACAACACAGGGATAGC 59.935 47.826 0.00 0.00 0.00 2.97
1683 1765 6.150140 GGTGCAGAATCAAACTTAGAAGACAT 59.850 38.462 0.00 0.00 0.00 3.06
1686 1768 5.869579 AGGTGCAGAATCAAACTTAGAAGA 58.130 37.500 0.00 0.00 0.00 2.87
1714 1796 1.294138 GGCAGTGCAATGTGGCATT 59.706 52.632 18.61 0.00 46.92 3.56
1912 1997 7.055667 TGTATCTTCTGAGTTGTCTTGTTCT 57.944 36.000 0.00 0.00 0.00 3.01
1965 2050 5.072741 CCTCCTCCAGAAGAATTGTTTTCA 58.927 41.667 0.00 0.00 0.00 2.69
1966 2051 5.073428 ACCTCCTCCAGAAGAATTGTTTTC 58.927 41.667 0.00 0.00 0.00 2.29
2014 2099 1.705186 TCTCCTAAAGCAGTTGCCCTT 59.295 47.619 0.00 0.00 43.38 3.95
2049 2134 4.922206 AGCTTCAAGGGTACATTGATTCA 58.078 39.130 12.05 0.09 36.60 2.57
2050 2135 5.644644 CAAGCTTCAAGGGTACATTGATTC 58.355 41.667 12.05 8.09 36.60 2.52
2054 2139 2.557924 TGCAAGCTTCAAGGGTACATTG 59.442 45.455 0.00 0.00 0.00 2.82
2055 2140 2.821969 CTGCAAGCTTCAAGGGTACATT 59.178 45.455 0.00 0.00 0.00 2.71
2057 2142 1.545428 CCTGCAAGCTTCAAGGGTACA 60.545 52.381 14.00 0.00 0.00 2.90
2150 2235 7.772757 CAGCTCCTCTACTTCCTTAATCAAAAT 59.227 37.037 0.00 0.00 0.00 1.82
2158 2243 5.194473 TCTTCAGCTCCTCTACTTCCTTA 57.806 43.478 0.00 0.00 0.00 2.69
2189 2274 5.344743 TCTATCAAACTAACCTGCTCCAG 57.655 43.478 0.00 0.00 0.00 3.86
2545 2654 2.897969 TGACTGGTCTAGTTTGGACTCC 59.102 50.000 2.38 0.00 40.53 3.85
2759 2868 3.941483 AGGTGGTTCGCAAAGAATATCAG 59.059 43.478 0.00 0.00 41.49 2.90
2763 2872 6.646267 ACTAATAGGTGGTTCGCAAAGAATA 58.354 36.000 0.00 0.00 41.49 1.75
2834 2955 4.508861 AGAAATGAACATGTTGCAAAGCAC 59.491 37.500 17.58 0.00 38.71 4.40
2927 3048 6.095580 TGTGTGAGCCTTTACAAACAACATAA 59.904 34.615 0.00 0.00 32.30 1.90
2938 3059 7.593825 ACATAATTTTCTGTGTGAGCCTTTAC 58.406 34.615 0.00 0.00 0.00 2.01
3032 3180 2.643551 AGGAACTCCCATAATGCAACG 58.356 47.619 0.00 0.00 37.41 4.10
3057 3205 7.494298 TGCTGTAAAGATATTCTCATGCGTAAA 59.506 33.333 0.00 0.00 0.00 2.01
3355 3503 7.283127 AGTGCTCAGAAAGAAAAATAAGTGACA 59.717 33.333 0.00 0.00 0.00 3.58
3392 3540 9.449719 GAGTAATTTCACCTTAGGAGAAATGAA 57.550 33.333 28.23 19.78 46.60 2.57
3497 3645 1.839994 TTCCCTAGAGGATGGCACAAG 59.160 52.381 0.00 0.00 46.94 3.16
3826 3974 2.705658 TGTGTGGAAGAGAATGTGAGGT 59.294 45.455 0.00 0.00 0.00 3.85
3907 4055 3.257127 AGAGGAGTTGACTCAACAGCTAC 59.743 47.826 21.39 4.54 45.66 3.58
3941 4089 2.183046 GCTCACCAGGCTCGTCTC 59.817 66.667 0.00 0.00 0.00 3.36
3993 4141 3.791245 CTTTGCCATCTCTAGACCTGAC 58.209 50.000 0.00 0.00 0.00 3.51
4031 4179 3.677424 CGAGTTCTCTGACCAGAAATCCC 60.677 52.174 1.08 0.00 42.13 3.85
4153 4403 2.032620 AGTGTAGTCCACCGGATCATC 58.967 52.381 9.46 0.00 45.74 2.92
4186 4439 2.704572 GCTTCTAAGCCTCTTCAGCAA 58.295 47.619 3.22 0.00 46.20 3.91
4187 4440 2.393271 GCTTCTAAGCCTCTTCAGCA 57.607 50.000 3.22 0.00 46.20 4.41
4200 4453 2.753452 CTCGTAGTGGTTCCTGCTTCTA 59.247 50.000 0.00 0.00 0.00 2.10
4244 4497 2.842496 TGCTCAATGGACCAGAATCTCT 59.158 45.455 0.00 0.00 0.00 3.10
4295 4548 3.164268 TGCATATGAAACAACTTGGCCT 58.836 40.909 6.97 0.00 0.00 5.19
4300 4553 7.066284 GTCTATCCACTGCATATGAAACAACTT 59.934 37.037 6.97 0.00 0.00 2.66
4310 4563 3.580458 GTCCCAGTCTATCCACTGCATAT 59.420 47.826 0.00 0.00 42.29 1.78
4360 4613 1.674221 GGCACATCTCTGTCTGACACC 60.674 57.143 6.36 0.14 31.62 4.16
4438 4691 1.878953 ACTGTGGAGTAAAACTGCCG 58.121 50.000 0.00 0.00 35.52 5.69
4470 4723 7.445121 CCATCCAAGTAATAGAGCTATTGTCA 58.555 38.462 11.91 0.00 36.52 3.58
4659 4912 2.165357 TGCTAGCCAATGGAGAGAGA 57.835 50.000 13.29 0.00 0.00 3.10
4720 4973 2.000447 GTTGTGTCCGCAGATACTTCC 59.000 52.381 0.00 0.00 35.30 3.46
4721 4974 2.668457 CAGTTGTGTCCGCAGATACTTC 59.332 50.000 0.00 0.00 35.30 3.01
4722 4975 2.612972 CCAGTTGTGTCCGCAGATACTT 60.613 50.000 0.00 0.00 35.30 2.24
4725 4978 1.262417 TCCAGTTGTGTCCGCAGATA 58.738 50.000 0.00 0.00 0.00 1.98
4727 4980 0.531974 GTTCCAGTTGTGTCCGCAGA 60.532 55.000 0.00 0.00 0.00 4.26
4728 4981 1.507141 GGTTCCAGTTGTGTCCGCAG 61.507 60.000 0.00 0.00 0.00 5.18
4729 4982 1.525077 GGTTCCAGTTGTGTCCGCA 60.525 57.895 0.00 0.00 0.00 5.69
4730 4983 1.227853 AGGTTCCAGTTGTGTCCGC 60.228 57.895 0.00 0.00 0.00 5.54
4735 4994 1.343465 ACGTAGGAGGTTCCAGTTGTG 59.657 52.381 0.00 0.00 39.61 3.33
4803 5062 8.045507 AGATCTGAAATAAGCAACTCAATCTCA 58.954 33.333 0.00 0.00 0.00 3.27
4810 5069 6.019961 CGACTGAGATCTGAAATAAGCAACTC 60.020 42.308 0.00 0.00 0.00 3.01
4829 5088 1.961394 ACAAGAGGTTAGTGCGACTGA 59.039 47.619 0.00 0.00 0.00 3.41
4921 5213 2.746375 CGGGCCTGGGCTTGTAGAT 61.746 63.158 20.47 0.00 41.60 1.98
4922 5214 3.399181 CGGGCCTGGGCTTGTAGA 61.399 66.667 20.47 0.00 41.60 2.59
5202 5494 1.664321 GCTCAGGAAATGCAGCTGGG 61.664 60.000 17.12 0.00 32.54 4.45
5321 5613 1.670811 GGACAGCACATAAACCCATCG 59.329 52.381 0.00 0.00 0.00 3.84
6105 6419 3.367703 CCAGATCAAATCAGGCACCAAAC 60.368 47.826 0.00 0.00 0.00 2.93
6190 6504 3.314080 CAGCAACCGGTTAGAAACTCAAA 59.686 43.478 21.79 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.