Multiple sequence alignment - TraesCS5D01G443900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G443900 chr5D 100.000 5850 0 0 1 5850 495062565 495068414 0.000000e+00 10804.0
1 TraesCS5D01G443900 chr5D 81.950 1169 180 22 2778 3935 430580868 430582016 0.000000e+00 961.0
2 TraesCS5D01G443900 chr5D 88.398 793 78 8 4903 5690 495062681 495063464 0.000000e+00 942.0
3 TraesCS5D01G443900 chr5D 88.398 793 78 8 117 900 495067467 495068254 0.000000e+00 942.0
4 TraesCS5D01G443900 chr5D 89.773 352 29 4 56 407 495070770 495071114 1.500000e-120 444.0
5 TraesCS5D01G443900 chr5D 87.569 362 37 6 552 909 495071154 495071511 4.220000e-111 412.0
6 TraesCS5D01G443900 chr5D 83.828 303 33 5 96 383 495144025 495144326 2.080000e-69 274.0
7 TraesCS5D01G443900 chr5D 81.057 227 31 7 1627 1846 520841555 520841334 2.800000e-38 171.0
8 TraesCS5D01G443900 chr5D 88.281 128 13 1 5687 5812 495071548 495071675 1.020000e-32 152.0
9 TraesCS5D01G443900 chr5D 96.000 50 2 0 1796 1845 520807256 520807207 1.350000e-11 82.4
10 TraesCS5D01G443900 chr5A 90.941 3466 231 26 2256 5687 619111054 619114470 0.000000e+00 4584.0
11 TraesCS5D01G443900 chr5A 94.962 1191 54 4 1 1189 619108776 619109962 0.000000e+00 1862.0
12 TraesCS5D01G443900 chr5A 92.197 1038 53 15 1190 2205 619110001 619111032 0.000000e+00 1443.0
13 TraesCS5D01G443900 chr5A 85.845 1095 123 16 117 1190 619113682 619114765 0.000000e+00 1134.0
14 TraesCS5D01G443900 chr5A 81.213 1171 189 20 2778 3935 546205656 546206808 0.000000e+00 915.0
15 TraesCS5D01G443900 chr5A 87.215 790 86 9 4903 5687 619108892 619109671 0.000000e+00 885.0
16 TraesCS5D01G443900 chr5A 79.704 1217 198 29 2735 3936 546686475 546685293 0.000000e+00 833.0
17 TraesCS5D01G443900 chr5A 82.609 299 37 4 91 375 619346161 619346458 3.500000e-62 250.0
18 TraesCS5D01G443900 chr5A 81.498 227 32 6 1627 1846 649367215 649366992 1.680000e-40 178.0
19 TraesCS5D01G443900 chr5A 84.921 126 17 1 5689 5812 619341097 619341222 6.150000e-25 126.0
20 TraesCS5D01G443900 chr5B 96.406 2226 63 6 2703 4927 611518057 611520266 0.000000e+00 3651.0
21 TraesCS5D01G443900 chr5B 90.895 648 52 5 5205 5850 611520265 611520907 0.000000e+00 863.0
22 TraesCS5D01G443900 chr5B 89.205 528 51 5 1 526 611727102 611727625 0.000000e+00 654.0
23 TraesCS5D01G443900 chr5B 90.123 486 42 4 415 900 611520267 611520746 1.380000e-175 627.0
24 TraesCS5D01G443900 chr5B 86.331 417 47 4 4903 5318 611727218 611727625 4.160000e-121 446.0
25 TraesCS5D01G443900 chr5B 88.418 354 39 1 56 407 611524576 611524929 5.420000e-115 425.0
26 TraesCS5D01G443900 chr5B 83.444 453 68 5 5232 5682 611524925 611525372 1.170000e-111 414.0
27 TraesCS5D01G443900 chr5B 77.533 454 76 13 4059 4510 521138896 521138467 3.500000e-62 250.0
28 TraesCS5D01G443900 chr5B 81.169 154 18 7 1699 1846 656470381 656470233 4.790000e-21 113.0
29 TraesCS5D01G443900 chr4A 80.726 1157 195 20 2794 3936 705431839 705430697 0.000000e+00 876.0
30 TraesCS5D01G443900 chr4A 79.898 1174 203 23 2780 3936 705436144 705437301 0.000000e+00 830.0
31 TraesCS5D01G443900 chr4A 90.000 50 5 0 2503 2552 705245693 705245742 1.360000e-06 65.8
32 TraesCS5D01G443900 chr4A 90.000 50 5 0 2503 2552 705434955 705434906 1.360000e-06 65.8
33 TraesCS5D01G443900 chr7D 82.353 561 93 3 3382 3936 22544853 22545413 3.170000e-132 483.0
34 TraesCS5D01G443900 chr2B 80.105 191 28 6 1636 1820 504319766 504319580 3.680000e-27 134.0
35 TraesCS5D01G443900 chr2A 88.235 102 12 0 91 192 548606595 548606696 7.960000e-24 122.0
36 TraesCS5D01G443900 chrUn 87.879 99 12 0 94 192 330078692 330078594 3.700000e-22 117.0
37 TraesCS5D01G443900 chr7B 82.222 135 18 6 1626 1756 113442508 113442376 1.720000e-20 111.0
38 TraesCS5D01G443900 chr2D 81.731 104 17 1 1879 1980 611888189 611888086 1.040000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G443900 chr5D 495062565 495068414 5849 False 10804.0 10804 100.00000 1 5850 1 chr5D.!!$F2 5849
1 TraesCS5D01G443900 chr5D 430580868 430582016 1148 False 961.0 961 81.95000 2778 3935 1 chr5D.!!$F1 1157
2 TraesCS5D01G443900 chr5D 495062681 495063464 783 False 942.0 942 88.39800 4903 5690 1 chr5D.!!$F3 787
3 TraesCS5D01G443900 chr5D 495067467 495071675 4208 False 487.5 942 88.50525 56 5812 4 chr5D.!!$F5 5756
4 TraesCS5D01G443900 chr5A 619108776 619114765 5989 False 1981.6 4584 90.23200 1 5687 5 chr5A.!!$F4 5686
5 TraesCS5D01G443900 chr5A 546205656 546206808 1152 False 915.0 915 81.21300 2778 3935 1 chr5A.!!$F1 1157
6 TraesCS5D01G443900 chr5A 546685293 546686475 1182 True 833.0 833 79.70400 2735 3936 1 chr5A.!!$R1 1201
7 TraesCS5D01G443900 chr5B 611518057 611525372 7315 False 1196.0 3651 89.85720 56 5850 5 chr5B.!!$F1 5794
8 TraesCS5D01G443900 chr5B 611727102 611727625 523 False 550.0 654 87.76800 1 5318 2 chr5B.!!$F2 5317
9 TraesCS5D01G443900 chr4A 705436144 705437301 1157 False 830.0 830 79.89800 2780 3936 1 chr4A.!!$F2 1156
10 TraesCS5D01G443900 chr4A 705430697 705434955 4258 True 470.9 876 85.36300 2503 3936 2 chr4A.!!$R1 1433
11 TraesCS5D01G443900 chr7D 22544853 22545413 560 False 483.0 483 82.35300 3382 3936 1 chr7D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 974 0.034960 GGCCAGGGAGAGACTTTTCC 60.035 60.0 0.00 0.00 0.00 3.13 F
2055 2126 0.240411 CCAGCAAAGCAGAAGCACTC 59.760 55.0 0.00 0.00 45.49 3.51 F
2650 2787 0.323360 AACAATACAGTGGCGCCCAT 60.323 50.0 26.77 9.79 35.28 4.00 F
3311 6249 0.524862 TAGCGACGTGTTCCTCCTTC 59.475 55.0 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 2406 0.104855 GAGAGCACCGTGGATGCATA 59.895 55.0 0.00 0.0 45.92 3.14 R
2894 5827 2.037772 GGAAGAGAGCAAGGTCTTGTCA 59.962 50.0 11.71 0.0 42.31 3.58 R
4408 7373 1.878656 CGAAGCTCTTCCACGACCCT 61.879 60.0 4.23 0.0 36.27 4.34 R
5270 16001 0.882927 TTGGCGAGGAAACAACGGAG 60.883 55.0 0.00 0.0 34.08 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.861572 TCTTCTGTTGTATCTTGTTACTGTCG 59.138 38.462 0.00 0.00 0.00 4.35
81 82 3.947910 TCTTGTTACTGTCGGTTAGGG 57.052 47.619 0.00 0.00 0.00 3.53
85 86 2.071540 GTTACTGTCGGTTAGGGTTGC 58.928 52.381 0.00 0.00 0.00 4.17
130 131 4.081087 TCAGAAGGGCCAGTGTTAGTAATC 60.081 45.833 6.18 0.00 0.00 1.75
279 281 5.877564 GCTTGATATACTAATCCAAGGGAGC 59.122 44.000 0.00 0.00 34.05 4.70
298 300 4.324099 GGAGCTGTATGGCTGGAATGATAT 60.324 45.833 0.00 0.00 43.20 1.63
413 422 5.413309 TTGAAGAAGGAGAAGGATCTGTC 57.587 43.478 0.00 0.00 35.54 3.51
802 812 3.432467 ACATCGTGTGTTAGTTGGGACAA 60.432 43.478 0.00 0.00 40.85 3.18
817 827 2.158696 GGGACAATTGATGGAGAGGAGG 60.159 54.545 13.59 0.00 0.00 4.30
830 840 2.693074 GAGAGGAGGCTAGAGAAGTTGG 59.307 54.545 0.00 0.00 0.00 3.77
842 852 2.162408 GAGAAGTTGGCAATTCCTTCCG 59.838 50.000 19.55 0.00 35.10 4.30
870 880 4.436584 GCTGATGATGACACTGTAAGCAAC 60.437 45.833 0.00 0.00 37.60 4.17
925 936 8.956426 TGGAACAAAACACTATTTCTCCATATC 58.044 33.333 0.00 0.00 31.25 1.63
926 937 8.956426 GGAACAAAACACTATTTCTCCATATCA 58.044 33.333 0.00 0.00 0.00 2.15
931 942 9.685276 AAAACACTATTTCTCCATATCATGTGA 57.315 29.630 0.00 0.00 0.00 3.58
932 943 8.668510 AACACTATTTCTCCATATCATGTGAC 57.331 34.615 0.00 0.00 0.00 3.67
933 944 8.027524 ACACTATTTCTCCATATCATGTGACT 57.972 34.615 0.00 0.00 0.00 3.41
934 945 9.147732 ACACTATTTCTCCATATCATGTGACTA 57.852 33.333 0.00 0.00 0.00 2.59
935 946 9.416794 CACTATTTCTCCATATCATGTGACTAC 57.583 37.037 0.00 0.00 0.00 2.73
963 974 0.034960 GGCCAGGGAGAGACTTTTCC 60.035 60.000 0.00 0.00 0.00 3.13
975 986 3.631250 AGACTTTTCCAGTTTTCAGGCA 58.369 40.909 0.00 0.00 35.01 4.75
996 1007 5.523916 GGCAGTTACGAATATGTGTTGAGAT 59.476 40.000 0.00 0.00 0.00 2.75
1031 1042 2.479656 CTCAAGCAACTTCAGCTCTGAC 59.520 50.000 0.00 0.00 42.53 3.51
1033 1044 1.876322 AGCAACTTCAGCTCTGACAC 58.124 50.000 0.00 0.00 38.01 3.67
1039 1050 0.319900 TTCAGCTCTGACACGAAGGC 60.320 55.000 0.00 0.00 39.66 4.35
1048 1059 2.549754 CTGACACGAAGGCTGTTGAAAT 59.450 45.455 0.00 0.00 0.00 2.17
1121 1132 7.499321 AACATCATGCAATTTTCACACATTT 57.501 28.000 0.00 0.00 0.00 2.32
1149 1160 8.926092 TGATGTTGTAGTCTAGTGCTCTATAT 57.074 34.615 0.00 0.00 0.00 0.86
1201 1250 6.664515 TGTGAACTTACTAAATTTCCTTGCG 58.335 36.000 0.00 0.00 0.00 4.85
1216 1265 4.513442 TCCTTGCGTAAGATACTGCAAAT 58.487 39.130 15.38 0.00 42.66 2.32
1217 1266 4.332543 TCCTTGCGTAAGATACTGCAAATG 59.667 41.667 15.38 11.55 42.66 2.32
1220 1269 5.712217 TGCGTAAGATACTGCAAATGTAC 57.288 39.130 0.00 0.00 43.02 2.90
1242 1294 8.503196 TGTACTGTTTTGCTCAACAATACTATG 58.497 33.333 16.09 2.74 39.19 2.23
1245 1297 6.676950 TGTTTTGCTCAACAATACTATGTGG 58.323 36.000 0.00 0.00 39.93 4.17
1246 1298 6.488344 TGTTTTGCTCAACAATACTATGTGGA 59.512 34.615 0.00 0.00 39.93 4.02
1247 1299 6.494893 TTTGCTCAACAATACTATGTGGAC 57.505 37.500 0.00 0.00 38.31 4.02
1249 1301 5.744171 TGCTCAACAATACTATGTGGACAT 58.256 37.500 0.00 0.00 40.22 3.06
1251 1303 7.334858 TGCTCAACAATACTATGTGGACATAA 58.665 34.615 1.32 0.00 38.26 1.90
1252 1304 7.495606 TGCTCAACAATACTATGTGGACATAAG 59.504 37.037 1.32 0.00 38.26 1.73
1253 1305 7.519008 GCTCAACAATACTATGTGGACATAAGC 60.519 40.741 1.32 1.08 38.26 3.09
1254 1306 6.765989 TCAACAATACTATGTGGACATAAGCC 59.234 38.462 1.32 0.00 38.26 4.35
1255 1307 5.621193 ACAATACTATGTGGACATAAGCCC 58.379 41.667 1.32 0.00 38.26 5.19
1256 1308 5.369699 ACAATACTATGTGGACATAAGCCCT 59.630 40.000 1.32 0.00 38.26 5.19
1257 1309 3.845781 ACTATGTGGACATAAGCCCTG 57.154 47.619 1.32 0.00 38.26 4.45
1258 1310 3.115390 ACTATGTGGACATAAGCCCTGT 58.885 45.455 1.32 0.00 38.26 4.00
1276 1331 6.060788 GCCCTGTGAAGAAGATATTCTGATT 58.939 40.000 2.78 0.00 0.00 2.57
1286 1341 7.915930 AGAAGATATTCTGATTGGGATGGTAG 58.084 38.462 0.80 0.00 0.00 3.18
1319 1374 7.270779 TGATCAGAATATCTTCTTCACAGGTG 58.729 38.462 0.00 0.00 39.78 4.00
1359 1416 4.838486 GTCGTCGGCTCAGCGGAG 62.838 72.222 7.25 9.76 44.33 4.63
1368 1425 1.448922 GCTCAGCGGAGAGACGGTAT 61.449 60.000 18.66 0.00 44.26 2.73
1395 1452 2.840038 TGGAAGGAAGATAGCAGCAGAA 59.160 45.455 0.00 0.00 0.00 3.02
1414 1474 5.220284 GCAGAAAAGAAGTTTTGAACAGTGC 60.220 40.000 0.00 0.00 35.94 4.40
1416 1476 6.587608 CAGAAAAGAAGTTTTGAACAGTGCTT 59.412 34.615 0.00 0.00 35.94 3.91
1420 1480 5.585390 AGAAGTTTTGAACAGTGCTTGATG 58.415 37.500 0.00 0.00 0.00 3.07
1442 1502 1.726791 ACGAGCGCAGTGTGAAATAAG 59.273 47.619 11.47 0.00 0.00 1.73
1455 1515 1.831106 GAAATAAGGGGCACTTTGGGG 59.169 52.381 7.60 0.00 40.64 4.96
1456 1516 0.617535 AATAAGGGGCACTTTGGGGC 60.618 55.000 7.60 0.00 40.64 5.80
1474 1534 2.420967 GGGCCATACGGAAATACAGTGT 60.421 50.000 4.39 0.00 0.00 3.55
1475 1535 2.612212 GGCCATACGGAAATACAGTGTG 59.388 50.000 5.88 0.00 36.14 3.82
1490 1550 2.665165 AGTGTGAAAATCCACTGGCAA 58.335 42.857 0.00 0.00 40.30 4.52
1493 1553 2.102252 TGTGAAAATCCACTGGCAAACC 59.898 45.455 0.00 0.00 37.89 3.27
1494 1554 1.339610 TGAAAATCCACTGGCAAACCG 59.660 47.619 0.00 0.00 39.70 4.44
1533 1594 4.603131 TGATGAATAGCTGGCCTCTTTTT 58.397 39.130 3.32 0.00 0.00 1.94
1542 1603 2.751806 CTGGCCTCTTTTTCTCCATCAC 59.248 50.000 3.32 0.00 0.00 3.06
1570 1631 1.266989 CGTGCCTCAAGGAAAAAGACC 59.733 52.381 0.00 0.00 37.39 3.85
1572 1633 1.257743 GCCTCAAGGAAAAAGACCCC 58.742 55.000 0.00 0.00 37.39 4.95
1573 1634 1.480498 GCCTCAAGGAAAAAGACCCCA 60.480 52.381 0.00 0.00 37.39 4.96
1586 1647 1.131638 GACCCCATCAGTGCCAGATA 58.868 55.000 0.00 0.00 0.00 1.98
1599 1660 5.356190 CAGTGCCAGATATTTCACATGAAGT 59.644 40.000 0.00 0.00 35.21 3.01
1642 1707 1.810755 CTTCTTAGGCCCGTTTGGAAC 59.189 52.381 0.00 0.00 37.49 3.62
1669 1734 5.102313 GGAATTTTGCAGGAATTTCGTAGG 58.898 41.667 10.34 0.00 0.00 3.18
1795 1866 8.908786 TTAGGATTCTAAATACTTGCTCCATG 57.091 34.615 0.00 0.00 32.96 3.66
1851 1922 7.821846 ACATGTGTCTTTATCTCTCCTTTTCTC 59.178 37.037 0.00 0.00 0.00 2.87
1888 1959 5.294734 ACAATTCCTGCAAAATTCCTGTT 57.705 34.783 4.22 0.00 0.00 3.16
1902 1973 2.507484 TCCTGTTGAGCATCCAAACAG 58.493 47.619 7.61 7.61 0.00 3.16
1985 2056 0.955919 CCTGCACTTTTCCTCGTCCC 60.956 60.000 0.00 0.00 0.00 4.46
1993 2064 4.154195 CACTTTTCCTCGTCCCATGTTTAG 59.846 45.833 0.00 0.00 0.00 1.85
2006 2077 4.202781 CCCATGTTTAGGGGGCCTTATTAT 60.203 45.833 0.84 0.00 44.32 1.28
2031 2102 1.074566 GCATGGGATCTTAGGAAGGGG 59.925 57.143 0.00 0.00 0.00 4.79
2055 2126 0.240411 CCAGCAAAGCAGAAGCACTC 59.760 55.000 0.00 0.00 45.49 3.51
2059 2130 1.602311 CAAAGCAGAAGCACTCCACT 58.398 50.000 0.00 0.00 45.49 4.00
2092 2163 5.726963 GCGAGGAAGAAAATTAGTTTAGGCG 60.727 44.000 0.00 0.00 0.00 5.52
2115 2186 3.001414 GAGGGTCGAGAAAGGTTAAAGC 58.999 50.000 0.00 0.00 0.00 3.51
2123 2194 6.019720 GTCGAGAAAGGTTAAAGCTATACTGC 60.020 42.308 0.00 0.00 0.00 4.40
2124 2195 5.810587 CGAGAAAGGTTAAAGCTATACTGCA 59.189 40.000 0.00 0.00 34.99 4.41
2180 2251 6.624021 ACAGGGAATTAATCTACCTAACCCAT 59.376 38.462 0.00 0.00 37.49 4.00
2201 2272 3.925379 TGTCTGCACGTAATCAATCTGT 58.075 40.909 0.00 0.00 0.00 3.41
2202 2273 4.314961 TGTCTGCACGTAATCAATCTGTT 58.685 39.130 0.00 0.00 0.00 3.16
2203 2274 4.152223 TGTCTGCACGTAATCAATCTGTTG 59.848 41.667 0.00 0.00 36.65 3.33
2204 2275 3.684305 TCTGCACGTAATCAATCTGTTGG 59.316 43.478 0.00 0.00 35.99 3.77
2205 2276 2.161410 TGCACGTAATCAATCTGTTGGC 59.839 45.455 0.00 0.00 35.99 4.52
2206 2277 2.420022 GCACGTAATCAATCTGTTGGCT 59.580 45.455 0.00 0.00 35.99 4.75
2207 2278 3.119849 GCACGTAATCAATCTGTTGGCTT 60.120 43.478 0.00 0.00 35.99 4.35
2208 2279 4.094294 GCACGTAATCAATCTGTTGGCTTA 59.906 41.667 0.00 0.00 35.99 3.09
2209 2280 5.727791 GCACGTAATCAATCTGTTGGCTTAG 60.728 44.000 0.00 0.00 35.99 2.18
2210 2281 5.351465 CACGTAATCAATCTGTTGGCTTAGT 59.649 40.000 0.00 0.00 35.99 2.24
2211 2282 5.351465 ACGTAATCAATCTGTTGGCTTAGTG 59.649 40.000 0.00 0.00 35.99 2.74
2212 2283 5.351465 CGTAATCAATCTGTTGGCTTAGTGT 59.649 40.000 0.00 0.00 35.99 3.55
2213 2284 6.533723 CGTAATCAATCTGTTGGCTTAGTGTA 59.466 38.462 0.00 0.00 35.99 2.90
2214 2285 7.064134 CGTAATCAATCTGTTGGCTTAGTGTAA 59.936 37.037 0.00 0.00 35.99 2.41
2215 2286 6.743575 ATCAATCTGTTGGCTTAGTGTAAC 57.256 37.500 0.00 0.00 35.99 2.50
2216 2287 5.865085 TCAATCTGTTGGCTTAGTGTAACT 58.135 37.500 0.00 0.00 42.66 2.24
2217 2288 6.296026 TCAATCTGTTGGCTTAGTGTAACTT 58.704 36.000 0.00 0.00 41.22 2.66
2218 2289 6.204688 TCAATCTGTTGGCTTAGTGTAACTTG 59.795 38.462 0.00 0.00 41.22 3.16
2219 2290 9.117449 TCAATCTGTTGGCTTAGTGTAACTTGC 62.117 40.741 0.00 0.00 41.22 4.01
2227 2298 3.633361 GTGTAACTTGCTGGAGGCT 57.367 52.632 0.00 0.00 42.39 4.58
2228 2299 1.160137 GTGTAACTTGCTGGAGGCTG 58.840 55.000 0.00 0.00 42.39 4.85
2229 2300 1.055849 TGTAACTTGCTGGAGGCTGA 58.944 50.000 0.00 0.00 42.39 4.26
2230 2301 1.630369 TGTAACTTGCTGGAGGCTGAT 59.370 47.619 0.00 0.00 42.39 2.90
2231 2302 2.284190 GTAACTTGCTGGAGGCTGATC 58.716 52.381 0.00 0.00 42.39 2.92
2232 2303 0.694771 AACTTGCTGGAGGCTGATCA 59.305 50.000 0.00 0.00 42.39 2.92
2233 2304 0.694771 ACTTGCTGGAGGCTGATCAA 59.305 50.000 0.00 0.00 42.39 2.57
2234 2305 1.284198 ACTTGCTGGAGGCTGATCAAT 59.716 47.619 0.00 0.00 42.39 2.57
2235 2306 1.948145 CTTGCTGGAGGCTGATCAATC 59.052 52.381 0.00 0.00 42.39 2.67
2236 2307 0.913924 TGCTGGAGGCTGATCAATCA 59.086 50.000 0.00 0.00 42.39 2.57
2237 2308 1.307097 GCTGGAGGCTGATCAATCAC 58.693 55.000 0.00 0.00 38.06 3.06
2238 2309 1.579698 CTGGAGGCTGATCAATCACG 58.420 55.000 0.00 0.00 32.50 4.35
2279 2358 1.168714 GCCAACTTCACACTCCATCC 58.831 55.000 0.00 0.00 0.00 3.51
2288 2367 2.091610 TCACACTCCATCCTAGCTAGCT 60.092 50.000 23.12 23.12 0.00 3.32
2289 2368 2.295909 CACACTCCATCCTAGCTAGCTC 59.704 54.545 23.26 0.00 0.00 4.09
2307 2386 1.123038 CTCAAATTCTTTTGCGCGCAC 59.877 47.619 36.72 4.65 41.66 5.34
2319 2398 2.099062 GCGCACGAATCTTGCTGG 59.901 61.111 9.98 0.00 37.87 4.85
2325 2404 2.753966 CGAATCTTGCTGGCCCACG 61.754 63.158 0.00 0.00 0.00 4.94
2327 2406 3.574074 AATCTTGCTGGCCCACGCT 62.574 57.895 0.00 0.00 34.44 5.07
2339 2418 2.246739 CCACGCTATGCATCCACGG 61.247 63.158 0.19 0.00 0.00 4.94
2340 2419 1.521457 CACGCTATGCATCCACGGT 60.521 57.895 0.19 0.00 0.00 4.83
2350 2429 0.463204 CATCCACGGTGCTCTCTGAT 59.537 55.000 1.68 0.00 0.00 2.90
2355 2434 0.534412 ACGGTGCTCTCTGATTCTGG 59.466 55.000 0.00 0.00 0.00 3.86
2358 2437 1.830477 GGTGCTCTCTGATTCTGGACT 59.170 52.381 0.00 0.00 0.00 3.85
2361 2440 1.748493 GCTCTCTGATTCTGGACTCGT 59.252 52.381 0.00 0.00 0.00 4.18
2373 2452 5.060662 TCTGGACTCGTTACAATCTTCTG 57.939 43.478 0.00 0.00 0.00 3.02
2397 2476 0.811616 AAGTCATTCGCTGGATCGCC 60.812 55.000 0.00 0.00 0.00 5.54
2415 2494 4.513519 CGCGAGGTTAATCTGGCA 57.486 55.556 20.80 0.00 38.19 4.92
2425 2504 6.089551 CGAGGTTAATCTGGCAAACGATATAG 59.910 42.308 0.00 0.00 0.00 1.31
2437 2536 7.041167 TGGCAAACGATATAGTAGTACATACGT 60.041 37.037 2.52 0.00 39.55 3.57
2457 2556 3.728268 CGTACCTTCTCTAGTTCAGTGCG 60.728 52.174 0.00 0.00 0.00 5.34
2459 2558 2.628657 ACCTTCTCTAGTTCAGTGCGTT 59.371 45.455 0.00 0.00 0.00 4.84
2463 2564 4.421033 TCTCTAGTTCAGTGCGTTGTAG 57.579 45.455 0.00 0.00 0.00 2.74
2472 2573 1.965643 AGTGCGTTGTAGAGGTTGGTA 59.034 47.619 0.00 0.00 0.00 3.25
2473 2574 2.029290 AGTGCGTTGTAGAGGTTGGTAG 60.029 50.000 0.00 0.00 0.00 3.18
2474 2575 1.337447 TGCGTTGTAGAGGTTGGTAGC 60.337 52.381 0.00 0.00 0.00 3.58
2475 2576 2.005560 GCGTTGTAGAGGTTGGTAGCC 61.006 57.143 0.00 0.00 0.00 3.93
2476 2577 1.274167 CGTTGTAGAGGTTGGTAGCCA 59.726 52.381 0.00 0.00 0.00 4.75
2493 2594 1.610624 GCCAACCTCGAACTTGATCCA 60.611 52.381 3.76 0.00 0.00 3.41
2495 2596 3.347216 CCAACCTCGAACTTGATCCATT 58.653 45.455 3.76 0.00 0.00 3.16
2496 2597 3.375299 CCAACCTCGAACTTGATCCATTC 59.625 47.826 3.76 0.00 0.00 2.67
2514 2615 5.071653 TCCATTCGGATTAGTTGATGGATCA 59.928 40.000 2.04 0.00 35.91 2.92
2518 2619 3.492656 CGGATTAGTTGATGGATCACCGT 60.493 47.826 0.00 0.00 35.52 4.83
2576 2710 2.430610 GGCCTCATGAGCTCCGAGT 61.431 63.158 17.76 1.74 0.00 4.18
2584 2718 1.174783 TGAGCTCCGAGTTGTACCTC 58.825 55.000 12.15 0.00 0.00 3.85
2591 2725 2.048503 AGTTGTACCTCGCCGTGC 60.049 61.111 0.00 0.00 0.00 5.34
2643 2780 3.207474 GCTTCTGCAACAATACAGTGG 57.793 47.619 0.00 0.00 39.41 4.00
2648 2785 1.506262 CAACAATACAGTGGCGCCC 59.494 57.895 26.77 15.80 0.00 6.13
2649 2786 1.074072 AACAATACAGTGGCGCCCA 59.926 52.632 26.77 9.53 0.00 5.36
2650 2787 0.323360 AACAATACAGTGGCGCCCAT 60.323 50.000 26.77 9.79 35.28 4.00
2653 2790 2.556840 AATACAGTGGCGCCCATGCT 62.557 55.000 26.77 13.99 35.28 3.79
2660 2797 4.266070 GCGCCCATGCTGCTGATG 62.266 66.667 0.00 0.00 35.24 3.07
2662 2799 2.116533 CGCCCATGCTGCTGATGAA 61.117 57.895 0.00 0.00 34.43 2.57
2663 2800 1.659622 CGCCCATGCTGCTGATGAAA 61.660 55.000 0.00 0.00 34.43 2.69
2681 2818 3.133901 TGAAATCTCTGGTAATGCCGCTA 59.866 43.478 0.00 0.00 41.21 4.26
2687 2824 0.906066 TGGTAATGCCGCTAGTTCCA 59.094 50.000 0.00 0.00 41.21 3.53
2723 2928 8.816640 TGAGAGTTTTCTGAATTAATTTTGGC 57.183 30.769 1.43 0.00 32.53 4.52
2728 2933 6.432403 TTTCTGAATTAATTTTGGCACCCT 57.568 33.333 1.43 0.00 0.00 4.34
2894 5827 1.059913 AGCTCTACACCAGCTTTGGT 58.940 50.000 0.00 0.00 45.34 3.67
3143 6076 1.625818 CTGGCCTCTGAGGTTAACACT 59.374 52.381 23.92 2.06 37.80 3.55
3155 6088 1.946768 GTTAACACTGCTGGCTTGTCA 59.053 47.619 0.00 0.00 0.00 3.58
3311 6249 0.524862 TAGCGACGTGTTCCTCCTTC 59.475 55.000 0.00 0.00 0.00 3.46
3337 6277 7.222224 CGTGTTTGTAGTAGACTCTGAAAGTTT 59.778 37.037 0.00 0.00 38.74 2.66
3338 6278 9.525409 GTGTTTGTAGTAGACTCTGAAAGTTTA 57.475 33.333 0.00 0.00 38.74 2.01
3426 6376 3.041946 AGCCTACTACTGGATTGGAAGG 58.958 50.000 0.00 0.00 0.00 3.46
4177 7142 1.205893 GAGAAGATGTCCGACAGCCTT 59.794 52.381 13.10 14.24 34.53 4.35
4183 7148 3.936203 TCCGACAGCCTTGCGGTT 61.936 61.111 0.00 0.00 41.56 4.44
4381 7346 1.153549 GCTCGCCGTGATCCTTCTT 60.154 57.895 0.00 0.00 0.00 2.52
4696 7661 2.417516 CAGTATCCAGTCGCCCGG 59.582 66.667 0.00 0.00 0.00 5.73
4836 7801 4.400961 GCCTGCGCCTTCCTCTGT 62.401 66.667 4.18 0.00 0.00 3.41
4837 7802 2.125350 CCTGCGCCTTCCTCTGTC 60.125 66.667 4.18 0.00 0.00 3.51
4844 7809 1.334384 GCCTTCCTCTGTCCTCCTCC 61.334 65.000 0.00 0.00 0.00 4.30
4850 7815 0.469144 CTCTGTCCTCCTCCCCTAGC 60.469 65.000 0.00 0.00 0.00 3.42
4851 7816 0.926720 TCTGTCCTCCTCCCCTAGCT 60.927 60.000 0.00 0.00 0.00 3.32
4852 7817 0.469144 CTGTCCTCCTCCCCTAGCTC 60.469 65.000 0.00 0.00 0.00 4.09
4853 7818 1.529713 GTCCTCCTCCCCTAGCTCG 60.530 68.421 0.00 0.00 0.00 5.03
4883 7851 9.941664 CAGCATCCAAATTAGAAAAGTATACTG 57.058 33.333 6.06 0.00 0.00 2.74
4895 7863 4.408182 AAGTATACTGCTGGGTGCTAAG 57.592 45.455 6.06 0.00 43.37 2.18
4896 7864 3.375699 AGTATACTGCTGGGTGCTAAGT 58.624 45.455 4.10 0.00 43.37 2.24
4911 7879 5.335426 GGTGCTAAGTTAAAACCAGGTTAGC 60.335 44.000 4.87 9.57 38.44 3.09
5034 15765 1.278127 GAGGTTACAGCCTTACCAGCA 59.722 52.381 0.00 0.00 39.34 4.41
5075 15806 1.098050 CAAGGGAGTTGTATGGCTGC 58.902 55.000 0.00 0.00 0.00 5.25
5082 15813 4.136796 GGAGTTGTATGGCTGCAATGATA 58.863 43.478 0.50 0.00 29.41 2.15
5099 15830 1.774085 GATACGTGACGCGATCAGAAC 59.226 52.381 15.93 0.06 44.77 3.01
5185 15916 0.605319 TCCATGCACCACTCCGTTTC 60.605 55.000 0.00 0.00 0.00 2.78
5191 15922 1.673920 GCACCACTCCGTTTCAAGAAA 59.326 47.619 0.00 0.00 0.00 2.52
5205 15936 8.893727 CCGTTTCAAGAAAGATAAGGATATGTT 58.106 33.333 0.00 0.00 0.00 2.71
5270 16001 6.369059 ACAGCTATGCATACAATGTTCTTC 57.631 37.500 1.16 0.00 0.00 2.87
5326 16057 2.542411 GGCTGCTCTGTTGTTCAACAAG 60.542 50.000 17.14 16.47 39.00 3.16
5349 16080 4.046286 TGGTGGATTATGGCTTTGTTCT 57.954 40.909 0.00 0.00 0.00 3.01
5405 16136 3.598019 TGCCCGTATTTTCGTTACTCT 57.402 42.857 0.00 0.00 0.00 3.24
5412 16143 2.178912 TTTTCGTTACTCTGCAGGGG 57.821 50.000 20.01 12.05 0.00 4.79
5414 16145 0.606604 TTCGTTACTCTGCAGGGGTC 59.393 55.000 20.01 6.70 0.00 4.46
5416 16147 0.173708 CGTTACTCTGCAGGGGTCTC 59.826 60.000 20.01 10.61 0.00 3.36
5417 16148 1.267121 GTTACTCTGCAGGGGTCTCA 58.733 55.000 20.01 0.00 0.00 3.27
5421 16152 0.979665 CTCTGCAGGGGTCTCAGAAA 59.020 55.000 15.13 0.00 36.54 2.52
5466 16197 1.357420 TGGAATGGCAAGCCCTAGAAA 59.643 47.619 8.89 0.00 34.56 2.52
5548 16279 9.507329 AAGTTTCTAGATCAAATGCTAGACAAA 57.493 29.630 0.00 0.00 41.89 2.83
5549 16280 9.507329 AGTTTCTAGATCAAATGCTAGACAAAA 57.493 29.630 0.00 0.00 41.89 2.44
5593 16324 1.781025 ATCGTGTGTTGGTTGCACCG 61.781 55.000 0.00 0.00 42.58 4.94
5594 16325 2.278531 GTGTGTTGGTTGCACCGC 60.279 61.111 0.00 0.00 42.58 5.68
5610 16341 2.828145 GCTGATGGAGAGGAGGCC 59.172 66.667 0.00 0.00 0.00 5.19
5619 16350 1.111277 GAGAGGAGGCCAGAGAAGTC 58.889 60.000 5.01 0.00 0.00 3.01
5640 16371 0.681175 ACAATGCCTTCCAAACAGCC 59.319 50.000 0.00 0.00 0.00 4.85
5641 16372 0.680618 CAATGCCTTCCAAACAGCCA 59.319 50.000 0.00 0.00 0.00 4.75
5652 16383 2.559668 CCAAACAGCCAATGATGACACT 59.440 45.455 0.00 0.00 0.00 3.55
5653 16384 3.571571 CAAACAGCCAATGATGACACTG 58.428 45.455 0.00 0.00 0.00 3.66
5654 16385 2.574006 ACAGCCAATGATGACACTGT 57.426 45.000 0.00 0.00 33.20 3.55
5655 16386 2.156917 ACAGCCAATGATGACACTGTG 58.843 47.619 6.19 6.19 35.26 3.66
5656 16387 2.224597 ACAGCCAATGATGACACTGTGA 60.225 45.455 15.86 0.00 35.26 3.58
5657 16388 2.418976 CAGCCAATGATGACACTGTGAG 59.581 50.000 15.86 0.00 0.00 3.51
5658 16389 2.039480 AGCCAATGATGACACTGTGAGT 59.961 45.455 15.86 0.00 0.00 3.41
5659 16390 3.261643 AGCCAATGATGACACTGTGAGTA 59.738 43.478 15.86 0.33 0.00 2.59
5660 16391 4.002982 GCCAATGATGACACTGTGAGTAA 58.997 43.478 15.86 0.00 0.00 2.24
5661 16392 4.142816 GCCAATGATGACACTGTGAGTAAC 60.143 45.833 15.86 2.76 0.00 2.50
5662 16393 4.996758 CCAATGATGACACTGTGAGTAACA 59.003 41.667 15.86 8.11 37.22 2.41
5663 16394 5.645067 CCAATGATGACACTGTGAGTAACAT 59.355 40.000 15.86 10.86 38.39 2.71
5664 16395 6.149973 CCAATGATGACACTGTGAGTAACATT 59.850 38.462 15.86 14.49 38.39 2.71
5665 16396 7.334171 CCAATGATGACACTGTGAGTAACATTA 59.666 37.037 15.86 8.62 38.39 1.90
5666 16397 8.886719 CAATGATGACACTGTGAGTAACATTAT 58.113 33.333 15.86 10.21 38.39 1.28
5667 16398 7.832503 TGATGACACTGTGAGTAACATTATG 57.167 36.000 15.86 0.00 38.39 1.90
5668 16399 6.313658 TGATGACACTGTGAGTAACATTATGC 59.686 38.462 15.86 2.00 38.39 3.14
5669 16400 5.793817 TGACACTGTGAGTAACATTATGCT 58.206 37.500 15.86 0.00 38.39 3.79
5670 16401 5.639082 TGACACTGTGAGTAACATTATGCTG 59.361 40.000 15.86 0.00 38.39 4.41
5671 16402 4.937620 ACACTGTGAGTAACATTATGCTGG 59.062 41.667 15.86 0.00 38.39 4.85
5672 16403 5.178061 CACTGTGAGTAACATTATGCTGGA 58.822 41.667 0.32 0.00 38.39 3.86
5673 16404 5.292834 CACTGTGAGTAACATTATGCTGGAG 59.707 44.000 0.32 0.00 38.39 3.86
5674 16405 4.769688 TGTGAGTAACATTATGCTGGAGG 58.230 43.478 0.00 0.00 32.36 4.30
5675 16406 4.130118 GTGAGTAACATTATGCTGGAGGG 58.870 47.826 0.00 0.00 0.00 4.30
5676 16407 3.136443 TGAGTAACATTATGCTGGAGGGG 59.864 47.826 0.00 0.00 0.00 4.79
5677 16408 2.158608 AGTAACATTATGCTGGAGGGGC 60.159 50.000 0.00 0.00 0.00 5.80
5678 16409 0.929244 AACATTATGCTGGAGGGGCT 59.071 50.000 0.00 0.00 0.00 5.19
5679 16410 1.819753 ACATTATGCTGGAGGGGCTA 58.180 50.000 0.00 0.00 0.00 3.93
5680 16411 1.701847 ACATTATGCTGGAGGGGCTAG 59.298 52.381 0.00 0.00 0.00 3.42
5681 16412 1.980765 CATTATGCTGGAGGGGCTAGA 59.019 52.381 0.00 0.00 0.00 2.43
5682 16413 2.190398 TTATGCTGGAGGGGCTAGAA 57.810 50.000 0.00 0.00 0.00 2.10
5683 16414 1.424638 TATGCTGGAGGGGCTAGAAC 58.575 55.000 0.00 0.00 0.00 3.01
5684 16415 1.690219 ATGCTGGAGGGGCTAGAACG 61.690 60.000 0.00 0.00 0.00 3.95
5685 16416 2.058595 GCTGGAGGGGCTAGAACGA 61.059 63.158 0.00 0.00 0.00 3.85
5686 16417 2.022240 GCTGGAGGGGCTAGAACGAG 62.022 65.000 0.00 0.00 0.00 4.18
5687 16418 0.684805 CTGGAGGGGCTAGAACGAGT 60.685 60.000 0.00 0.00 0.00 4.18
5688 16419 0.683504 TGGAGGGGCTAGAACGAGTC 60.684 60.000 0.00 0.00 0.00 3.36
5689 16420 0.396001 GGAGGGGCTAGAACGAGTCT 60.396 60.000 0.00 0.00 40.71 3.24
5690 16421 1.476477 GAGGGGCTAGAACGAGTCTT 58.524 55.000 0.00 0.00 37.84 3.01
5691 16422 1.406180 GAGGGGCTAGAACGAGTCTTC 59.594 57.143 0.00 0.00 37.84 2.87
5692 16423 0.460722 GGGGCTAGAACGAGTCTTCC 59.539 60.000 0.00 0.00 37.84 3.46
5693 16424 1.183549 GGGCTAGAACGAGTCTTCCA 58.816 55.000 0.00 0.00 37.84 3.53
5694 16425 1.549170 GGGCTAGAACGAGTCTTCCAA 59.451 52.381 0.00 0.00 37.84 3.53
5695 16426 2.028385 GGGCTAGAACGAGTCTTCCAAA 60.028 50.000 0.00 0.00 37.84 3.28
5696 16427 2.994578 GGCTAGAACGAGTCTTCCAAAC 59.005 50.000 0.00 0.00 37.84 2.93
5697 16428 3.554337 GGCTAGAACGAGTCTTCCAAACA 60.554 47.826 0.00 0.00 37.84 2.83
5698 16429 4.056050 GCTAGAACGAGTCTTCCAAACAA 58.944 43.478 0.00 0.00 37.84 2.83
5699 16430 4.084485 GCTAGAACGAGTCTTCCAAACAAC 60.084 45.833 0.00 0.00 37.84 3.32
5700 16431 2.864343 AGAACGAGTCTTCCAAACAACG 59.136 45.455 0.00 0.00 29.66 4.10
5701 16432 0.935196 ACGAGTCTTCCAAACAACGC 59.065 50.000 0.00 0.00 0.00 4.84
5702 16433 0.111266 CGAGTCTTCCAAACAACGCG 60.111 55.000 3.53 3.53 0.00 6.01
5703 16434 0.234884 GAGTCTTCCAAACAACGCGG 59.765 55.000 12.47 0.00 0.00 6.46
5704 16435 1.370051 GTCTTCCAAACAACGCGGC 60.370 57.895 12.47 0.00 0.00 6.53
5705 16436 2.426752 CTTCCAAACAACGCGGCG 60.427 61.111 22.36 22.36 0.00 6.46
5706 16437 2.887889 CTTCCAAACAACGCGGCGA 61.888 57.895 30.94 0.00 0.00 5.54
5707 16438 3.170810 TTCCAAACAACGCGGCGAC 62.171 57.895 30.94 0.11 0.00 5.19
5708 16439 3.943034 CCAAACAACGCGGCGACA 61.943 61.111 30.94 0.00 0.00 4.35
5709 16440 2.023461 CAAACAACGCGGCGACAA 59.977 55.556 30.94 0.00 0.00 3.18
5718 16449 2.780643 CGGCGACAATGTGAGCAG 59.219 61.111 0.00 4.85 0.00 4.24
5750 16594 1.705186 AGGGGCTAGAATGTTGTGTGT 59.295 47.619 0.00 0.00 0.00 3.72
5760 16604 6.844696 AGAATGTTGTGTGTAGTGTTACAG 57.155 37.500 0.00 0.00 40.33 2.74
5769 16613 4.338964 TGTGTAGTGTTACAGGAAGACGAA 59.661 41.667 0.00 0.00 40.33 3.85
5772 16616 3.834610 AGTGTTACAGGAAGACGAATCG 58.165 45.455 0.00 0.00 36.44 3.34
5784 16628 2.925578 ACGAATCGTCCGTATTGTCA 57.074 45.000 0.96 0.00 38.61 3.58
5798 16642 3.770263 ATTGTCATTGCGATGTCAAGG 57.230 42.857 24.44 0.00 41.96 3.61
5813 16657 1.176527 CAAGGGATGGTTGATGCGTT 58.823 50.000 0.00 0.00 31.32 4.84
5815 16659 1.463674 AGGGATGGTTGATGCGTTTC 58.536 50.000 0.00 0.00 0.00 2.78
5816 16660 1.004745 AGGGATGGTTGATGCGTTTCT 59.995 47.619 0.00 0.00 0.00 2.52
5818 16662 2.231235 GGGATGGTTGATGCGTTTCTTT 59.769 45.455 0.00 0.00 0.00 2.52
5819 16663 3.442273 GGGATGGTTGATGCGTTTCTTTA 59.558 43.478 0.00 0.00 0.00 1.85
5823 16667 6.912591 GGATGGTTGATGCGTTTCTTTATTAG 59.087 38.462 0.00 0.00 0.00 1.73
5824 16668 6.811253 TGGTTGATGCGTTTCTTTATTAGT 57.189 33.333 0.00 0.00 0.00 2.24
5825 16669 7.908827 TGGTTGATGCGTTTCTTTATTAGTA 57.091 32.000 0.00 0.00 0.00 1.82
5826 16670 8.325421 TGGTTGATGCGTTTCTTTATTAGTAA 57.675 30.769 0.00 0.00 0.00 2.24
5848 16692 8.768397 AGTAATATGTAAGGAATTGGAGTGTCA 58.232 33.333 0.00 0.00 0.00 3.58
5849 16693 9.561069 GTAATATGTAAGGAATTGGAGTGTCAT 57.439 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 0.400594 AGTCCTGTGCAACCCTAACC 59.599 55.000 0.00 0.00 34.36 2.85
81 82 2.113986 AGGGCAGTCCTGTGCAAC 59.886 61.111 0.00 0.00 46.07 4.17
130 131 7.009999 CGAGAAAGATTCTGAATTCAGTACCAG 59.990 40.741 29.80 9.27 44.12 4.00
279 281 5.410746 GTCACATATCATTCCAGCCATACAG 59.589 44.000 0.00 0.00 0.00 2.74
413 422 0.725686 CATCTGTGCAAGGAGAAGCG 59.274 55.000 0.00 0.00 0.00 4.68
548 557 3.199946 TGTCTCTTGGTCAGGAACAAAGT 59.800 43.478 0.96 0.00 39.59 2.66
802 812 3.141838 TCTCTAGCCTCCTCTCCATCAAT 59.858 47.826 0.00 0.00 0.00 2.57
813 823 0.905357 TGCCAACTTCTCTAGCCTCC 59.095 55.000 0.00 0.00 0.00 4.30
817 827 3.615155 AGGAATTGCCAACTTCTCTAGC 58.385 45.455 0.00 0.00 40.02 3.42
830 840 1.135575 CAGCTGTTCGGAAGGAATTGC 60.136 52.381 5.25 0.00 36.92 3.56
842 852 3.332919 ACAGTGTCATCATCAGCTGTTC 58.667 45.455 14.67 0.00 34.02 3.18
870 880 5.878406 ATTCTAGACCCTCCAACAGTATG 57.122 43.478 0.00 0.00 46.00 2.39
900 911 8.956426 TGATATGGAGAAATAGTGTTTTGTTCC 58.044 33.333 5.24 5.24 0.00 3.62
925 936 4.049186 GGCCTGTAATACGTAGTCACATG 58.951 47.826 0.00 2.32 43.93 3.21
926 937 3.702548 TGGCCTGTAATACGTAGTCACAT 59.297 43.478 3.32 0.00 43.93 3.21
932 943 2.296471 CTCCCTGGCCTGTAATACGTAG 59.704 54.545 3.32 0.00 0.00 3.51
933 944 2.091720 TCTCCCTGGCCTGTAATACGTA 60.092 50.000 3.32 0.00 0.00 3.57
934 945 1.120530 CTCCCTGGCCTGTAATACGT 58.879 55.000 3.32 0.00 0.00 3.57
935 946 1.341531 CTCTCCCTGGCCTGTAATACG 59.658 57.143 3.32 0.00 0.00 3.06
963 974 4.749245 ATTCGTAACTGCCTGAAAACTG 57.251 40.909 0.00 0.00 0.00 3.16
1026 1037 0.750249 TCAACAGCCTTCGTGTCAGA 59.250 50.000 0.00 0.00 0.00 3.27
1031 1042 3.751175 TCCTAATTTCAACAGCCTTCGTG 59.249 43.478 0.00 0.00 0.00 4.35
1033 1044 5.567138 ATTCCTAATTTCAACAGCCTTCG 57.433 39.130 0.00 0.00 0.00 3.79
1039 1050 7.013083 AGCTGCAGATATTCCTAATTTCAACAG 59.987 37.037 20.43 0.00 32.51 3.16
1048 1059 2.548707 CGCCAGCTGCAGATATTCCTAA 60.549 50.000 20.43 0.00 41.33 2.69
1069 1080 5.971763 AGAACATTAGTCACTCACCATCTC 58.028 41.667 0.00 0.00 0.00 2.75
1108 1119 7.846644 ACAACATCAACAAATGTGTGAAAAT 57.153 28.000 0.00 0.00 39.76 1.82
1121 1132 5.243954 AGAGCACTAGACTACAACATCAACA 59.756 40.000 0.00 0.00 0.00 3.33
1184 1195 9.880157 AGTATCTTACGCAAGGAAATTTAGTAA 57.120 29.630 0.00 0.00 41.71 2.24
1201 1250 9.329913 CAAAACAGTACATTTGCAGTATCTTAC 57.670 33.333 0.00 0.00 30.62 2.34
1217 1266 8.504005 ACATAGTATTGTTGAGCAAAACAGTAC 58.496 33.333 20.24 20.24 45.96 2.73
1220 1269 6.803320 CCACATAGTATTGTTGAGCAAAACAG 59.197 38.462 4.65 0.00 40.93 3.16
1230 1282 6.017109 GGGCTTATGTCCACATAGTATTGTTG 60.017 42.308 0.00 0.00 39.69 3.33
1242 1294 2.027192 TCTTCACAGGGCTTATGTCCAC 60.027 50.000 1.64 0.00 41.31 4.02
1245 1297 4.207891 TCTTCTTCACAGGGCTTATGTC 57.792 45.455 0.00 0.00 0.00 3.06
1246 1298 4.851639 ATCTTCTTCACAGGGCTTATGT 57.148 40.909 0.00 0.00 0.00 2.29
1247 1299 7.172875 CAGAATATCTTCTTCACAGGGCTTATG 59.827 40.741 0.00 0.00 39.78 1.90
1249 1301 6.384015 TCAGAATATCTTCTTCACAGGGCTTA 59.616 38.462 0.00 0.00 39.78 3.09
1251 1303 4.718774 TCAGAATATCTTCTTCACAGGGCT 59.281 41.667 0.00 0.00 39.78 5.19
1252 1304 5.028549 TCAGAATATCTTCTTCACAGGGC 57.971 43.478 0.00 0.00 39.78 5.19
1253 1305 6.485984 CCAATCAGAATATCTTCTTCACAGGG 59.514 42.308 0.00 0.00 39.78 4.45
1254 1306 6.485984 CCCAATCAGAATATCTTCTTCACAGG 59.514 42.308 0.00 0.00 39.78 4.00
1255 1307 7.278135 TCCCAATCAGAATATCTTCTTCACAG 58.722 38.462 0.00 0.00 39.78 3.66
1256 1308 7.199167 TCCCAATCAGAATATCTTCTTCACA 57.801 36.000 0.00 0.00 39.78 3.58
1257 1309 7.174599 CCATCCCAATCAGAATATCTTCTTCAC 59.825 40.741 0.00 0.00 39.78 3.18
1258 1310 7.147248 ACCATCCCAATCAGAATATCTTCTTCA 60.147 37.037 0.00 0.00 39.78 3.02
1319 1374 2.906897 CGCCATGGCACCATACCC 60.907 66.667 34.93 3.77 42.06 3.69
1358 1415 0.040646 TCCACCACCATACCGTCTCT 59.959 55.000 0.00 0.00 0.00 3.10
1359 1416 0.899720 TTCCACCACCATACCGTCTC 59.100 55.000 0.00 0.00 0.00 3.36
1368 1425 1.559682 GCTATCTTCCTTCCACCACCA 59.440 52.381 0.00 0.00 0.00 4.17
1395 1452 6.024552 TCAAGCACTGTTCAAAACTTCTTT 57.975 33.333 0.00 0.00 0.00 2.52
1414 1474 0.094216 CACTGCGCTCGTTCATCAAG 59.906 55.000 9.73 0.00 0.00 3.02
1416 1476 1.006220 ACACTGCGCTCGTTCATCA 60.006 52.632 9.73 0.00 0.00 3.07
1420 1480 0.512952 ATTTCACACTGCGCTCGTTC 59.487 50.000 9.73 0.00 0.00 3.95
1455 1515 3.527533 TCACACTGTATTTCCGTATGGC 58.472 45.455 0.00 0.00 34.14 4.40
1456 1516 6.489127 TTTTCACACTGTATTTCCGTATGG 57.511 37.500 0.00 0.00 0.00 2.74
1457 1517 7.148323 TGGATTTTCACACTGTATTTCCGTATG 60.148 37.037 0.00 0.00 0.00 2.39
1474 1534 1.339610 CGGTTTGCCAGTGGATTTTCA 59.660 47.619 15.20 0.00 34.09 2.69
1475 1535 1.611491 TCGGTTTGCCAGTGGATTTTC 59.389 47.619 15.20 0.00 34.09 2.29
1493 1553 2.592194 TCAGTCGTCCGAAATTTCTCG 58.408 47.619 15.92 15.83 38.58 4.04
1494 1554 4.174009 TCATCAGTCGTCCGAAATTTCTC 58.826 43.478 15.92 5.87 0.00 2.87
1506 1566 1.202580 GGCCAGCTATTCATCAGTCGT 60.203 52.381 0.00 0.00 0.00 4.34
1533 1594 2.891936 GCGCATGCGTGATGGAGA 60.892 61.111 37.54 0.00 42.09 3.71
1553 1614 1.257743 GGGGTCTTTTTCCTTGAGGC 58.742 55.000 0.00 0.00 34.44 4.70
1570 1631 3.567164 GTGAAATATCTGGCACTGATGGG 59.433 47.826 0.00 0.00 46.36 4.00
1572 1633 5.529800 TCATGTGAAATATCTGGCACTGATG 59.470 40.000 0.00 0.00 46.36 3.07
1573 1634 6.262496 CTTCATGTGAAATATCTGGCACTGAT 59.738 38.462 0.00 0.00 40.69 2.90
1609 1673 1.342819 CTAAGAAGCGAGATGGGAGGG 59.657 57.143 0.00 0.00 0.00 4.30
1610 1674 1.342819 CCTAAGAAGCGAGATGGGAGG 59.657 57.143 0.00 0.00 0.00 4.30
1642 1707 4.324402 CGAAATTCCTGCAAAATTCCTTCG 59.676 41.667 7.07 8.81 0.00 3.79
1694 1759 5.368523 TCCTACAATCCAAAGGGTACATAGG 59.631 44.000 0.00 0.00 33.19 2.57
1701 1766 4.478686 AGCTAATCCTACAATCCAAAGGGT 59.521 41.667 0.00 0.00 34.93 4.34
1851 1922 7.173907 TGCAGGAATTGTTTCTTTAGAAGAGAG 59.826 37.037 0.00 0.00 39.03 3.20
1872 1943 2.036217 TGCTCAACAGGAATTTTGCAGG 59.964 45.455 0.00 0.00 0.00 4.85
1888 1959 3.354948 ACATAGCTGTTTGGATGCTCA 57.645 42.857 0.00 0.00 38.15 4.26
1911 1982 9.976511 ACATGATTCTAAATTGCAGGAATTATG 57.023 29.630 18.98 18.98 42.50 1.90
1985 2056 4.220602 GCATAATAAGGCCCCCTAAACATG 59.779 45.833 0.00 0.00 31.13 3.21
1993 2064 0.897621 GCATGCATAATAAGGCCCCC 59.102 55.000 14.21 0.00 0.00 5.40
2006 2077 1.776063 TCCTAAGATCCCATGCATGCA 59.224 47.619 25.04 25.04 0.00 3.96
2031 2102 1.601412 GCTTCTGCTTTGCTGGTTGAC 60.601 52.381 0.00 0.00 36.03 3.18
2055 2126 0.242825 TCCTCGCAAACGTAGAGTGG 59.757 55.000 0.00 0.00 41.18 4.00
2059 2130 3.374220 TTTCTTCCTCGCAAACGTAGA 57.626 42.857 0.00 0.00 41.18 2.59
2092 2163 0.529378 TAACCTTTCTCGACCCTCGC 59.471 55.000 0.00 0.00 40.21 5.03
2115 2186 8.347771 ACACAATAATCAAAGCATGCAGTATAG 58.652 33.333 21.98 3.38 0.00 1.31
2123 2194 9.027129 CCAGATTAACACAATAATCAAAGCATG 57.973 33.333 9.09 0.00 42.28 4.06
2124 2195 8.970020 TCCAGATTAACACAATAATCAAAGCAT 58.030 29.630 9.09 0.00 42.28 3.79
2180 2251 3.925379 ACAGATTGATTACGTGCAGACA 58.075 40.909 0.00 0.00 0.00 3.41
2201 2272 3.146066 CCAGCAAGTTACACTAAGCCAA 58.854 45.455 0.00 0.00 32.02 4.52
2202 2273 2.370519 TCCAGCAAGTTACACTAAGCCA 59.629 45.455 0.00 0.00 32.02 4.75
2203 2274 3.003480 CTCCAGCAAGTTACACTAAGCC 58.997 50.000 0.00 0.00 32.02 4.35
2204 2275 3.003480 CCTCCAGCAAGTTACACTAAGC 58.997 50.000 0.00 0.00 31.86 3.09
2205 2276 3.003480 GCCTCCAGCAAGTTACACTAAG 58.997 50.000 0.00 0.00 42.97 2.18
2206 2277 3.053831 GCCTCCAGCAAGTTACACTAA 57.946 47.619 0.00 0.00 42.97 2.24
2207 2278 2.762535 GCCTCCAGCAAGTTACACTA 57.237 50.000 0.00 0.00 42.97 2.74
2208 2279 3.633361 GCCTCCAGCAAGTTACACT 57.367 52.632 0.00 0.00 42.97 3.55
2218 2289 1.307097 GTGATTGATCAGCCTCCAGC 58.693 55.000 0.00 0.00 44.25 4.85
2219 2290 1.134580 ACGTGATTGATCAGCCTCCAG 60.135 52.381 0.00 0.00 37.51 3.86
2220 2291 0.904649 ACGTGATTGATCAGCCTCCA 59.095 50.000 0.00 0.00 37.51 3.86
2221 2292 1.293924 CACGTGATTGATCAGCCTCC 58.706 55.000 10.90 0.00 37.51 4.30
2222 2293 1.134699 TCCACGTGATTGATCAGCCTC 60.135 52.381 19.30 0.00 37.51 4.70
2223 2294 0.904649 TCCACGTGATTGATCAGCCT 59.095 50.000 19.30 0.00 37.51 4.58
2224 2295 1.869767 GATCCACGTGATTGATCAGCC 59.130 52.381 19.30 0.00 37.51 4.85
2225 2296 2.554142 TGATCCACGTGATTGATCAGC 58.446 47.619 23.63 7.39 39.81 4.26
2226 2297 4.392754 TGTTTGATCCACGTGATTGATCAG 59.607 41.667 25.03 6.89 43.98 2.90
2227 2298 4.322567 TGTTTGATCCACGTGATTGATCA 58.677 39.130 23.63 23.63 42.20 2.92
2228 2299 4.944962 TGTTTGATCCACGTGATTGATC 57.055 40.909 19.30 19.81 36.33 2.92
2229 2300 5.902613 ATTGTTTGATCCACGTGATTGAT 57.097 34.783 19.30 11.47 32.41 2.57
2230 2301 7.011950 GGTATATTGTTTGATCCACGTGATTGA 59.988 37.037 19.30 6.25 32.41 2.57
2231 2302 7.132213 GGTATATTGTTTGATCCACGTGATTG 58.868 38.462 19.30 0.00 32.41 2.67
2232 2303 6.018262 CGGTATATTGTTTGATCCACGTGATT 60.018 38.462 19.30 3.07 32.41 2.57
2233 2304 5.465390 CGGTATATTGTTTGATCCACGTGAT 59.535 40.000 19.30 8.71 36.01 3.06
2234 2305 4.806775 CGGTATATTGTTTGATCCACGTGA 59.193 41.667 19.30 3.36 0.00 4.35
2235 2306 4.806775 TCGGTATATTGTTTGATCCACGTG 59.193 41.667 9.08 9.08 0.00 4.49
2236 2307 5.013568 TCGGTATATTGTTTGATCCACGT 57.986 39.130 0.00 0.00 0.00 4.49
2237 2308 5.558273 GCTTCGGTATATTGTTTGATCCACG 60.558 44.000 0.00 0.00 0.00 4.94
2238 2309 5.277828 GGCTTCGGTATATTGTTTGATCCAC 60.278 44.000 0.00 0.00 0.00 4.02
2288 2367 4.746034 TCGTGCGCGCAAAAGAATTTGA 62.746 45.455 38.24 18.07 46.16 2.69
2304 2383 2.486966 GGCCAGCAAGATTCGTGC 59.513 61.111 15.59 15.59 42.55 5.34
2307 2386 2.753966 CGTGGGCCAGCAAGATTCG 61.754 63.158 6.40 0.00 0.00 3.34
2319 2398 2.203195 TGGATGCATAGCGTGGGC 60.203 61.111 0.00 0.00 40.37 5.36
2325 2404 1.502163 GAGCACCGTGGATGCATAGC 61.502 60.000 0.00 0.00 45.92 2.97
2327 2406 0.104855 GAGAGCACCGTGGATGCATA 59.895 55.000 0.00 0.00 45.92 3.14
2339 2418 2.479389 CGAGTCCAGAATCAGAGAGCAC 60.479 54.545 0.00 0.00 0.00 4.40
2340 2419 1.747924 CGAGTCCAGAATCAGAGAGCA 59.252 52.381 0.00 0.00 0.00 4.26
2350 2429 5.470368 CAGAAGATTGTAACGAGTCCAGAA 58.530 41.667 0.00 0.00 0.00 3.02
2355 2434 5.061920 AGTCCAGAAGATTGTAACGAGTC 57.938 43.478 0.00 0.00 0.00 3.36
2358 2437 6.208007 TGACTTAGTCCAGAAGATTGTAACGA 59.792 38.462 10.10 0.00 0.00 3.85
2361 2440 7.759886 CGAATGACTTAGTCCAGAAGATTGTAA 59.240 37.037 10.10 0.00 0.00 2.41
2373 2452 2.961526 TCCAGCGAATGACTTAGTCC 57.038 50.000 10.10 0.00 0.00 3.85
2397 2476 0.742990 TTGCCAGATTAACCTCGCGG 60.743 55.000 6.13 0.00 0.00 6.46
2437 2536 3.418995 ACGCACTGAACTAGAGAAGGTA 58.581 45.455 0.00 0.00 0.00 3.08
2457 2556 3.412237 TTGGCTACCAACCTCTACAAC 57.588 47.619 0.00 0.00 38.75 3.32
2472 2573 1.339151 GGATCAAGTTCGAGGTTGGCT 60.339 52.381 8.49 0.00 0.00 4.75
2473 2574 1.087501 GGATCAAGTTCGAGGTTGGC 58.912 55.000 8.49 2.93 0.00 4.52
2474 2575 2.472695 TGGATCAAGTTCGAGGTTGG 57.527 50.000 8.49 0.00 0.00 3.77
2475 2576 3.062639 CGAATGGATCAAGTTCGAGGTTG 59.937 47.826 16.54 3.08 45.40 3.77
2476 2577 3.262420 CGAATGGATCAAGTTCGAGGTT 58.738 45.455 16.54 0.00 45.40 3.50
2493 2594 5.308825 GGTGATCCATCAACTAATCCGAAT 58.691 41.667 0.00 0.00 41.25 3.34
2495 2596 3.243737 CGGTGATCCATCAACTAATCCGA 60.244 47.826 7.83 0.00 42.28 4.55
2496 2597 3.059884 CGGTGATCCATCAACTAATCCG 58.940 50.000 3.16 2.02 42.28 4.18
2514 2615 0.826715 CTGGATGGAGTGATGACGGT 59.173 55.000 0.00 0.00 0.00 4.83
2518 2619 1.761198 CTGAGCTGGATGGAGTGATGA 59.239 52.381 0.00 0.00 0.00 2.92
2563 2697 1.478510 AGGTACAACTCGGAGCTCATG 59.521 52.381 17.19 7.50 0.00 3.07
2591 2725 2.045926 CTCCTTTCTGCCCCCACG 60.046 66.667 0.00 0.00 0.00 4.94
2593 2727 1.465188 TTCCTCCTTTCTGCCCCCA 60.465 57.895 0.00 0.00 0.00 4.96
2648 2785 3.003793 CCAGAGATTTCATCAGCAGCATG 59.996 47.826 0.00 0.00 40.87 4.06
2649 2786 3.215151 CCAGAGATTTCATCAGCAGCAT 58.785 45.455 0.00 0.00 0.00 3.79
2650 2787 2.026542 ACCAGAGATTTCATCAGCAGCA 60.027 45.455 0.00 0.00 0.00 4.41
2653 2790 4.577693 GCATTACCAGAGATTTCATCAGCA 59.422 41.667 0.00 0.00 0.00 4.41
2657 2794 3.058639 GCGGCATTACCAGAGATTTCATC 60.059 47.826 0.00 0.00 39.03 2.92
2660 2797 2.565841 AGCGGCATTACCAGAGATTTC 58.434 47.619 1.45 0.00 39.03 2.17
2662 2799 2.700897 ACTAGCGGCATTACCAGAGATT 59.299 45.455 1.45 0.00 39.03 2.40
2663 2800 2.320781 ACTAGCGGCATTACCAGAGAT 58.679 47.619 1.45 0.00 39.03 2.75
2681 2818 4.345257 ACTCTCAACTGTGTGTATGGAACT 59.655 41.667 0.00 0.00 0.00 3.01
2687 2824 6.582636 TCAGAAAACTCTCAACTGTGTGTAT 58.417 36.000 0.00 0.00 0.00 2.29
2723 2928 1.808945 GAAATGTCAGCTCACAGGGTG 59.191 52.381 0.00 0.00 36.21 4.61
2728 2933 2.542020 TTCGGAAATGTCAGCTCACA 57.458 45.000 0.00 0.00 0.00 3.58
2814 5747 2.770164 AGAACATTGTTCCTCTCCGG 57.230 50.000 22.70 0.00 0.00 5.14
2894 5827 2.037772 GGAAGAGAGCAAGGTCTTGTCA 59.962 50.000 11.71 0.00 42.31 3.58
3143 6076 4.254709 AGCGGTGACAAGCCAGCA 62.255 61.111 0.00 0.00 34.46 4.41
3155 6088 3.793060 ACTGCCAAGTAGAGCGGT 58.207 55.556 0.00 0.00 43.72 5.68
3311 6249 6.207213 ACTTTCAGAGTCTACTACAAACACG 58.793 40.000 0.00 0.00 31.20 4.49
3337 6277 7.716799 AGGGTTGACAAATCTGCATAAATTA 57.283 32.000 0.00 0.00 0.00 1.40
3338 6278 6.610075 AGGGTTGACAAATCTGCATAAATT 57.390 33.333 0.00 0.00 0.00 1.82
3339 6279 6.211184 TCAAGGGTTGACAAATCTGCATAAAT 59.789 34.615 0.00 0.00 34.08 1.40
3340 6280 5.538053 TCAAGGGTTGACAAATCTGCATAAA 59.462 36.000 0.00 0.00 34.08 1.40
3341 6281 5.076182 TCAAGGGTTGACAAATCTGCATAA 58.924 37.500 0.00 0.00 34.08 1.90
3426 6376 2.203451 CAGGGATGGGCCAGATGC 60.203 66.667 13.78 0.13 38.95 3.91
4381 7346 2.654877 GACGCCTTCCCGAAGACA 59.345 61.111 6.01 0.00 40.79 3.41
4408 7373 1.878656 CGAAGCTCTTCCACGACCCT 61.879 60.000 4.23 0.00 36.27 4.34
4836 7801 2.769120 CCGAGCTAGGGGAGGAGGA 61.769 68.421 4.68 0.00 0.00 3.71
4837 7802 2.203567 CCGAGCTAGGGGAGGAGG 60.204 72.222 4.68 0.00 0.00 4.30
4844 7809 2.433231 GATGCTGCTCCGAGCTAGGG 62.433 65.000 20.87 4.90 42.97 3.53
4850 7815 1.386533 AATTTGGATGCTGCTCCGAG 58.613 50.000 0.00 0.00 38.21 4.63
4851 7816 2.170397 TCTAATTTGGATGCTGCTCCGA 59.830 45.455 0.00 2.68 38.21 4.55
4852 7817 2.564771 TCTAATTTGGATGCTGCTCCG 58.435 47.619 0.00 0.00 38.21 4.63
4853 7818 4.989279 TTTCTAATTTGGATGCTGCTCC 57.011 40.909 0.00 6.21 35.74 4.70
4883 7851 2.888414 TGGTTTTAACTTAGCACCCAGC 59.112 45.455 0.00 0.00 46.19 4.85
4895 7863 5.849510 ACCAATTGCTAACCTGGTTTTAAC 58.150 37.500 18.58 5.71 39.14 2.01
4896 7864 6.778559 AGTACCAATTGCTAACCTGGTTTTAA 59.221 34.615 18.58 10.79 42.23 1.52
4978 15709 3.120321 TGAAAACTTCGGCAGCTTCTA 57.880 42.857 0.00 0.00 0.00 2.10
5034 15765 4.887071 TGAATTGGTATATCAAAGCGCCTT 59.113 37.500 2.29 0.00 0.00 4.35
5075 15806 2.116366 TGATCGCGTCACGTATCATTG 58.884 47.619 5.77 0.00 44.19 2.82
5082 15813 1.796355 CGTTCTGATCGCGTCACGT 60.796 57.895 5.77 0.00 44.19 4.49
5099 15830 1.525197 TGAAAACAGCTAGTGAACGCG 59.475 47.619 3.53 3.53 0.00 6.01
5185 15916 9.118300 AGAAGCAACATATCCTTATCTTTCTTG 57.882 33.333 0.00 0.00 0.00 3.02
5191 15922 7.222872 CAAGGAGAAGCAACATATCCTTATCT 58.777 38.462 4.57 0.00 46.19 1.98
5205 15936 1.817357 CATCTGTGCAAGGAGAAGCA 58.183 50.000 0.00 0.00 38.65 3.91
5270 16001 0.882927 TTGGCGAGGAAACAACGGAG 60.883 55.000 0.00 0.00 34.08 4.63
5326 16057 4.646492 AGAACAAAGCCATAATCCACCATC 59.354 41.667 0.00 0.00 0.00 3.51
5349 16080 4.101585 ACAGTTCAGATGTCTCTTGGTCAA 59.898 41.667 0.00 0.00 0.00 3.18
5405 16136 2.978156 AAATTTCTGAGACCCCTGCA 57.022 45.000 0.00 0.00 0.00 4.41
5439 16170 3.084786 GGGCTTGCCATTCCATCTATAC 58.915 50.000 14.04 0.00 0.00 1.47
5506 16237 2.015736 ACTTACATGCCTCGCTCTTG 57.984 50.000 0.00 0.00 0.00 3.02
5512 16243 5.592054 TGATCTAGAAACTTACATGCCTCG 58.408 41.667 0.00 0.00 0.00 4.63
5548 16279 5.779241 TCTTTGAATCAGGTACCCATCTT 57.221 39.130 8.74 0.00 0.00 2.40
5549 16280 5.983333 ATCTTTGAATCAGGTACCCATCT 57.017 39.130 8.74 0.00 0.00 2.90
5571 16302 1.600013 GTGCAACCAACACACGATGTA 59.400 47.619 0.00 0.00 42.31 2.29
5593 16324 2.042404 CTGGCCTCCTCTCCATCAGC 62.042 65.000 3.32 0.00 0.00 4.26
5594 16325 0.398239 TCTGGCCTCCTCTCCATCAG 60.398 60.000 3.32 0.00 0.00 2.90
5610 16341 2.376808 AGGCATTGTCGACTTCTCTG 57.623 50.000 17.92 7.89 0.00 3.35
5619 16350 1.666888 GCTGTTTGGAAGGCATTGTCG 60.667 52.381 0.00 0.00 0.00 4.35
5640 16371 6.732531 ATGTTACTCACAGTGTCATCATTG 57.267 37.500 0.00 0.00 39.40 2.82
5641 16372 8.886719 CATAATGTTACTCACAGTGTCATCATT 58.113 33.333 0.00 8.98 39.40 2.57
5652 16383 4.384098 CCCTCCAGCATAATGTTACTCACA 60.384 45.833 0.00 0.00 40.71 3.58
5653 16384 4.130118 CCCTCCAGCATAATGTTACTCAC 58.870 47.826 0.00 0.00 0.00 3.51
5654 16385 3.136443 CCCCTCCAGCATAATGTTACTCA 59.864 47.826 0.00 0.00 0.00 3.41
5655 16386 3.744660 CCCCTCCAGCATAATGTTACTC 58.255 50.000 0.00 0.00 0.00 2.59
5656 16387 2.158608 GCCCCTCCAGCATAATGTTACT 60.159 50.000 0.00 0.00 0.00 2.24
5657 16388 2.158608 AGCCCCTCCAGCATAATGTTAC 60.159 50.000 0.00 0.00 0.00 2.50
5658 16389 2.135189 AGCCCCTCCAGCATAATGTTA 58.865 47.619 0.00 0.00 0.00 2.41
5659 16390 0.929244 AGCCCCTCCAGCATAATGTT 59.071 50.000 0.00 0.00 0.00 2.71
5660 16391 1.701847 CTAGCCCCTCCAGCATAATGT 59.298 52.381 0.00 0.00 0.00 2.71
5661 16392 1.980765 TCTAGCCCCTCCAGCATAATG 59.019 52.381 0.00 0.00 0.00 1.90
5662 16393 2.373502 GTTCTAGCCCCTCCAGCATAAT 59.626 50.000 0.00 0.00 0.00 1.28
5663 16394 1.768870 GTTCTAGCCCCTCCAGCATAA 59.231 52.381 0.00 0.00 0.00 1.90
5664 16395 1.424638 GTTCTAGCCCCTCCAGCATA 58.575 55.000 0.00 0.00 0.00 3.14
5665 16396 1.690219 CGTTCTAGCCCCTCCAGCAT 61.690 60.000 0.00 0.00 0.00 3.79
5666 16397 2.359169 CGTTCTAGCCCCTCCAGCA 61.359 63.158 0.00 0.00 0.00 4.41
5667 16398 2.022240 CTCGTTCTAGCCCCTCCAGC 62.022 65.000 0.00 0.00 0.00 4.85
5668 16399 0.684805 ACTCGTTCTAGCCCCTCCAG 60.685 60.000 0.00 0.00 0.00 3.86
5669 16400 0.683504 GACTCGTTCTAGCCCCTCCA 60.684 60.000 0.00 0.00 0.00 3.86
5670 16401 0.396001 AGACTCGTTCTAGCCCCTCC 60.396 60.000 0.00 0.00 30.17 4.30
5671 16402 1.406180 GAAGACTCGTTCTAGCCCCTC 59.594 57.143 0.00 0.00 32.51 4.30
5672 16403 1.476477 GAAGACTCGTTCTAGCCCCT 58.524 55.000 0.00 0.00 32.51 4.79
5673 16404 0.460722 GGAAGACTCGTTCTAGCCCC 59.539 60.000 0.00 0.00 32.51 5.80
5674 16405 1.183549 TGGAAGACTCGTTCTAGCCC 58.816 55.000 0.00 0.00 32.51 5.19
5675 16406 2.994578 GTTTGGAAGACTCGTTCTAGCC 59.005 50.000 0.00 0.00 32.51 3.93
5676 16407 3.650139 TGTTTGGAAGACTCGTTCTAGC 58.350 45.455 0.00 0.00 32.51 3.42
5677 16408 4.148348 CGTTGTTTGGAAGACTCGTTCTAG 59.852 45.833 0.00 0.00 32.51 2.43
5678 16409 4.046462 CGTTGTTTGGAAGACTCGTTCTA 58.954 43.478 0.00 0.00 32.51 2.10
5679 16410 2.864343 CGTTGTTTGGAAGACTCGTTCT 59.136 45.455 0.00 0.00 35.32 3.01
5680 16411 2.599142 GCGTTGTTTGGAAGACTCGTTC 60.599 50.000 0.00 0.00 0.00 3.95
5681 16412 1.329599 GCGTTGTTTGGAAGACTCGTT 59.670 47.619 0.00 0.00 0.00 3.85
5682 16413 0.935196 GCGTTGTTTGGAAGACTCGT 59.065 50.000 0.00 0.00 0.00 4.18
5683 16414 0.111266 CGCGTTGTTTGGAAGACTCG 60.111 55.000 0.00 0.00 0.00 4.18
5684 16415 0.234884 CCGCGTTGTTTGGAAGACTC 59.765 55.000 4.92 0.00 0.00 3.36
5685 16416 1.782028 GCCGCGTTGTTTGGAAGACT 61.782 55.000 4.92 0.00 0.00 3.24
5686 16417 1.370051 GCCGCGTTGTTTGGAAGAC 60.370 57.895 4.92 0.00 0.00 3.01
5687 16418 2.887889 CGCCGCGTTGTTTGGAAGA 61.888 57.895 4.92 0.00 0.00 2.87
5688 16419 2.426752 CGCCGCGTTGTTTGGAAG 60.427 61.111 4.92 0.00 0.00 3.46
5689 16420 2.895865 TCGCCGCGTTGTTTGGAA 60.896 55.556 13.39 0.00 0.00 3.53
5690 16421 3.641986 GTCGCCGCGTTGTTTGGA 61.642 61.111 13.39 0.00 0.00 3.53
5691 16422 2.725275 ATTGTCGCCGCGTTGTTTGG 62.725 55.000 13.39 0.00 0.00 3.28
5692 16423 1.369930 ATTGTCGCCGCGTTGTTTG 60.370 52.632 13.39 0.00 0.00 2.93
5693 16424 1.369930 CATTGTCGCCGCGTTGTTT 60.370 52.632 13.39 0.00 0.00 2.83
5694 16425 2.251075 CATTGTCGCCGCGTTGTT 59.749 55.556 13.39 0.00 0.00 2.83
5695 16426 2.970324 ACATTGTCGCCGCGTTGT 60.970 55.556 13.39 9.68 0.00 3.32
5696 16427 2.499520 CACATTGTCGCCGCGTTG 60.500 61.111 13.39 9.08 0.00 4.10
5697 16428 2.663520 TCACATTGTCGCCGCGTT 60.664 55.556 13.39 0.00 0.00 4.84
5698 16429 3.112075 CTCACATTGTCGCCGCGT 61.112 61.111 13.39 0.00 0.00 6.01
5699 16430 4.505217 GCTCACATTGTCGCCGCG 62.505 66.667 6.39 6.39 0.00 6.46
5700 16431 3.372676 CTGCTCACATTGTCGCCGC 62.373 63.158 5.44 0.00 0.00 6.53
5701 16432 2.780643 CTGCTCACATTGTCGCCG 59.219 61.111 5.44 0.00 0.00 6.46
5702 16433 1.651240 ATGCTGCTCACATTGTCGCC 61.651 55.000 0.00 0.00 0.00 5.54
5703 16434 1.009078 TATGCTGCTCACATTGTCGC 58.991 50.000 0.00 1.63 0.00 5.19
5704 16435 2.030091 CAGTATGCTGCTCACATTGTCG 59.970 50.000 0.00 0.00 35.77 4.35
5705 16436 3.005554 ACAGTATGCTGCTCACATTGTC 58.994 45.455 11.09 0.00 46.30 3.18
5706 16437 3.063510 ACAGTATGCTGCTCACATTGT 57.936 42.857 11.09 0.00 46.30 2.71
5707 16438 3.427098 CCAACAGTATGCTGCTCACATTG 60.427 47.826 11.09 6.65 46.30 2.82
5708 16439 2.751259 CCAACAGTATGCTGCTCACATT 59.249 45.455 11.09 0.00 46.30 2.71
5709 16440 2.026915 TCCAACAGTATGCTGCTCACAT 60.027 45.455 11.09 0.00 46.30 3.21
5718 16449 0.837272 TAGCCCCTCCAACAGTATGC 59.163 55.000 0.00 0.00 42.53 3.14
5750 16594 4.456911 ACGATTCGTCTTCCTGTAACACTA 59.543 41.667 5.75 0.00 33.69 2.74
5769 16613 1.858458 CGCAATGACAATACGGACGAT 59.142 47.619 0.00 0.00 0.00 3.73
5772 16616 2.607635 ACATCGCAATGACAATACGGAC 59.392 45.455 0.00 0.00 36.67 4.79
5784 16628 1.064463 ACCATCCCTTGACATCGCAAT 60.064 47.619 0.00 0.00 0.00 3.56
5798 16642 3.575965 AAAGAAACGCATCAACCATCC 57.424 42.857 0.00 0.00 0.00 3.51
5823 16667 8.958119 TGACACTCCAATTCCTTACATATTAC 57.042 34.615 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.