Multiple sequence alignment - TraesCS5D01G444000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G444000 chr5D 100.000 2462 0 0 1 2462 495198981 495201442 0.000000e+00 4547.0
1 TraesCS5D01G444000 chr5D 92.839 1592 59 18 8 1593 495141598 495143140 0.000000e+00 2257.0
2 TraesCS5D01G444000 chr5D 91.253 846 58 10 803 1644 517213269 517214102 0.000000e+00 1138.0
3 TraesCS5D01G444000 chr5D 87.097 403 35 11 2039 2440 495143448 495143834 8.080000e-120 440.0
4 TraesCS5D01G444000 chr5D 94.702 151 5 2 1852 1999 495143293 495143443 5.290000e-57 231.0
5 TraesCS5D01G444000 chr5D 91.558 154 12 1 719 872 495138827 495138979 6.900000e-51 211.0
6 TraesCS5D01G444000 chr5A 94.087 1353 58 13 757 2096 619344021 619345364 0.000000e+00 2036.0
7 TraesCS5D01G444000 chr5A 88.341 1055 89 21 803 1836 644310267 644311308 0.000000e+00 1236.0
8 TraesCS5D01G444000 chr5A 92.689 766 37 14 1710 2462 619345237 619345996 0.000000e+00 1086.0
9 TraesCS5D01G444000 chr5B 90.509 1296 79 17 709 1996 611677482 611678741 0.000000e+00 1672.0
10 TraesCS5D01G444000 chr5B 88.783 1052 83 20 803 1835 649498370 649499405 0.000000e+00 1256.0
11 TraesCS5D01G444000 chr5B 88.211 967 78 18 803 1763 629926477 629925541 0.000000e+00 1122.0
12 TraesCS5D01G444000 chr5B 86.473 998 80 32 803 1761 633171224 633172205 0.000000e+00 1044.0
13 TraesCS5D01G444000 chr5B 88.066 905 69 21 810 1703 628724530 628723654 0.000000e+00 1037.0
14 TraesCS5D01G444000 chr5B 90.236 635 27 14 803 1435 649694252 649694853 0.000000e+00 797.0
15 TraesCS5D01G444000 chr5B 89.885 435 28 2 2042 2462 611678749 611679181 1.660000e-151 545.0
16 TraesCS5D01G444000 chr1D 86.182 702 67 14 1 698 58617256 58616581 0.000000e+00 732.0
17 TraesCS5D01G444000 chr4B 85.455 715 78 21 9 707 499058564 499059268 0.000000e+00 721.0
18 TraesCS5D01G444000 chr2A 84.129 712 75 23 1 700 686639837 686639152 0.000000e+00 654.0
19 TraesCS5D01G444000 chr2A 83.194 720 82 28 1 703 696848197 696847500 7.480000e-175 623.0
20 TraesCS5D01G444000 chr2A 90.184 326 24 4 2140 2462 60618844 60618524 3.790000e-113 418.0
21 TraesCS5D01G444000 chr2A 100.000 40 0 0 1993 2032 60618908 60618869 9.440000e-10 75.0
22 TraesCS5D01G444000 chr2B 83.844 718 79 26 1 706 734222477 734221785 0.000000e+00 649.0
23 TraesCS5D01G444000 chr2B 84.718 602 65 22 113 703 50710800 50710215 5.900000e-161 577.0
24 TraesCS5D01G444000 chr2B 87.532 393 45 4 318 707 584468935 584468544 3.730000e-123 451.0
25 TraesCS5D01G444000 chr4D 88.525 549 40 13 1 538 69219891 69219355 0.000000e+00 643.0
26 TraesCS5D01G444000 chr4A 84.237 590 73 16 119 700 660440362 660440939 7.690000e-155 556.0
27 TraesCS5D01G444000 chr7D 82.241 580 80 16 129 693 86891455 86892026 1.710000e-131 479.0
28 TraesCS5D01G444000 chr3D 88.491 391 38 5 312 700 182343475 182343860 1.330000e-127 466.0
29 TraesCS5D01G444000 chr1A 89.877 326 25 4 2140 2462 558712381 558712701 1.760000e-111 412.0
30 TraesCS5D01G444000 chr6A 90.093 323 20 7 2145 2462 26213172 26213487 2.280000e-110 409.0
31 TraesCS5D01G444000 chr6B 88.957 326 28 4 2140 2462 667435715 667436035 1.770000e-106 396.0
32 TraesCS5D01G444000 chr6B 91.000 100 6 2 1995 2094 667435619 667435715 5.520000e-27 132.0
33 TraesCS5D01G444000 chrUn 88.685 327 28 5 2140 2462 330079190 330078869 8.250000e-105 390.0
34 TraesCS5D01G444000 chrUn 88.685 327 28 5 2140 2462 340823487 340823808 8.250000e-105 390.0
35 TraesCS5D01G444000 chrUn 89.000 100 8 2 1995 2094 330079286 330079190 1.200000e-23 121.0
36 TraesCS5D01G444000 chrUn 89.000 100 8 2 1995 2094 340823391 340823487 1.200000e-23 121.0
37 TraesCS5D01G444000 chr6D 91.358 162 14 0 1067 1228 24001596 24001757 3.190000e-54 222.0
38 TraesCS5D01G444000 chr6D 90.741 162 15 0 1067 1228 16502931 16503092 1.480000e-52 217.0
39 TraesCS5D01G444000 chr6D 90.741 162 15 0 1067 1228 29089724 29089885 1.480000e-52 217.0
40 TraesCS5D01G444000 chr7A 89.000 100 8 2 1995 2094 2148833 2148737 1.200000e-23 121.0
41 TraesCS5D01G444000 chr7A 89.000 100 8 2 1995 2094 2168759 2168663 1.200000e-23 121.0
42 TraesCS5D01G444000 chr3A 97.500 40 1 0 1993 2032 717438448 717438487 4.390000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G444000 chr5D 495198981 495201442 2461 False 4547.00 4547 100.000 1 2462 1 chr5D.!!$F1 2461
1 TraesCS5D01G444000 chr5D 517213269 517214102 833 False 1138.00 1138 91.253 803 1644 1 chr5D.!!$F2 841
2 TraesCS5D01G444000 chr5D 495138827 495143834 5007 False 784.75 2257 91.549 8 2440 4 chr5D.!!$F3 2432
3 TraesCS5D01G444000 chr5A 619344021 619345996 1975 False 1561.00 2036 93.388 757 2462 2 chr5A.!!$F2 1705
4 TraesCS5D01G444000 chr5A 644310267 644311308 1041 False 1236.00 1236 88.341 803 1836 1 chr5A.!!$F1 1033
5 TraesCS5D01G444000 chr5B 649498370 649499405 1035 False 1256.00 1256 88.783 803 1835 1 chr5B.!!$F2 1032
6 TraesCS5D01G444000 chr5B 629925541 629926477 936 True 1122.00 1122 88.211 803 1763 1 chr5B.!!$R2 960
7 TraesCS5D01G444000 chr5B 611677482 611679181 1699 False 1108.50 1672 90.197 709 2462 2 chr5B.!!$F4 1753
8 TraesCS5D01G444000 chr5B 633171224 633172205 981 False 1044.00 1044 86.473 803 1761 1 chr5B.!!$F1 958
9 TraesCS5D01G444000 chr5B 628723654 628724530 876 True 1037.00 1037 88.066 810 1703 1 chr5B.!!$R1 893
10 TraesCS5D01G444000 chr5B 649694252 649694853 601 False 797.00 797 90.236 803 1435 1 chr5B.!!$F3 632
11 TraesCS5D01G444000 chr1D 58616581 58617256 675 True 732.00 732 86.182 1 698 1 chr1D.!!$R1 697
12 TraesCS5D01G444000 chr4B 499058564 499059268 704 False 721.00 721 85.455 9 707 1 chr4B.!!$F1 698
13 TraesCS5D01G444000 chr2A 686639152 686639837 685 True 654.00 654 84.129 1 700 1 chr2A.!!$R1 699
14 TraesCS5D01G444000 chr2A 696847500 696848197 697 True 623.00 623 83.194 1 703 1 chr2A.!!$R2 702
15 TraesCS5D01G444000 chr2B 734221785 734222477 692 True 649.00 649 83.844 1 706 1 chr2B.!!$R3 705
16 TraesCS5D01G444000 chr2B 50710215 50710800 585 True 577.00 577 84.718 113 703 1 chr2B.!!$R1 590
17 TraesCS5D01G444000 chr4D 69219355 69219891 536 True 643.00 643 88.525 1 538 1 chr4D.!!$R1 537
18 TraesCS5D01G444000 chr4A 660440362 660440939 577 False 556.00 556 84.237 119 700 1 chr4A.!!$F1 581
19 TraesCS5D01G444000 chr7D 86891455 86892026 571 False 479.00 479 82.241 129 693 1 chr7D.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 600 0.109689 CGCGGGCGGACAAATAAAAA 60.110 50.0 4.92 0.0 35.56 1.94 F
680 692 0.385974 CGTTGCGAGGCTTCCAAAAG 60.386 55.0 2.89 0.0 35.47 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 5020 1.536662 ACTTGGGCTCCTTCTCCGT 60.537 57.895 0.0 0.00 0.0 4.69 R
2393 6464 2.745821 ACAACAGCAGTGCATCATACAG 59.254 45.455 19.2 1.08 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.534203 GTTTCCAAGGAGGCACGACA 60.534 55.000 0.00 0.00 37.29 4.35
234 239 1.226547 CGCAAAAGCACAACCGTGT 60.227 52.632 0.00 0.00 45.50 4.49
265 270 1.495584 GCAAAACCGTGACTCTCGCA 61.496 55.000 0.00 0.00 0.00 5.10
405 417 3.916439 CGAAAGCAAAACCGTGCC 58.084 55.556 0.00 0.00 46.14 5.01
406 418 1.358759 CGAAAGCAAAACCGTGCCT 59.641 52.632 0.00 0.00 46.14 4.75
407 419 0.660300 CGAAAGCAAAACCGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
408 420 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
409 421 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
410 422 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
411 423 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
417 429 4.421479 CGTGCCTCTCGCGGAAGT 62.421 66.667 6.13 0.00 44.36 3.01
418 430 2.882876 GTGCCTCTCGCGGAAGTA 59.117 61.111 6.13 0.00 42.08 2.24
419 431 1.214589 GTGCCTCTCGCGGAAGTAA 59.785 57.895 6.13 0.00 42.08 2.24
420 432 0.389426 GTGCCTCTCGCGGAAGTAAA 60.389 55.000 6.13 0.00 42.08 2.01
421 433 0.319083 TGCCTCTCGCGGAAGTAAAA 59.681 50.000 6.13 0.00 42.08 1.52
422 434 0.720027 GCCTCTCGCGGAAGTAAAAC 59.280 55.000 6.13 0.00 0.00 2.43
423 435 1.356938 CCTCTCGCGGAAGTAAAACC 58.643 55.000 6.13 0.00 0.00 3.27
431 443 3.022607 CGGAAGTAAAACCGTGACTCT 57.977 47.619 0.00 0.00 43.53 3.24
432 444 2.985139 CGGAAGTAAAACCGTGACTCTC 59.015 50.000 0.00 0.00 43.53 3.20
433 445 2.985139 GGAAGTAAAACCGTGACTCTCG 59.015 50.000 0.00 0.00 0.00 4.04
434 446 2.061740 AGTAAAACCGTGACTCTCGC 57.938 50.000 0.00 0.00 0.00 5.03
442 454 3.491581 GTGACTCTCGCGAAAGGAA 57.508 52.632 14.96 0.00 0.00 3.36
443 455 1.779569 GTGACTCTCGCGAAAGGAAA 58.220 50.000 14.96 0.00 0.00 3.13
444 456 2.132762 GTGACTCTCGCGAAAGGAAAA 58.867 47.619 14.96 0.00 0.00 2.29
445 457 2.542595 GTGACTCTCGCGAAAGGAAAAA 59.457 45.455 14.96 0.00 0.00 1.94
512 524 6.737254 TTATCAAAAAGCTAGGAAAGACCG 57.263 37.500 0.00 0.00 44.74 4.79
513 525 3.408634 TCAAAAAGCTAGGAAAGACCGG 58.591 45.455 0.00 0.00 44.74 5.28
514 526 3.146847 CAAAAAGCTAGGAAAGACCGGT 58.853 45.455 6.92 6.92 44.74 5.28
515 527 2.474410 AAAGCTAGGAAAGACCGGTG 57.526 50.000 14.63 0.00 44.74 4.94
516 528 0.613777 AAGCTAGGAAAGACCGGTGG 59.386 55.000 14.63 0.00 44.74 4.61
517 529 0.252103 AGCTAGGAAAGACCGGTGGA 60.252 55.000 14.63 0.00 44.74 4.02
518 530 0.611714 GCTAGGAAAGACCGGTGGAA 59.388 55.000 14.63 0.00 44.74 3.53
519 531 1.002773 GCTAGGAAAGACCGGTGGAAA 59.997 52.381 14.63 0.00 44.74 3.13
520 532 2.551504 GCTAGGAAAGACCGGTGGAAAA 60.552 50.000 14.63 0.00 44.74 2.29
521 533 1.977056 AGGAAAGACCGGTGGAAAAC 58.023 50.000 14.63 0.00 44.74 2.43
522 534 1.213430 AGGAAAGACCGGTGGAAAACA 59.787 47.619 14.63 0.00 44.74 2.83
523 535 2.025898 GGAAAGACCGGTGGAAAACAA 58.974 47.619 14.63 0.00 0.00 2.83
524 536 2.427812 GGAAAGACCGGTGGAAAACAAA 59.572 45.455 14.63 0.00 0.00 2.83
525 537 3.119065 GGAAAGACCGGTGGAAAACAAAA 60.119 43.478 14.63 0.00 0.00 2.44
526 538 4.496360 GAAAGACCGGTGGAAAACAAAAA 58.504 39.130 14.63 0.00 0.00 1.94
527 539 3.513680 AGACCGGTGGAAAACAAAAAC 57.486 42.857 14.63 0.00 0.00 2.43
528 540 2.159352 AGACCGGTGGAAAACAAAAACG 60.159 45.455 14.63 0.00 0.00 3.60
529 541 1.545136 ACCGGTGGAAAACAAAAACGT 59.455 42.857 6.12 0.00 0.00 3.99
530 542 2.186891 CCGGTGGAAAACAAAAACGTC 58.813 47.619 0.00 0.00 0.00 4.34
531 543 2.415625 CCGGTGGAAAACAAAAACGTCA 60.416 45.455 0.00 0.00 0.00 4.35
532 544 3.243336 CGGTGGAAAACAAAAACGTCAA 58.757 40.909 0.00 0.00 0.00 3.18
533 545 3.673809 CGGTGGAAAACAAAAACGTCAAA 59.326 39.130 0.00 0.00 0.00 2.69
534 546 4.150098 CGGTGGAAAACAAAAACGTCAAAA 59.850 37.500 0.00 0.00 0.00 2.44
535 547 5.333111 CGGTGGAAAACAAAAACGTCAAAAA 60.333 36.000 0.00 0.00 0.00 1.94
565 577 3.797451 AAAAACCCGTTAAAAAGCCGA 57.203 38.095 0.00 0.00 0.00 5.54
566 578 3.358707 AAAACCCGTTAAAAAGCCGAG 57.641 42.857 0.00 0.00 0.00 4.63
567 579 2.259266 AACCCGTTAAAAAGCCGAGA 57.741 45.000 0.00 0.00 0.00 4.04
568 580 2.259266 ACCCGTTAAAAAGCCGAGAA 57.741 45.000 0.00 0.00 0.00 2.87
569 581 1.875514 ACCCGTTAAAAAGCCGAGAAC 59.124 47.619 0.00 0.00 0.00 3.01
570 582 1.136169 CCCGTTAAAAAGCCGAGAACG 60.136 52.381 0.00 0.00 41.83 3.95
571 583 1.587991 CGTTAAAAAGCCGAGAACGC 58.412 50.000 0.00 0.00 36.80 4.84
572 584 1.587991 GTTAAAAAGCCGAGAACGCG 58.412 50.000 3.53 3.53 38.29 6.01
582 594 4.612412 AGAACGCGGGCGGACAAA 62.612 61.111 18.03 0.00 44.69 2.83
583 595 3.428282 GAACGCGGGCGGACAAAT 61.428 61.111 18.03 0.00 44.69 2.32
584 596 2.047083 AACGCGGGCGGACAAATA 60.047 55.556 18.03 0.00 44.69 1.40
585 597 1.637478 GAACGCGGGCGGACAAATAA 61.637 55.000 18.03 0.00 44.69 1.40
586 598 1.235948 AACGCGGGCGGACAAATAAA 61.236 50.000 18.03 0.00 44.69 1.40
587 599 1.235948 ACGCGGGCGGACAAATAAAA 61.236 50.000 18.03 0.00 44.69 1.52
588 600 0.109689 CGCGGGCGGACAAATAAAAA 60.110 50.000 4.92 0.00 35.56 1.94
608 620 5.612725 AAAAACAAAATTCAGAGGGAGCA 57.387 34.783 0.00 0.00 0.00 4.26
609 621 4.590850 AAACAAAATTCAGAGGGAGCAC 57.409 40.909 0.00 0.00 0.00 4.40
610 622 2.519013 ACAAAATTCAGAGGGAGCACC 58.481 47.619 0.00 0.00 40.67 5.01
637 649 2.817834 GCACGTGGCGAATGGCTA 60.818 61.111 18.88 0.00 42.94 3.93
638 650 2.395360 GCACGTGGCGAATGGCTAA 61.395 57.895 18.88 0.00 42.94 3.09
639 651 1.715585 CACGTGGCGAATGGCTAAG 59.284 57.895 7.95 0.00 42.94 2.18
640 652 0.739462 CACGTGGCGAATGGCTAAGA 60.739 55.000 7.95 0.00 42.94 2.10
641 653 0.460284 ACGTGGCGAATGGCTAAGAG 60.460 55.000 0.00 0.00 42.94 2.85
642 654 1.766143 CGTGGCGAATGGCTAAGAGC 61.766 60.000 0.00 0.00 42.94 4.09
643 655 1.521457 TGGCGAATGGCTAAGAGCG 60.521 57.895 0.00 0.00 43.62 5.03
644 656 2.628657 GCGAATGGCTAAGAGCGC 59.371 61.111 0.00 0.00 43.62 5.92
645 657 2.923854 CGAATGGCTAAGAGCGCG 59.076 61.111 0.00 0.00 43.62 6.86
646 658 2.628657 GAATGGCTAAGAGCGCGC 59.371 61.111 26.66 26.66 43.62 6.86
647 659 2.886782 GAATGGCTAAGAGCGCGCC 61.887 63.158 30.33 19.60 43.62 6.53
650 662 3.567797 GGCTAAGAGCGCGCCAAG 61.568 66.667 30.33 20.26 43.62 3.61
651 663 2.815647 GCTAAGAGCGCGCCAAGT 60.816 61.111 30.33 9.44 0.00 3.16
652 664 3.084579 CTAAGAGCGCGCCAAGTG 58.915 61.111 30.33 12.20 0.00 3.16
653 665 2.434185 TAAGAGCGCGCCAAGTGG 60.434 61.111 30.33 0.00 38.53 4.00
663 675 2.434884 CCAAGTGGCGCTGATCGT 60.435 61.111 7.64 0.00 41.07 3.73
664 676 2.034879 CCAAGTGGCGCTGATCGTT 61.035 57.895 7.64 0.00 41.07 3.85
665 677 1.133253 CAAGTGGCGCTGATCGTTG 59.867 57.895 7.64 0.00 41.07 4.10
666 678 2.680913 AAGTGGCGCTGATCGTTGC 61.681 57.895 7.64 0.00 41.07 4.17
672 684 2.510238 GCTGATCGTTGCGAGGCT 60.510 61.111 0.00 0.00 39.91 4.58
673 685 2.103042 GCTGATCGTTGCGAGGCTT 61.103 57.895 0.00 0.00 39.91 4.35
674 686 2.002127 CTGATCGTTGCGAGGCTTC 58.998 57.895 0.00 0.00 39.91 3.86
675 687 1.424493 CTGATCGTTGCGAGGCTTCC 61.424 60.000 0.00 0.00 39.91 3.46
676 688 1.447838 GATCGTTGCGAGGCTTCCA 60.448 57.895 0.00 0.00 39.91 3.53
677 689 1.003839 ATCGTTGCGAGGCTTCCAA 60.004 52.632 0.00 0.00 39.91 3.53
678 690 0.605319 ATCGTTGCGAGGCTTCCAAA 60.605 50.000 2.89 0.00 39.91 3.28
679 691 0.816018 TCGTTGCGAGGCTTCCAAAA 60.816 50.000 2.89 0.00 0.00 2.44
680 692 0.385974 CGTTGCGAGGCTTCCAAAAG 60.386 55.000 2.89 0.00 35.47 2.27
681 693 0.951558 GTTGCGAGGCTTCCAAAAGA 59.048 50.000 2.89 0.00 34.14 2.52
682 694 1.068954 GTTGCGAGGCTTCCAAAAGAG 60.069 52.381 2.89 0.00 34.14 2.85
683 695 1.237285 TGCGAGGCTTCCAAAAGAGC 61.237 55.000 0.00 0.00 34.14 4.09
684 696 1.790387 CGAGGCTTCCAAAAGAGCG 59.210 57.895 0.00 0.00 34.14 5.03
685 697 1.503994 GAGGCTTCCAAAAGAGCGC 59.496 57.895 0.00 0.00 34.14 5.92
686 698 0.957888 GAGGCTTCCAAAAGAGCGCT 60.958 55.000 11.27 11.27 34.14 5.92
687 699 0.957888 AGGCTTCCAAAAGAGCGCTC 60.958 55.000 30.01 30.01 34.14 5.03
688 700 1.133458 GCTTCCAAAAGAGCGCTCG 59.867 57.895 30.39 16.68 34.14 5.03
689 701 1.569479 GCTTCCAAAAGAGCGCTCGT 61.569 55.000 30.39 25.69 34.14 4.18
690 702 0.868406 CTTCCAAAAGAGCGCTCGTT 59.132 50.000 29.21 29.21 34.14 3.85
691 703 2.066262 CTTCCAAAAGAGCGCTCGTTA 58.934 47.619 33.37 18.88 34.14 3.18
692 704 2.157834 TCCAAAAGAGCGCTCGTTAA 57.842 45.000 33.37 21.00 31.33 2.01
693 705 2.695359 TCCAAAAGAGCGCTCGTTAAT 58.305 42.857 33.37 19.56 31.33 1.40
694 706 3.071479 TCCAAAAGAGCGCTCGTTAATT 58.929 40.909 33.37 19.31 31.33 1.40
695 707 4.247258 TCCAAAAGAGCGCTCGTTAATTA 58.753 39.130 33.37 18.86 31.33 1.40
696 708 4.328983 TCCAAAAGAGCGCTCGTTAATTAG 59.671 41.667 33.37 21.07 31.33 1.73
697 709 4.092968 CCAAAAGAGCGCTCGTTAATTAGT 59.907 41.667 33.37 17.52 31.33 2.24
698 710 5.390567 CCAAAAGAGCGCTCGTTAATTAGTT 60.391 40.000 33.37 16.86 31.33 2.24
699 711 4.842139 AAGAGCGCTCGTTAATTAGTTG 57.158 40.909 30.39 0.00 34.09 3.16
700 712 3.846360 AGAGCGCTCGTTAATTAGTTGT 58.154 40.909 30.39 6.45 34.09 3.32
701 713 4.243270 AGAGCGCTCGTTAATTAGTTGTT 58.757 39.130 30.39 5.98 34.09 2.83
702 714 4.326548 AGAGCGCTCGTTAATTAGTTGTTC 59.673 41.667 30.39 2.34 34.09 3.18
703 715 4.243270 AGCGCTCGTTAATTAGTTGTTCT 58.757 39.130 2.64 0.00 0.00 3.01
704 716 4.326548 AGCGCTCGTTAATTAGTTGTTCTC 59.673 41.667 2.64 0.00 0.00 2.87
705 717 4.775083 GCGCTCGTTAATTAGTTGTTCTCG 60.775 45.833 0.00 0.00 0.00 4.04
706 718 4.566177 GCTCGTTAATTAGTTGTTCTCGC 58.434 43.478 0.00 0.00 0.00 5.03
707 719 4.775083 GCTCGTTAATTAGTTGTTCTCGCG 60.775 45.833 0.00 0.00 0.00 5.87
721 733 4.430765 CGCGTGCCCCTCTACGTT 62.431 66.667 0.00 0.00 41.98 3.99
728 740 1.826720 TGCCCCTCTACGTTCGTAAAT 59.173 47.619 0.00 0.00 0.00 1.40
731 743 3.686241 GCCCCTCTACGTTCGTAAATTTT 59.314 43.478 0.00 0.00 0.00 1.82
747 759 2.336341 TTTTTCATTCTGCCGGCGT 58.664 47.368 23.90 4.59 0.00 5.68
950 4547 1.484240 CTCCCGCCTTCTCAAATCTCT 59.516 52.381 0.00 0.00 0.00 3.10
988 4590 1.388065 CGCACCTCCTCCTACCAGAG 61.388 65.000 0.00 0.00 0.00 3.35
990 4592 1.045911 CACCTCCTCCTACCAGAGCC 61.046 65.000 0.00 0.00 32.17 4.70
991 4593 1.311403 CCTCCTCCTACCAGAGCCA 59.689 63.158 0.00 0.00 32.17 4.75
992 4594 1.045911 CCTCCTCCTACCAGAGCCAC 61.046 65.000 0.00 0.00 32.17 5.01
1383 4998 1.607467 GCTGCCCAACATCAACCCT 60.607 57.895 0.00 0.00 0.00 4.34
1405 5020 1.975327 CTGCTCCCCAAGAAGACGA 59.025 57.895 0.00 0.00 31.23 4.20
1498 5124 6.404403 CCAGTGCTTCGTAGTAGAATTAGTGA 60.404 42.308 0.00 0.00 0.00 3.41
1602 5386 6.202954 CAGTAAATTCTTTCTCTGTTGTCCGT 59.797 38.462 0.00 0.00 0.00 4.69
1711 5495 3.381908 ACAAATTCACCTGGCGTTGTTTA 59.618 39.130 0.00 0.00 0.00 2.01
1713 5497 4.864704 AATTCACCTGGCGTTGTTTAAT 57.135 36.364 0.00 0.00 0.00 1.40
1714 5498 5.968528 AATTCACCTGGCGTTGTTTAATA 57.031 34.783 0.00 0.00 0.00 0.98
1715 5499 5.560966 ATTCACCTGGCGTTGTTTAATAG 57.439 39.130 0.00 0.00 0.00 1.73
1737 5522 1.602311 AGTCAGTTGCAAGCTGAAGG 58.398 50.000 24.01 5.84 43.57 3.46
1802 5587 7.856145 AGTATGATTTCAGGTTCAGACATTC 57.144 36.000 0.00 0.00 36.72 2.67
1939 5991 6.656270 TGTTTACTGCTCATTGAATCTGACAT 59.344 34.615 0.00 0.00 0.00 3.06
2306 6377 1.703411 AGGCCTCTAGCTGATGAGAC 58.297 55.000 0.00 3.68 43.05 3.36
2393 6464 3.502191 TCGTCAAAAATATTGGCTGCC 57.498 42.857 12.87 12.87 0.00 4.85
2440 6511 1.929836 CTAGTGCCTGCGATCTGTTTC 59.070 52.381 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 0.882927 CGTGCCTCCTTGGAAACGAA 60.883 55.000 11.40 0.00 44.80 3.85
98 99 0.664767 GTGCTTTCGCGAGAGTCACT 60.665 55.000 29.26 0.00 43.69 3.41
126 127 0.721483 CGGTTTTGCTTTCGCGAGAC 60.721 55.000 9.59 3.29 41.84 3.36
234 239 0.949105 GGTTTTGCTTCCGCGAGAGA 60.949 55.000 8.23 0.00 39.65 3.10
375 387 2.430244 TTTCGCGAGAGTCACGGC 60.430 61.111 9.59 3.61 43.69 5.68
387 399 2.300066 GGCACGGTTTTGCTTTCGC 61.300 57.895 0.00 0.00 42.56 4.70
388 400 0.660300 GAGGCACGGTTTTGCTTTCG 60.660 55.000 0.00 0.00 42.56 3.46
389 401 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
390 402 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
391 403 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
392 404 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
393 405 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
394 406 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
395 407 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
400 412 2.537792 TTACTTCCGCGAGAGGCACG 62.538 60.000 8.23 0.00 43.84 5.34
401 413 0.389426 TTTACTTCCGCGAGAGGCAC 60.389 55.000 8.23 0.00 43.84 5.01
402 414 0.319083 TTTTACTTCCGCGAGAGGCA 59.681 50.000 8.23 0.00 43.84 4.75
403 415 0.720027 GTTTTACTTCCGCGAGAGGC 59.280 55.000 8.23 0.00 38.69 4.70
404 416 1.356938 GGTTTTACTTCCGCGAGAGG 58.643 55.000 8.23 6.41 0.00 3.69
405 417 0.989890 CGGTTTTACTTCCGCGAGAG 59.010 55.000 8.23 7.50 40.28 3.20
406 418 3.111536 CGGTTTTACTTCCGCGAGA 57.888 52.632 8.23 0.00 40.28 4.04
412 424 2.985139 CGAGAGTCACGGTTTTACTTCC 59.015 50.000 1.62 0.00 0.00 3.46
413 425 2.407696 GCGAGAGTCACGGTTTTACTTC 59.592 50.000 11.95 0.00 0.00 3.01
414 426 2.401351 GCGAGAGTCACGGTTTTACTT 58.599 47.619 11.95 0.00 0.00 2.24
415 427 1.665161 CGCGAGAGTCACGGTTTTACT 60.665 52.381 11.95 0.00 0.00 2.24
416 428 0.706729 CGCGAGAGTCACGGTTTTAC 59.293 55.000 11.95 0.00 0.00 2.01
417 429 0.592637 TCGCGAGAGTCACGGTTTTA 59.407 50.000 3.71 0.00 34.84 1.52
418 430 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
419 431 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
420 432 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
421 433 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
422 434 1.801913 CCTTTCGCGAGAGTCACGG 60.802 63.158 23.28 6.69 43.69 4.94
423 435 0.386858 TTCCTTTCGCGAGAGTCACG 60.387 55.000 23.28 9.67 43.69 4.35
424 436 1.779569 TTTCCTTTCGCGAGAGTCAC 58.220 50.000 23.28 0.00 43.69 3.67
425 437 2.519377 TTTTCCTTTCGCGAGAGTCA 57.481 45.000 23.28 8.47 43.69 3.41
486 498 8.079809 CGGTCTTTCCTAGCTTTTTGATAAAAA 58.920 33.333 0.00 0.00 37.99 1.94
487 499 7.308951 CCGGTCTTTCCTAGCTTTTTGATAAAA 60.309 37.037 0.00 0.00 0.00 1.52
488 500 6.150474 CCGGTCTTTCCTAGCTTTTTGATAAA 59.850 38.462 0.00 0.00 0.00 1.40
489 501 5.646360 CCGGTCTTTCCTAGCTTTTTGATAA 59.354 40.000 0.00 0.00 0.00 1.75
490 502 5.183228 CCGGTCTTTCCTAGCTTTTTGATA 58.817 41.667 0.00 0.00 0.00 2.15
491 503 4.010349 CCGGTCTTTCCTAGCTTTTTGAT 58.990 43.478 0.00 0.00 0.00 2.57
492 504 3.181448 ACCGGTCTTTCCTAGCTTTTTGA 60.181 43.478 0.00 0.00 0.00 2.69
493 505 3.058224 CACCGGTCTTTCCTAGCTTTTTG 60.058 47.826 2.59 0.00 0.00 2.44
494 506 3.146847 CACCGGTCTTTCCTAGCTTTTT 58.853 45.455 2.59 0.00 0.00 1.94
495 507 2.552373 CCACCGGTCTTTCCTAGCTTTT 60.552 50.000 2.59 0.00 0.00 2.27
496 508 1.003233 CCACCGGTCTTTCCTAGCTTT 59.997 52.381 2.59 0.00 0.00 3.51
497 509 0.613777 CCACCGGTCTTTCCTAGCTT 59.386 55.000 2.59 0.00 0.00 3.74
498 510 0.252103 TCCACCGGTCTTTCCTAGCT 60.252 55.000 2.59 0.00 0.00 3.32
499 511 0.611714 TTCCACCGGTCTTTCCTAGC 59.388 55.000 2.59 0.00 0.00 3.42
500 512 3.072211 GTTTTCCACCGGTCTTTCCTAG 58.928 50.000 2.59 0.00 0.00 3.02
501 513 2.438763 TGTTTTCCACCGGTCTTTCCTA 59.561 45.455 2.59 0.00 0.00 2.94
502 514 1.213430 TGTTTTCCACCGGTCTTTCCT 59.787 47.619 2.59 0.00 0.00 3.36
503 515 1.682740 TGTTTTCCACCGGTCTTTCC 58.317 50.000 2.59 0.00 0.00 3.13
504 516 3.786516 TTTGTTTTCCACCGGTCTTTC 57.213 42.857 2.59 0.00 0.00 2.62
505 517 4.247258 GTTTTTGTTTTCCACCGGTCTTT 58.753 39.130 2.59 0.00 0.00 2.52
506 518 3.673866 CGTTTTTGTTTTCCACCGGTCTT 60.674 43.478 2.59 0.00 0.00 3.01
507 519 2.159352 CGTTTTTGTTTTCCACCGGTCT 60.159 45.455 2.59 0.00 0.00 3.85
508 520 2.186891 CGTTTTTGTTTTCCACCGGTC 58.813 47.619 2.59 0.00 0.00 4.79
509 521 1.545136 ACGTTTTTGTTTTCCACCGGT 59.455 42.857 0.00 0.00 0.00 5.28
510 522 2.186891 GACGTTTTTGTTTTCCACCGG 58.813 47.619 0.00 0.00 0.00 5.28
511 523 2.864968 TGACGTTTTTGTTTTCCACCG 58.135 42.857 0.00 0.00 0.00 4.94
512 524 5.593183 TTTTGACGTTTTTGTTTTCCACC 57.407 34.783 0.00 0.00 0.00 4.61
545 557 3.380954 TCTCGGCTTTTTAACGGGTTTTT 59.619 39.130 0.00 0.00 0.00 1.94
546 558 2.950975 TCTCGGCTTTTTAACGGGTTTT 59.049 40.909 0.00 0.00 0.00 2.43
547 559 2.574450 TCTCGGCTTTTTAACGGGTTT 58.426 42.857 0.00 0.00 0.00 3.27
548 560 2.259266 TCTCGGCTTTTTAACGGGTT 57.741 45.000 0.00 0.00 0.00 4.11
549 561 1.875514 GTTCTCGGCTTTTTAACGGGT 59.124 47.619 0.00 0.00 0.00 5.28
550 562 1.136169 CGTTCTCGGCTTTTTAACGGG 60.136 52.381 0.00 0.00 39.27 5.28
551 563 1.723701 GCGTTCTCGGCTTTTTAACGG 60.724 52.381 7.85 0.00 42.24 4.44
552 564 1.587991 GCGTTCTCGGCTTTTTAACG 58.412 50.000 0.00 0.00 44.18 3.18
553 565 1.587991 CGCGTTCTCGGCTTTTTAAC 58.412 50.000 0.00 0.00 37.56 2.01
554 566 0.513820 CCGCGTTCTCGGCTTTTTAA 59.486 50.000 4.92 0.00 43.18 1.52
555 567 2.155665 CCGCGTTCTCGGCTTTTTA 58.844 52.632 4.92 0.00 43.18 1.52
556 568 2.943653 CCGCGTTCTCGGCTTTTT 59.056 55.556 4.92 0.00 43.18 1.94
565 577 2.510064 TATTTGTCCGCCCGCGTTCT 62.510 55.000 4.92 0.00 37.81 3.01
566 578 1.637478 TTATTTGTCCGCCCGCGTTC 61.637 55.000 4.92 1.40 37.81 3.95
567 579 1.235948 TTTATTTGTCCGCCCGCGTT 61.236 50.000 4.92 0.00 37.81 4.84
568 580 1.235948 TTTTATTTGTCCGCCCGCGT 61.236 50.000 4.92 0.00 37.81 6.01
569 581 0.109689 TTTTTATTTGTCCGCCCGCG 60.110 50.000 0.00 0.00 39.44 6.46
570 582 3.796667 TTTTTATTTGTCCGCCCGC 57.203 47.368 0.00 0.00 0.00 6.13
586 598 5.359756 GTGCTCCCTCTGAATTTTGTTTTT 58.640 37.500 0.00 0.00 0.00 1.94
587 599 4.202253 GGTGCTCCCTCTGAATTTTGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
588 600 3.321968 GGTGCTCCCTCTGAATTTTGTTT 59.678 43.478 0.00 0.00 0.00 2.83
589 601 2.893489 GGTGCTCCCTCTGAATTTTGTT 59.107 45.455 0.00 0.00 0.00 2.83
590 602 2.519013 GGTGCTCCCTCTGAATTTTGT 58.481 47.619 0.00 0.00 0.00 2.83
620 632 2.309764 CTTAGCCATTCGCCACGTGC 62.310 60.000 10.91 4.89 38.78 5.34
621 633 0.739462 TCTTAGCCATTCGCCACGTG 60.739 55.000 9.08 9.08 38.78 4.49
622 634 0.460284 CTCTTAGCCATTCGCCACGT 60.460 55.000 0.00 0.00 38.78 4.49
623 635 1.766143 GCTCTTAGCCATTCGCCACG 61.766 60.000 0.00 0.00 38.78 4.94
624 636 1.766143 CGCTCTTAGCCATTCGCCAC 61.766 60.000 0.00 0.00 38.18 5.01
625 637 1.521457 CGCTCTTAGCCATTCGCCA 60.521 57.895 0.00 0.00 38.18 5.69
626 638 2.886782 GCGCTCTTAGCCATTCGCC 61.887 63.158 0.00 0.00 38.18 5.54
627 639 2.628657 GCGCTCTTAGCCATTCGC 59.371 61.111 0.00 0.00 38.18 4.70
628 640 2.923854 CGCGCTCTTAGCCATTCG 59.076 61.111 5.56 0.00 38.18 3.34
629 641 2.628657 GCGCGCTCTTAGCCATTC 59.371 61.111 26.67 0.00 38.18 2.67
634 646 2.815647 ACTTGGCGCGCTCTTAGC 60.816 61.111 32.29 13.79 38.02 3.09
635 647 2.456119 CCACTTGGCGCGCTCTTAG 61.456 63.158 32.29 22.77 0.00 2.18
636 648 2.434185 CCACTTGGCGCGCTCTTA 60.434 61.111 32.29 12.39 0.00 2.10
646 658 2.034879 AACGATCAGCGCCACTTGG 61.035 57.895 2.29 0.00 46.04 3.61
647 659 1.133253 CAACGATCAGCGCCACTTG 59.867 57.895 2.29 0.00 46.04 3.16
648 660 2.680913 GCAACGATCAGCGCCACTT 61.681 57.895 2.29 0.00 46.04 3.16
649 661 3.121030 GCAACGATCAGCGCCACT 61.121 61.111 2.29 0.00 46.04 4.00
655 667 2.029904 GAAGCCTCGCAACGATCAGC 62.030 60.000 0.00 0.00 34.61 4.26
656 668 1.424493 GGAAGCCTCGCAACGATCAG 61.424 60.000 0.00 0.00 34.61 2.90
657 669 1.447838 GGAAGCCTCGCAACGATCA 60.448 57.895 0.00 0.00 34.61 2.92
658 670 1.019278 TTGGAAGCCTCGCAACGATC 61.019 55.000 0.00 0.00 34.61 3.69
659 671 0.605319 TTTGGAAGCCTCGCAACGAT 60.605 50.000 0.00 0.00 34.61 3.73
660 672 0.816018 TTTTGGAAGCCTCGCAACGA 60.816 50.000 0.00 0.00 0.00 3.85
661 673 0.385974 CTTTTGGAAGCCTCGCAACG 60.386 55.000 0.00 0.00 0.00 4.10
662 674 0.951558 TCTTTTGGAAGCCTCGCAAC 59.048 50.000 0.00 0.00 32.75 4.17
663 675 1.238439 CTCTTTTGGAAGCCTCGCAA 58.762 50.000 0.00 0.00 32.75 4.85
664 676 1.237285 GCTCTTTTGGAAGCCTCGCA 61.237 55.000 0.00 0.00 32.75 5.10
665 677 1.503994 GCTCTTTTGGAAGCCTCGC 59.496 57.895 0.00 0.00 32.75 5.03
666 678 1.790387 CGCTCTTTTGGAAGCCTCG 59.210 57.895 0.00 0.00 32.75 4.63
667 679 0.957888 AGCGCTCTTTTGGAAGCCTC 60.958 55.000 2.64 0.00 32.75 4.70
668 680 0.957888 GAGCGCTCTTTTGGAAGCCT 60.958 55.000 29.88 0.00 32.75 4.58
669 681 1.503994 GAGCGCTCTTTTGGAAGCC 59.496 57.895 29.88 0.00 32.75 4.35
670 682 1.133458 CGAGCGCTCTTTTGGAAGC 59.867 57.895 32.88 5.58 32.75 3.86
671 683 0.868406 AACGAGCGCTCTTTTGGAAG 59.132 50.000 32.88 18.03 0.00 3.46
672 684 2.157834 TAACGAGCGCTCTTTTGGAA 57.842 45.000 30.67 12.94 0.00 3.53
673 685 2.157834 TTAACGAGCGCTCTTTTGGA 57.842 45.000 30.67 16.24 0.00 3.53
674 686 3.471495 AATTAACGAGCGCTCTTTTGG 57.529 42.857 30.67 19.29 0.00 3.28
675 687 5.204673 ACTAATTAACGAGCGCTCTTTTG 57.795 39.130 30.67 19.65 0.00 2.44
676 688 5.178809 ACAACTAATTAACGAGCGCTCTTTT 59.821 36.000 30.67 25.26 0.00 2.27
677 689 4.689345 ACAACTAATTAACGAGCGCTCTTT 59.311 37.500 32.88 30.78 0.00 2.52
678 690 4.243270 ACAACTAATTAACGAGCGCTCTT 58.757 39.130 32.88 25.86 0.00 2.85
679 691 3.846360 ACAACTAATTAACGAGCGCTCT 58.154 40.909 32.88 19.27 0.00 4.09
680 692 4.326548 AGAACAACTAATTAACGAGCGCTC 59.673 41.667 27.64 27.64 0.00 5.03
681 693 4.243270 AGAACAACTAATTAACGAGCGCT 58.757 39.130 11.27 11.27 0.00 5.92
682 694 4.566177 GAGAACAACTAATTAACGAGCGC 58.434 43.478 0.00 0.00 0.00 5.92
683 695 4.775083 GCGAGAACAACTAATTAACGAGCG 60.775 45.833 0.00 0.00 0.00 5.03
684 696 4.566177 GCGAGAACAACTAATTAACGAGC 58.434 43.478 0.00 0.00 0.00 5.03
685 697 4.322804 ACGCGAGAACAACTAATTAACGAG 59.677 41.667 15.93 0.00 0.00 4.18
686 698 4.088923 CACGCGAGAACAACTAATTAACGA 59.911 41.667 15.93 0.00 0.00 3.85
687 699 4.312403 CACGCGAGAACAACTAATTAACG 58.688 43.478 15.93 0.00 0.00 3.18
688 700 4.079710 GCACGCGAGAACAACTAATTAAC 58.920 43.478 15.93 0.00 0.00 2.01
689 701 3.123959 GGCACGCGAGAACAACTAATTAA 59.876 43.478 15.93 0.00 0.00 1.40
690 702 2.669434 GGCACGCGAGAACAACTAATTA 59.331 45.455 15.93 0.00 0.00 1.40
691 703 1.463444 GGCACGCGAGAACAACTAATT 59.537 47.619 15.93 0.00 0.00 1.40
692 704 1.076332 GGCACGCGAGAACAACTAAT 58.924 50.000 15.93 0.00 0.00 1.73
693 705 0.947180 GGGCACGCGAGAACAACTAA 60.947 55.000 15.93 0.00 0.00 2.24
694 706 1.373748 GGGCACGCGAGAACAACTA 60.374 57.895 15.93 0.00 0.00 2.24
695 707 2.665185 GGGCACGCGAGAACAACT 60.665 61.111 15.93 0.00 0.00 3.16
696 708 3.723348 GGGGCACGCGAGAACAAC 61.723 66.667 15.93 0.00 0.00 3.32
705 717 2.508663 GAACGTAGAGGGGCACGC 60.509 66.667 0.00 0.00 41.80 5.34
706 718 1.647545 TACGAACGTAGAGGGGCACG 61.648 60.000 2.89 0.00 43.63 5.34
707 719 0.527565 TTACGAACGTAGAGGGGCAC 59.472 55.000 7.12 0.00 31.71 5.01
731 743 2.331893 CCACGCCGGCAGAATGAAA 61.332 57.895 28.98 0.00 39.69 2.69
747 759 3.015145 GGCCCAGTTAGAGCCCCA 61.015 66.667 0.00 0.00 41.00 4.96
774 786 2.850828 GATGCCCCAGCTCAGCCTTT 62.851 60.000 0.00 0.00 40.80 3.11
801 813 1.815421 GAATGGACGGCTGCGATGT 60.815 57.895 0.00 0.00 0.00 3.06
950 4547 0.530650 GGAGAGATTTGGCGCGATGA 60.531 55.000 12.10 0.00 0.00 2.92
1299 4914 3.309436 CTGGTCGTTCCGGATGGCA 62.309 63.158 4.15 0.00 45.09 4.92
1383 4998 1.073722 CTTCTTGGGGAGCAGCACA 59.926 57.895 0.00 0.00 0.00 4.57
1405 5020 1.536662 ACTTGGGCTCCTTCTCCGT 60.537 57.895 0.00 0.00 0.00 4.69
1498 5124 4.189231 GACACCATTACCTAAACAGCGAT 58.811 43.478 0.00 0.00 0.00 4.58
1602 5386 3.145286 TGCAAAATCATGAACAGACGGA 58.855 40.909 0.00 0.00 0.00 4.69
1699 5483 6.367969 ACTGACTTACTATTAAACAACGCCAG 59.632 38.462 0.00 0.00 0.00 4.85
1711 5495 5.551233 TCAGCTTGCAACTGACTTACTATT 58.449 37.500 20.65 0.00 39.21 1.73
1713 5497 4.600692 TCAGCTTGCAACTGACTTACTA 57.399 40.909 20.65 4.73 39.21 1.82
1714 5498 3.475566 TCAGCTTGCAACTGACTTACT 57.524 42.857 20.65 0.00 39.21 2.24
1715 5499 3.058639 CCTTCAGCTTGCAACTGACTTAC 60.059 47.826 22.90 0.00 43.64 2.34
1737 5522 4.554036 GGGGATGCTCCACGGCTC 62.554 72.222 4.85 0.00 38.64 4.70
1802 5587 7.254658 GGGATTTGGTATTACTTGACATACACG 60.255 40.741 0.00 0.00 0.00 4.49
1905 5956 3.331150 TGAGCAGTAAACACAATACGGG 58.669 45.455 0.00 0.00 0.00 5.28
1939 5991 7.786046 TTCTAGTAACCAGACCAAGTGAATA 57.214 36.000 0.00 0.00 0.00 1.75
2344 6415 3.236816 GAGCAAATGTGTGGAAATCGTG 58.763 45.455 0.00 0.00 0.00 4.35
2393 6464 2.745821 ACAACAGCAGTGCATCATACAG 59.254 45.455 19.20 1.08 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.