Multiple sequence alignment - TraesCS5D01G444200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G444200 chr5D 100.000 2999 0 0 1 2999 495307558 495310556 0.000000e+00 5539.0
1 TraesCS5D01G444200 chr5D 95.699 465 14 2 1 459 205117537 205117073 0.000000e+00 743.0
2 TraesCS5D01G444200 chr5D 95.484 465 15 2 1 459 464904943 464904479 0.000000e+00 737.0
3 TraesCS5D01G444200 chr5D 95.484 465 15 2 1 459 554753742 554754206 0.000000e+00 737.0
4 TraesCS5D01G444200 chr5D 86.916 535 60 6 1474 1999 504102503 504101970 2.570000e-165 592.0
5 TraesCS5D01G444200 chr5D 76.338 355 70 10 1240 1593 356197743 356198084 8.540000e-41 178.0
6 TraesCS5D01G444200 chr5D 78.713 202 39 4 1241 1440 355796325 355796126 6.750000e-27 132.0
7 TraesCS5D01G444200 chr5B 93.554 1753 64 14 866 2572 611952746 611954495 0.000000e+00 2566.0
8 TraesCS5D01G444200 chr5B 79.198 524 79 14 1251 1771 251917775 251918271 1.330000e-88 337.0
9 TraesCS5D01G444200 chr5B 90.678 236 7 3 2573 2794 611954624 611954858 1.750000e-77 300.0
10 TraesCS5D01G444200 chr5B 88.776 196 17 2 2799 2994 611954915 611955105 5.000000e-58 235.0
11 TraesCS5D01G444200 chr5B 88.235 136 7 2 699 829 611952484 611952615 1.440000e-33 154.0
12 TraesCS5D01G444200 chr5B 100.000 28 0 0 834 861 611952632 611952659 5.000000e-03 52.8
13 TraesCS5D01G444200 chr5A 91.538 1820 95 28 699 2473 619454011 619455816 0.000000e+00 2453.0
14 TraesCS5D01G444200 chr5A 85.066 991 112 21 1009 1999 631859163 631858209 0.000000e+00 977.0
15 TraesCS5D01G444200 chr5A 77.591 357 66 10 1240 1595 457894205 457894548 1.410000e-48 204.0
16 TraesCS5D01G444200 chr5A 77.419 186 36 5 1243 1425 457515000 457515182 4.090000e-19 106.0
17 TraesCS5D01G444200 chr2D 92.365 668 43 4 1 661 428558119 428558785 0.000000e+00 944.0
18 TraesCS5D01G444200 chr2D 82.129 996 130 23 1008 1994 593524094 593523138 0.000000e+00 809.0
19 TraesCS5D01G444200 chr2D 94.521 219 11 1 450 667 517092895 517093113 1.330000e-88 337.0
20 TraesCS5D01G444200 chr2D 93.363 226 13 2 450 674 54602279 54602055 1.720000e-87 333.0
21 TraesCS5D01G444200 chr2D 78.534 191 32 9 1243 1428 87762439 87762625 1.890000e-22 117.0
22 TraesCS5D01G444200 chr2B 82.306 1006 127 34 1001 1994 719984114 719983148 0.000000e+00 824.0
23 TraesCS5D01G444200 chr2A 82.070 976 134 21 1026 1994 728418667 728417726 0.000000e+00 795.0
24 TraesCS5D01G444200 chr6D 95.914 465 13 2 1 459 131932711 131932247 0.000000e+00 749.0
25 TraesCS5D01G444200 chr6D 95.484 465 15 2 1 459 14595876 14595412 0.000000e+00 737.0
26 TraesCS5D01G444200 chr7D 95.484 465 15 2 1 459 255781727 255782191 0.000000e+00 737.0
27 TraesCS5D01G444200 chr7D 95.484 465 15 2 1 459 554470701 554471165 0.000000e+00 737.0
28 TraesCS5D01G444200 chr7D 96.209 211 7 1 450 659 98404217 98404427 7.960000e-91 344.0
29 TraesCS5D01G444200 chr7D 94.931 217 9 2 450 665 205948867 205949082 3.700000e-89 339.0
30 TraesCS5D01G444200 chr3D 95.484 465 15 2 1 459 475129140 475128676 0.000000e+00 737.0
31 TraesCS5D01G444200 chr3D 96.209 211 7 1 450 659 96415113 96415323 7.960000e-91 344.0
32 TraesCS5D01G444200 chr3D 93.363 226 13 2 450 674 586181909 586182133 1.720000e-87 333.0
33 TraesCS5D01G444200 chr7A 95.794 214 8 1 450 662 19749969 19750182 7.960000e-91 344.0
34 TraesCS5D01G444200 chr1D 95.775 213 8 1 450 661 460311496 460311284 2.860000e-90 342.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G444200 chr5D 495307558 495310556 2998 False 5539.00 5539 100.0000 1 2999 1 chr5D.!!$F2 2998
1 TraesCS5D01G444200 chr5D 504101970 504102503 533 True 592.00 592 86.9160 1474 1999 1 chr5D.!!$R4 525
2 TraesCS5D01G444200 chr5B 611952484 611955105 2621 False 661.56 2566 92.2486 699 2994 5 chr5B.!!$F2 2295
3 TraesCS5D01G444200 chr5A 619454011 619455816 1805 False 2453.00 2453 91.5380 699 2473 1 chr5A.!!$F3 1774
4 TraesCS5D01G444200 chr5A 631858209 631859163 954 True 977.00 977 85.0660 1009 1999 1 chr5A.!!$R1 990
5 TraesCS5D01G444200 chr2D 428558119 428558785 666 False 944.00 944 92.3650 1 661 1 chr2D.!!$F2 660
6 TraesCS5D01G444200 chr2D 593523138 593524094 956 True 809.00 809 82.1290 1008 1994 1 chr2D.!!$R2 986
7 TraesCS5D01G444200 chr2B 719983148 719984114 966 True 824.00 824 82.3060 1001 1994 1 chr2B.!!$R1 993
8 TraesCS5D01G444200 chr2A 728417726 728418667 941 True 795.00 795 82.0700 1026 1994 1 chr2A.!!$R1 968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 553 0.032952 TTGTTGCTTAGACGTCGGCT 59.967 50.0 23.47 5.6 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2636 0.524862 AAGCAAGCGCAGATTTCAGG 59.475 50.0 11.47 0.0 42.27 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.354103 CGTTTCTCTCTTGGGAGCATCA 60.354 50.000 0.00 0.00 39.31 3.07
89 90 1.078567 CTGGAAGTCAGAGGCAGGC 60.079 63.158 0.00 0.00 46.18 4.85
140 146 0.465097 GGTGGAGATGTCATGCCTGG 60.465 60.000 0.00 0.00 0.00 4.45
169 175 0.097674 GCTACGCTTTGTCATGCCTG 59.902 55.000 0.00 0.00 0.00 4.85
173 179 1.503542 GCTTTGTCATGCCTGGTCG 59.496 57.895 0.00 0.00 0.00 4.79
257 263 1.134280 AGCATGGCACTGAGGTGTATC 60.134 52.381 0.00 0.00 44.65 2.24
258 264 1.407299 GCATGGCACTGAGGTGTATCA 60.407 52.381 0.00 0.00 44.65 2.15
264 270 3.352447 CTGAGGTGTATCAGTGGCG 57.648 57.895 0.00 0.00 41.52 5.69
265 271 0.817654 CTGAGGTGTATCAGTGGCGA 59.182 55.000 0.00 0.00 41.52 5.54
266 272 0.530744 TGAGGTGTATCAGTGGCGAC 59.469 55.000 0.00 0.00 0.00 5.19
267 273 0.179108 GAGGTGTATCAGTGGCGACC 60.179 60.000 0.00 0.00 0.00 4.79
268 274 1.518572 GGTGTATCAGTGGCGACCG 60.519 63.158 0.00 0.00 0.00 4.79
269 275 2.165301 GTGTATCAGTGGCGACCGC 61.165 63.158 5.75 5.75 41.06 5.68
270 276 2.954868 GTATCAGTGGCGACCGCG 60.955 66.667 8.36 0.00 43.06 6.46
271 277 3.135457 TATCAGTGGCGACCGCGA 61.135 61.111 8.23 1.16 43.06 5.87
285 291 3.038417 GCGACGTGCTCAGCTGTT 61.038 61.111 14.67 0.00 41.73 3.16
286 292 2.598632 GCGACGTGCTCAGCTGTTT 61.599 57.895 14.67 0.00 41.73 2.83
287 293 1.202568 CGACGTGCTCAGCTGTTTG 59.797 57.895 14.67 6.68 0.00 2.93
288 294 1.082496 GACGTGCTCAGCTGTTTGC 60.082 57.895 14.67 16.39 43.29 3.68
298 304 4.093952 CTGTTTGCGCGCAGGGAG 62.094 66.667 34.25 24.52 46.37 4.30
308 314 3.415087 GCAGGGAGGAGGTGCCAT 61.415 66.667 0.00 0.00 39.84 4.40
309 315 2.988839 GCAGGGAGGAGGTGCCATT 61.989 63.158 0.00 0.00 39.84 3.16
310 316 1.077212 CAGGGAGGAGGTGCCATTG 60.077 63.158 0.00 0.00 39.84 2.82
311 317 2.276740 GGGAGGAGGTGCCATTGG 59.723 66.667 0.00 0.00 40.02 3.16
312 318 2.276740 GGAGGAGGTGCCATTGGG 59.723 66.667 4.53 0.00 40.02 4.12
333 339 4.771356 CGTGGTGGCGTCGACGAT 62.771 66.667 39.74 0.00 40.81 3.73
334 340 2.486504 GTGGTGGCGTCGACGATA 59.513 61.111 39.74 24.35 43.02 2.92
335 341 1.585521 GTGGTGGCGTCGACGATAG 60.586 63.158 39.74 13.08 43.02 2.08
336 342 2.654404 GGTGGCGTCGACGATAGC 60.654 66.667 39.74 29.51 43.02 2.97
337 343 2.101575 GTGGCGTCGACGATAGCA 59.898 61.111 39.74 10.99 43.02 3.49
338 344 1.939785 GTGGCGTCGACGATAGCAG 60.940 63.158 39.74 11.11 43.02 4.24
339 345 2.110352 TGGCGTCGACGATAGCAGA 61.110 57.895 39.74 12.33 43.02 4.26
340 346 1.654743 GGCGTCGACGATAGCAGAC 60.655 63.158 39.74 19.50 43.02 3.51
341 347 1.654743 GCGTCGACGATAGCAGACC 60.655 63.158 39.74 15.89 41.02 3.85
342 348 1.367782 CGTCGACGATAGCAGACCG 60.368 63.158 33.35 0.00 41.02 4.79
343 349 1.759293 CGTCGACGATAGCAGACCGA 61.759 60.000 33.35 0.00 41.02 4.69
344 350 0.042013 GTCGACGATAGCAGACCGAG 60.042 60.000 0.00 0.00 39.09 4.63
345 351 1.369448 CGACGATAGCAGACCGAGC 60.369 63.158 0.00 0.00 42.67 5.03
346 352 1.728069 GACGATAGCAGACCGAGCA 59.272 57.895 0.00 0.00 42.67 4.26
347 353 0.100682 GACGATAGCAGACCGAGCAA 59.899 55.000 0.00 0.00 42.67 3.91
348 354 0.101399 ACGATAGCAGACCGAGCAAG 59.899 55.000 0.00 0.00 42.67 4.01
349 355 0.596083 CGATAGCAGACCGAGCAAGG 60.596 60.000 0.00 0.00 37.30 3.61
351 357 0.905357 ATAGCAGACCGAGCAAGGTT 59.095 50.000 4.58 0.00 46.09 3.50
352 358 0.037326 TAGCAGACCGAGCAAGGTTG 60.037 55.000 4.58 6.52 46.09 3.77
353 359 1.301716 GCAGACCGAGCAAGGTTGA 60.302 57.895 4.58 0.00 46.09 3.18
354 360 0.674895 GCAGACCGAGCAAGGTTGAT 60.675 55.000 4.58 0.00 46.09 2.57
355 361 1.081892 CAGACCGAGCAAGGTTGATG 58.918 55.000 4.58 1.84 46.09 3.07
356 362 0.674895 AGACCGAGCAAGGTTGATGC 60.675 55.000 4.58 0.00 46.09 3.91
357 363 0.955428 GACCGAGCAAGGTTGATGCA 60.955 55.000 4.58 0.00 46.09 3.96
358 364 0.322816 ACCGAGCAAGGTTGATGCAT 60.323 50.000 0.00 0.00 46.22 3.96
359 365 0.379669 CCGAGCAAGGTTGATGCATC 59.620 55.000 20.14 20.14 46.22 3.91
360 366 1.089112 CGAGCAAGGTTGATGCATCA 58.911 50.000 25.42 25.42 46.22 3.07
361 367 1.063616 CGAGCAAGGTTGATGCATCAG 59.936 52.381 27.25 17.31 46.22 2.90
362 368 2.089980 GAGCAAGGTTGATGCATCAGT 58.910 47.619 27.25 14.71 46.22 3.41
363 369 3.273434 GAGCAAGGTTGATGCATCAGTA 58.727 45.455 27.25 13.01 46.22 2.74
364 370 3.012518 AGCAAGGTTGATGCATCAGTAC 58.987 45.455 27.25 22.85 46.22 2.73
365 371 2.749076 GCAAGGTTGATGCATCAGTACA 59.251 45.455 27.25 11.89 43.29 2.90
366 372 3.181503 GCAAGGTTGATGCATCAGTACAG 60.182 47.826 27.25 19.16 43.29 2.74
367 373 3.988976 AGGTTGATGCATCAGTACAGT 57.011 42.857 27.25 13.13 38.19 3.55
368 374 4.292186 AGGTTGATGCATCAGTACAGTT 57.708 40.909 27.25 11.67 38.19 3.16
369 375 4.256920 AGGTTGATGCATCAGTACAGTTC 58.743 43.478 27.25 12.07 38.19 3.01
370 376 4.019860 AGGTTGATGCATCAGTACAGTTCT 60.020 41.667 27.25 13.87 38.19 3.01
371 377 4.093998 GGTTGATGCATCAGTACAGTTCTG 59.906 45.833 27.25 0.70 38.19 3.02
372 378 4.806640 TGATGCATCAGTACAGTTCTGA 57.193 40.909 25.42 11.91 44.37 3.27
373 379 5.151297 TGATGCATCAGTACAGTTCTGAA 57.849 39.130 25.42 0.00 43.65 3.02
374 380 5.173664 TGATGCATCAGTACAGTTCTGAAG 58.826 41.667 25.42 10.42 43.65 3.02
375 381 4.871933 TGCATCAGTACAGTTCTGAAGA 57.128 40.909 13.36 0.00 43.65 2.87
376 382 5.411831 TGCATCAGTACAGTTCTGAAGAT 57.588 39.130 13.36 0.00 43.65 2.40
377 383 5.173664 TGCATCAGTACAGTTCTGAAGATG 58.826 41.667 13.36 8.91 43.65 2.90
378 384 4.569966 GCATCAGTACAGTTCTGAAGATGG 59.430 45.833 13.36 3.74 43.65 3.51
379 385 5.625426 GCATCAGTACAGTTCTGAAGATGGA 60.625 44.000 13.36 0.97 43.65 3.41
380 386 5.651387 TCAGTACAGTTCTGAAGATGGAG 57.349 43.478 7.40 0.00 38.71 3.86
381 387 4.081972 TCAGTACAGTTCTGAAGATGGAGC 60.082 45.833 7.40 0.00 38.71 4.70
382 388 2.376808 ACAGTTCTGAAGATGGAGCG 57.623 50.000 6.83 0.00 0.00 5.03
383 389 1.066573 ACAGTTCTGAAGATGGAGCGG 60.067 52.381 6.83 0.00 0.00 5.52
384 390 1.066573 CAGTTCTGAAGATGGAGCGGT 60.067 52.381 0.00 0.00 0.00 5.68
385 391 1.066573 AGTTCTGAAGATGGAGCGGTG 60.067 52.381 0.00 0.00 0.00 4.94
386 392 0.250234 TTCTGAAGATGGAGCGGTGG 59.750 55.000 0.00 0.00 0.00 4.61
387 393 1.817099 CTGAAGATGGAGCGGTGGC 60.817 63.158 0.00 0.00 40.37 5.01
388 394 2.268920 GAAGATGGAGCGGTGGCA 59.731 61.111 0.00 0.00 43.41 4.92
389 395 1.817099 GAAGATGGAGCGGTGGCAG 60.817 63.158 0.00 0.00 43.41 4.85
390 396 2.527951 GAAGATGGAGCGGTGGCAGT 62.528 60.000 0.00 0.00 43.41 4.40
391 397 2.045926 GATGGAGCGGTGGCAGTT 60.046 61.111 0.00 0.00 43.41 3.16
392 398 2.360350 ATGGAGCGGTGGCAGTTG 60.360 61.111 0.00 0.00 43.41 3.16
393 399 3.925630 ATGGAGCGGTGGCAGTTGG 62.926 63.158 0.00 0.00 43.41 3.77
414 420 3.838271 CGGCGGCCTCTAAGAGCA 61.838 66.667 18.34 0.00 0.00 4.26
415 421 2.202946 GGCGGCCTCTAAGAGCAC 60.203 66.667 12.87 0.00 0.00 4.40
416 422 2.583593 GCGGCCTCTAAGAGCACG 60.584 66.667 0.00 0.00 33.07 5.34
417 423 2.583593 CGGCCTCTAAGAGCACGC 60.584 66.667 0.00 0.00 0.00 5.34
418 424 2.579201 GGCCTCTAAGAGCACGCA 59.421 61.111 0.00 0.00 0.00 5.24
419 425 1.520342 GGCCTCTAAGAGCACGCAG 60.520 63.158 0.00 0.00 0.00 5.18
420 426 1.520342 GCCTCTAAGAGCACGCAGG 60.520 63.158 0.00 0.00 0.00 4.85
421 427 1.949847 GCCTCTAAGAGCACGCAGGA 61.950 60.000 0.00 0.00 0.00 3.86
422 428 0.179124 CCTCTAAGAGCACGCAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
423 429 0.179124 CTCTAAGAGCACGCAGGACC 60.179 60.000 0.00 0.00 0.00 4.46
424 430 0.898326 TCTAAGAGCACGCAGGACCA 60.898 55.000 0.00 0.00 0.00 4.02
425 431 0.459237 CTAAGAGCACGCAGGACCAG 60.459 60.000 0.00 0.00 0.00 4.00
426 432 1.185618 TAAGAGCACGCAGGACCAGT 61.186 55.000 0.00 0.00 0.00 4.00
427 433 2.721971 AAGAGCACGCAGGACCAGTG 62.722 60.000 9.55 9.55 38.77 3.66
428 434 3.521529 GAGCACGCAGGACCAGTGT 62.522 63.158 13.75 6.91 38.10 3.55
430 436 2.108976 CACGCAGGACCAGTGTGT 59.891 61.111 19.48 8.09 41.32 3.72
431 437 1.365999 CACGCAGGACCAGTGTGTA 59.634 57.895 19.48 0.00 41.32 2.90
432 438 0.944311 CACGCAGGACCAGTGTGTAC 60.944 60.000 19.48 0.00 41.32 2.90
433 439 1.374252 CGCAGGACCAGTGTGTACC 60.374 63.158 0.00 0.00 0.00 3.34
434 440 1.003718 GCAGGACCAGTGTGTACCC 60.004 63.158 0.00 0.00 0.00 3.69
435 441 1.677552 CAGGACCAGTGTGTACCCC 59.322 63.158 0.00 0.00 0.00 4.95
436 442 1.125093 CAGGACCAGTGTGTACCCCA 61.125 60.000 0.00 0.00 0.00 4.96
437 443 0.836400 AGGACCAGTGTGTACCCCAG 60.836 60.000 0.00 0.00 0.00 4.45
438 444 0.834687 GGACCAGTGTGTACCCCAGA 60.835 60.000 0.00 0.00 0.00 3.86
439 445 0.320697 GACCAGTGTGTACCCCAGAC 59.679 60.000 0.00 0.00 37.60 3.51
440 446 1.125711 ACCAGTGTGTACCCCAGACC 61.126 60.000 0.00 0.00 38.07 3.85
441 447 1.677552 CAGTGTGTACCCCAGACCC 59.322 63.158 0.00 0.00 38.07 4.46
442 448 1.911766 AGTGTGTACCCCAGACCCG 60.912 63.158 0.00 0.00 38.07 5.28
443 449 2.605295 TGTGTACCCCAGACCCGG 60.605 66.667 0.00 0.00 0.00 5.73
444 450 4.091939 GTGTACCCCAGACCCGGC 62.092 72.222 0.00 0.00 0.00 6.13
445 451 4.642488 TGTACCCCAGACCCGGCA 62.642 66.667 0.00 0.00 0.00 5.69
446 452 3.324108 GTACCCCAGACCCGGCAA 61.324 66.667 0.00 0.00 0.00 4.52
447 453 3.006728 TACCCCAGACCCGGCAAG 61.007 66.667 0.00 0.00 0.00 4.01
448 454 3.857521 TACCCCAGACCCGGCAAGT 62.858 63.158 0.00 0.00 0.00 3.16
449 455 4.722700 CCCCAGACCCGGCAAGTG 62.723 72.222 0.00 0.00 0.00 3.16
450 456 4.722700 CCCAGACCCGGCAAGTGG 62.723 72.222 0.00 0.00 0.00 4.00
452 458 4.335647 CAGACCCGGCAAGTGGCT 62.336 66.667 0.00 0.00 44.01 4.75
453 459 2.606519 AGACCCGGCAAGTGGCTA 60.607 61.111 0.00 0.00 44.01 3.93
454 460 2.125106 GACCCGGCAAGTGGCTAG 60.125 66.667 0.00 0.00 44.01 3.42
455 461 3.682292 GACCCGGCAAGTGGCTAGG 62.682 68.421 0.00 6.31 44.01 3.02
456 462 3.717294 CCCGGCAAGTGGCTAGGT 61.717 66.667 0.00 0.00 44.01 3.08
457 463 2.351276 CCGGCAAGTGGCTAGGTT 59.649 61.111 3.18 0.00 44.01 3.50
458 464 2.040544 CCGGCAAGTGGCTAGGTTG 61.041 63.158 3.18 0.00 44.01 3.77
459 465 2.690778 CGGCAAGTGGCTAGGTTGC 61.691 63.158 8.20 8.20 44.79 4.17
460 466 2.690778 GGCAAGTGGCTAGGTTGCG 61.691 63.158 10.00 0.00 46.16 4.85
461 467 1.671054 GCAAGTGGCTAGGTTGCGA 60.671 57.895 1.86 0.00 37.44 5.10
462 468 1.026718 GCAAGTGGCTAGGTTGCGAT 61.027 55.000 1.86 0.00 37.44 4.58
463 469 0.729116 CAAGTGGCTAGGTTGCGATG 59.271 55.000 0.00 0.00 0.00 3.84
464 470 0.324943 AAGTGGCTAGGTTGCGATGT 59.675 50.000 0.00 0.00 0.00 3.06
465 471 0.108138 AGTGGCTAGGTTGCGATGTC 60.108 55.000 0.00 0.00 0.00 3.06
466 472 0.108138 GTGGCTAGGTTGCGATGTCT 60.108 55.000 0.00 0.00 0.00 3.41
467 473 0.108186 TGGCTAGGTTGCGATGTCTG 60.108 55.000 0.00 0.00 0.00 3.51
468 474 0.108138 GGCTAGGTTGCGATGTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
469 475 1.676014 GGCTAGGTTGCGATGTCTGTT 60.676 52.381 0.00 0.00 0.00 3.16
470 476 2.076863 GCTAGGTTGCGATGTCTGTTT 58.923 47.619 0.00 0.00 0.00 2.83
471 477 2.159653 GCTAGGTTGCGATGTCTGTTTG 60.160 50.000 0.00 0.00 0.00 2.93
472 478 1.238439 AGGTTGCGATGTCTGTTTGG 58.762 50.000 0.00 0.00 0.00 3.28
473 479 0.951558 GGTTGCGATGTCTGTTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
474 480 2.147958 GGTTGCGATGTCTGTTTGGTA 58.852 47.619 0.00 0.00 0.00 3.25
475 481 2.747446 GGTTGCGATGTCTGTTTGGTAT 59.253 45.455 0.00 0.00 0.00 2.73
476 482 3.190535 GGTTGCGATGTCTGTTTGGTATT 59.809 43.478 0.00 0.00 0.00 1.89
477 483 4.393680 GGTTGCGATGTCTGTTTGGTATTA 59.606 41.667 0.00 0.00 0.00 0.98
478 484 5.447279 GGTTGCGATGTCTGTTTGGTATTAG 60.447 44.000 0.00 0.00 0.00 1.73
479 485 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
480 486 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
481 487 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
482 488 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
483 489 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
484 490 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
485 491 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
486 492 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
487 493 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
488 494 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
489 495 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
490 496 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
491 497 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
492 498 2.237392 GGTATTAGGCCCAGGCTATCTG 59.763 54.545 8.89 0.00 40.30 2.90
493 499 0.695347 ATTAGGCCCAGGCTATCTGC 59.305 55.000 8.89 0.00 40.30 4.26
494 500 1.758440 TTAGGCCCAGGCTATCTGCG 61.758 60.000 8.89 0.00 40.30 5.18
501 507 2.281139 GGCTATCTGCGCCCCTTC 60.281 66.667 4.18 0.00 44.05 3.46
502 508 2.505982 GCTATCTGCGCCCCTTCA 59.494 61.111 4.18 0.00 0.00 3.02
503 509 1.072159 GCTATCTGCGCCCCTTCAT 59.928 57.895 4.18 0.00 0.00 2.57
504 510 0.952984 GCTATCTGCGCCCCTTCATC 60.953 60.000 4.18 0.00 0.00 2.92
505 511 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
506 512 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
507 513 0.749454 ATCTGCGCCCCTTCATCAAC 60.749 55.000 4.18 0.00 0.00 3.18
508 514 1.377725 CTGCGCCCCTTCATCAACT 60.378 57.895 4.18 0.00 0.00 3.16
509 515 1.651240 CTGCGCCCCTTCATCAACTG 61.651 60.000 4.18 0.00 0.00 3.16
510 516 2.409870 GCGCCCCTTCATCAACTGG 61.410 63.158 0.00 0.00 0.00 4.00
511 517 1.299648 CGCCCCTTCATCAACTGGA 59.700 57.895 0.00 0.00 0.00 3.86
512 518 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.000 0.00 0.00 36.39 3.41
513 519 1.140852 CGCCCCTTCATCAACTGGATA 59.859 52.381 0.00 0.00 33.95 2.59
514 520 2.808202 CGCCCCTTCATCAACTGGATAG 60.808 54.545 0.00 0.00 33.95 2.08
515 521 2.487986 GCCCCTTCATCAACTGGATAGG 60.488 54.545 0.00 0.00 33.95 2.57
516 522 2.780010 CCCCTTCATCAACTGGATAGGT 59.220 50.000 0.00 0.00 32.05 3.08
517 523 3.434167 CCCCTTCATCAACTGGATAGGTG 60.434 52.174 0.00 0.00 43.21 4.00
518 524 3.200825 CCCTTCATCAACTGGATAGGTGT 59.799 47.826 0.00 0.00 42.42 4.16
519 525 4.408921 CCCTTCATCAACTGGATAGGTGTA 59.591 45.833 0.00 0.00 42.42 2.90
520 526 5.453903 CCCTTCATCAACTGGATAGGTGTAG 60.454 48.000 0.00 0.00 42.42 2.74
521 527 4.672587 TCATCAACTGGATAGGTGTAGC 57.327 45.455 0.00 0.00 42.42 3.58
522 528 3.068165 TCATCAACTGGATAGGTGTAGCG 59.932 47.826 0.00 0.00 42.42 4.26
523 529 2.730382 TCAACTGGATAGGTGTAGCGA 58.270 47.619 0.00 0.00 42.42 4.93
524 530 3.296854 TCAACTGGATAGGTGTAGCGAT 58.703 45.455 0.00 0.00 42.42 4.58
525 531 4.466827 TCAACTGGATAGGTGTAGCGATA 58.533 43.478 0.00 0.00 42.42 2.92
526 532 4.519350 TCAACTGGATAGGTGTAGCGATAG 59.481 45.833 0.00 0.00 42.42 2.08
527 533 4.101645 ACTGGATAGGTGTAGCGATAGT 57.898 45.455 0.00 0.00 39.35 2.12
528 534 4.471548 ACTGGATAGGTGTAGCGATAGTT 58.528 43.478 0.00 0.00 39.35 2.24
529 535 4.894114 ACTGGATAGGTGTAGCGATAGTTT 59.106 41.667 0.00 0.00 39.35 2.66
530 536 5.196341 TGGATAGGTGTAGCGATAGTTTG 57.804 43.478 0.00 0.00 39.35 2.93
531 537 4.647853 TGGATAGGTGTAGCGATAGTTTGT 59.352 41.667 0.00 0.00 39.35 2.83
532 538 5.128171 TGGATAGGTGTAGCGATAGTTTGTT 59.872 40.000 0.00 0.00 39.35 2.83
533 539 5.462398 GGATAGGTGTAGCGATAGTTTGTTG 59.538 44.000 0.00 0.00 39.35 3.33
534 540 3.000727 AGGTGTAGCGATAGTTTGTTGC 58.999 45.455 0.00 0.00 39.35 4.17
535 541 3.000727 GGTGTAGCGATAGTTTGTTGCT 58.999 45.455 0.00 0.00 39.57 3.91
536 542 3.435671 GGTGTAGCGATAGTTTGTTGCTT 59.564 43.478 0.00 0.00 37.49 3.91
537 543 4.628333 GGTGTAGCGATAGTTTGTTGCTTA 59.372 41.667 0.00 0.00 37.49 3.09
538 544 5.220416 GGTGTAGCGATAGTTTGTTGCTTAG 60.220 44.000 0.00 0.00 37.49 2.18
539 545 5.575606 GTGTAGCGATAGTTTGTTGCTTAGA 59.424 40.000 0.00 0.00 37.49 2.10
540 546 5.575606 TGTAGCGATAGTTTGTTGCTTAGAC 59.424 40.000 0.00 0.00 37.49 2.59
541 547 3.612860 AGCGATAGTTTGTTGCTTAGACG 59.387 43.478 0.00 0.00 32.40 4.18
542 548 3.367025 GCGATAGTTTGTTGCTTAGACGT 59.633 43.478 0.00 0.00 39.35 4.34
543 549 4.490479 GCGATAGTTTGTTGCTTAGACGTC 60.490 45.833 7.70 7.70 39.35 4.34
544 550 4.258899 CGATAGTTTGTTGCTTAGACGTCG 60.259 45.833 10.46 0.00 0.00 5.12
545 551 2.132762 AGTTTGTTGCTTAGACGTCGG 58.867 47.619 10.46 5.91 0.00 4.79
546 552 0.863144 TTTGTTGCTTAGACGTCGGC 59.137 50.000 19.01 19.01 0.00 5.54
547 553 0.032952 TTGTTGCTTAGACGTCGGCT 59.967 50.000 23.47 5.60 0.00 5.52
548 554 0.032952 TGTTGCTTAGACGTCGGCTT 59.967 50.000 23.47 6.53 0.00 4.35
549 555 1.145803 GTTGCTTAGACGTCGGCTTT 58.854 50.000 23.47 6.21 0.00 3.51
550 556 2.288334 TGTTGCTTAGACGTCGGCTTTA 60.288 45.455 23.47 5.33 0.00 1.85
551 557 2.273370 TGCTTAGACGTCGGCTTTAG 57.727 50.000 23.47 5.68 0.00 1.85
552 558 1.542915 TGCTTAGACGTCGGCTTTAGT 59.457 47.619 23.47 4.30 0.00 2.24
553 559 2.183636 GCTTAGACGTCGGCTTTAGTC 58.816 52.381 5.59 0.00 0.00 2.59
554 560 2.159407 GCTTAGACGTCGGCTTTAGTCT 60.159 50.000 5.59 1.05 44.90 3.24
555 561 3.672781 GCTTAGACGTCGGCTTTAGTCTT 60.673 47.826 5.59 0.00 42.99 3.01
556 562 4.437930 GCTTAGACGTCGGCTTTAGTCTTA 60.438 45.833 5.59 0.00 42.99 2.10
557 563 3.484334 AGACGTCGGCTTTAGTCTTAC 57.516 47.619 10.46 0.00 40.64 2.34
558 564 3.080319 AGACGTCGGCTTTAGTCTTACT 58.920 45.455 10.46 0.00 40.64 2.24
559 565 3.119919 AGACGTCGGCTTTAGTCTTACTG 60.120 47.826 10.46 0.00 40.64 2.74
560 566 2.555757 ACGTCGGCTTTAGTCTTACTGT 59.444 45.455 0.00 0.00 0.00 3.55
561 567 3.005155 ACGTCGGCTTTAGTCTTACTGTT 59.995 43.478 0.00 0.00 0.00 3.16
562 568 3.364023 CGTCGGCTTTAGTCTTACTGTTG 59.636 47.826 0.00 0.00 0.00 3.33
563 569 4.304939 GTCGGCTTTAGTCTTACTGTTGT 58.695 43.478 0.00 0.00 0.00 3.32
564 570 5.464168 GTCGGCTTTAGTCTTACTGTTGTA 58.536 41.667 0.00 0.00 0.00 2.41
565 571 6.098017 GTCGGCTTTAGTCTTACTGTTGTAT 58.902 40.000 0.00 0.00 0.00 2.29
566 572 6.034683 GTCGGCTTTAGTCTTACTGTTGTATG 59.965 42.308 0.00 0.00 0.00 2.39
567 573 6.071784 TCGGCTTTAGTCTTACTGTTGTATGA 60.072 38.462 0.00 0.00 32.61 2.15
568 574 6.034683 CGGCTTTAGTCTTACTGTTGTATGAC 59.965 42.308 11.70 11.70 45.97 3.06
576 582 8.676454 GTCTTACTGTTGTATGACTCTGTAAG 57.324 38.462 12.12 16.10 44.06 2.34
577 583 7.755822 GTCTTACTGTTGTATGACTCTGTAAGG 59.244 40.741 18.74 9.99 44.06 2.69
578 584 7.450634 TCTTACTGTTGTATGACTCTGTAAGGT 59.549 37.037 18.74 0.00 37.36 3.50
579 585 6.026947 ACTGTTGTATGACTCTGTAAGGTC 57.973 41.667 0.00 0.00 35.54 3.85
580 586 5.775701 ACTGTTGTATGACTCTGTAAGGTCT 59.224 40.000 0.00 0.00 35.84 3.85
581 587 6.267928 ACTGTTGTATGACTCTGTAAGGTCTT 59.732 38.462 0.00 0.00 35.84 3.01
582 588 6.455647 TGTTGTATGACTCTGTAAGGTCTTG 58.544 40.000 0.00 0.00 35.84 3.02
583 589 6.041637 TGTTGTATGACTCTGTAAGGTCTTGT 59.958 38.462 0.00 0.00 35.84 3.16
584 590 7.231925 TGTTGTATGACTCTGTAAGGTCTTGTA 59.768 37.037 0.00 0.00 35.84 2.41
585 591 7.770366 TGTATGACTCTGTAAGGTCTTGTAA 57.230 36.000 0.00 0.00 35.84 2.41
586 592 7.827701 TGTATGACTCTGTAAGGTCTTGTAAG 58.172 38.462 0.00 0.00 35.84 2.34
587 593 7.668469 TGTATGACTCTGTAAGGTCTTGTAAGA 59.332 37.037 0.00 0.00 35.84 2.10
588 594 6.971726 TGACTCTGTAAGGTCTTGTAAGAA 57.028 37.500 0.00 0.00 36.68 2.52
589 595 7.540474 TGACTCTGTAAGGTCTTGTAAGAAT 57.460 36.000 0.00 0.00 36.68 2.40
590 596 8.645814 TGACTCTGTAAGGTCTTGTAAGAATA 57.354 34.615 0.00 0.00 36.68 1.75
591 597 9.085645 TGACTCTGTAAGGTCTTGTAAGAATAA 57.914 33.333 0.00 0.00 36.68 1.40
607 613 9.398538 TGTAAGAATAATTAATAAAGTGGCCGT 57.601 29.630 0.00 0.00 0.00 5.68
611 617 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
612 618 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
613 619 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
614 620 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
615 621 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
616 622 0.392461 AAAGTGGCCGTATGCATCGT 60.392 50.000 0.19 0.00 43.89 3.73
617 623 0.810031 AAGTGGCCGTATGCATCGTC 60.810 55.000 0.19 0.00 43.89 4.20
618 624 2.108157 TGGCCGTATGCATCGTCC 59.892 61.111 0.19 7.07 43.89 4.79
619 625 2.108157 GGCCGTATGCATCGTCCA 59.892 61.111 0.19 0.00 43.89 4.02
620 626 1.956170 GGCCGTATGCATCGTCCAG 60.956 63.158 0.19 0.00 43.89 3.86
621 627 1.067416 GCCGTATGCATCGTCCAGA 59.933 57.895 0.19 0.00 40.77 3.86
622 628 0.319900 GCCGTATGCATCGTCCAGAT 60.320 55.000 0.19 0.00 41.01 2.90
630 636 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
631 637 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
632 638 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
633 639 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
634 640 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
635 641 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
637 643 4.554036 GATGCAGAGGCCGGGGTC 62.554 72.222 2.18 0.00 40.13 4.46
640 646 4.554036 GCAGAGGCCGGGGTCATC 62.554 72.222 2.18 0.00 0.00 2.92
641 647 3.866582 CAGAGGCCGGGGTCATCC 61.867 72.222 2.18 0.00 0.00 3.51
642 648 4.095400 AGAGGCCGGGGTCATCCT 62.095 66.667 2.18 0.00 35.33 3.24
643 649 3.551407 GAGGCCGGGGTCATCCTC 61.551 72.222 2.18 5.59 38.40 3.71
646 652 3.090532 GCCGGGGTCATCCTCCTT 61.091 66.667 2.18 0.00 35.33 3.36
647 653 2.680370 GCCGGGGTCATCCTCCTTT 61.680 63.158 2.18 0.00 35.33 3.11
648 654 1.999346 CCGGGGTCATCCTCCTTTT 59.001 57.895 0.00 0.00 35.33 2.27
649 655 0.107165 CCGGGGTCATCCTCCTTTTC 60.107 60.000 0.00 0.00 35.33 2.29
650 656 0.912486 CGGGGTCATCCTCCTTTTCT 59.088 55.000 0.00 0.00 35.33 2.52
651 657 2.116238 CGGGGTCATCCTCCTTTTCTA 58.884 52.381 0.00 0.00 35.33 2.10
652 658 2.504175 CGGGGTCATCCTCCTTTTCTAA 59.496 50.000 0.00 0.00 35.33 2.10
653 659 3.054655 CGGGGTCATCCTCCTTTTCTAAA 60.055 47.826 0.00 0.00 35.33 1.85
654 660 4.566907 CGGGGTCATCCTCCTTTTCTAAAA 60.567 45.833 0.00 0.00 35.33 1.52
655 661 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
693 699 5.675684 ATACCATTTTCACCCATTTGACC 57.324 39.130 0.00 0.00 0.00 4.02
694 700 3.312890 ACCATTTTCACCCATTTGACCA 58.687 40.909 0.00 0.00 0.00 4.02
695 701 3.713764 ACCATTTTCACCCATTTGACCAA 59.286 39.130 0.00 0.00 0.00 3.67
696 702 4.064388 CCATTTTCACCCATTTGACCAAC 58.936 43.478 0.00 0.00 0.00 3.77
697 703 4.202346 CCATTTTCACCCATTTGACCAACT 60.202 41.667 0.00 0.00 0.00 3.16
794 810 6.603997 ACTCTTCCATGTTCTACTACTACCAG 59.396 42.308 0.00 0.00 0.00 4.00
831 847 6.285990 AGCAATGGAATTAATCAATTCTGCC 58.714 36.000 9.36 0.00 46.26 4.85
864 910 3.872240 GCCAATCAACACCAACCTAGCTA 60.872 47.826 0.00 0.00 0.00 3.32
905 1033 3.623510 GCCTACATTTCTACTTGACCAGC 59.376 47.826 0.00 0.00 0.00 4.85
944 1075 3.465403 CCCTCAGCCTCGACCCAG 61.465 72.222 0.00 0.00 0.00 4.45
1090 1224 3.384816 TGCATCCGCATCTACAAGG 57.615 52.632 0.00 0.00 45.36 3.61
1415 1561 4.253257 CGCCTACGCCGACTCCTC 62.253 72.222 0.00 0.00 0.00 3.71
1665 1822 4.131088 GTGGCCTCCGACGACCTC 62.131 72.222 3.32 0.00 0.00 3.85
2111 2378 5.125100 TCAGAATTCAGATTTGTGTTGGC 57.875 39.130 8.44 0.00 0.00 4.52
2113 2380 2.352503 ATTCAGATTTGTGTTGGCGC 57.647 45.000 0.00 0.00 0.00 6.53
2119 2386 1.522258 GATTTGTGTTGGCGCTGTTTG 59.478 47.619 7.64 0.00 0.00 2.93
2133 2400 2.608752 GCTGTTTGCCCATTGTTCAGAG 60.609 50.000 0.00 0.00 35.15 3.35
2163 2430 0.106868 GGGTTTACGGATGGAAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
2164 2431 0.913924 GGTTTACGGATGGAAGGGGA 59.086 55.000 0.00 0.00 0.00 4.81
2221 2488 9.116080 TCAGAATTGTTGGAGGATATATGGTAT 57.884 33.333 0.00 0.00 0.00 2.73
2286 2554 3.360867 TGGTCTCAAGGTTTTCTTTGCA 58.639 40.909 0.00 0.00 36.92 4.08
2310 2578 6.417044 CAGTATACGTATTTCGGGAGTTCAAG 59.583 42.308 14.33 0.00 44.69 3.02
2311 2579 2.344025 ACGTATTTCGGGAGTTCAAGC 58.656 47.619 0.00 0.00 44.69 4.01
2314 2582 3.181520 CGTATTTCGGGAGTTCAAGCTTG 60.182 47.826 20.81 20.81 35.71 4.01
2438 2729 4.204978 GCAACGTTTCAAGTTCATTCTGTG 59.795 41.667 0.00 0.00 0.00 3.66
2473 2764 5.620738 TTCCTCTGCTTAGCATGTCTATT 57.379 39.130 7.58 0.00 38.13 1.73
2475 2766 4.406972 TCCTCTGCTTAGCATGTCTATTGT 59.593 41.667 7.58 0.00 38.13 2.71
2476 2767 5.598417 TCCTCTGCTTAGCATGTCTATTGTA 59.402 40.000 7.58 0.00 38.13 2.41
2478 2769 5.847304 TCTGCTTAGCATGTCTATTGTAGG 58.153 41.667 7.58 0.00 38.13 3.18
2479 2770 4.380531 TGCTTAGCATGTCTATTGTAGGC 58.619 43.478 1.39 0.00 31.71 3.93
2506 2821 5.817816 GGGTACTGTATCAGAATTGTTGGAG 59.182 44.000 0.00 0.00 35.18 3.86
2511 2826 7.861629 ACTGTATCAGAATTGTTGGAGGATAA 58.138 34.615 3.70 0.00 35.18 1.75
2521 2836 9.778741 GAATTGTTGGAGGATAATACTGTCATA 57.221 33.333 0.00 0.00 0.00 2.15
2525 2840 7.344612 TGTTGGAGGATAATACTGTCATAGTGT 59.655 37.037 0.00 0.00 40.65 3.55
2554 2869 6.427242 CCAGATCAGTCCAAATGATGATAGTG 59.573 42.308 0.00 0.00 37.52 2.74
2583 3027 7.601073 TGTTGTATTGATTGCTGAACTCTAG 57.399 36.000 0.00 0.00 0.00 2.43
2633 3077 5.009610 GGCAAGTTACATTTGGAAGAGAACA 59.990 40.000 0.00 0.00 0.00 3.18
2638 3082 8.463930 AGTTACATTTGGAAGAGAACATTTCA 57.536 30.769 0.00 0.00 0.00 2.69
2687 3144 5.105392 TGTCTCCTTGTTCTTGTTGCATTTT 60.105 36.000 0.00 0.00 0.00 1.82
2689 3146 5.126869 TCTCCTTGTTCTTGTTGCATTTTCA 59.873 36.000 0.00 0.00 0.00 2.69
2745 3203 6.816134 TTGCTTAGCTGTTGTCATTTGATA 57.184 33.333 5.60 0.00 0.00 2.15
2758 3216 6.484288 TGTCATTTGATAATCCCTGTTGTCT 58.516 36.000 0.00 0.00 0.00 3.41
2773 3231 3.880490 TGTTGTCTTCCATGTTGTACCAC 59.120 43.478 0.00 0.00 0.00 4.16
2860 3370 0.618458 TTCCTCTGGTGTGGGCATAC 59.382 55.000 0.00 0.00 0.00 2.39
2877 3387 5.767168 GGGCATACTTCAGATAGCTTCAAAT 59.233 40.000 0.00 0.00 0.00 2.32
2879 3389 6.709846 GGCATACTTCAGATAGCTTCAAATCT 59.290 38.462 0.00 0.00 32.63 2.40
2887 3397 6.069673 TCAGATAGCTTCAAATCTTTACCCCA 60.070 38.462 0.00 0.00 29.93 4.96
2893 3403 4.799564 TCAAATCTTTACCCCATTGTGC 57.200 40.909 0.00 0.00 0.00 4.57
2896 3406 1.136565 CTTTACCCCATTGTGCGCG 59.863 57.895 0.00 0.00 0.00 6.86
2906 3416 2.095213 CCATTGTGCGCGTAACTAACAT 59.905 45.455 8.43 0.00 0.00 2.71
2907 3417 2.865556 TTGTGCGCGTAACTAACATG 57.134 45.000 8.43 0.00 0.00 3.21
2908 3418 0.440758 TGTGCGCGTAACTAACATGC 59.559 50.000 8.43 0.00 0.00 4.06
2909 3419 0.440758 GTGCGCGTAACTAACATGCA 59.559 50.000 8.43 0.00 36.00 3.96
2931 3441 0.759959 TTCGGCAGTTGGGTTAGTGA 59.240 50.000 0.00 0.00 0.00 3.41
2941 3451 6.122277 CAGTTGGGTTAGTGATATTGACCAT 58.878 40.000 0.00 0.00 32.00 3.55
2958 3468 5.030147 TGACCATGTATACTTGGGAACTCT 58.970 41.667 30.84 15.94 43.28 3.24
2959 3469 5.104941 TGACCATGTATACTTGGGAACTCTG 60.105 44.000 30.84 12.05 43.28 3.35
2964 3474 5.801380 TGTATACTTGGGAACTCTGGAAAC 58.199 41.667 4.17 0.00 0.00 2.78
2988 3498 2.974165 CGCAGCTTCATTATTCCGTTC 58.026 47.619 0.00 0.00 0.00 3.95
2994 3504 3.242316 GCTTCATTATTCCGTTCGTGGAC 60.242 47.826 0.00 0.00 37.89 4.02
2995 3505 3.880047 TCATTATTCCGTTCGTGGACT 57.120 42.857 0.00 0.00 37.89 3.85
2996 3506 3.777478 TCATTATTCCGTTCGTGGACTC 58.223 45.455 0.00 0.00 37.89 3.36
2997 3507 3.446161 TCATTATTCCGTTCGTGGACTCT 59.554 43.478 0.00 0.00 37.89 3.24
2998 3508 2.933495 TATTCCGTTCGTGGACTCTG 57.067 50.000 0.00 0.00 37.89 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.338015 CCAGCGCTGCTCCACAAAT 61.338 57.895 31.96 0.00 36.40 2.32
106 107 2.110213 ACCGAAGCTCCGTGCAAA 59.890 55.556 0.00 0.00 45.94 3.68
117 118 1.293924 GCATGACATCTCCACCGAAG 58.706 55.000 0.00 0.00 0.00 3.79
192 198 3.586618 AGCTTGAAGTCCTTGGAAGATCT 59.413 43.478 0.00 0.00 0.00 2.75
268 274 2.598632 AAACAGCTGAGCACGTCGC 61.599 57.895 23.35 2.28 42.91 5.19
269 275 1.202568 CAAACAGCTGAGCACGTCG 59.797 57.895 23.35 0.00 0.00 5.12
270 276 1.082496 GCAAACAGCTGAGCACGTC 60.082 57.895 23.35 0.00 41.15 4.34
271 277 2.885676 CGCAAACAGCTGAGCACGT 61.886 57.895 23.35 0.00 42.61 4.49
272 278 2.127496 CGCAAACAGCTGAGCACG 60.127 61.111 23.35 14.62 42.61 5.34
273 279 2.428071 GCGCAAACAGCTGAGCAC 60.428 61.111 23.35 11.46 41.27 4.40
274 280 4.016629 CGCGCAAACAGCTGAGCA 62.017 61.111 23.35 0.00 41.65 4.26
276 282 3.923356 CTGCGCGCAAACAGCTGAG 62.923 63.158 35.50 16.11 42.61 3.35
277 283 4.016629 CTGCGCGCAAACAGCTGA 62.017 61.111 35.50 8.69 42.61 4.26
281 287 4.093952 CTCCCTGCGCGCAAACAG 62.094 66.667 35.50 24.39 0.00 3.16
291 297 2.988839 AATGGCACCTCCTCCCTGC 61.989 63.158 0.00 0.00 35.26 4.85
292 298 1.077212 CAATGGCACCTCCTCCCTG 60.077 63.158 0.00 0.00 35.26 4.45
293 299 2.311854 CCAATGGCACCTCCTCCCT 61.312 63.158 0.00 0.00 35.26 4.20
294 300 2.276740 CCAATGGCACCTCCTCCC 59.723 66.667 0.00 0.00 35.26 4.30
295 301 2.276740 CCCAATGGCACCTCCTCC 59.723 66.667 0.00 0.00 35.26 4.30
316 322 3.385440 TATCGTCGACGCCACCACG 62.385 63.158 32.19 7.94 39.60 4.94
317 323 1.585521 CTATCGTCGACGCCACCAC 60.586 63.158 32.19 0.00 39.60 4.16
318 324 2.795973 CTATCGTCGACGCCACCA 59.204 61.111 32.19 15.92 39.60 4.17
319 325 2.654404 GCTATCGTCGACGCCACC 60.654 66.667 32.19 16.46 39.60 4.61
320 326 1.939785 CTGCTATCGTCGACGCCAC 60.940 63.158 32.19 20.44 39.60 5.01
321 327 2.110352 TCTGCTATCGTCGACGCCA 61.110 57.895 32.19 22.35 39.60 5.69
322 328 1.654743 GTCTGCTATCGTCGACGCC 60.655 63.158 32.19 19.30 39.60 5.68
323 329 1.654743 GGTCTGCTATCGTCGACGC 60.655 63.158 32.19 18.78 39.60 5.19
324 330 1.367782 CGGTCTGCTATCGTCGACG 60.368 63.158 31.30 31.30 41.45 5.12
325 331 0.042013 CTCGGTCTGCTATCGTCGAC 60.042 60.000 5.18 5.18 0.00 4.20
326 332 1.773054 GCTCGGTCTGCTATCGTCGA 61.773 60.000 0.00 0.00 0.00 4.20
327 333 1.369448 GCTCGGTCTGCTATCGTCG 60.369 63.158 0.00 0.00 0.00 5.12
328 334 0.100682 TTGCTCGGTCTGCTATCGTC 59.899 55.000 0.00 0.00 0.00 4.20
329 335 0.101399 CTTGCTCGGTCTGCTATCGT 59.899 55.000 0.00 0.00 0.00 3.73
330 336 0.596083 CCTTGCTCGGTCTGCTATCG 60.596 60.000 0.00 0.00 0.00 2.92
331 337 0.461961 ACCTTGCTCGGTCTGCTATC 59.538 55.000 0.00 0.00 29.14 2.08
332 338 0.905357 AACCTTGCTCGGTCTGCTAT 59.095 50.000 0.00 0.00 35.89 2.97
333 339 0.037326 CAACCTTGCTCGGTCTGCTA 60.037 55.000 0.00 0.00 35.89 3.49
334 340 1.302033 CAACCTTGCTCGGTCTGCT 60.302 57.895 0.00 0.00 35.89 4.24
335 341 0.674895 ATCAACCTTGCTCGGTCTGC 60.675 55.000 0.00 0.00 35.89 4.26
336 342 1.081892 CATCAACCTTGCTCGGTCTG 58.918 55.000 0.00 1.00 35.89 3.51
337 343 0.674895 GCATCAACCTTGCTCGGTCT 60.675 55.000 0.00 0.00 35.89 3.85
338 344 0.955428 TGCATCAACCTTGCTCGGTC 60.955 55.000 0.00 0.00 40.77 4.79
339 345 0.322816 ATGCATCAACCTTGCTCGGT 60.323 50.000 0.00 0.00 40.77 4.69
340 346 0.379669 GATGCATCAACCTTGCTCGG 59.620 55.000 21.92 0.00 40.77 4.63
341 347 1.063616 CTGATGCATCAACCTTGCTCG 59.936 52.381 28.39 11.12 40.77 5.03
342 348 2.089980 ACTGATGCATCAACCTTGCTC 58.910 47.619 28.39 0.00 40.77 4.26
343 349 2.211250 ACTGATGCATCAACCTTGCT 57.789 45.000 28.39 6.52 40.77 3.91
344 350 2.749076 TGTACTGATGCATCAACCTTGC 59.251 45.455 28.39 16.65 40.55 4.01
345 351 4.005650 ACTGTACTGATGCATCAACCTTG 58.994 43.478 28.39 18.95 36.18 3.61
346 352 4.292186 ACTGTACTGATGCATCAACCTT 57.708 40.909 28.39 15.80 36.18 3.50
347 353 3.988976 ACTGTACTGATGCATCAACCT 57.011 42.857 28.39 16.49 36.18 3.50
348 354 4.093998 CAGAACTGTACTGATGCATCAACC 59.906 45.833 28.39 18.82 37.54 3.77
349 355 4.931601 TCAGAACTGTACTGATGCATCAAC 59.068 41.667 28.39 23.87 39.10 3.18
350 356 5.151297 TCAGAACTGTACTGATGCATCAA 57.849 39.130 28.39 13.65 39.10 2.57
351 357 4.806640 TCAGAACTGTACTGATGCATCA 57.193 40.909 27.10 27.10 39.10 3.07
352 358 5.414360 TCTTCAGAACTGTACTGATGCATC 58.586 41.667 20.14 20.14 42.68 3.91
353 359 5.411831 TCTTCAGAACTGTACTGATGCAT 57.588 39.130 0.00 0.00 42.68 3.96
354 360 4.871933 TCTTCAGAACTGTACTGATGCA 57.128 40.909 6.77 0.00 42.68 3.96
355 361 4.569966 CCATCTTCAGAACTGTACTGATGC 59.430 45.833 6.77 0.00 42.68 3.91
356 362 5.970592 TCCATCTTCAGAACTGTACTGATG 58.029 41.667 6.77 0.00 42.68 3.07
357 363 5.395103 GCTCCATCTTCAGAACTGTACTGAT 60.395 44.000 6.77 0.00 42.68 2.90
358 364 4.081972 GCTCCATCTTCAGAACTGTACTGA 60.082 45.833 6.77 0.00 41.70 3.41
359 365 4.180057 GCTCCATCTTCAGAACTGTACTG 58.820 47.826 0.00 0.00 36.80 2.74
360 366 3.119316 CGCTCCATCTTCAGAACTGTACT 60.119 47.826 1.73 0.00 0.00 2.73
361 367 3.182967 CGCTCCATCTTCAGAACTGTAC 58.817 50.000 1.73 0.00 0.00 2.90
362 368 2.166459 CCGCTCCATCTTCAGAACTGTA 59.834 50.000 1.73 0.00 0.00 2.74
363 369 1.066573 CCGCTCCATCTTCAGAACTGT 60.067 52.381 1.73 0.00 0.00 3.55
364 370 1.066573 ACCGCTCCATCTTCAGAACTG 60.067 52.381 0.00 0.00 0.00 3.16
365 371 1.066573 CACCGCTCCATCTTCAGAACT 60.067 52.381 0.00 0.00 0.00 3.01
366 372 1.363744 CACCGCTCCATCTTCAGAAC 58.636 55.000 0.00 0.00 0.00 3.01
367 373 0.250234 CCACCGCTCCATCTTCAGAA 59.750 55.000 0.00 0.00 0.00 3.02
368 374 1.900351 CCACCGCTCCATCTTCAGA 59.100 57.895 0.00 0.00 0.00 3.27
369 375 1.817099 GCCACCGCTCCATCTTCAG 60.817 63.158 0.00 0.00 0.00 3.02
370 376 2.268920 GCCACCGCTCCATCTTCA 59.731 61.111 0.00 0.00 0.00 3.02
371 377 1.817099 CTGCCACCGCTCCATCTTC 60.817 63.158 0.00 0.00 35.36 2.87
372 378 2.129555 AACTGCCACCGCTCCATCTT 62.130 55.000 0.00 0.00 35.36 2.40
373 379 2.596851 AACTGCCACCGCTCCATCT 61.597 57.895 0.00 0.00 35.36 2.90
374 380 2.045926 AACTGCCACCGCTCCATC 60.046 61.111 0.00 0.00 35.36 3.51
375 381 2.360350 CAACTGCCACCGCTCCAT 60.360 61.111 0.00 0.00 35.36 3.41
376 382 4.641645 CCAACTGCCACCGCTCCA 62.642 66.667 0.00 0.00 35.36 3.86
397 403 3.838271 TGCTCTTAGAGGCCGCCG 61.838 66.667 11.54 0.00 0.00 6.46
398 404 2.202946 GTGCTCTTAGAGGCCGCC 60.203 66.667 11.54 0.00 0.00 6.13
399 405 2.583593 CGTGCTCTTAGAGGCCGC 60.584 66.667 11.54 0.00 0.00 6.53
400 406 2.583593 GCGTGCTCTTAGAGGCCG 60.584 66.667 11.54 9.72 0.00 6.13
401 407 1.520342 CTGCGTGCTCTTAGAGGCC 60.520 63.158 11.54 0.00 0.00 5.19
402 408 1.520342 CCTGCGTGCTCTTAGAGGC 60.520 63.158 11.54 6.69 0.00 4.70
403 409 0.179124 GTCCTGCGTGCTCTTAGAGG 60.179 60.000 11.54 0.00 0.00 3.69
404 410 0.179124 GGTCCTGCGTGCTCTTAGAG 60.179 60.000 4.63 4.63 0.00 2.43
405 411 0.898326 TGGTCCTGCGTGCTCTTAGA 60.898 55.000 0.00 0.00 0.00 2.10
406 412 0.459237 CTGGTCCTGCGTGCTCTTAG 60.459 60.000 0.00 0.00 0.00 2.18
407 413 1.185618 ACTGGTCCTGCGTGCTCTTA 61.186 55.000 0.00 0.00 0.00 2.10
408 414 2.345244 CTGGTCCTGCGTGCTCTT 59.655 61.111 0.00 0.00 0.00 2.85
409 415 2.919856 ACTGGTCCTGCGTGCTCT 60.920 61.111 0.00 0.00 0.00 4.09
410 416 2.740055 CACTGGTCCTGCGTGCTC 60.740 66.667 0.00 0.00 0.00 4.26
411 417 3.550431 ACACTGGTCCTGCGTGCT 61.550 61.111 0.00 0.00 32.07 4.40
412 418 2.709125 TACACACTGGTCCTGCGTGC 62.709 60.000 14.82 0.00 32.07 5.34
413 419 0.944311 GTACACACTGGTCCTGCGTG 60.944 60.000 13.65 13.65 34.92 5.34
414 420 1.366366 GTACACACTGGTCCTGCGT 59.634 57.895 0.00 0.00 0.00 5.24
415 421 1.374252 GGTACACACTGGTCCTGCG 60.374 63.158 0.00 0.00 0.00 5.18
416 422 1.003718 GGGTACACACTGGTCCTGC 60.004 63.158 0.00 0.00 0.00 4.85
417 423 1.125093 TGGGGTACACACTGGTCCTG 61.125 60.000 0.00 0.00 0.00 3.86
418 424 0.836400 CTGGGGTACACACTGGTCCT 60.836 60.000 0.00 0.00 0.00 3.85
419 425 0.834687 TCTGGGGTACACACTGGTCC 60.835 60.000 0.00 0.00 0.00 4.46
420 426 0.320697 GTCTGGGGTACACACTGGTC 59.679 60.000 0.00 0.00 0.00 4.02
421 427 1.125711 GGTCTGGGGTACACACTGGT 61.126 60.000 0.00 0.00 0.00 4.00
422 428 1.677552 GGTCTGGGGTACACACTGG 59.322 63.158 0.00 0.00 0.00 4.00
423 429 1.677552 GGGTCTGGGGTACACACTG 59.322 63.158 0.00 0.00 0.00 3.66
424 430 1.911766 CGGGTCTGGGGTACACACT 60.912 63.158 0.00 0.00 0.00 3.55
425 431 2.660802 CGGGTCTGGGGTACACAC 59.339 66.667 0.00 0.00 0.00 3.82
426 432 2.605295 CCGGGTCTGGGGTACACA 60.605 66.667 0.00 0.00 0.00 3.72
427 433 4.091939 GCCGGGTCTGGGGTACAC 62.092 72.222 2.18 0.00 0.00 2.90
428 434 4.642488 TGCCGGGTCTGGGGTACA 62.642 66.667 2.18 0.00 0.00 2.90
429 435 3.324108 TTGCCGGGTCTGGGGTAC 61.324 66.667 2.18 0.00 0.00 3.34
430 436 3.006728 CTTGCCGGGTCTGGGGTA 61.007 66.667 2.18 0.00 0.00 3.69
432 438 4.722700 CACTTGCCGGGTCTGGGG 62.723 72.222 2.18 0.00 0.00 4.96
433 439 4.722700 CCACTTGCCGGGTCTGGG 62.723 72.222 2.18 0.00 0.00 4.45
435 441 2.859273 CTAGCCACTTGCCGGGTCTG 62.859 65.000 2.18 0.00 42.71 3.51
436 442 2.606519 TAGCCACTTGCCGGGTCT 60.607 61.111 2.18 0.00 42.71 3.85
437 443 2.125106 CTAGCCACTTGCCGGGTC 60.125 66.667 2.18 0.00 42.71 4.46
438 444 3.717294 CCTAGCCACTTGCCGGGT 61.717 66.667 2.18 0.00 42.71 5.28
439 445 3.268103 AACCTAGCCACTTGCCGGG 62.268 63.158 2.18 0.00 42.71 5.73
440 446 2.040544 CAACCTAGCCACTTGCCGG 61.041 63.158 0.00 0.00 42.71 6.13
441 447 2.690778 GCAACCTAGCCACTTGCCG 61.691 63.158 0.00 0.00 42.71 5.69
442 448 2.690778 CGCAACCTAGCCACTTGCC 61.691 63.158 0.00 0.00 42.71 4.52
443 449 1.026718 ATCGCAACCTAGCCACTTGC 61.027 55.000 0.00 0.00 37.52 4.01
444 450 0.729116 CATCGCAACCTAGCCACTTG 59.271 55.000 0.00 0.00 0.00 3.16
445 451 0.324943 ACATCGCAACCTAGCCACTT 59.675 50.000 0.00 0.00 0.00 3.16
446 452 0.108138 GACATCGCAACCTAGCCACT 60.108 55.000 0.00 0.00 0.00 4.00
447 453 0.108138 AGACATCGCAACCTAGCCAC 60.108 55.000 0.00 0.00 0.00 5.01
448 454 0.108186 CAGACATCGCAACCTAGCCA 60.108 55.000 0.00 0.00 0.00 4.75
449 455 0.108138 ACAGACATCGCAACCTAGCC 60.108 55.000 0.00 0.00 0.00 3.93
450 456 1.726853 AACAGACATCGCAACCTAGC 58.273 50.000 0.00 0.00 0.00 3.42
451 457 2.416547 CCAAACAGACATCGCAACCTAG 59.583 50.000 0.00 0.00 0.00 3.02
452 458 2.224426 ACCAAACAGACATCGCAACCTA 60.224 45.455 0.00 0.00 0.00 3.08
453 459 1.238439 CCAAACAGACATCGCAACCT 58.762 50.000 0.00 0.00 0.00 3.50
454 460 0.951558 ACCAAACAGACATCGCAACC 59.048 50.000 0.00 0.00 0.00 3.77
455 461 4.419522 AATACCAAACAGACATCGCAAC 57.580 40.909 0.00 0.00 0.00 4.17
456 462 4.634004 CCTAATACCAAACAGACATCGCAA 59.366 41.667 0.00 0.00 0.00 4.85
457 463 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
458 464 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
459 465 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
460 466 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
461 467 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
462 468 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
463 469 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
464 470 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
465 471 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
466 472 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
467 473 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
468 474 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
469 475 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
470 476 2.158004 AGATAGCCTGGGCCTAATACCA 60.158 50.000 4.53 0.00 43.17 3.25
471 477 2.237392 CAGATAGCCTGGGCCTAATACC 59.763 54.545 4.53 0.00 43.17 2.73
472 478 2.355209 GCAGATAGCCTGGGCCTAATAC 60.355 54.545 4.53 0.00 43.13 1.89
473 479 1.909302 GCAGATAGCCTGGGCCTAATA 59.091 52.381 4.53 0.00 43.13 0.98
474 480 0.695347 GCAGATAGCCTGGGCCTAAT 59.305 55.000 4.53 0.00 43.13 1.73
475 481 1.758440 CGCAGATAGCCTGGGCCTAA 61.758 60.000 4.53 0.00 46.58 2.69
476 482 2.210013 CGCAGATAGCCTGGGCCTA 61.210 63.158 4.53 0.00 46.58 3.93
477 483 3.554342 CGCAGATAGCCTGGGCCT 61.554 66.667 4.53 0.00 46.58 5.19
485 491 0.952984 GATGAAGGGGCGCAGATAGC 60.953 60.000 10.83 0.00 40.87 2.97
486 492 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
487 493 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
488 494 0.749454 GTTGATGAAGGGGCGCAGAT 60.749 55.000 10.83 0.00 0.00 2.90
489 495 1.377202 GTTGATGAAGGGGCGCAGA 60.377 57.895 10.83 0.00 0.00 4.26
490 496 1.377725 AGTTGATGAAGGGGCGCAG 60.378 57.895 10.83 0.00 0.00 5.18
491 497 1.675310 CAGTTGATGAAGGGGCGCA 60.675 57.895 10.83 0.00 0.00 6.09
492 498 2.409870 CCAGTTGATGAAGGGGCGC 61.410 63.158 0.00 0.00 0.00 6.53
493 499 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13
494 500 2.487986 CCTATCCAGTTGATGAAGGGGC 60.488 54.545 0.00 0.00 34.76 5.80
495 501 2.780010 ACCTATCCAGTTGATGAAGGGG 59.220 50.000 0.00 0.00 34.76 4.79
496 502 3.200825 ACACCTATCCAGTTGATGAAGGG 59.799 47.826 0.00 0.00 34.76 3.95
497 503 4.494091 ACACCTATCCAGTTGATGAAGG 57.506 45.455 0.00 0.00 34.76 3.46
498 504 5.053145 GCTACACCTATCCAGTTGATGAAG 58.947 45.833 0.00 0.00 34.76 3.02
499 505 4.441495 CGCTACACCTATCCAGTTGATGAA 60.441 45.833 0.00 0.00 34.76 2.57
500 506 3.068165 CGCTACACCTATCCAGTTGATGA 59.932 47.826 0.00 0.00 34.76 2.92
501 507 3.068165 TCGCTACACCTATCCAGTTGATG 59.932 47.826 0.00 0.00 34.76 3.07
502 508 3.296854 TCGCTACACCTATCCAGTTGAT 58.703 45.455 0.00 0.00 37.49 2.57
503 509 2.730382 TCGCTACACCTATCCAGTTGA 58.270 47.619 0.00 0.00 0.00 3.18
504 510 3.735237 ATCGCTACACCTATCCAGTTG 57.265 47.619 0.00 0.00 0.00 3.16
505 511 4.471548 ACTATCGCTACACCTATCCAGTT 58.528 43.478 0.00 0.00 0.00 3.16
506 512 4.101645 ACTATCGCTACACCTATCCAGT 57.898 45.455 0.00 0.00 0.00 4.00
507 513 5.221263 ACAAACTATCGCTACACCTATCCAG 60.221 44.000 0.00 0.00 0.00 3.86
508 514 4.647853 ACAAACTATCGCTACACCTATCCA 59.352 41.667 0.00 0.00 0.00 3.41
509 515 5.197682 ACAAACTATCGCTACACCTATCC 57.802 43.478 0.00 0.00 0.00 2.59
510 516 5.050972 GCAACAAACTATCGCTACACCTATC 60.051 44.000 0.00 0.00 0.00 2.08
511 517 4.809426 GCAACAAACTATCGCTACACCTAT 59.191 41.667 0.00 0.00 0.00 2.57
512 518 4.081862 AGCAACAAACTATCGCTACACCTA 60.082 41.667 0.00 0.00 0.00 3.08
513 519 3.000727 GCAACAAACTATCGCTACACCT 58.999 45.455 0.00 0.00 0.00 4.00
514 520 3.000727 AGCAACAAACTATCGCTACACC 58.999 45.455 0.00 0.00 0.00 4.16
515 521 4.663636 AAGCAACAAACTATCGCTACAC 57.336 40.909 0.00 0.00 31.36 2.90
516 522 5.575606 GTCTAAGCAACAAACTATCGCTACA 59.424 40.000 0.00 0.00 31.36 2.74
517 523 5.275788 CGTCTAAGCAACAAACTATCGCTAC 60.276 44.000 0.00 0.00 31.36 3.58
518 524 4.796830 CGTCTAAGCAACAAACTATCGCTA 59.203 41.667 0.00 0.00 31.36 4.26
519 525 3.612860 CGTCTAAGCAACAAACTATCGCT 59.387 43.478 0.00 0.00 33.45 4.93
520 526 3.367025 ACGTCTAAGCAACAAACTATCGC 59.633 43.478 0.00 0.00 0.00 4.58
521 527 4.258899 CGACGTCTAAGCAACAAACTATCG 60.259 45.833 14.70 0.00 0.00 2.92
522 528 4.031426 CCGACGTCTAAGCAACAAACTATC 59.969 45.833 14.70 0.00 0.00 2.08
523 529 3.924686 CCGACGTCTAAGCAACAAACTAT 59.075 43.478 14.70 0.00 0.00 2.12
524 530 3.311106 CCGACGTCTAAGCAACAAACTA 58.689 45.455 14.70 0.00 0.00 2.24
525 531 2.132762 CCGACGTCTAAGCAACAAACT 58.867 47.619 14.70 0.00 0.00 2.66
526 532 1.398071 GCCGACGTCTAAGCAACAAAC 60.398 52.381 14.70 0.00 0.00 2.93
527 533 0.863144 GCCGACGTCTAAGCAACAAA 59.137 50.000 14.70 0.00 0.00 2.83
528 534 0.032952 AGCCGACGTCTAAGCAACAA 59.967 50.000 19.81 0.00 0.00 2.83
529 535 0.032952 AAGCCGACGTCTAAGCAACA 59.967 50.000 19.81 0.00 0.00 3.33
530 536 1.145803 AAAGCCGACGTCTAAGCAAC 58.854 50.000 19.81 1.30 0.00 4.17
531 537 2.029649 ACTAAAGCCGACGTCTAAGCAA 60.030 45.455 19.81 7.76 0.00 3.91
532 538 1.542915 ACTAAAGCCGACGTCTAAGCA 59.457 47.619 19.81 3.59 0.00 3.91
533 539 2.159407 AGACTAAAGCCGACGTCTAAGC 60.159 50.000 14.70 13.46 35.15 3.09
534 540 3.761311 AGACTAAAGCCGACGTCTAAG 57.239 47.619 14.70 3.33 35.15 2.18
535 541 4.697352 AGTAAGACTAAAGCCGACGTCTAA 59.303 41.667 14.70 0.00 35.82 2.10
536 542 4.093998 CAGTAAGACTAAAGCCGACGTCTA 59.906 45.833 14.70 0.00 35.82 2.59
537 543 3.080319 AGTAAGACTAAAGCCGACGTCT 58.920 45.455 14.70 0.00 38.29 4.18
538 544 3.169733 CAGTAAGACTAAAGCCGACGTC 58.830 50.000 5.18 5.18 0.00 4.34
539 545 2.555757 ACAGTAAGACTAAAGCCGACGT 59.444 45.455 0.00 0.00 0.00 4.34
540 546 3.213249 ACAGTAAGACTAAAGCCGACG 57.787 47.619 0.00 0.00 0.00 5.12
541 547 4.304939 ACAACAGTAAGACTAAAGCCGAC 58.695 43.478 0.00 0.00 0.00 4.79
542 548 4.595762 ACAACAGTAAGACTAAAGCCGA 57.404 40.909 0.00 0.00 0.00 5.54
543 549 6.034683 GTCATACAACAGTAAGACTAAAGCCG 59.965 42.308 4.35 0.00 34.99 5.52
544 550 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
545 551 8.030106 AGAGTCATACAACAGTAAGACTAAAGC 58.970 37.037 11.93 2.82 43.14 3.51
546 552 9.347934 CAGAGTCATACAACAGTAAGACTAAAG 57.652 37.037 11.93 4.08 43.14 1.85
547 553 8.857098 ACAGAGTCATACAACAGTAAGACTAAA 58.143 33.333 11.93 0.00 43.14 1.85
548 554 8.405418 ACAGAGTCATACAACAGTAAGACTAA 57.595 34.615 11.93 0.00 43.14 2.24
549 555 7.997773 ACAGAGTCATACAACAGTAAGACTA 57.002 36.000 11.93 0.00 43.14 2.59
550 556 6.902771 ACAGAGTCATACAACAGTAAGACT 57.097 37.500 11.82 11.82 44.74 3.24
551 557 7.755822 CCTTACAGAGTCATACAACAGTAAGAC 59.244 40.741 0.00 3.57 39.45 3.01
552 558 7.450634 ACCTTACAGAGTCATACAACAGTAAGA 59.549 37.037 0.00 0.00 39.45 2.10
553 559 7.603651 ACCTTACAGAGTCATACAACAGTAAG 58.396 38.462 0.00 0.00 37.80 2.34
554 560 7.450634 AGACCTTACAGAGTCATACAACAGTAA 59.549 37.037 0.00 0.00 35.38 2.24
555 561 6.946583 AGACCTTACAGAGTCATACAACAGTA 59.053 38.462 0.00 0.00 35.38 2.74
556 562 5.775701 AGACCTTACAGAGTCATACAACAGT 59.224 40.000 0.00 0.00 35.38 3.55
557 563 6.274157 AGACCTTACAGAGTCATACAACAG 57.726 41.667 0.00 0.00 35.38 3.16
558 564 6.041637 ACAAGACCTTACAGAGTCATACAACA 59.958 38.462 0.00 0.00 35.38 3.33
559 565 6.456501 ACAAGACCTTACAGAGTCATACAAC 58.543 40.000 0.00 0.00 35.38 3.32
560 566 6.665992 ACAAGACCTTACAGAGTCATACAA 57.334 37.500 0.00 0.00 35.38 2.41
561 567 7.668469 TCTTACAAGACCTTACAGAGTCATACA 59.332 37.037 0.00 0.00 35.38 2.29
562 568 8.053026 TCTTACAAGACCTTACAGAGTCATAC 57.947 38.462 0.00 0.00 35.38 2.39
563 569 8.645814 TTCTTACAAGACCTTACAGAGTCATA 57.354 34.615 0.00 0.00 35.38 2.15
564 570 7.540474 TTCTTACAAGACCTTACAGAGTCAT 57.460 36.000 0.00 0.00 35.38 3.06
565 571 6.971726 TTCTTACAAGACCTTACAGAGTCA 57.028 37.500 0.00 0.00 35.38 3.41
581 587 9.398538 ACGGCCACTTTATTAATTATTCTTACA 57.601 29.630 2.24 0.00 0.00 2.41
585 591 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
586 592 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
587 593 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
588 594 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
589 595 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
590 596 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
591 597 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
592 598 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
593 599 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
594 600 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
595 601 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
596 602 1.134640 ACGATGCATACGGCCACTTTA 60.135 47.619 18.34 0.00 43.89 1.85
597 603 0.392461 ACGATGCATACGGCCACTTT 60.392 50.000 18.34 0.00 43.89 2.66
598 604 0.810031 GACGATGCATACGGCCACTT 60.810 55.000 18.34 0.00 43.89 3.16
599 605 1.227263 GACGATGCATACGGCCACT 60.227 57.895 18.34 0.00 43.89 4.00
600 606 3.319904 GACGATGCATACGGCCAC 58.680 61.111 18.34 7.20 43.89 5.01
603 609 0.319900 ATCTGGACGATGCATACGGC 60.320 55.000 18.34 16.22 45.13 5.68
604 610 1.422388 CATCTGGACGATGCATACGG 58.578 55.000 18.34 6.85 42.75 4.02
612 618 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
613 619 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
614 620 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
615 621 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
616 622 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
617 623 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
618 624 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
620 626 4.554036 GACCCCGGCCTCTGCATC 62.554 72.222 0.00 0.00 40.13 3.91
623 629 4.554036 GATGACCCCGGCCTCTGC 62.554 72.222 0.00 0.00 0.00 4.26
624 630 3.866582 GGATGACCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
625 631 4.095400 AGGATGACCCCGGCCTCT 62.095 66.667 0.00 0.00 36.73 3.69
626 632 3.551407 GAGGATGACCCCGGCCTC 61.551 72.222 7.66 7.66 40.04 4.70
629 635 2.211468 AAAAGGAGGATGACCCCGGC 62.211 60.000 0.00 0.00 36.73 6.13
630 636 0.107165 GAAAAGGAGGATGACCCCGG 60.107 60.000 0.00 0.00 36.73 5.73
631 637 0.912486 AGAAAAGGAGGATGACCCCG 59.088 55.000 0.00 0.00 36.73 5.73
632 638 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
667 673 8.264347 GGTCAAATGGGTGAAAATGGTATTTAT 58.736 33.333 0.00 0.00 0.00 1.40
668 674 7.235606 TGGTCAAATGGGTGAAAATGGTATTTA 59.764 33.333 0.00 0.00 0.00 1.40
669 675 6.043706 TGGTCAAATGGGTGAAAATGGTATTT 59.956 34.615 0.00 0.00 0.00 1.40
670 676 5.545723 TGGTCAAATGGGTGAAAATGGTATT 59.454 36.000 0.00 0.00 0.00 1.89
671 677 5.090139 TGGTCAAATGGGTGAAAATGGTAT 58.910 37.500 0.00 0.00 0.00 2.73
672 678 4.483950 TGGTCAAATGGGTGAAAATGGTA 58.516 39.130 0.00 0.00 0.00 3.25
673 679 3.312890 TGGTCAAATGGGTGAAAATGGT 58.687 40.909 0.00 0.00 0.00 3.55
674 680 4.064388 GTTGGTCAAATGGGTGAAAATGG 58.936 43.478 0.00 0.00 0.00 3.16
675 681 4.959723 AGTTGGTCAAATGGGTGAAAATG 58.040 39.130 0.00 0.00 0.00 2.32
676 682 5.628797 AAGTTGGTCAAATGGGTGAAAAT 57.371 34.783 0.00 0.00 0.00 1.82
677 683 6.325028 TCATAAGTTGGTCAAATGGGTGAAAA 59.675 34.615 0.00 0.00 0.00 2.29
678 684 5.835819 TCATAAGTTGGTCAAATGGGTGAAA 59.164 36.000 0.00 0.00 0.00 2.69
679 685 5.389520 TCATAAGTTGGTCAAATGGGTGAA 58.610 37.500 0.00 0.00 0.00 3.18
680 686 4.991776 TCATAAGTTGGTCAAATGGGTGA 58.008 39.130 0.00 0.00 0.00 4.02
681 687 5.720371 TTCATAAGTTGGTCAAATGGGTG 57.280 39.130 0.00 0.00 0.00 4.61
682 688 6.933514 AATTCATAAGTTGGTCAAATGGGT 57.066 33.333 0.00 0.00 0.00 4.51
683 689 7.119553 CCAAAATTCATAAGTTGGTCAAATGGG 59.880 37.037 0.00 0.00 36.55 4.00
684 690 7.119553 CCCAAAATTCATAAGTTGGTCAAATGG 59.880 37.037 4.14 0.00 39.13 3.16
685 691 7.361116 GCCCAAAATTCATAAGTTGGTCAAATG 60.361 37.037 4.14 0.00 39.13 2.32
686 692 6.654582 GCCCAAAATTCATAAGTTGGTCAAAT 59.345 34.615 4.14 0.00 39.13 2.32
687 693 5.994668 GCCCAAAATTCATAAGTTGGTCAAA 59.005 36.000 4.14 0.00 39.13 2.69
688 694 5.070981 TGCCCAAAATTCATAAGTTGGTCAA 59.929 36.000 4.14 0.00 39.13 3.18
689 695 4.590647 TGCCCAAAATTCATAAGTTGGTCA 59.409 37.500 4.14 0.00 39.13 4.02
690 696 5.146010 TGCCCAAAATTCATAAGTTGGTC 57.854 39.130 4.14 0.00 39.13 4.02
691 697 5.550290 CTTGCCCAAAATTCATAAGTTGGT 58.450 37.500 4.14 0.00 39.13 3.67
692 698 4.392754 GCTTGCCCAAAATTCATAAGTTGG 59.607 41.667 0.00 0.00 40.24 3.77
693 699 4.996122 TGCTTGCCCAAAATTCATAAGTTG 59.004 37.500 0.00 0.00 0.00 3.16
694 700 5.011943 TCTGCTTGCCCAAAATTCATAAGTT 59.988 36.000 0.00 0.00 0.00 2.66
695 701 4.527816 TCTGCTTGCCCAAAATTCATAAGT 59.472 37.500 0.00 0.00 0.00 2.24
696 702 5.075858 TCTGCTTGCCCAAAATTCATAAG 57.924 39.130 0.00 0.00 0.00 1.73
697 703 5.187381 TGATCTGCTTGCCCAAAATTCATAA 59.813 36.000 0.00 0.00 0.00 1.90
786 797 7.907841 TGCTTAATCCTGATTACTGGTAGTA 57.092 36.000 0.00 0.00 36.65 1.82
829 845 0.455005 GATTGGCTTCTTGCTGAGGC 59.545 55.000 5.99 5.99 45.66 4.70
831 847 2.555325 TGTTGATTGGCTTCTTGCTGAG 59.445 45.455 0.00 0.00 42.39 3.35
905 1033 0.710567 CGTGTAGACTTTGCTCTGCG 59.289 55.000 0.00 0.00 0.00 5.18
944 1075 2.518709 TACGGTGGTGGTTGGGACC 61.519 63.158 0.00 0.00 46.71 4.46
1237 1383 2.683933 GAGGACGGGGAGCTTGGA 60.684 66.667 0.00 0.00 0.00 3.53
1917 2127 1.679898 GAGGAGGTGGAAGGTGTGG 59.320 63.158 0.00 0.00 0.00 4.17
2113 2380 2.624838 ACTCTGAACAATGGGCAAACAG 59.375 45.455 0.00 0.00 0.00 3.16
2119 2386 1.815003 CCTGAACTCTGAACAATGGGC 59.185 52.381 0.00 0.00 0.00 5.36
2133 2400 3.941573 TCCGTAAACCCAATACCTGAAC 58.058 45.455 0.00 0.00 0.00 3.18
2286 2554 6.455360 TTGAACTCCCGAAATACGTATACT 57.545 37.500 8.83 0.00 40.78 2.12
2310 2578 5.240403 AGTGAACAGAAAGAATTCCTCAAGC 59.760 40.000 0.65 0.00 36.12 4.01
2311 2579 6.874288 AGTGAACAGAAAGAATTCCTCAAG 57.126 37.500 0.65 0.00 36.12 3.02
2364 2636 0.524862 AAGCAAGCGCAGATTTCAGG 59.475 50.000 11.47 0.00 42.27 3.86
2438 2729 1.067354 CAGAGGAAATGCAACAAGGCC 60.067 52.381 0.00 0.00 0.00 5.19
2473 2764 3.641436 CTGATACAGTACCCATGCCTACA 59.359 47.826 0.00 0.00 0.00 2.74
2475 2766 4.193240 TCTGATACAGTACCCATGCCTA 57.807 45.455 0.00 0.00 32.61 3.93
2476 2767 3.046283 TCTGATACAGTACCCATGCCT 57.954 47.619 0.00 0.00 32.61 4.75
2478 2769 5.126067 ACAATTCTGATACAGTACCCATGC 58.874 41.667 0.00 0.00 32.61 4.06
2479 2770 6.038603 CCAACAATTCTGATACAGTACCCATG 59.961 42.308 0.00 0.00 32.61 3.66
2506 2821 7.896811 TGGATGACACTATGACAGTATTATCC 58.103 38.462 0.81 0.81 38.34 2.59
2511 2826 6.779539 TGATCTGGATGACACTATGACAGTAT 59.220 38.462 0.00 0.00 34.98 2.12
2521 2836 2.825223 TGGACTGATCTGGATGACACT 58.175 47.619 4.49 0.00 0.00 3.55
2525 2840 5.131475 TCATCATTTGGACTGATCTGGATGA 59.869 40.000 4.49 7.67 37.04 2.92
2554 2869 7.584987 AGTTCAGCAATCAATACAACAAGTAC 58.415 34.615 0.00 0.00 35.05 2.73
2569 2884 3.341823 CAAGGCACTAGAGTTCAGCAAT 58.658 45.455 0.00 0.00 38.49 3.56
2570 2885 2.550855 CCAAGGCACTAGAGTTCAGCAA 60.551 50.000 0.00 0.00 38.49 3.91
2583 3027 1.300388 CAGCAAAGCACCAAGGCAC 60.300 57.895 0.00 0.00 35.83 5.01
2638 3082 5.859205 ACTTTCCTCAAGCAAATGAACTT 57.141 34.783 0.00 0.00 35.65 2.66
2745 3203 3.814504 ACATGGAAGACAACAGGGATT 57.185 42.857 0.00 0.00 0.00 3.01
2758 3216 2.289195 GGACTCGTGGTACAACATGGAA 60.289 50.000 0.35 0.00 44.16 3.53
2773 3231 2.002586 GACAACATGGTCATGGACTCG 58.997 52.381 14.49 2.11 42.91 4.18
2860 3370 7.012799 GGGGTAAAGATTTGAAGCTATCTGAAG 59.987 40.741 0.00 0.00 31.70 3.02
2877 3387 1.302383 CGCGCACAATGGGGTAAAGA 61.302 55.000 8.75 0.00 0.00 2.52
2879 3389 0.321387 TACGCGCACAATGGGGTAAA 60.321 50.000 5.73 0.00 0.00 2.01
2887 3397 2.475519 GCATGTTAGTTACGCGCACAAT 60.476 45.455 5.73 0.00 0.00 2.71
2906 3416 2.267351 CCCAACTGCCGAACATGCA 61.267 57.895 0.00 0.00 37.17 3.96
2907 3417 1.805428 AACCCAACTGCCGAACATGC 61.805 55.000 0.00 0.00 0.00 4.06
2908 3418 1.468520 CTAACCCAACTGCCGAACATG 59.531 52.381 0.00 0.00 0.00 3.21
2909 3419 1.073284 ACTAACCCAACTGCCGAACAT 59.927 47.619 0.00 0.00 0.00 2.71
2931 3441 8.045720 AGTTCCCAAGTATACATGGTCAATAT 57.954 34.615 22.24 8.04 33.13 1.28
2941 3451 5.308497 TGTTTCCAGAGTTCCCAAGTATACA 59.692 40.000 5.50 0.00 0.00 2.29
2950 3460 0.955919 CGCCTGTTTCCAGAGTTCCC 60.956 60.000 0.00 0.00 41.50 3.97
2958 3468 2.203337 AAGCTGCGCCTGTTTCCA 60.203 55.556 4.18 0.00 0.00 3.53
2959 3469 1.589716 ATGAAGCTGCGCCTGTTTCC 61.590 55.000 18.71 6.94 0.00 3.13
2964 3474 1.002033 GGAATAATGAAGCTGCGCCTG 60.002 52.381 4.18 0.00 0.00 4.85
2980 3490 3.814577 CAGAGTCCACGAACGGAAT 57.185 52.632 0.00 0.00 36.62 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.