Multiple sequence alignment - TraesCS5D01G444400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G444400 chr5D 100.000 2949 0 0 1 2949 495368277 495365329 0.000000e+00 5446.0
1 TraesCS5D01G444400 chr5D 87.830 682 40 16 1008 1657 495344656 495343986 0.000000e+00 760.0
2 TraesCS5D01G444400 chr5D 96.314 407 10 3 2155 2557 256182882 256182477 0.000000e+00 664.0
3 TraesCS5D01G444400 chr5D 90.979 388 20 7 1699 2079 495343983 495343604 2.620000e-140 508.0
4 TraesCS5D01G444400 chr5D 89.963 269 18 3 2681 2949 495343430 495343171 3.640000e-89 339.0
5 TraesCS5D01G444400 chr5D 76.358 313 52 18 186 491 187143763 187143466 6.590000e-32 148.0
6 TraesCS5D01G444400 chr5A 85.604 1688 166 43 1 1657 619472727 619471086 0.000000e+00 1700.0
7 TraesCS5D01G444400 chr5A 86.304 1066 81 31 671 1677 619469011 619467952 0.000000e+00 1099.0
8 TraesCS5D01G444400 chr5A 95.098 408 12 6 2155 2555 74670730 74671136 1.150000e-178 636.0
9 TraesCS5D01G444400 chr5A 87.500 520 21 16 1668 2153 619467898 619467389 7.140000e-156 560.0
10 TraesCS5D01G444400 chr5A 92.564 390 25 3 2558 2947 619467382 619466997 9.230000e-155 556.0
11 TraesCS5D01G444400 chr5A 92.412 369 18 3 1699 2064 619471083 619470722 4.360000e-143 518.0
12 TraesCS5D01G444400 chr5A 77.037 405 62 19 421 803 459744324 459743929 1.390000e-48 204.0
13 TraesCS5D01G444400 chr3D 85.225 1692 167 47 1 1657 438572234 438570591 0.000000e+00 1663.0
14 TraesCS5D01G444400 chr3D 97.052 407 8 1 2155 2557 373599404 373599810 0.000000e+00 682.0
15 TraesCS5D01G444400 chr3D 88.601 386 25 5 1699 2079 438570588 438570217 4.480000e-123 451.0
16 TraesCS5D01G444400 chr3D 75.920 598 104 32 209 786 607972273 607972850 1.350000e-68 270.0
17 TraesCS5D01G444400 chr3D 95.833 96 3 1 2855 2949 438570173 438570078 1.420000e-33 154.0
18 TraesCS5D01G444400 chr5B 88.585 841 60 18 865 1669 612000713 611999873 0.000000e+00 989.0
19 TraesCS5D01G444400 chr5B 86.714 843 68 26 1 833 612001519 612000711 0.000000e+00 896.0
20 TraesCS5D01G444400 chr5B 86.639 479 17 8 1701 2153 611999880 611999423 1.230000e-133 486.0
21 TraesCS5D01G444400 chr5B 94.444 198 8 2 2752 2949 611998807 611998613 4.780000e-78 302.0
22 TraesCS5D01G444400 chr5B 90.769 195 9 4 2558 2750 611999416 611999229 4.880000e-63 252.0
23 TraesCS5D01G444400 chr5B 77.594 424 70 20 399 812 670301597 670301189 1.770000e-57 233.0
24 TraesCS5D01G444400 chr5B 78.070 342 55 17 511 843 425178079 425178409 6.450000e-47 198.0
25 TraesCS5D01G444400 chr5B 82.906 117 19 1 301 416 509481499 509481615 1.450000e-18 104.0
26 TraesCS5D01G444400 chr2D 97.789 407 4 3 2155 2557 617045059 617044654 0.000000e+00 697.0
27 TraesCS5D01G444400 chr2D 96.314 407 11 1 2155 2557 30004784 30005190 0.000000e+00 665.0
28 TraesCS5D01G444400 chr1D 97.304 408 6 2 2154 2557 102156659 102156253 0.000000e+00 688.0
29 TraesCS5D01G444400 chr1D 94.390 410 16 3 2155 2557 18760685 18761094 8.980000e-175 623.0
30 TraesCS5D01G444400 chr1D 89.947 189 10 7 1141 1320 185066227 185066415 4.910000e-58 235.0
31 TraesCS5D01G444400 chr1D 81.119 286 10 11 1889 2150 185073945 185074210 3.880000e-44 189.0
32 TraesCS5D01G444400 chr1D 94.444 90 5 0 1802 1891 185073649 185073738 3.960000e-29 139.0
33 TraesCS5D01G444400 chr1D 87.156 109 5 2 1556 1655 185068681 185068789 6.680000e-22 115.0
34 TraesCS5D01G444400 chr1D 91.549 71 4 2 1453 1522 185066764 185066833 2.420000e-16 97.1
35 TraesCS5D01G444400 chr1D 82.883 111 7 3 1665 1766 185073386 185073493 4.050000e-14 89.8
36 TraesCS5D01G444400 chr4A 94.621 409 15 4 2155 2557 503613498 503613905 6.940000e-176 627.0
37 TraesCS5D01G444400 chr4A 80.112 538 76 23 325 840 432498041 432498569 3.590000e-99 372.0
38 TraesCS5D01G444400 chrUn 94.390 410 16 3 2155 2557 160951 161360 8.980000e-175 623.0
39 TraesCS5D01G444400 chr3B 80.034 581 95 19 158 731 673803116 673802550 7.610000e-111 411.0
40 TraesCS5D01G444400 chr2A 79.294 425 62 23 433 845 10535939 10536349 1.040000e-69 274.0
41 TraesCS5D01G444400 chr1B 89.418 189 11 7 1141 1320 259797154 259796966 2.290000e-56 230.0
42 TraesCS5D01G444400 chr1B 80.623 289 13 13 1889 2153 259787748 259787479 1.810000e-42 183.0
43 TraesCS5D01G444400 chr1B 96.429 84 3 0 1808 1891 259788038 259787955 3.960000e-29 139.0
44 TraesCS5D01G444400 chr1B 87.156 109 5 2 1556 1655 259794558 259794450 6.680000e-22 115.0
45 TraesCS5D01G444400 chr1B 91.892 74 4 2 1453 1525 259796617 259796545 5.200000e-18 102.0
46 TraesCS5D01G444400 chr1B 83.333 108 6 3 1668 1766 259788305 259788201 4.050000e-14 89.8
47 TraesCS5D01G444400 chr1A 89.418 189 11 7 1141 1320 172185407 172185595 2.290000e-56 230.0
48 TraesCS5D01G444400 chr1A 81.119 286 11 10 1889 2150 172193402 172193668 3.880000e-44 189.0
49 TraesCS5D01G444400 chr1A 94.444 90 5 0 1802 1891 172193106 172193195 3.960000e-29 139.0
50 TraesCS5D01G444400 chr1A 87.156 109 5 2 1556 1655 172187974 172188082 6.680000e-22 115.0
51 TraesCS5D01G444400 chr1A 91.892 74 4 2 1453 1525 172185943 172186015 5.200000e-18 102.0
52 TraesCS5D01G444400 chr1A 87.879 66 5 2 1701 1766 172192889 172192951 1.130000e-09 75.0
53 TraesCS5D01G444400 chr6B 76.543 486 71 34 375 848 34444648 34444194 2.960000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G444400 chr5D 495365329 495368277 2948 True 5446.000000 5446 100.000000 1 2949 1 chr5D.!!$R3 2948
1 TraesCS5D01G444400 chr5D 495343171 495344656 1485 True 535.666667 760 89.590667 1008 2949 3 chr5D.!!$R4 1941
2 TraesCS5D01G444400 chr5A 619466997 619472727 5730 True 886.600000 1700 88.876800 1 2947 5 chr5A.!!$R2 2946
3 TraesCS5D01G444400 chr3D 438570078 438572234 2156 True 756.000000 1663 89.886333 1 2949 3 chr3D.!!$R1 2948
4 TraesCS5D01G444400 chr3D 607972273 607972850 577 False 270.000000 270 75.920000 209 786 1 chr3D.!!$F2 577
5 TraesCS5D01G444400 chr5B 611998613 612001519 2906 True 585.000000 989 89.430200 1 2949 5 chr5B.!!$R2 2948
6 TraesCS5D01G444400 chr4A 432498041 432498569 528 False 372.000000 372 80.112000 325 840 1 chr4A.!!$F1 515
7 TraesCS5D01G444400 chr3B 673802550 673803116 566 True 411.000000 411 80.034000 158 731 1 chr3B.!!$R1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.541863 ATCTCCCGGTCATTGTGTCC 59.458 55.000 0.00 0.0 0.00 4.02 F
163 169 1.025812 TGGTTACGGCCAGTTTTGTG 58.974 50.000 2.24 0.0 33.97 3.33 F
1431 4701 1.133388 GGATGAATGGGGCTGATCCAA 60.133 52.381 0.00 0.0 37.87 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1061 1205 0.031585 CTTTGGTGACGACGTCCTCA 59.968 55.0 24.33 18.51 0.00 3.86 R
1520 4790 0.106167 TCCGGTCTGGGTCCTCATAG 60.106 60.0 0.00 0.00 38.76 2.23 R
2300 5693 0.034756 CACGACCTCCACCAATGTGA 59.965 55.0 0.00 0.00 45.76 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.216046 CATGATCTCCCGGTCATTGTG 58.784 52.381 0.00 0.00 32.98 3.33
36 37 0.541863 ATCTCCCGGTCATTGTGTCC 59.458 55.000 0.00 0.00 0.00 4.02
51 52 2.815503 TGTGTCCTGATGATGCAAACAG 59.184 45.455 0.00 0.00 0.00 3.16
84 85 3.815401 ACAGGTTAGTGAAGTGCATGAAC 59.185 43.478 0.00 0.00 0.00 3.18
105 107 6.772716 TGAACAGAAAAGAAAAGGCTAGTGAT 59.227 34.615 0.00 0.00 0.00 3.06
106 108 7.285401 TGAACAGAAAAGAAAAGGCTAGTGATT 59.715 33.333 0.00 0.00 0.00 2.57
155 161 1.249407 GAAACCAATGGTTACGGCCA 58.751 50.000 19.06 0.00 46.20 5.36
156 162 1.201414 GAAACCAATGGTTACGGCCAG 59.799 52.381 19.06 0.00 46.20 4.85
163 169 1.025812 TGGTTACGGCCAGTTTTGTG 58.974 50.000 2.24 0.00 33.97 3.33
172 178 4.038642 ACGGCCAGTTTTGTGTTATTTCAT 59.961 37.500 2.24 0.00 0.00 2.57
192 203 6.601741 TCATTTTTGTCAACATTTCTTGGC 57.398 33.333 0.00 0.00 0.00 4.52
265 276 6.060028 TGTGAAGAAATTTGGAAGTCGAAG 57.940 37.500 0.00 0.00 0.00 3.79
740 855 7.694388 AAAATAAACAGAAACGGAGAAAAGC 57.306 32.000 0.00 0.00 0.00 3.51
745 860 5.066968 ACAGAAACGGAGAAAAGCAAAAA 57.933 34.783 0.00 0.00 0.00 1.94
781 896 8.581253 AAAGAAGGAGAAAAGAGAAGAAACAA 57.419 30.769 0.00 0.00 0.00 2.83
878 998 4.145052 GTCTTCCCTCAAATCAGTGGTTT 58.855 43.478 0.00 0.00 0.00 3.27
891 1011 3.456644 TCAGTGGTTTCTTTAGTCCCACA 59.543 43.478 9.54 0.00 46.34 4.17
893 1013 4.827284 CAGTGGTTTCTTTAGTCCCACATT 59.173 41.667 9.54 0.00 46.34 2.71
1061 1205 1.392710 CCGCCTACCTCTCCATCGTT 61.393 60.000 0.00 0.00 0.00 3.85
1431 4701 1.133388 GGATGAATGGGGCTGATCCAA 60.133 52.381 0.00 0.00 37.87 3.53
1434 4704 3.119009 TGAATGGGGCTGATCCAAAAT 57.881 42.857 0.00 0.00 37.87 1.82
1520 4790 2.224018 TGATGTGAACCTTGCTTTTGCC 60.224 45.455 0.00 0.00 46.87 4.52
1526 4796 3.507233 TGAACCTTGCTTTTGCCTATGAG 59.493 43.478 0.00 0.00 46.87 2.90
1529 4799 2.424956 CCTTGCTTTTGCCTATGAGGAC 59.575 50.000 0.00 0.00 46.87 3.85
1530 4800 2.128771 TGCTTTTGCCTATGAGGACC 57.871 50.000 0.00 0.00 46.87 4.46
1531 4801 1.340991 TGCTTTTGCCTATGAGGACCC 60.341 52.381 0.00 0.00 46.87 4.46
1532 4802 1.340991 GCTTTTGCCTATGAGGACCCA 60.341 52.381 0.00 0.00 37.67 4.51
1533 4803 2.648059 CTTTTGCCTATGAGGACCCAG 58.352 52.381 0.00 0.00 37.67 4.45
1534 4804 1.965414 TTTGCCTATGAGGACCCAGA 58.035 50.000 0.00 0.00 37.67 3.86
1545 4815 1.227674 GACCCAGACCGGATGATGC 60.228 63.158 9.46 0.00 36.56 3.91
1546 4816 2.111878 CCCAGACCGGATGATGCC 59.888 66.667 9.46 0.00 36.56 4.40
1547 4817 2.745308 CCCAGACCGGATGATGCCA 61.745 63.158 9.46 0.00 36.56 4.92
1549 4819 1.524002 CAGACCGGATGATGCCACT 59.476 57.895 9.46 0.00 0.00 4.00
1553 4838 1.884464 CCGGATGATGCCACTGACG 60.884 63.158 0.00 0.00 0.00 4.35
1565 4850 2.160417 GCCACTGACGAAGGATTTTCTG 59.840 50.000 0.00 0.00 0.00 3.02
1570 4855 4.932200 ACTGACGAAGGATTTTCTGATGAC 59.068 41.667 0.00 0.00 0.00 3.06
1571 4856 5.152623 TGACGAAGGATTTTCTGATGACT 57.847 39.130 0.00 0.00 0.00 3.41
1640 4925 0.966875 TGCCACAACAGGATGGATGC 60.967 55.000 0.00 0.00 43.62 3.91
1683 5031 0.675083 TGATGCAACACCAAAGCCAG 59.325 50.000 0.00 0.00 0.00 4.85
1745 5099 2.175530 ATGAAGATGACGACGACGAC 57.824 50.000 15.32 8.68 42.66 4.34
1748 5102 0.725686 AAGATGACGACGACGACGAT 59.274 50.000 25.15 9.92 42.66 3.73
1751 5105 0.656259 ATGACGACGACGACGATGAT 59.344 50.000 25.15 10.92 42.66 2.45
1752 5106 0.247537 TGACGACGACGACGATGATG 60.248 55.000 25.15 1.27 42.66 3.07
1753 5107 0.025898 GACGACGACGACGATGATGA 59.974 55.000 25.15 0.00 42.66 2.92
1754 5108 0.247576 ACGACGACGACGATGATGAC 60.248 55.000 25.15 0.00 42.66 3.06
1755 5109 0.247537 CGACGACGACGATGATGACA 60.248 55.000 15.32 0.00 42.66 3.58
1784 5138 0.950555 TTGATGACACGCAGCACCTC 60.951 55.000 0.00 0.00 43.64 3.85
1884 5238 3.460857 ACGGCAGAGATGTTCTATTCC 57.539 47.619 0.00 0.00 33.83 3.01
1983 5344 8.812972 TGTATCTACTGTCTTTAACACAAGGAT 58.187 33.333 0.00 0.00 33.24 3.24
1986 5347 9.877178 ATCTACTGTCTTTAACACAAGGATAAG 57.123 33.333 0.00 0.00 33.24 1.73
1987 5348 8.311836 TCTACTGTCTTTAACACAAGGATAAGG 58.688 37.037 0.00 0.00 33.24 2.69
1988 5349 7.074653 ACTGTCTTTAACACAAGGATAAGGA 57.925 36.000 0.00 0.00 33.24 3.36
2040 5401 2.017049 GGCGAGTTTGGCACTATGAAT 58.983 47.619 0.00 0.00 35.01 2.57
2048 5409 3.415457 TGGCACTATGAATGTGTGTCA 57.585 42.857 0.00 0.00 42.87 3.58
2120 5513 1.533731 GTTGGTACGGTTGTGGACATG 59.466 52.381 0.00 0.00 0.00 3.21
2153 5546 2.054799 TCACTTAAAGCTGGTGGGACT 58.945 47.619 0.00 0.00 0.00 3.85
2154 5547 2.154462 CACTTAAAGCTGGTGGGACTG 58.846 52.381 0.00 0.00 0.00 3.51
2155 5548 2.054799 ACTTAAAGCTGGTGGGACTGA 58.945 47.619 0.00 0.00 0.00 3.41
2156 5549 2.441750 ACTTAAAGCTGGTGGGACTGAA 59.558 45.455 0.00 0.00 0.00 3.02
2157 5550 3.117663 ACTTAAAGCTGGTGGGACTGAAA 60.118 43.478 0.00 0.00 0.00 2.69
2158 5551 1.986882 AAAGCTGGTGGGACTGAAAG 58.013 50.000 0.00 0.00 42.29 2.62
2175 5568 6.097915 CTGAAAGTACCTTTCTACACCTGA 57.902 41.667 15.48 0.00 46.84 3.86
2176 5569 6.097915 TGAAAGTACCTTTCTACACCTGAG 57.902 41.667 15.48 0.00 46.84 3.35
2177 5570 4.538746 AAGTACCTTTCTACACCTGAGC 57.461 45.455 0.00 0.00 0.00 4.26
2178 5571 3.780626 AGTACCTTTCTACACCTGAGCT 58.219 45.455 0.00 0.00 0.00 4.09
2179 5572 3.764972 AGTACCTTTCTACACCTGAGCTC 59.235 47.826 6.82 6.82 0.00 4.09
2180 5573 2.609747 ACCTTTCTACACCTGAGCTCA 58.390 47.619 17.19 17.19 0.00 4.26
2181 5574 3.177228 ACCTTTCTACACCTGAGCTCAT 58.823 45.455 18.63 4.63 0.00 2.90
2182 5575 4.353777 ACCTTTCTACACCTGAGCTCATA 58.646 43.478 18.63 5.70 0.00 2.15
2183 5576 4.965532 ACCTTTCTACACCTGAGCTCATAT 59.034 41.667 18.63 5.36 0.00 1.78
2184 5577 5.163364 ACCTTTCTACACCTGAGCTCATATG 60.163 44.000 18.63 19.73 0.00 1.78
2185 5578 4.327982 TTCTACACCTGAGCTCATATGC 57.672 45.455 18.63 0.00 0.00 3.14
2195 5588 3.613494 AGCTCATATGCTCCTGCTATG 57.387 47.619 0.00 0.00 39.34 2.23
2196 5589 3.171528 AGCTCATATGCTCCTGCTATGA 58.828 45.455 0.00 0.00 39.34 2.15
2197 5590 3.581770 AGCTCATATGCTCCTGCTATGAA 59.418 43.478 0.00 0.00 39.34 2.57
2198 5591 3.683822 GCTCATATGCTCCTGCTATGAAC 59.316 47.826 0.00 0.00 38.05 3.18
2199 5592 4.801914 GCTCATATGCTCCTGCTATGAACA 60.802 45.833 0.00 0.00 38.05 3.18
2200 5593 4.891260 TCATATGCTCCTGCTATGAACAG 58.109 43.478 0.00 0.00 36.90 3.16
2201 5594 4.346127 TCATATGCTCCTGCTATGAACAGT 59.654 41.667 0.00 0.00 36.90 3.55
2202 5595 5.539955 TCATATGCTCCTGCTATGAACAGTA 59.460 40.000 0.00 0.00 36.90 2.74
2203 5596 4.760530 ATGCTCCTGCTATGAACAGTAA 57.239 40.909 0.00 0.00 40.48 2.24
2204 5597 4.551702 TGCTCCTGCTATGAACAGTAAA 57.448 40.909 0.00 0.00 40.48 2.01
2205 5598 4.905429 TGCTCCTGCTATGAACAGTAAAA 58.095 39.130 0.00 0.00 40.48 1.52
2206 5599 5.500234 TGCTCCTGCTATGAACAGTAAAAT 58.500 37.500 0.00 0.00 40.48 1.82
2207 5600 6.649155 TGCTCCTGCTATGAACAGTAAAATA 58.351 36.000 0.00 0.00 40.48 1.40
2208 5601 7.109501 TGCTCCTGCTATGAACAGTAAAATAA 58.890 34.615 0.00 0.00 40.48 1.40
2209 5602 7.609918 TGCTCCTGCTATGAACAGTAAAATAAA 59.390 33.333 0.00 0.00 40.48 1.40
2210 5603 8.624776 GCTCCTGCTATGAACAGTAAAATAAAT 58.375 33.333 0.00 0.00 36.03 1.40
2278 5671 9.030301 ACATACTTTAAGAAATGTTTGTTGTGC 57.970 29.630 0.00 0.00 33.91 4.57
2279 5672 9.029243 CATACTTTAAGAAATGTTTGTTGTGCA 57.971 29.630 0.00 0.00 0.00 4.57
2280 5673 9.762933 ATACTTTAAGAAATGTTTGTTGTGCAT 57.237 25.926 0.00 0.00 0.00 3.96
2281 5674 7.908230 ACTTTAAGAAATGTTTGTTGTGCATG 58.092 30.769 0.00 0.00 0.00 4.06
2282 5675 4.799419 AAGAAATGTTTGTTGTGCATGC 57.201 36.364 11.82 11.82 0.00 4.06
2283 5676 3.794717 AGAAATGTTTGTTGTGCATGCA 58.205 36.364 18.46 18.46 0.00 3.96
2284 5677 4.190001 AGAAATGTTTGTTGTGCATGCAA 58.810 34.783 24.58 10.26 0.00 4.08
2285 5678 4.634883 AGAAATGTTTGTTGTGCATGCAAA 59.365 33.333 24.58 15.92 0.00 3.68
2286 5679 4.959596 AATGTTTGTTGTGCATGCAAAA 57.040 31.818 24.58 21.90 34.47 2.44
2287 5680 5.502153 AATGTTTGTTGTGCATGCAAAAT 57.498 30.435 25.58 6.44 34.47 1.82
2288 5681 4.959596 TGTTTGTTGTGCATGCAAAATT 57.040 31.818 25.58 0.00 34.47 1.82
2289 5682 5.306532 TGTTTGTTGTGCATGCAAAATTT 57.693 30.435 25.58 0.00 34.47 1.82
2290 5683 5.330295 TGTTTGTTGTGCATGCAAAATTTC 58.670 33.333 25.58 13.82 34.47 2.17
2291 5684 5.106436 TGTTTGTTGTGCATGCAAAATTTCA 60.106 32.000 25.58 16.21 34.47 2.69
2292 5685 5.752892 TTGTTGTGCATGCAAAATTTCAT 57.247 30.435 25.58 0.00 0.00 2.57
2293 5686 5.345609 TGTTGTGCATGCAAAATTTCATC 57.654 34.783 25.58 15.25 0.00 2.92
2294 5687 4.814771 TGTTGTGCATGCAAAATTTCATCA 59.185 33.333 25.58 17.41 0.00 3.07
2295 5688 4.994220 TGTGCATGCAAAATTTCATCAC 57.006 36.364 24.58 5.73 0.00 3.06
2296 5689 3.429207 TGTGCATGCAAAATTTCATCACG 59.571 39.130 24.58 0.00 0.00 4.35
2297 5690 3.674281 GTGCATGCAAAATTTCATCACGA 59.326 39.130 24.58 0.00 0.00 4.35
2298 5691 4.150274 GTGCATGCAAAATTTCATCACGAA 59.850 37.500 24.58 0.00 0.00 3.85
2309 5702 5.703978 TTTCATCACGAAATCACATTGGT 57.296 34.783 0.00 0.00 38.72 3.67
2310 5703 4.683501 TCATCACGAAATCACATTGGTG 57.316 40.909 0.00 0.00 46.66 4.17
2311 5704 3.439825 TCATCACGAAATCACATTGGTGG 59.560 43.478 0.00 0.00 45.32 4.61
2312 5705 3.133141 TCACGAAATCACATTGGTGGA 57.867 42.857 0.00 0.00 45.32 4.02
2313 5706 3.073678 TCACGAAATCACATTGGTGGAG 58.926 45.455 0.00 0.00 45.32 3.86
2314 5707 2.162208 CACGAAATCACATTGGTGGAGG 59.838 50.000 0.00 0.00 45.32 4.30
2315 5708 2.224769 ACGAAATCACATTGGTGGAGGT 60.225 45.455 0.00 0.00 45.32 3.85
2316 5709 2.420022 CGAAATCACATTGGTGGAGGTC 59.580 50.000 0.00 0.00 45.32 3.85
2317 5710 2.113860 AATCACATTGGTGGAGGTCG 57.886 50.000 0.00 0.00 45.32 4.79
2318 5711 0.984230 ATCACATTGGTGGAGGTCGT 59.016 50.000 0.00 0.00 45.32 4.34
2319 5712 0.034756 TCACATTGGTGGAGGTCGTG 59.965 55.000 0.00 0.00 45.32 4.35
2320 5713 0.955428 CACATTGGTGGAGGTCGTGG 60.955 60.000 0.00 0.00 41.45 4.94
2321 5714 2.040544 CATTGGTGGAGGTCGTGGC 61.041 63.158 0.00 0.00 0.00 5.01
2322 5715 2.525124 ATTGGTGGAGGTCGTGGCA 61.525 57.895 0.00 0.00 0.00 4.92
2323 5716 2.063015 ATTGGTGGAGGTCGTGGCAA 62.063 55.000 0.00 0.00 0.00 4.52
2324 5717 2.112297 GGTGGAGGTCGTGGCAAA 59.888 61.111 0.00 0.00 0.00 3.68
2325 5718 1.527380 GGTGGAGGTCGTGGCAAAA 60.527 57.895 0.00 0.00 0.00 2.44
2326 5719 1.104577 GGTGGAGGTCGTGGCAAAAA 61.105 55.000 0.00 0.00 0.00 1.94
2327 5720 0.958822 GTGGAGGTCGTGGCAAAAAT 59.041 50.000 0.00 0.00 0.00 1.82
2328 5721 2.156098 GTGGAGGTCGTGGCAAAAATA 58.844 47.619 0.00 0.00 0.00 1.40
2329 5722 2.554893 GTGGAGGTCGTGGCAAAAATAA 59.445 45.455 0.00 0.00 0.00 1.40
2330 5723 2.554893 TGGAGGTCGTGGCAAAAATAAC 59.445 45.455 0.00 0.00 0.00 1.89
2331 5724 2.554893 GGAGGTCGTGGCAAAAATAACA 59.445 45.455 0.00 0.00 0.00 2.41
2332 5725 3.004944 GGAGGTCGTGGCAAAAATAACAA 59.995 43.478 0.00 0.00 0.00 2.83
2333 5726 4.500035 GGAGGTCGTGGCAAAAATAACAAA 60.500 41.667 0.00 0.00 0.00 2.83
2334 5727 5.012328 AGGTCGTGGCAAAAATAACAAAA 57.988 34.783 0.00 0.00 0.00 2.44
2335 5728 5.606505 AGGTCGTGGCAAAAATAACAAAAT 58.393 33.333 0.00 0.00 0.00 1.82
2336 5729 5.694458 AGGTCGTGGCAAAAATAACAAAATC 59.306 36.000 0.00 0.00 0.00 2.17
2337 5730 5.463724 GGTCGTGGCAAAAATAACAAAATCA 59.536 36.000 0.00 0.00 0.00 2.57
2338 5731 6.018669 GGTCGTGGCAAAAATAACAAAATCAA 60.019 34.615 0.00 0.00 0.00 2.57
2339 5732 7.402640 GTCGTGGCAAAAATAACAAAATCAAA 58.597 30.769 0.00 0.00 0.00 2.69
2340 5733 7.582319 GTCGTGGCAAAAATAACAAAATCAAAG 59.418 33.333 0.00 0.00 0.00 2.77
2341 5734 6.356714 CGTGGCAAAAATAACAAAATCAAAGC 59.643 34.615 0.00 0.00 0.00 3.51
2342 5735 7.416817 GTGGCAAAAATAACAAAATCAAAGCT 58.583 30.769 0.00 0.00 0.00 3.74
2343 5736 7.587392 GTGGCAAAAATAACAAAATCAAAGCTC 59.413 33.333 0.00 0.00 0.00 4.09
2344 5737 7.077605 GGCAAAAATAACAAAATCAAAGCTCC 58.922 34.615 0.00 0.00 0.00 4.70
2345 5738 7.255070 GGCAAAAATAACAAAATCAAAGCTCCA 60.255 33.333 0.00 0.00 0.00 3.86
2346 5739 8.127954 GCAAAAATAACAAAATCAAAGCTCCAA 58.872 29.630 0.00 0.00 0.00 3.53
2352 5745 7.406799 AACAAAATCAAAGCTCCAAAATACG 57.593 32.000 0.00 0.00 0.00 3.06
2353 5746 6.512297 ACAAAATCAAAGCTCCAAAATACGT 58.488 32.000 0.00 0.00 0.00 3.57
2354 5747 6.983890 ACAAAATCAAAGCTCCAAAATACGTT 59.016 30.769 0.00 0.00 0.00 3.99
2355 5748 7.494298 ACAAAATCAAAGCTCCAAAATACGTTT 59.506 29.630 0.00 0.00 0.00 3.60
2356 5749 7.406799 AAATCAAAGCTCCAAAATACGTTTG 57.593 32.000 0.00 0.00 45.36 2.93
2385 5778 9.965824 AGTAACATTTTCAATCGATTTTGTTCT 57.034 25.926 8.21 9.53 0.00 3.01
2393 5786 9.587772 TTTCAATCGATTTTGTTCTTTTTACCA 57.412 25.926 8.21 0.00 0.00 3.25
2394 5787 9.757227 TTCAATCGATTTTGTTCTTTTTACCAT 57.243 25.926 8.21 0.00 0.00 3.55
2395 5788 9.190858 TCAATCGATTTTGTTCTTTTTACCATG 57.809 29.630 8.21 0.00 0.00 3.66
2396 5789 7.581011 ATCGATTTTGTTCTTTTTACCATGC 57.419 32.000 0.00 0.00 0.00 4.06
2397 5790 5.923684 TCGATTTTGTTCTTTTTACCATGCC 59.076 36.000 0.00 0.00 0.00 4.40
2398 5791 5.925969 CGATTTTGTTCTTTTTACCATGCCT 59.074 36.000 0.00 0.00 0.00 4.75
2399 5792 6.423604 CGATTTTGTTCTTTTTACCATGCCTT 59.576 34.615 0.00 0.00 0.00 4.35
2400 5793 7.359181 CGATTTTGTTCTTTTTACCATGCCTTC 60.359 37.037 0.00 0.00 0.00 3.46
2401 5794 4.864704 TGTTCTTTTTACCATGCCTTCC 57.135 40.909 0.00 0.00 0.00 3.46
2402 5795 4.219115 TGTTCTTTTTACCATGCCTTCCA 58.781 39.130 0.00 0.00 0.00 3.53
2403 5796 4.038642 TGTTCTTTTTACCATGCCTTCCAC 59.961 41.667 0.00 0.00 0.00 4.02
2404 5797 3.161866 TCTTTTTACCATGCCTTCCACC 58.838 45.455 0.00 0.00 0.00 4.61
2405 5798 2.685106 TTTTACCATGCCTTCCACCA 57.315 45.000 0.00 0.00 0.00 4.17
2406 5799 2.685106 TTTACCATGCCTTCCACCAA 57.315 45.000 0.00 0.00 0.00 3.67
2407 5800 2.917713 TTACCATGCCTTCCACCAAT 57.082 45.000 0.00 0.00 0.00 3.16
2408 5801 2.142356 TACCATGCCTTCCACCAATG 57.858 50.000 0.00 0.00 0.00 2.82
2409 5802 0.114954 ACCATGCCTTCCACCAATGT 59.885 50.000 0.00 0.00 0.00 2.71
2410 5803 0.819582 CCATGCCTTCCACCAATGTC 59.180 55.000 0.00 0.00 0.00 3.06
2411 5804 1.548081 CATGCCTTCCACCAATGTCA 58.452 50.000 0.00 0.00 0.00 3.58
2412 5805 2.104967 CATGCCTTCCACCAATGTCAT 58.895 47.619 0.00 0.00 0.00 3.06
2413 5806 2.307496 TGCCTTCCACCAATGTCATT 57.693 45.000 0.00 0.00 0.00 2.57
2414 5807 2.607499 TGCCTTCCACCAATGTCATTT 58.393 42.857 0.00 0.00 0.00 2.32
2415 5808 2.562298 TGCCTTCCACCAATGTCATTTC 59.438 45.455 0.00 0.00 0.00 2.17
2416 5809 2.562298 GCCTTCCACCAATGTCATTTCA 59.438 45.455 0.00 0.00 0.00 2.69
2417 5810 3.196254 GCCTTCCACCAATGTCATTTCAT 59.804 43.478 0.00 0.00 0.00 2.57
2418 5811 4.751060 CCTTCCACCAATGTCATTTCATG 58.249 43.478 0.00 0.00 0.00 3.07
2419 5812 4.463539 CCTTCCACCAATGTCATTTCATGA 59.536 41.667 0.00 0.00 36.84 3.07
2434 5827 4.970472 TTCATGACGAAATTTTGCAAGC 57.030 36.364 5.27 0.00 0.00 4.01
2435 5828 3.974912 TCATGACGAAATTTTGCAAGCA 58.025 36.364 5.27 0.00 0.00 3.91
2436 5829 3.735240 TCATGACGAAATTTTGCAAGCAC 59.265 39.130 5.27 0.00 0.00 4.40
2437 5830 3.156511 TGACGAAATTTTGCAAGCACA 57.843 38.095 5.27 0.00 0.00 4.57
2438 5831 3.515630 TGACGAAATTTTGCAAGCACAA 58.484 36.364 5.27 0.00 0.00 3.33
2439 5832 3.305629 TGACGAAATTTTGCAAGCACAAC 59.694 39.130 5.27 0.00 0.00 3.32
2440 5833 3.257393 ACGAAATTTTGCAAGCACAACA 58.743 36.364 5.27 0.00 0.00 3.33
2441 5834 3.681897 ACGAAATTTTGCAAGCACAACAA 59.318 34.783 5.27 0.00 0.00 2.83
2442 5835 4.153117 ACGAAATTTTGCAAGCACAACAAA 59.847 33.333 5.27 0.00 0.00 2.83
2443 5836 4.491591 CGAAATTTTGCAAGCACAACAAAC 59.508 37.500 0.00 0.00 33.29 2.93
2444 5837 5.368256 AAATTTTGCAAGCACAACAAACA 57.632 30.435 0.00 0.00 33.29 2.83
2445 5838 5.564048 AATTTTGCAAGCACAACAAACAT 57.436 30.435 0.00 0.00 33.29 2.71
2446 5839 5.564048 ATTTTGCAAGCACAACAAACATT 57.436 30.435 0.00 0.00 33.29 2.71
2447 5840 5.368256 TTTTGCAAGCACAACAAACATTT 57.632 30.435 0.00 0.00 33.29 2.32
2448 5841 4.596801 TTGCAAGCACAACAAACATTTC 57.403 36.364 0.00 0.00 0.00 2.17
2449 5842 3.859443 TGCAAGCACAACAAACATTTCT 58.141 36.364 0.00 0.00 0.00 2.52
2450 5843 4.252073 TGCAAGCACAACAAACATTTCTT 58.748 34.783 0.00 0.00 0.00 2.52
2451 5844 5.414360 TGCAAGCACAACAAACATTTCTTA 58.586 33.333 0.00 0.00 0.00 2.10
2452 5845 5.871524 TGCAAGCACAACAAACATTTCTTAA 59.128 32.000 0.00 0.00 0.00 1.85
2453 5846 6.369890 TGCAAGCACAACAAACATTTCTTAAA 59.630 30.769 0.00 0.00 0.00 1.52
2454 5847 6.901357 GCAAGCACAACAAACATTTCTTAAAG 59.099 34.615 0.00 0.00 0.00 1.85
2455 5848 7.412891 GCAAGCACAACAAACATTTCTTAAAGT 60.413 33.333 0.00 0.00 0.00 2.66
2456 5849 9.081997 CAAGCACAACAAACATTTCTTAAAGTA 57.918 29.630 0.00 0.00 0.00 2.24
2457 5850 9.816354 AAGCACAACAAACATTTCTTAAAGTAT 57.184 25.926 0.00 0.00 0.00 2.12
2458 5851 9.248291 AGCACAACAAACATTTCTTAAAGTATG 57.752 29.630 0.00 0.00 0.00 2.39
2459 5852 8.003784 GCACAACAAACATTTCTTAAAGTATGC 58.996 33.333 0.00 0.00 0.00 3.14
2460 5853 8.487176 CACAACAAACATTTCTTAAAGTATGCC 58.513 33.333 0.00 0.00 0.00 4.40
2461 5854 8.200792 ACAACAAACATTTCTTAAAGTATGCCA 58.799 29.630 0.00 0.00 0.00 4.92
2462 5855 8.487176 CAACAAACATTTCTTAAAGTATGCCAC 58.513 33.333 0.00 0.00 0.00 5.01
2463 5856 7.721402 ACAAACATTTCTTAAAGTATGCCACA 58.279 30.769 0.00 0.00 0.00 4.17
2464 5857 8.200792 ACAAACATTTCTTAAAGTATGCCACAA 58.799 29.630 0.00 0.00 0.00 3.33
2465 5858 9.039870 CAAACATTTCTTAAAGTATGCCACAAA 57.960 29.630 0.00 0.00 0.00 2.83
2466 5859 9.606631 AAACATTTCTTAAAGTATGCCACAAAA 57.393 25.926 0.00 0.00 0.00 2.44
2467 5860 9.606631 AACATTTCTTAAAGTATGCCACAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
2528 5921 7.969536 TTATTTTACTGATCATAGCAGGAGC 57.030 36.000 0.00 0.00 37.69 4.70
2529 5922 5.357742 TTTTACTGATCATAGCAGGAGCA 57.642 39.130 0.00 0.00 45.49 4.26
2530 5923 5.557576 TTTACTGATCATAGCAGGAGCAT 57.442 39.130 0.00 0.00 45.49 3.79
2531 5924 6.670695 TTTACTGATCATAGCAGGAGCATA 57.329 37.500 0.00 0.00 45.49 3.14
2532 5925 6.864151 TTACTGATCATAGCAGGAGCATAT 57.136 37.500 0.00 0.00 45.49 1.78
2533 5926 5.087391 ACTGATCATAGCAGGAGCATATG 57.913 43.478 0.00 0.00 45.49 1.78
2534 5927 4.776308 ACTGATCATAGCAGGAGCATATGA 59.224 41.667 6.97 10.02 45.49 2.15
2535 5928 5.105269 ACTGATCATAGCAGGAGCATATGAG 60.105 44.000 6.97 0.00 45.49 2.90
2536 5929 3.606595 TCATAGCAGGAGCATATGAGC 57.393 47.619 6.97 1.86 45.49 4.26
2547 5940 3.570540 AGCATATGAGCTCAGGTGTAGA 58.429 45.455 22.96 1.51 42.18 2.59
2548 5941 3.963374 AGCATATGAGCTCAGGTGTAGAA 59.037 43.478 22.96 0.00 42.18 2.10
2549 5942 4.406972 AGCATATGAGCTCAGGTGTAGAAA 59.593 41.667 22.96 0.00 42.18 2.52
2550 5943 4.509600 GCATATGAGCTCAGGTGTAGAAAC 59.490 45.833 22.96 5.66 0.00 2.78
2551 5944 5.683509 GCATATGAGCTCAGGTGTAGAAACT 60.684 44.000 22.96 2.84 0.00 2.66
2552 5945 3.944055 TGAGCTCAGGTGTAGAAACTC 57.056 47.619 13.74 0.00 0.00 3.01
2553 5946 2.563179 TGAGCTCAGGTGTAGAAACTCC 59.437 50.000 13.74 0.00 39.18 3.85
2554 5947 2.563179 GAGCTCAGGTGTAGAAACTCCA 59.437 50.000 9.40 0.00 40.97 3.86
2555 5948 2.300437 AGCTCAGGTGTAGAAACTCCAC 59.700 50.000 0.07 0.00 40.97 4.02
2556 5949 2.927014 GCTCAGGTGTAGAAACTCCACG 60.927 54.545 0.07 0.00 40.97 4.94
2570 5963 2.889617 CACGCTGGTGGGACGATA 59.110 61.111 0.00 0.00 40.58 2.92
2647 6042 3.797559 AGGGAAAAAGAGAAGGGACTG 57.202 47.619 0.00 0.00 40.86 3.51
2648 6043 3.056832 AGGGAAAAAGAGAAGGGACTGT 58.943 45.455 0.00 0.00 40.86 3.55
2649 6044 3.073209 AGGGAAAAAGAGAAGGGACTGTC 59.927 47.826 0.00 0.00 40.86 3.51
2662 6057 5.579564 AGGGACTGTCGTCTATTCTTAAC 57.420 43.478 1.07 0.00 40.10 2.01
2683 6078 6.894339 AACTCGACTGATTTTTATTTGGGT 57.106 33.333 0.00 0.00 0.00 4.51
2710 6105 9.547753 TTAAGTCTAATTTCTGTCCTATGATGC 57.452 33.333 0.00 0.00 0.00 3.91
2811 6627 8.697507 AAGATGACTGAAAACCTTACAAGAAT 57.302 30.769 0.00 0.00 0.00 2.40
2844 6662 9.748708 CTGAAAAACCTGAAGATAGATAGAGAG 57.251 37.037 0.00 0.00 0.00 3.20
2853 6671 5.179452 AGATAGATAGAGAGGAGGACTGC 57.821 47.826 0.00 0.00 0.00 4.40
2887 6705 3.375922 TCAAAGGTGGTTGAGAAACGTTC 59.624 43.478 0.00 0.00 32.56 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.133790 GGCTGTTTGCATCATCAGGAC 59.866 52.381 0.00 0.00 45.15 3.85
36 37 3.306917 TTTGGCTGTTTGCATCATCAG 57.693 42.857 0.00 0.00 45.15 2.90
51 52 7.968405 CACTTCACTAACCTGTAATAATTTGGC 59.032 37.037 0.00 0.00 0.00 4.52
84 85 8.950210 TCATAATCACTAGCCTTTTCTTTTCTG 58.050 33.333 0.00 0.00 0.00 3.02
148 154 4.579340 TGAAATAACACAAAACTGGCCGTA 59.421 37.500 0.00 0.00 0.00 4.02
172 178 6.808008 TTTGCCAAGAAATGTTGACAAAAA 57.192 29.167 3.01 0.00 37.00 1.94
232 243 9.664332 TTCCAAATTTCTTCACAATTTTCAAGA 57.336 25.926 0.00 0.00 32.57 3.02
391 403 4.606961 AGCGCATATTACCAAATTTTCCG 58.393 39.130 11.47 0.00 0.00 4.30
763 878 6.426327 GCTCTGTTGTTTCTTCTCTTTTCTC 58.574 40.000 0.00 0.00 0.00 2.87
781 896 4.101448 GGCCCATGGTCGCTCTGT 62.101 66.667 11.73 0.00 0.00 3.41
809 925 4.722535 TCAGCCTCCCGAAGCCCT 62.723 66.667 0.00 0.00 0.00 5.19
878 998 2.642311 TCAGGCAATGTGGGACTAAAGA 59.358 45.455 0.00 0.00 0.00 2.52
970 1090 2.689034 GGGAGGTGGAGGTGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
971 1091 3.077556 CGGGAGGTGGAGGTGGAG 61.078 72.222 0.00 0.00 0.00 3.86
1042 1186 1.392710 AACGATGGAGAGGTAGGCGG 61.393 60.000 0.00 0.00 0.00 6.13
1043 1187 0.249073 CAACGATGGAGAGGTAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
1061 1205 0.031585 CTTTGGTGACGACGTCCTCA 59.968 55.000 24.33 18.51 0.00 3.86
1146 1290 0.234106 CAGTGCAGCAACTTCGTCTG 59.766 55.000 0.00 0.00 0.00 3.51
1358 1514 2.510906 GCATAGTCCCACGGCCAT 59.489 61.111 2.24 0.00 0.00 4.40
1359 1515 3.792736 GGCATAGTCCCACGGCCA 61.793 66.667 2.24 0.00 44.01 5.36
1397 4664 1.295020 TCATCCCCATCCCGTTTCTT 58.705 50.000 0.00 0.00 0.00 2.52
1431 4701 3.070576 GCTTGGGCGGCCAGATTT 61.071 61.111 30.86 0.00 0.00 2.17
1451 4721 1.725665 CGATGGAGGTTGCATGCAG 59.274 57.895 21.50 1.60 0.00 4.41
1453 4723 2.410469 GCGATGGAGGTTGCATGC 59.590 61.111 11.82 11.82 0.00 4.06
1520 4790 0.106167 TCCGGTCTGGGTCCTCATAG 60.106 60.000 0.00 0.00 38.76 2.23
1526 4796 1.447643 CATCATCCGGTCTGGGTCC 59.552 63.158 0.00 0.00 38.76 4.46
1529 4799 2.111878 GGCATCATCCGGTCTGGG 59.888 66.667 0.00 0.00 38.76 4.45
1530 4800 1.524621 GTGGCATCATCCGGTCTGG 60.525 63.158 0.00 0.00 40.09 3.86
1531 4801 0.812811 CAGTGGCATCATCCGGTCTG 60.813 60.000 0.00 0.14 0.00 3.51
1532 4802 0.977627 TCAGTGGCATCATCCGGTCT 60.978 55.000 0.00 0.00 0.00 3.85
1533 4803 0.811616 GTCAGTGGCATCATCCGGTC 60.812 60.000 0.00 0.00 0.00 4.79
1534 4804 1.221840 GTCAGTGGCATCATCCGGT 59.778 57.895 0.00 0.00 0.00 5.28
1545 4815 3.664107 TCAGAAAATCCTTCGTCAGTGG 58.336 45.455 0.00 0.00 0.00 4.00
1546 4816 4.931601 TCATCAGAAAATCCTTCGTCAGTG 59.068 41.667 0.00 0.00 0.00 3.66
1547 4817 4.932200 GTCATCAGAAAATCCTTCGTCAGT 59.068 41.667 0.00 0.00 0.00 3.41
1549 4819 5.152623 AGTCATCAGAAAATCCTTCGTCA 57.847 39.130 0.00 0.00 0.00 4.35
1553 4838 7.303998 CACAAGAAGTCATCAGAAAATCCTTC 58.696 38.462 0.00 0.00 0.00 3.46
1565 4850 3.813166 TCCGTTTTCCACAAGAAGTCATC 59.187 43.478 0.00 0.00 35.40 2.92
1570 4855 3.251004 CCTCTTCCGTTTTCCACAAGAAG 59.749 47.826 0.00 0.00 37.01 2.85
1571 4856 3.211045 CCTCTTCCGTTTTCCACAAGAA 58.789 45.455 0.00 0.00 0.00 2.52
1683 5031 1.087771 CCACCCGCTGTATCGTTTCC 61.088 60.000 0.00 0.00 0.00 3.13
1745 5099 7.597743 TCATCAAAGTCATCTATGTCATCATCG 59.402 37.037 0.00 0.00 35.70 3.84
1748 5102 7.493645 GTGTCATCAAAGTCATCTATGTCATCA 59.506 37.037 0.00 0.00 0.00 3.07
1751 5105 5.807011 CGTGTCATCAAAGTCATCTATGTCA 59.193 40.000 0.00 0.00 0.00 3.58
1752 5106 5.276584 GCGTGTCATCAAAGTCATCTATGTC 60.277 44.000 0.00 0.00 0.00 3.06
1753 5107 4.568359 GCGTGTCATCAAAGTCATCTATGT 59.432 41.667 0.00 0.00 0.00 2.29
1754 5108 4.567959 TGCGTGTCATCAAAGTCATCTATG 59.432 41.667 0.00 0.00 0.00 2.23
1755 5109 4.758688 TGCGTGTCATCAAAGTCATCTAT 58.241 39.130 0.00 0.00 0.00 1.98
1784 5138 0.874175 TGTCGAACTGTGCAAGGACG 60.874 55.000 0.00 0.00 0.00 4.79
1884 5238 2.551459 CAAACTCTCCTGAAGCCTTGTG 59.449 50.000 0.00 0.00 0.00 3.33
1938 5292 3.555966 ACAGCAGGCACCTAAAATATCC 58.444 45.455 0.00 0.00 0.00 2.59
1983 5344 4.414182 TCTTTTGTCACCTTCCCTTCCTTA 59.586 41.667 0.00 0.00 0.00 2.69
1984 5345 3.204382 TCTTTTGTCACCTTCCCTTCCTT 59.796 43.478 0.00 0.00 0.00 3.36
1985 5346 2.783510 TCTTTTGTCACCTTCCCTTCCT 59.216 45.455 0.00 0.00 0.00 3.36
1986 5347 3.149981 CTCTTTTGTCACCTTCCCTTCC 58.850 50.000 0.00 0.00 0.00 3.46
1987 5348 3.821748 ACTCTTTTGTCACCTTCCCTTC 58.178 45.455 0.00 0.00 0.00 3.46
1988 5349 3.953542 ACTCTTTTGTCACCTTCCCTT 57.046 42.857 0.00 0.00 0.00 3.95
2040 5401 3.066291 ACAGGAAAACACTGACACACA 57.934 42.857 0.00 0.00 39.24 3.72
2048 5409 2.689983 CAAGCCTCAACAGGAAAACACT 59.310 45.455 0.00 0.00 43.65 3.55
2109 5502 4.083110 CCATCTCAAGAACATGTCCACAAC 60.083 45.833 0.00 0.00 0.00 3.32
2120 5513 5.703130 AGCTTTAAGTGACCATCTCAAGAAC 59.297 40.000 0.00 0.00 0.00 3.01
2158 5551 3.510360 TGAGCTCAGGTGTAGAAAGGTAC 59.490 47.826 13.74 0.00 0.00 3.34
2159 5552 3.774734 TGAGCTCAGGTGTAGAAAGGTA 58.225 45.455 13.74 0.00 0.00 3.08
2160 5553 2.609747 TGAGCTCAGGTGTAGAAAGGT 58.390 47.619 13.74 0.00 0.00 3.50
2161 5554 3.902881 ATGAGCTCAGGTGTAGAAAGG 57.097 47.619 22.96 0.00 0.00 3.11
2162 5555 4.749099 GCATATGAGCTCAGGTGTAGAAAG 59.251 45.833 22.96 3.99 0.00 2.62
2163 5556 4.406972 AGCATATGAGCTCAGGTGTAGAAA 59.593 41.667 22.96 0.00 42.18 2.52
2164 5557 3.963374 AGCATATGAGCTCAGGTGTAGAA 59.037 43.478 22.96 0.00 42.18 2.10
2165 5558 3.570540 AGCATATGAGCTCAGGTGTAGA 58.429 45.455 22.96 1.51 42.18 2.59
2176 5569 3.606595 TCATAGCAGGAGCATATGAGC 57.393 47.619 6.97 1.86 45.49 4.26
2177 5570 4.891260 TGTTCATAGCAGGAGCATATGAG 58.109 43.478 6.97 0.00 45.49 2.90
2178 5571 4.346127 ACTGTTCATAGCAGGAGCATATGA 59.654 41.667 6.97 0.00 45.49 2.15
2179 5572 4.639334 ACTGTTCATAGCAGGAGCATATG 58.361 43.478 0.00 0.00 45.49 1.78
2180 5573 4.970860 ACTGTTCATAGCAGGAGCATAT 57.029 40.909 0.00 0.00 45.49 1.78
2181 5574 5.869649 TTACTGTTCATAGCAGGAGCATA 57.130 39.130 0.00 0.00 45.49 3.14
2182 5575 4.760530 TTACTGTTCATAGCAGGAGCAT 57.239 40.909 0.00 0.00 45.49 3.79
2183 5576 4.551702 TTTACTGTTCATAGCAGGAGCA 57.448 40.909 0.00 0.00 45.49 4.26
2184 5577 7.553881 TTATTTTACTGTTCATAGCAGGAGC 57.446 36.000 0.00 0.00 38.22 4.70
2252 5645 9.030301 GCACAACAAACATTTCTTAAAGTATGT 57.970 29.630 0.00 0.00 32.89 2.29
2253 5646 9.029243 TGCACAACAAACATTTCTTAAAGTATG 57.971 29.630 0.00 0.00 0.00 2.39
2254 5647 9.762933 ATGCACAACAAACATTTCTTAAAGTAT 57.237 25.926 0.00 0.00 0.00 2.12
2255 5648 9.029243 CATGCACAACAAACATTTCTTAAAGTA 57.971 29.630 0.00 0.00 0.00 2.24
2256 5649 7.465781 GCATGCACAACAAACATTTCTTAAAGT 60.466 33.333 14.21 0.00 0.00 2.66
2257 5650 6.847289 GCATGCACAACAAACATTTCTTAAAG 59.153 34.615 14.21 0.00 0.00 1.85
2258 5651 6.314648 TGCATGCACAACAAACATTTCTTAAA 59.685 30.769 18.46 0.00 0.00 1.52
2259 5652 5.814188 TGCATGCACAACAAACATTTCTTAA 59.186 32.000 18.46 0.00 0.00 1.85
2260 5653 5.354767 TGCATGCACAACAAACATTTCTTA 58.645 33.333 18.46 0.00 0.00 2.10
2261 5654 4.190001 TGCATGCACAACAAACATTTCTT 58.810 34.783 18.46 0.00 0.00 2.52
2262 5655 3.794717 TGCATGCACAACAAACATTTCT 58.205 36.364 18.46 0.00 0.00 2.52
2263 5656 4.533225 TTGCATGCACAACAAACATTTC 57.467 36.364 22.58 0.00 0.00 2.17
2264 5657 4.959596 TTTGCATGCACAACAAACATTT 57.040 31.818 22.58 0.00 0.00 2.32
2265 5658 4.959596 TTTTGCATGCACAACAAACATT 57.040 31.818 22.58 0.00 33.29 2.71
2266 5659 5.502153 AATTTTGCATGCACAACAAACAT 57.498 30.435 22.58 8.21 33.29 2.71
2267 5660 4.959596 AATTTTGCATGCACAACAAACA 57.040 31.818 22.58 0.00 33.29 2.83
2268 5661 5.330295 TGAAATTTTGCATGCACAACAAAC 58.670 33.333 22.58 12.75 33.29 2.93
2269 5662 5.556355 TGAAATTTTGCATGCACAACAAA 57.444 30.435 22.58 18.36 0.00 2.83
2270 5663 5.296035 TGATGAAATTTTGCATGCACAACAA 59.704 32.000 22.58 9.42 0.00 2.83
2271 5664 4.814771 TGATGAAATTTTGCATGCACAACA 59.185 33.333 22.58 15.52 0.00 3.33
2272 5665 5.141568 GTGATGAAATTTTGCATGCACAAC 58.858 37.500 22.58 13.02 0.00 3.32
2273 5666 4.084485 CGTGATGAAATTTTGCATGCACAA 60.084 37.500 22.58 21.53 0.00 3.33
2274 5667 3.429207 CGTGATGAAATTTTGCATGCACA 59.571 39.130 22.58 12.14 0.00 4.57
2275 5668 3.674281 TCGTGATGAAATTTTGCATGCAC 59.326 39.130 22.58 8.45 0.00 4.57
2276 5669 3.910648 TCGTGATGAAATTTTGCATGCA 58.089 36.364 18.46 18.46 0.00 3.96
2277 5670 4.907188 TTCGTGATGAAATTTTGCATGC 57.093 36.364 11.82 11.82 32.37 4.06
2287 5680 5.459768 CACCAATGTGATTTCGTGATGAAA 58.540 37.500 1.88 1.88 45.76 2.69
2288 5681 4.082841 CCACCAATGTGATTTCGTGATGAA 60.083 41.667 0.00 0.00 45.76 2.57
2289 5682 3.439825 CCACCAATGTGATTTCGTGATGA 59.560 43.478 0.00 0.00 45.76 2.92
2290 5683 3.439825 TCCACCAATGTGATTTCGTGATG 59.560 43.478 0.00 0.00 45.76 3.07
2291 5684 3.684908 TCCACCAATGTGATTTCGTGAT 58.315 40.909 0.00 0.00 45.76 3.06
2292 5685 3.073678 CTCCACCAATGTGATTTCGTGA 58.926 45.455 0.00 0.00 45.76 4.35
2293 5686 2.162208 CCTCCACCAATGTGATTTCGTG 59.838 50.000 0.00 0.00 45.76 4.35
2294 5687 2.224769 ACCTCCACCAATGTGATTTCGT 60.225 45.455 0.00 0.00 45.76 3.85
2295 5688 2.420022 GACCTCCACCAATGTGATTTCG 59.580 50.000 0.00 0.00 45.76 3.46
2296 5689 2.420022 CGACCTCCACCAATGTGATTTC 59.580 50.000 0.00 0.00 45.76 2.17
2297 5690 2.224769 ACGACCTCCACCAATGTGATTT 60.225 45.455 0.00 0.00 45.76 2.17
2298 5691 1.351017 ACGACCTCCACCAATGTGATT 59.649 47.619 0.00 0.00 45.76 2.57
2299 5692 0.984230 ACGACCTCCACCAATGTGAT 59.016 50.000 0.00 0.00 45.76 3.06
2300 5693 0.034756 CACGACCTCCACCAATGTGA 59.965 55.000 0.00 0.00 45.76 3.58
2301 5694 0.955428 CCACGACCTCCACCAATGTG 60.955 60.000 0.00 0.00 42.39 3.21
2302 5695 1.374947 CCACGACCTCCACCAATGT 59.625 57.895 0.00 0.00 0.00 2.71
2303 5696 2.040544 GCCACGACCTCCACCAATG 61.041 63.158 0.00 0.00 0.00 2.82
2304 5697 2.063015 TTGCCACGACCTCCACCAAT 62.063 55.000 0.00 0.00 0.00 3.16
2305 5698 2.272230 TTTGCCACGACCTCCACCAA 62.272 55.000 0.00 0.00 0.00 3.67
2306 5699 2.272230 TTTTGCCACGACCTCCACCA 62.272 55.000 0.00 0.00 0.00 4.17
2307 5700 1.104577 TTTTTGCCACGACCTCCACC 61.105 55.000 0.00 0.00 0.00 4.61
2308 5701 0.958822 ATTTTTGCCACGACCTCCAC 59.041 50.000 0.00 0.00 0.00 4.02
2309 5702 2.554893 GTTATTTTTGCCACGACCTCCA 59.445 45.455 0.00 0.00 0.00 3.86
2310 5703 2.554893 TGTTATTTTTGCCACGACCTCC 59.445 45.455 0.00 0.00 0.00 4.30
2311 5704 3.907894 TGTTATTTTTGCCACGACCTC 57.092 42.857 0.00 0.00 0.00 3.85
2312 5705 4.657436 TTTGTTATTTTTGCCACGACCT 57.343 36.364 0.00 0.00 0.00 3.85
2313 5706 5.463724 TGATTTTGTTATTTTTGCCACGACC 59.536 36.000 0.00 0.00 0.00 4.79
2314 5707 6.517914 TGATTTTGTTATTTTTGCCACGAC 57.482 33.333 0.00 0.00 0.00 4.34
2315 5708 7.539712 TTTGATTTTGTTATTTTTGCCACGA 57.460 28.000 0.00 0.00 0.00 4.35
2316 5709 6.356714 GCTTTGATTTTGTTATTTTTGCCACG 59.643 34.615 0.00 0.00 0.00 4.94
2317 5710 7.416817 AGCTTTGATTTTGTTATTTTTGCCAC 58.583 30.769 0.00 0.00 0.00 5.01
2318 5711 7.255070 GGAGCTTTGATTTTGTTATTTTTGCCA 60.255 33.333 0.00 0.00 0.00 4.92
2319 5712 7.077605 GGAGCTTTGATTTTGTTATTTTTGCC 58.922 34.615 0.00 0.00 0.00 4.52
2320 5713 7.638134 TGGAGCTTTGATTTTGTTATTTTTGC 58.362 30.769 0.00 0.00 0.00 3.68
2326 5719 9.139174 CGTATTTTGGAGCTTTGATTTTGTTAT 57.861 29.630 0.00 0.00 0.00 1.89
2327 5720 8.138712 ACGTATTTTGGAGCTTTGATTTTGTTA 58.861 29.630 0.00 0.00 0.00 2.41
2328 5721 6.983890 ACGTATTTTGGAGCTTTGATTTTGTT 59.016 30.769 0.00 0.00 0.00 2.83
2329 5722 6.512297 ACGTATTTTGGAGCTTTGATTTTGT 58.488 32.000 0.00 0.00 0.00 2.83
2330 5723 7.406799 AACGTATTTTGGAGCTTTGATTTTG 57.593 32.000 0.00 0.00 0.00 2.44
2331 5724 7.708752 TCAAACGTATTTTGGAGCTTTGATTTT 59.291 29.630 0.00 0.00 44.30 1.82
2332 5725 7.206687 TCAAACGTATTTTGGAGCTTTGATTT 58.793 30.769 0.00 0.00 44.30 2.17
2333 5726 6.744112 TCAAACGTATTTTGGAGCTTTGATT 58.256 32.000 0.00 0.00 44.30 2.57
2334 5727 6.325919 TCAAACGTATTTTGGAGCTTTGAT 57.674 33.333 0.00 0.00 44.30 2.57
2335 5728 5.759506 TCAAACGTATTTTGGAGCTTTGA 57.240 34.783 0.00 0.00 44.30 2.69
2336 5729 6.475402 ACTTTCAAACGTATTTTGGAGCTTTG 59.525 34.615 0.00 0.00 44.30 2.77
2337 5730 6.569780 ACTTTCAAACGTATTTTGGAGCTTT 58.430 32.000 0.00 0.00 44.30 3.51
2338 5731 6.144078 ACTTTCAAACGTATTTTGGAGCTT 57.856 33.333 0.00 0.00 44.30 3.74
2339 5732 5.767816 ACTTTCAAACGTATTTTGGAGCT 57.232 34.783 0.00 0.00 44.30 4.09
2340 5733 6.913673 TGTTACTTTCAAACGTATTTTGGAGC 59.086 34.615 0.00 0.00 44.30 4.70
2341 5734 9.458374 AATGTTACTTTCAAACGTATTTTGGAG 57.542 29.630 0.00 0.00 44.30 3.86
2342 5735 9.804758 AAATGTTACTTTCAAACGTATTTTGGA 57.195 25.926 0.00 0.00 44.30 3.53
2359 5752 9.965824 AGAACAAAATCGATTGAAAATGTTACT 57.034 25.926 12.25 12.72 34.38 2.24
2367 5760 9.587772 TGGTAAAAAGAACAAAATCGATTGAAA 57.412 25.926 12.25 0.00 34.38 2.69
2368 5761 9.757227 ATGGTAAAAAGAACAAAATCGATTGAA 57.243 25.926 12.25 0.00 34.38 2.69
2369 5762 9.190858 CATGGTAAAAAGAACAAAATCGATTGA 57.809 29.630 12.25 0.00 34.38 2.57
2370 5763 7.951565 GCATGGTAAAAAGAACAAAATCGATTG 59.048 33.333 12.25 4.12 36.37 2.67
2371 5764 7.117667 GGCATGGTAAAAAGAACAAAATCGATT 59.882 33.333 4.39 4.39 0.00 3.34
2372 5765 6.589907 GGCATGGTAAAAAGAACAAAATCGAT 59.410 34.615 0.00 0.00 0.00 3.59
2373 5766 5.923684 GGCATGGTAAAAAGAACAAAATCGA 59.076 36.000 0.00 0.00 0.00 3.59
2374 5767 5.925969 AGGCATGGTAAAAAGAACAAAATCG 59.074 36.000 0.00 0.00 0.00 3.34
2375 5768 7.095229 GGAAGGCATGGTAAAAAGAACAAAATC 60.095 37.037 0.00 0.00 0.00 2.17
2376 5769 6.710295 GGAAGGCATGGTAAAAAGAACAAAAT 59.290 34.615 0.00 0.00 0.00 1.82
2377 5770 6.052360 GGAAGGCATGGTAAAAAGAACAAAA 58.948 36.000 0.00 0.00 0.00 2.44
2378 5771 5.129485 TGGAAGGCATGGTAAAAAGAACAAA 59.871 36.000 0.00 0.00 0.00 2.83
2379 5772 4.651503 TGGAAGGCATGGTAAAAAGAACAA 59.348 37.500 0.00 0.00 0.00 2.83
2380 5773 4.038642 GTGGAAGGCATGGTAAAAAGAACA 59.961 41.667 0.00 0.00 0.00 3.18
2381 5774 4.556233 GTGGAAGGCATGGTAAAAAGAAC 58.444 43.478 0.00 0.00 0.00 3.01
2382 5775 3.576550 GGTGGAAGGCATGGTAAAAAGAA 59.423 43.478 0.00 0.00 0.00 2.52
2383 5776 3.161866 GGTGGAAGGCATGGTAAAAAGA 58.838 45.455 0.00 0.00 0.00 2.52
2384 5777 2.896685 TGGTGGAAGGCATGGTAAAAAG 59.103 45.455 0.00 0.00 0.00 2.27
2385 5778 2.964209 TGGTGGAAGGCATGGTAAAAA 58.036 42.857 0.00 0.00 0.00 1.94
2386 5779 2.685106 TGGTGGAAGGCATGGTAAAA 57.315 45.000 0.00 0.00 0.00 1.52
2387 5780 2.685106 TTGGTGGAAGGCATGGTAAA 57.315 45.000 0.00 0.00 0.00 2.01
2388 5781 2.225242 ACATTGGTGGAAGGCATGGTAA 60.225 45.455 0.00 0.00 0.00 2.85
2389 5782 1.357420 ACATTGGTGGAAGGCATGGTA 59.643 47.619 0.00 0.00 0.00 3.25
2390 5783 0.114954 ACATTGGTGGAAGGCATGGT 59.885 50.000 0.00 0.00 0.00 3.55
2391 5784 0.819582 GACATTGGTGGAAGGCATGG 59.180 55.000 0.00 0.00 0.00 3.66
2392 5785 1.548081 TGACATTGGTGGAAGGCATG 58.452 50.000 0.00 0.00 0.00 4.06
2393 5786 2.537633 ATGACATTGGTGGAAGGCAT 57.462 45.000 0.00 0.00 0.00 4.40
2394 5787 2.307496 AATGACATTGGTGGAAGGCA 57.693 45.000 0.00 0.00 0.00 4.75
2395 5788 2.562298 TGAAATGACATTGGTGGAAGGC 59.438 45.455 0.34 0.00 0.00 4.35
2413 5806 4.208873 GTGCTTGCAAAATTTCGTCATGAA 59.791 37.500 0.00 0.00 33.85 2.57
2414 5807 3.735240 GTGCTTGCAAAATTTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
2415 5808 3.490155 TGTGCTTGCAAAATTTCGTCATG 59.510 39.130 0.00 0.00 0.00 3.07
2416 5809 3.715495 TGTGCTTGCAAAATTTCGTCAT 58.285 36.364 0.00 0.00 0.00 3.06
2417 5810 3.156511 TGTGCTTGCAAAATTTCGTCA 57.843 38.095 0.00 0.00 0.00 4.35
2418 5811 3.305629 TGTTGTGCTTGCAAAATTTCGTC 59.694 39.130 0.00 0.00 0.00 4.20
2419 5812 3.257393 TGTTGTGCTTGCAAAATTTCGT 58.743 36.364 0.00 0.00 0.00 3.85
2420 5813 3.921969 TGTTGTGCTTGCAAAATTTCG 57.078 38.095 0.00 0.00 0.00 3.46
2421 5814 5.388944 TGTTTGTTGTGCTTGCAAAATTTC 58.611 33.333 0.00 0.00 34.47 2.17
2422 5815 5.368256 TGTTTGTTGTGCTTGCAAAATTT 57.632 30.435 0.00 0.00 34.47 1.82
2423 5816 5.564048 ATGTTTGTTGTGCTTGCAAAATT 57.436 30.435 0.00 0.00 34.47 1.82
2424 5817 5.564048 AATGTTTGTTGTGCTTGCAAAAT 57.436 30.435 0.00 0.00 34.47 1.82
2425 5818 5.180868 AGAAATGTTTGTTGTGCTTGCAAAA 59.819 32.000 0.00 0.00 34.47 2.44
2426 5819 4.694509 AGAAATGTTTGTTGTGCTTGCAAA 59.305 33.333 0.00 0.00 0.00 3.68
2427 5820 4.252073 AGAAATGTTTGTTGTGCTTGCAA 58.748 34.783 0.00 0.00 0.00 4.08
2428 5821 3.859443 AGAAATGTTTGTTGTGCTTGCA 58.141 36.364 0.00 0.00 0.00 4.08
2429 5822 4.863152 AAGAAATGTTTGTTGTGCTTGC 57.137 36.364 0.00 0.00 0.00 4.01
2430 5823 7.962917 ACTTTAAGAAATGTTTGTTGTGCTTG 58.037 30.769 0.00 0.00 0.00 4.01
2431 5824 9.816354 ATACTTTAAGAAATGTTTGTTGTGCTT 57.184 25.926 0.00 0.00 0.00 3.91
2432 5825 9.248291 CATACTTTAAGAAATGTTTGTTGTGCT 57.752 29.630 0.00 0.00 0.00 4.40
2433 5826 8.003784 GCATACTTTAAGAAATGTTTGTTGTGC 58.996 33.333 0.00 0.00 29.91 4.57
2434 5827 8.487176 GGCATACTTTAAGAAATGTTTGTTGTG 58.513 33.333 0.00 0.00 29.91 3.33
2435 5828 8.200792 TGGCATACTTTAAGAAATGTTTGTTGT 58.799 29.630 0.00 0.00 29.91 3.32
2436 5829 8.487176 GTGGCATACTTTAAGAAATGTTTGTTG 58.513 33.333 0.00 0.00 29.91 3.33
2437 5830 8.200792 TGTGGCATACTTTAAGAAATGTTTGTT 58.799 29.630 0.00 0.00 29.91 2.83
2438 5831 7.721402 TGTGGCATACTTTAAGAAATGTTTGT 58.279 30.769 0.00 0.00 29.91 2.83
2439 5832 8.586570 TTGTGGCATACTTTAAGAAATGTTTG 57.413 30.769 0.00 0.00 0.00 2.93
2440 5833 9.606631 TTTTGTGGCATACTTTAAGAAATGTTT 57.393 25.926 0.00 0.00 0.00 2.83
2441 5834 9.606631 TTTTTGTGGCATACTTTAAGAAATGTT 57.393 25.926 0.00 0.00 0.00 2.71
2502 5895 9.007901 GCTCCTGCTATGATCAGTAAAATAAAT 57.992 33.333 0.09 0.00 36.03 1.40
2503 5896 7.992608 TGCTCCTGCTATGATCAGTAAAATAAA 59.007 33.333 0.09 0.00 40.48 1.40
2504 5897 7.508687 TGCTCCTGCTATGATCAGTAAAATAA 58.491 34.615 0.09 0.00 40.48 1.40
2505 5898 7.066307 TGCTCCTGCTATGATCAGTAAAATA 57.934 36.000 0.09 0.00 40.48 1.40
2506 5899 5.933617 TGCTCCTGCTATGATCAGTAAAAT 58.066 37.500 0.09 0.00 40.48 1.82
2507 5900 5.357742 TGCTCCTGCTATGATCAGTAAAA 57.642 39.130 0.09 0.00 40.48 1.52
2508 5901 5.557576 ATGCTCCTGCTATGATCAGTAAA 57.442 39.130 0.09 0.00 40.48 2.01
2509 5902 6.438425 TCATATGCTCCTGCTATGATCAGTAA 59.562 38.462 0.09 0.00 40.48 2.24
2510 5903 5.954150 TCATATGCTCCTGCTATGATCAGTA 59.046 40.000 0.09 0.00 40.48 2.74
2511 5904 4.776308 TCATATGCTCCTGCTATGATCAGT 59.224 41.667 0.09 0.00 40.48 3.41
2512 5905 5.340439 TCATATGCTCCTGCTATGATCAG 57.660 43.478 0.09 0.00 40.48 2.90
2513 5906 4.382793 GCTCATATGCTCCTGCTATGATCA 60.383 45.833 0.00 0.00 37.96 2.92
2514 5907 4.121317 GCTCATATGCTCCTGCTATGATC 58.879 47.826 0.00 0.00 37.96 2.92
2515 5908 3.775866 AGCTCATATGCTCCTGCTATGAT 59.224 43.478 0.00 0.00 39.34 2.45
2516 5909 3.171528 AGCTCATATGCTCCTGCTATGA 58.828 45.455 0.00 0.00 39.34 2.15
2517 5910 3.613494 AGCTCATATGCTCCTGCTATG 57.387 47.619 0.00 0.00 39.34 2.23
2527 5920 4.327982 TTCTACACCTGAGCTCATATGC 57.672 45.455 18.63 0.00 0.00 3.14
2528 5921 5.911752 AGTTTCTACACCTGAGCTCATATG 58.088 41.667 18.63 19.73 0.00 1.78
2529 5922 5.069781 GGAGTTTCTACACCTGAGCTCATAT 59.930 44.000 18.63 5.36 32.81 1.78
2530 5923 4.402793 GGAGTTTCTACACCTGAGCTCATA 59.597 45.833 18.63 5.70 32.81 2.15
2531 5924 3.196685 GGAGTTTCTACACCTGAGCTCAT 59.803 47.826 18.63 4.63 32.81 2.90
2532 5925 2.563179 GGAGTTTCTACACCTGAGCTCA 59.437 50.000 17.19 17.19 32.81 4.26
2533 5926 2.563179 TGGAGTTTCTACACCTGAGCTC 59.437 50.000 6.82 6.82 36.15 4.09
2534 5927 2.300437 GTGGAGTTTCTACACCTGAGCT 59.700 50.000 1.03 0.00 39.27 4.09
2535 5928 2.689646 GTGGAGTTTCTACACCTGAGC 58.310 52.381 1.03 0.00 39.27 4.26
2536 5929 2.927014 GCGTGGAGTTTCTACACCTGAG 60.927 54.545 6.55 0.00 41.96 3.35
2537 5930 1.000506 GCGTGGAGTTTCTACACCTGA 59.999 52.381 6.55 0.00 41.96 3.86
2538 5931 1.000955 AGCGTGGAGTTTCTACACCTG 59.999 52.381 6.55 0.00 41.96 4.00
2539 5932 1.000955 CAGCGTGGAGTTTCTACACCT 59.999 52.381 6.55 2.87 41.96 4.00
2540 5933 1.429463 CAGCGTGGAGTTTCTACACC 58.571 55.000 6.55 0.87 41.96 4.16
2541 5934 1.270147 ACCAGCGTGGAGTTTCTACAC 60.270 52.381 10.46 2.35 40.96 2.90
2542 5935 1.045407 ACCAGCGTGGAGTTTCTACA 58.955 50.000 10.46 0.00 40.96 2.74
2543 5936 1.429463 CACCAGCGTGGAGTTTCTAC 58.571 55.000 10.46 0.00 40.96 2.59
2544 5937 3.906660 CACCAGCGTGGAGTTTCTA 57.093 52.632 10.46 0.00 40.96 2.10
2545 5938 4.779475 CACCAGCGTGGAGTTTCT 57.221 55.556 10.46 0.00 40.96 2.52
2553 5946 0.179084 AATATCGTCCCACCAGCGTG 60.179 55.000 0.00 0.00 39.91 5.34
2554 5947 1.405872 TAATATCGTCCCACCAGCGT 58.594 50.000 0.00 0.00 0.00 5.07
2555 5948 2.231478 AGATAATATCGTCCCACCAGCG 59.769 50.000 0.00 0.00 0.00 5.18
2556 5949 3.258372 TGAGATAATATCGTCCCACCAGC 59.742 47.826 0.00 0.00 0.00 4.85
2647 6042 6.104439 TCAGTCGAGTTAAGAATAGACGAC 57.896 41.667 0.00 0.00 45.36 4.34
2648 6043 6.922247 ATCAGTCGAGTTAAGAATAGACGA 57.078 37.500 0.00 0.00 34.21 4.20
2649 6044 7.972623 AAATCAGTCGAGTTAAGAATAGACG 57.027 36.000 0.00 0.00 34.21 4.18
2662 6057 9.341899 CTTAAACCCAAATAAAAATCAGTCGAG 57.658 33.333 0.00 0.00 0.00 4.04
2710 6105 1.710013 AATCAAGACACGTGGTAGCG 58.290 50.000 21.57 4.21 37.94 4.26
2750 6566 4.456911 TGGTCATTCAGCTTTCAGATTCAC 59.543 41.667 0.00 0.00 0.00 3.18
2811 6627 6.773976 ATCTTCAGGTTTTTCAGTGTTCAA 57.226 33.333 0.00 0.00 0.00 2.69
2844 6662 2.166664 AGTCTCGTTTATGCAGTCCTCC 59.833 50.000 0.00 0.00 0.00 4.30
2853 6671 4.315803 ACCACCTTTGAGTCTCGTTTATG 58.684 43.478 0.00 0.00 0.00 1.90
2884 6702 8.491950 GTCATCTTTCTTCAGTCTTTAGTGAAC 58.508 37.037 0.00 0.00 39.59 3.18
2887 6705 8.494347 CAAGTCATCTTTCTTCAGTCTTTAGTG 58.506 37.037 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.