Multiple sequence alignment - TraesCS5D01G442600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G442600 chr5D 100.000 2459 0 0 1 2459 494656954 494659412 0.000000e+00 4542
1 TraesCS5D01G442600 chr5D 81.171 1110 187 15 330 1424 494687112 494688214 0.000000e+00 872
2 TraesCS5D01G442600 chr5D 77.064 1308 216 46 363 1655 494645925 494647163 0.000000e+00 676
3 TraesCS5D01G442600 chr5D 93.778 450 17 4 2010 2459 126189966 126189528 0.000000e+00 665
4 TraesCS5D01G442600 chr5B 92.285 1724 113 9 292 2008 610882792 610884502 0.000000e+00 2429
5 TraesCS5D01G442600 chr5B 83.650 1315 195 13 374 1683 610880435 610881734 0.000000e+00 1219
6 TraesCS5D01G442600 chr5B 82.038 1119 172 21 360 1468 610927126 610928225 0.000000e+00 926
7 TraesCS5D01G442600 chr5B 78.639 1367 215 40 208 1552 610965417 610966728 0.000000e+00 835
8 TraesCS5D01G442600 chr5B 80.169 1064 190 14 411 1461 611129453 611130508 0.000000e+00 776
9 TraesCS5D01G442600 chr5B 78.019 1292 203 43 363 1638 610867396 610868622 0.000000e+00 737
10 TraesCS5D01G442600 chr5A 92.299 922 67 3 572 1493 618188762 618189679 0.000000e+00 1306
11 TraesCS5D01G442600 chr5A 82.436 1281 195 20 128 1402 618161131 618162387 0.000000e+00 1092
12 TraesCS5D01G442600 chr5A 79.352 1419 227 41 81 1461 618306946 618308336 0.000000e+00 937
13 TraesCS5D01G442600 chr5A 79.813 1174 182 27 358 1516 618478095 618479228 0.000000e+00 804
14 TraesCS5D01G442600 chr5A 78.135 1308 229 29 163 1468 618273040 618274292 0.000000e+00 778
15 TraesCS5D01G442600 chr5A 77.914 1227 206 25 363 1578 618125865 618127037 0.000000e+00 704
16 TraesCS5D01G442600 chr5A 78.877 1051 161 29 515 1553 618430306 618431307 0.000000e+00 654
17 TraesCS5D01G442600 chr5A 91.053 380 21 8 1492 1867 618189841 618190211 3.650000e-138 501
18 TraesCS5D01G442600 chr5A 95.775 142 4 2 1869 2008 618190313 618190454 6.840000e-56 228
19 TraesCS5D01G442600 chr7A 98.451 452 5 1 2010 2459 88813785 88814236 0.000000e+00 795
20 TraesCS5D01G442600 chr2D 95.842 457 15 4 2005 2459 35526711 35527165 0.000000e+00 736
21 TraesCS5D01G442600 chrUn 95.556 450 17 3 2010 2459 91848301 91848747 0.000000e+00 717
22 TraesCS5D01G442600 chr7D 95.333 450 16 4 2010 2459 168266673 168267117 0.000000e+00 710
23 TraesCS5D01G442600 chr1A 93.556 450 27 2 2010 2459 502527330 502527777 0.000000e+00 669
24 TraesCS5D01G442600 chr1B 90.687 451 25 9 2010 2459 578618357 578618791 3.520000e-163 584
25 TraesCS5D01G442600 chr6D 85.333 450 50 7 2012 2459 455272546 455272981 3.730000e-123 451
26 TraesCS5D01G442600 chr3A 84.667 450 51 10 2012 2459 701878716 701879149 1.350000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G442600 chr5D 494656954 494659412 2458 False 4542.000000 4542 100.000000 1 2459 1 chr5D.!!$F2 2458
1 TraesCS5D01G442600 chr5D 494687112 494688214 1102 False 872.000000 872 81.171000 330 1424 1 chr5D.!!$F3 1094
2 TraesCS5D01G442600 chr5D 494645925 494647163 1238 False 676.000000 676 77.064000 363 1655 1 chr5D.!!$F1 1292
3 TraesCS5D01G442600 chr5B 610880435 610884502 4067 False 1824.000000 2429 87.967500 292 2008 2 chr5B.!!$F5 1716
4 TraesCS5D01G442600 chr5B 610927126 610928225 1099 False 926.000000 926 82.038000 360 1468 1 chr5B.!!$F2 1108
5 TraesCS5D01G442600 chr5B 610965417 610966728 1311 False 835.000000 835 78.639000 208 1552 1 chr5B.!!$F3 1344
6 TraesCS5D01G442600 chr5B 611129453 611130508 1055 False 776.000000 776 80.169000 411 1461 1 chr5B.!!$F4 1050
7 TraesCS5D01G442600 chr5B 610867396 610868622 1226 False 737.000000 737 78.019000 363 1638 1 chr5B.!!$F1 1275
8 TraesCS5D01G442600 chr5A 618161131 618162387 1256 False 1092.000000 1092 82.436000 128 1402 1 chr5A.!!$F2 1274
9 TraesCS5D01G442600 chr5A 618306946 618308336 1390 False 937.000000 937 79.352000 81 1461 1 chr5A.!!$F4 1380
10 TraesCS5D01G442600 chr5A 618478095 618479228 1133 False 804.000000 804 79.813000 358 1516 1 chr5A.!!$F6 1158
11 TraesCS5D01G442600 chr5A 618273040 618274292 1252 False 778.000000 778 78.135000 163 1468 1 chr5A.!!$F3 1305
12 TraesCS5D01G442600 chr5A 618125865 618127037 1172 False 704.000000 704 77.914000 363 1578 1 chr5A.!!$F1 1215
13 TraesCS5D01G442600 chr5A 618188762 618190454 1692 False 678.333333 1306 93.042333 572 2008 3 chr5A.!!$F7 1436
14 TraesCS5D01G442600 chr5A 618430306 618431307 1001 False 654.000000 654 78.877000 515 1553 1 chr5A.!!$F5 1038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.03759 TCCAGTGGTGATTTTCCCCG 59.962 55.0 9.54 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 4826 1.150827 GCACGGGCGTTTAACTAGTT 58.849 50.0 13.68 13.68 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.352422 ACGCATGCATCCAGTGGT 59.648 55.556 19.57 1.22 0.00 4.16
18 19 2.042259 ACGCATGCATCCAGTGGTG 61.042 57.895 19.57 8.15 0.00 4.17
19 20 1.746239 CGCATGCATCCAGTGGTGA 60.746 57.895 19.57 0.00 0.00 4.02
20 21 1.099295 CGCATGCATCCAGTGGTGAT 61.099 55.000 19.57 0.00 0.00 3.06
21 22 1.108776 GCATGCATCCAGTGGTGATT 58.891 50.000 14.21 0.00 0.00 2.57
22 23 1.479323 GCATGCATCCAGTGGTGATTT 59.521 47.619 14.21 0.00 0.00 2.17
23 24 2.093869 GCATGCATCCAGTGGTGATTTT 60.094 45.455 14.21 0.00 0.00 1.82
24 25 3.777478 CATGCATCCAGTGGTGATTTTC 58.223 45.455 9.54 0.00 0.00 2.29
25 26 2.170166 TGCATCCAGTGGTGATTTTCC 58.830 47.619 9.54 0.00 0.00 3.13
26 27 1.478105 GCATCCAGTGGTGATTTTCCC 59.522 52.381 9.54 0.00 0.00 3.97
27 28 2.102578 CATCCAGTGGTGATTTTCCCC 58.897 52.381 9.54 0.00 0.00 4.81
28 29 0.037590 TCCAGTGGTGATTTTCCCCG 59.962 55.000 9.54 0.00 0.00 5.73
29 30 0.251165 CCAGTGGTGATTTTCCCCGT 60.251 55.000 0.00 0.00 0.00 5.28
30 31 1.165270 CAGTGGTGATTTTCCCCGTC 58.835 55.000 0.00 0.00 0.00 4.79
31 32 0.321298 AGTGGTGATTTTCCCCGTCG 60.321 55.000 0.00 0.00 0.00 5.12
32 33 0.604511 GTGGTGATTTTCCCCGTCGT 60.605 55.000 0.00 0.00 0.00 4.34
33 34 0.108963 TGGTGATTTTCCCCGTCGTT 59.891 50.000 0.00 0.00 0.00 3.85
34 35 0.800631 GGTGATTTTCCCCGTCGTTC 59.199 55.000 0.00 0.00 0.00 3.95
35 36 1.515081 GTGATTTTCCCCGTCGTTCA 58.485 50.000 0.00 0.00 0.00 3.18
36 37 1.463444 GTGATTTTCCCCGTCGTTCAG 59.537 52.381 0.00 0.00 0.00 3.02
37 38 1.071071 TGATTTTCCCCGTCGTTCAGT 59.929 47.619 0.00 0.00 0.00 3.41
38 39 1.463444 GATTTTCCCCGTCGTTCAGTG 59.537 52.381 0.00 0.00 0.00 3.66
39 40 0.178533 TTTTCCCCGTCGTTCAGTGT 59.821 50.000 0.00 0.00 0.00 3.55
40 41 0.531090 TTTCCCCGTCGTTCAGTGTG 60.531 55.000 0.00 0.00 0.00 3.82
41 42 1.393487 TTCCCCGTCGTTCAGTGTGA 61.393 55.000 0.00 0.00 0.00 3.58
42 43 1.663702 CCCCGTCGTTCAGTGTGAC 60.664 63.158 0.00 0.00 0.00 3.67
43 44 1.663702 CCCGTCGTTCAGTGTGACC 60.664 63.158 7.14 0.00 0.00 4.02
44 45 1.362717 CCGTCGTTCAGTGTGACCT 59.637 57.895 7.14 0.00 0.00 3.85
45 46 0.939577 CCGTCGTTCAGTGTGACCTG 60.940 60.000 7.14 0.00 0.00 4.00
46 47 0.939577 CGTCGTTCAGTGTGACCTGG 60.940 60.000 0.00 0.00 33.14 4.45
47 48 0.387929 GTCGTTCAGTGTGACCTGGA 59.612 55.000 0.00 0.00 33.14 3.86
48 49 1.000955 GTCGTTCAGTGTGACCTGGAT 59.999 52.381 0.00 0.00 33.14 3.41
49 50 1.272490 TCGTTCAGTGTGACCTGGATC 59.728 52.381 0.00 0.00 33.14 3.36
50 51 1.000843 CGTTCAGTGTGACCTGGATCA 59.999 52.381 0.00 0.00 33.14 2.92
51 52 2.547855 CGTTCAGTGTGACCTGGATCAA 60.548 50.000 0.00 0.00 33.14 2.57
52 53 2.808543 GTTCAGTGTGACCTGGATCAAC 59.191 50.000 0.00 2.90 33.14 3.18
53 54 2.046292 TCAGTGTGACCTGGATCAACA 58.954 47.619 0.00 0.00 33.14 3.33
54 55 2.437651 TCAGTGTGACCTGGATCAACAA 59.562 45.455 0.00 0.00 33.14 2.83
55 56 3.072915 TCAGTGTGACCTGGATCAACAAT 59.927 43.478 0.00 0.00 33.14 2.71
56 57 3.822735 CAGTGTGACCTGGATCAACAATT 59.177 43.478 0.00 0.00 0.00 2.32
57 58 4.279169 CAGTGTGACCTGGATCAACAATTT 59.721 41.667 0.00 0.00 0.00 1.82
58 59 4.279169 AGTGTGACCTGGATCAACAATTTG 59.721 41.667 0.00 0.00 0.00 2.32
59 60 4.278170 GTGTGACCTGGATCAACAATTTGA 59.722 41.667 0.00 0.00 45.93 2.69
104 105 2.824041 CATCGTGGCCCCCTTTCG 60.824 66.667 0.00 0.00 0.00 3.46
117 118 1.153249 CTTTCGCCTCCCGCCAATA 60.153 57.895 0.00 0.00 36.73 1.90
186 187 7.161773 AGTAGTAAATGACATGCAGCAAATT 57.838 32.000 0.00 0.00 0.00 1.82
188 189 8.739039 AGTAGTAAATGACATGCAGCAAATTTA 58.261 29.630 0.00 5.62 0.00 1.40
197 198 0.440758 CAGCAAATTTACGCGGACGA 59.559 50.000 12.47 0.00 43.93 4.20
206 207 1.342555 TACGCGGACGAAAACATCTG 58.657 50.000 12.47 0.00 43.93 2.90
214 215 3.804873 GGACGAAAACATCTGCTAGATCC 59.195 47.826 0.00 0.00 31.32 3.36
227 229 3.578282 TGCTAGATCCAAGTGTGAACAGA 59.422 43.478 0.00 0.00 0.00 3.41
246 249 3.126171 CAGACCACTGTTTTCGTTTGACA 59.874 43.478 0.00 0.00 39.11 3.58
282 285 2.817258 TGGATTTTACTTCCCAAGTGCG 59.183 45.455 0.00 0.00 42.84 5.34
290 299 2.125350 CCCAAGTGCGCCTCTCTC 60.125 66.667 4.18 0.00 0.00 3.20
354 368 1.639635 CCTCCCATCCCACTCCAAGG 61.640 65.000 0.00 0.00 0.00 3.61
370 384 0.909623 AAGGTGTACTCCCAATCCCG 59.090 55.000 10.36 0.00 0.00 5.14
372 386 1.623542 GGTGTACTCCCAATCCCGCT 61.624 60.000 2.33 0.00 0.00 5.52
373 394 0.179081 GTGTACTCCCAATCCCGCTC 60.179 60.000 0.00 0.00 0.00 5.03
412 433 1.407851 GCAAGATCTCTGTGGCCATGA 60.408 52.381 9.72 10.15 0.00 3.07
434 473 7.199167 TGATATCTGAGGAAAGGTCATTTGA 57.801 36.000 3.98 0.00 0.00 2.69
479 521 1.589716 GCCAAGGCGCAACTCAAGAT 61.590 55.000 10.83 0.00 0.00 2.40
486 528 1.710339 GCAACTCAAGATCGGCGAC 59.290 57.895 13.76 6.55 0.00 5.19
544 3033 4.710375 ACAACTGGACCGTGAGATATTACT 59.290 41.667 0.00 0.00 0.00 2.24
568 3060 1.882625 GGTGTCTGCGCGCATGATA 60.883 57.895 36.48 26.38 0.00 2.15
581 3073 3.676049 GCGCATGATACCGATTCCATCTA 60.676 47.826 0.30 0.00 0.00 1.98
698 3196 0.040942 AGCCATACCAACCCAATGCA 59.959 50.000 0.00 0.00 0.00 3.96
757 3270 2.964464 GAGATCAAGAGGGCTGATCTGA 59.036 50.000 18.39 1.19 45.94 3.27
784 3297 2.152016 CGCCGTACCTGAGAGATGATA 58.848 52.381 0.00 0.00 0.00 2.15
785 3298 2.552743 CGCCGTACCTGAGAGATGATAA 59.447 50.000 0.00 0.00 0.00 1.75
813 3326 3.307269 CCATCAGGTGTGATCTCACTGTT 60.307 47.826 23.17 13.31 46.55 3.16
830 3358 7.344093 TCTCACTGTTATGAAGGAGATCAAGAT 59.656 37.037 0.00 0.00 32.06 2.40
846 3374 5.477607 TCAAGATCGAAGAAACAAGGGTA 57.522 39.130 0.00 0.00 43.58 3.69
852 3380 2.028020 CGAAGAAACAAGGGTAGCTCCT 60.028 50.000 0.00 0.00 39.17 3.69
1206 3742 2.871022 CAGGCTGAAGCAGATATGTGAC 59.129 50.000 9.42 0.00 44.36 3.67
1470 4010 7.650890 TCATGGCAATTTAGTAGTAATGCATG 58.349 34.615 14.76 14.56 0.00 4.06
1471 4011 5.830912 TGGCAATTTAGTAGTAATGCATGC 58.169 37.500 11.82 11.82 0.00 4.06
1472 4012 4.911610 GGCAATTTAGTAGTAATGCATGCG 59.088 41.667 14.09 0.00 0.00 4.73
1523 4226 7.011109 CCATCCAACTTTTAGTACTAATCGGTG 59.989 40.741 15.92 16.46 0.00 4.94
1531 4243 6.897259 TTAGTACTAATCGGTGCAATTGTC 57.103 37.500 11.38 0.07 0.00 3.18
1702 4416 6.174720 TGCCTTCGAAAATGATAGACCTAT 57.825 37.500 0.00 0.00 0.00 2.57
1740 4456 1.796459 ACAACAATCTTACGGACGTGC 59.204 47.619 7.73 0.00 0.00 5.34
1774 4490 6.855914 TCTGCACACGAAATCAGAATAAAAAC 59.144 34.615 0.00 0.00 33.17 2.43
1802 4518 8.734386 GTTCTAGTTTTCATTCAATCTCCACAT 58.266 33.333 0.00 0.00 0.00 3.21
1867 4583 8.747471 AGAACACTTACTAGGTGGATAAAGTAC 58.253 37.037 3.58 0.00 38.83 2.73
2020 4838 7.757097 ACATCTAGATGCAACTAGTTAAACG 57.243 36.000 28.86 11.41 42.39 3.60
2021 4839 6.255887 ACATCTAGATGCAACTAGTTAAACGC 59.744 38.462 28.86 8.22 42.39 4.84
2022 4840 5.107133 TCTAGATGCAACTAGTTAAACGCC 58.893 41.667 25.12 0.00 40.26 5.68
2023 4841 3.007635 AGATGCAACTAGTTAAACGCCC 58.992 45.455 8.04 2.96 0.00 6.13
2024 4842 1.149987 TGCAACTAGTTAAACGCCCG 58.850 50.000 8.04 0.00 0.00 6.13
2025 4843 1.150827 GCAACTAGTTAAACGCCCGT 58.849 50.000 8.04 0.00 0.00 5.28
2026 4844 1.136169 GCAACTAGTTAAACGCCCGTG 60.136 52.381 8.04 0.00 0.00 4.94
2027 4845 1.136169 CAACTAGTTAAACGCCCGTGC 60.136 52.381 8.04 0.00 0.00 5.34
2048 4866 4.650545 CGTTGCTACGGCTTAGTAAAAA 57.349 40.909 13.04 0.00 43.94 1.94
2076 4894 7.821595 AATGTAATTCACAACATTGCTCATG 57.178 32.000 3.97 0.00 43.01 3.07
2078 4896 6.151004 TGTAATTCACAACATTGCTCATGTG 58.849 36.000 3.21 0.00 46.23 3.21
2079 4897 3.646611 TTCACAACATTGCTCATGTGG 57.353 42.857 5.07 3.19 46.23 4.17
2080 4898 1.270274 TCACAACATTGCTCATGTGGC 59.730 47.619 5.07 6.50 46.23 5.01
2081 4899 1.271379 CACAACATTGCTCATGTGGCT 59.729 47.619 12.76 0.00 46.23 4.75
2082 4900 1.965643 ACAACATTGCTCATGTGGCTT 59.034 42.857 12.76 0.00 46.23 4.35
2083 4901 3.057386 CACAACATTGCTCATGTGGCTTA 60.057 43.478 12.76 4.12 46.23 3.09
2084 4902 3.765511 ACAACATTGCTCATGTGGCTTAT 59.234 39.130 12.76 5.77 46.23 1.73
2085 4903 4.949238 ACAACATTGCTCATGTGGCTTATA 59.051 37.500 12.76 0.39 46.23 0.98
2086 4904 5.418524 ACAACATTGCTCATGTGGCTTATAA 59.581 36.000 12.76 0.00 46.23 0.98
2087 4905 6.071447 ACAACATTGCTCATGTGGCTTATAAA 60.071 34.615 12.76 1.95 46.23 1.40
2088 4906 6.720112 ACATTGCTCATGTGGCTTATAAAT 57.280 33.333 12.76 3.73 45.12 1.40
2089 4907 6.509656 ACATTGCTCATGTGGCTTATAAATG 58.490 36.000 12.76 13.93 45.12 2.32
2090 4908 6.097270 ACATTGCTCATGTGGCTTATAAATGT 59.903 34.615 15.55 15.55 45.12 2.71
2091 4909 5.503662 TGCTCATGTGGCTTATAAATGTG 57.496 39.130 12.76 0.00 0.00 3.21
2092 4910 4.949238 TGCTCATGTGGCTTATAAATGTGT 59.051 37.500 12.76 0.00 0.00 3.72
2093 4911 5.418524 TGCTCATGTGGCTTATAAATGTGTT 59.581 36.000 12.76 0.00 0.00 3.32
2094 4912 5.745294 GCTCATGTGGCTTATAAATGTGTTG 59.255 40.000 0.00 0.00 0.00 3.33
2095 4913 5.649557 TCATGTGGCTTATAAATGTGTTGC 58.350 37.500 0.00 0.00 0.00 4.17
2096 4914 4.448537 TGTGGCTTATAAATGTGTTGCC 57.551 40.909 3.35 3.35 39.33 4.52
2097 4915 3.829026 TGTGGCTTATAAATGTGTTGCCA 59.171 39.130 7.95 7.95 45.31 4.92
2098 4916 4.448537 TGGCTTATAAATGTGTTGCCAC 57.551 40.909 7.95 0.00 43.09 5.01
2112 4930 5.713025 GTGTTGCCACAAATATCATCTTGT 58.287 37.500 0.00 0.00 41.44 3.16
2113 4931 6.851609 GTGTTGCCACAAATATCATCTTGTA 58.148 36.000 0.00 0.00 41.44 2.41
2114 4932 6.747280 GTGTTGCCACAAATATCATCTTGTAC 59.253 38.462 0.00 0.00 41.44 2.90
2115 4933 6.658816 TGTTGCCACAAATATCATCTTGTACT 59.341 34.615 0.00 0.00 34.04 2.73
2116 4934 7.176515 TGTTGCCACAAATATCATCTTGTACTT 59.823 33.333 0.00 0.00 34.04 2.24
2117 4935 7.087409 TGCCACAAATATCATCTTGTACTTG 57.913 36.000 0.00 0.00 34.04 3.16
2118 4936 6.883756 TGCCACAAATATCATCTTGTACTTGA 59.116 34.615 0.00 0.00 34.04 3.02
2119 4937 7.557358 TGCCACAAATATCATCTTGTACTTGAT 59.443 33.333 0.00 0.97 34.04 2.57
2120 4938 9.056005 GCCACAAATATCATCTTGTACTTGATA 57.944 33.333 0.00 3.12 36.92 2.15
2141 4959 9.979578 TTGATAATATAACAAAATCCATGTGGC 57.020 29.630 0.00 0.00 34.44 5.01
2142 4960 9.365906 TGATAATATAACAAAATCCATGTGGCT 57.634 29.630 0.00 0.00 34.44 4.75
2143 4961 9.846248 GATAATATAACAAAATCCATGTGGCTC 57.154 33.333 0.00 0.00 34.44 4.70
2144 4962 4.637483 ATAACAAAATCCATGTGGCTCG 57.363 40.909 0.00 0.00 34.44 5.03
2145 4963 1.909700 ACAAAATCCATGTGGCTCGT 58.090 45.000 0.00 0.00 34.44 4.18
2146 4964 3.066291 ACAAAATCCATGTGGCTCGTA 57.934 42.857 0.00 0.00 34.44 3.43
2147 4965 3.620488 ACAAAATCCATGTGGCTCGTAT 58.380 40.909 0.00 0.00 34.44 3.06
2148 4966 4.016444 ACAAAATCCATGTGGCTCGTATT 58.984 39.130 0.00 0.00 34.44 1.89
2149 4967 4.096382 ACAAAATCCATGTGGCTCGTATTC 59.904 41.667 0.00 0.00 34.44 1.75
2150 4968 3.558931 AATCCATGTGGCTCGTATTCA 57.441 42.857 0.00 0.00 34.44 2.57
2151 4969 3.558931 ATCCATGTGGCTCGTATTCAA 57.441 42.857 0.00 0.00 34.44 2.69
2152 4970 3.342377 TCCATGTGGCTCGTATTCAAA 57.658 42.857 0.00 0.00 34.44 2.69
2153 4971 3.006940 TCCATGTGGCTCGTATTCAAAC 58.993 45.455 0.00 0.00 34.44 2.93
2154 4972 2.097466 CCATGTGGCTCGTATTCAAACC 59.903 50.000 0.00 0.00 0.00 3.27
2155 4973 2.552599 TGTGGCTCGTATTCAAACCA 57.447 45.000 0.00 0.00 0.00 3.67
2156 4974 2.147958 TGTGGCTCGTATTCAAACCAC 58.852 47.619 3.06 3.06 46.15 4.16
2157 4975 1.467342 GTGGCTCGTATTCAAACCACC 59.533 52.381 0.00 0.00 41.34 4.61
2158 4976 1.072489 TGGCTCGTATTCAAACCACCA 59.928 47.619 0.00 0.00 0.00 4.17
2159 4977 2.290641 TGGCTCGTATTCAAACCACCAT 60.291 45.455 0.00 0.00 0.00 3.55
2160 4978 2.097466 GGCTCGTATTCAAACCACCATG 59.903 50.000 0.00 0.00 0.00 3.66
2161 4979 3.006940 GCTCGTATTCAAACCACCATGA 58.993 45.455 0.00 0.00 0.00 3.07
2162 4980 3.181510 GCTCGTATTCAAACCACCATGAC 60.182 47.826 0.00 0.00 0.00 3.06
2163 4981 4.253685 CTCGTATTCAAACCACCATGACT 58.746 43.478 0.00 0.00 0.00 3.41
2164 4982 4.250464 TCGTATTCAAACCACCATGACTC 58.750 43.478 0.00 0.00 0.00 3.36
2165 4983 4.000325 CGTATTCAAACCACCATGACTCA 59.000 43.478 0.00 0.00 0.00 3.41
2166 4984 4.454161 CGTATTCAAACCACCATGACTCAA 59.546 41.667 0.00 0.00 0.00 3.02
2167 4985 4.853924 ATTCAAACCACCATGACTCAAC 57.146 40.909 0.00 0.00 0.00 3.18
2168 4986 3.576078 TCAAACCACCATGACTCAACT 57.424 42.857 0.00 0.00 0.00 3.16
2169 4987 3.897239 TCAAACCACCATGACTCAACTT 58.103 40.909 0.00 0.00 0.00 2.66
2170 4988 5.042463 TCAAACCACCATGACTCAACTTA 57.958 39.130 0.00 0.00 0.00 2.24
2171 4989 4.819630 TCAAACCACCATGACTCAACTTAC 59.180 41.667 0.00 0.00 0.00 2.34
2172 4990 3.040147 ACCACCATGACTCAACTTACG 57.960 47.619 0.00 0.00 0.00 3.18
2173 4991 2.631062 ACCACCATGACTCAACTTACGA 59.369 45.455 0.00 0.00 0.00 3.43
2174 4992 3.070446 ACCACCATGACTCAACTTACGAA 59.930 43.478 0.00 0.00 0.00 3.85
2175 4993 3.679980 CCACCATGACTCAACTTACGAAG 59.320 47.826 0.00 0.00 0.00 3.79
2177 4995 4.386049 CACCATGACTCAACTTACGAAGTC 59.614 45.833 0.00 0.00 43.93 3.01
2178 4996 4.281182 ACCATGACTCAACTTACGAAGTCT 59.719 41.667 0.00 0.00 43.93 3.24
2179 4997 5.475909 ACCATGACTCAACTTACGAAGTCTA 59.524 40.000 0.00 0.00 43.93 2.59
2180 4998 5.800941 CCATGACTCAACTTACGAAGTCTAC 59.199 44.000 0.00 0.00 43.93 2.59
2181 4999 5.368256 TGACTCAACTTACGAAGTCTACC 57.632 43.478 0.00 0.00 43.93 3.18
2182 5000 5.068636 TGACTCAACTTACGAAGTCTACCT 58.931 41.667 0.00 0.00 43.93 3.08
2183 5001 5.533903 TGACTCAACTTACGAAGTCTACCTT 59.466 40.000 0.00 0.00 43.93 3.50
2184 5002 6.011476 ACTCAACTTACGAAGTCTACCTTC 57.989 41.667 0.00 0.00 43.93 3.46
2198 5016 8.723942 AAGTCTACCTTCATACTATTGCTTTG 57.276 34.615 0.00 0.00 0.00 2.77
2199 5017 7.852263 AGTCTACCTTCATACTATTGCTTTGT 58.148 34.615 0.00 0.00 0.00 2.83
2200 5018 7.766278 AGTCTACCTTCATACTATTGCTTTGTG 59.234 37.037 0.00 0.00 0.00 3.33
2201 5019 7.549488 GTCTACCTTCATACTATTGCTTTGTGT 59.451 37.037 0.00 0.00 0.00 3.72
2202 5020 8.100791 TCTACCTTCATACTATTGCTTTGTGTT 58.899 33.333 0.00 0.00 0.00 3.32
2203 5021 7.145932 ACCTTCATACTATTGCTTTGTGTTC 57.854 36.000 0.00 0.00 0.00 3.18
2204 5022 6.942576 ACCTTCATACTATTGCTTTGTGTTCT 59.057 34.615 0.00 0.00 0.00 3.01
2205 5023 8.100791 ACCTTCATACTATTGCTTTGTGTTCTA 58.899 33.333 0.00 0.00 0.00 2.10
2206 5024 8.391106 CCTTCATACTATTGCTTTGTGTTCTAC 58.609 37.037 0.00 0.00 0.00 2.59
2207 5025 8.840833 TTCATACTATTGCTTTGTGTTCTACA 57.159 30.769 0.00 0.00 37.56 2.74
2221 5039 7.905604 TGTGTTCTACAATGGAGAAACATAG 57.094 36.000 9.85 0.00 36.06 2.23
2222 5040 7.450074 TGTGTTCTACAATGGAGAAACATAGT 58.550 34.615 9.85 0.00 36.06 2.12
2223 5041 7.387673 TGTGTTCTACAATGGAGAAACATAGTG 59.612 37.037 9.85 0.00 36.06 2.74
2224 5042 6.371548 TGTTCTACAATGGAGAAACATAGTGC 59.628 38.462 9.85 0.00 34.78 4.40
2225 5043 5.428253 TCTACAATGGAGAAACATAGTGCC 58.572 41.667 0.00 0.00 0.00 5.01
2226 5044 4.307032 ACAATGGAGAAACATAGTGCCT 57.693 40.909 0.00 0.00 0.00 4.75
2227 5045 4.265073 ACAATGGAGAAACATAGTGCCTC 58.735 43.478 0.00 0.00 0.00 4.70
2228 5046 4.018960 ACAATGGAGAAACATAGTGCCTCT 60.019 41.667 0.00 0.00 0.00 3.69
2229 5047 4.851639 ATGGAGAAACATAGTGCCTCTT 57.148 40.909 0.00 0.00 0.00 2.85
2230 5048 4.640771 TGGAGAAACATAGTGCCTCTTT 57.359 40.909 0.00 0.00 0.00 2.52
2231 5049 4.985538 TGGAGAAACATAGTGCCTCTTTT 58.014 39.130 0.00 0.00 0.00 2.27
2232 5050 5.003804 TGGAGAAACATAGTGCCTCTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
2233 5051 4.396478 GGAGAAACATAGTGCCTCTTTTCC 59.604 45.833 0.00 0.00 0.00 3.13
2234 5052 4.985538 AGAAACATAGTGCCTCTTTTCCA 58.014 39.130 0.00 0.00 0.00 3.53
2235 5053 4.762251 AGAAACATAGTGCCTCTTTTCCAC 59.238 41.667 0.00 0.00 0.00 4.02
2236 5054 3.073274 ACATAGTGCCTCTTTTCCACC 57.927 47.619 0.00 0.00 0.00 4.61
2237 5055 2.290960 ACATAGTGCCTCTTTTCCACCC 60.291 50.000 0.00 0.00 0.00 4.61
2238 5056 1.440618 TAGTGCCTCTTTTCCACCCA 58.559 50.000 0.00 0.00 0.00 4.51
2239 5057 0.555769 AGTGCCTCTTTTCCACCCAA 59.444 50.000 0.00 0.00 0.00 4.12
2240 5058 0.673985 GTGCCTCTTTTCCACCCAAC 59.326 55.000 0.00 0.00 0.00 3.77
2241 5059 0.555769 TGCCTCTTTTCCACCCAACT 59.444 50.000 0.00 0.00 0.00 3.16
2242 5060 1.063266 TGCCTCTTTTCCACCCAACTT 60.063 47.619 0.00 0.00 0.00 2.66
2243 5061 2.039418 GCCTCTTTTCCACCCAACTTT 58.961 47.619 0.00 0.00 0.00 2.66
2244 5062 2.224042 GCCTCTTTTCCACCCAACTTTG 60.224 50.000 0.00 0.00 0.00 2.77
2245 5063 3.295973 CCTCTTTTCCACCCAACTTTGA 58.704 45.455 0.00 0.00 0.00 2.69
2246 5064 3.068165 CCTCTTTTCCACCCAACTTTGAC 59.932 47.826 0.00 0.00 0.00 3.18
2247 5065 3.699038 CTCTTTTCCACCCAACTTTGACA 59.301 43.478 0.00 0.00 0.00 3.58
2248 5066 3.699038 TCTTTTCCACCCAACTTTGACAG 59.301 43.478 0.00 0.00 0.00 3.51
2249 5067 3.374042 TTTCCACCCAACTTTGACAGA 57.626 42.857 0.00 0.00 0.00 3.41
2250 5068 3.593442 TTCCACCCAACTTTGACAGAT 57.407 42.857 0.00 0.00 0.00 2.90
2251 5069 4.715534 TTCCACCCAACTTTGACAGATA 57.284 40.909 0.00 0.00 0.00 1.98
2252 5070 4.927267 TCCACCCAACTTTGACAGATAT 57.073 40.909 0.00 0.00 0.00 1.63
2253 5071 4.843728 TCCACCCAACTTTGACAGATATC 58.156 43.478 0.00 0.00 0.00 1.63
2254 5072 4.536090 TCCACCCAACTTTGACAGATATCT 59.464 41.667 0.00 0.00 0.00 1.98
2255 5073 5.014123 TCCACCCAACTTTGACAGATATCTT 59.986 40.000 1.33 0.00 0.00 2.40
2256 5074 5.355350 CCACCCAACTTTGACAGATATCTTC 59.645 44.000 1.33 5.37 0.00 2.87
2257 5075 6.176183 CACCCAACTTTGACAGATATCTTCT 58.824 40.000 1.33 0.00 33.90 2.85
2258 5076 6.314896 CACCCAACTTTGACAGATATCTTCTC 59.685 42.308 1.33 1.44 29.93 2.87
2259 5077 5.819901 CCCAACTTTGACAGATATCTTCTCC 59.180 44.000 1.33 0.00 29.93 3.71
2260 5078 6.409704 CCAACTTTGACAGATATCTTCTCCA 58.590 40.000 1.33 0.00 29.93 3.86
2261 5079 7.052873 CCAACTTTGACAGATATCTTCTCCAT 58.947 38.462 1.33 0.00 29.93 3.41
2262 5080 7.226325 CCAACTTTGACAGATATCTTCTCCATC 59.774 40.741 1.33 0.00 29.93 3.51
2263 5081 6.825610 ACTTTGACAGATATCTTCTCCATCC 58.174 40.000 1.33 0.00 29.93 3.51
2264 5082 6.385176 ACTTTGACAGATATCTTCTCCATCCA 59.615 38.462 1.33 0.00 29.93 3.41
2265 5083 6.813293 TTGACAGATATCTTCTCCATCCAA 57.187 37.500 1.33 0.00 29.93 3.53
2266 5084 6.166984 TGACAGATATCTTCTCCATCCAAC 57.833 41.667 1.33 0.00 29.93 3.77
2267 5085 5.901853 TGACAGATATCTTCTCCATCCAACT 59.098 40.000 1.33 0.00 29.93 3.16
2268 5086 6.385176 TGACAGATATCTTCTCCATCCAACTT 59.615 38.462 1.33 0.00 29.93 2.66
2269 5087 6.590068 ACAGATATCTTCTCCATCCAACTTG 58.410 40.000 1.33 0.00 29.93 3.16
2270 5088 5.996513 CAGATATCTTCTCCATCCAACTTGG 59.003 44.000 1.33 0.74 33.13 3.61
2271 5089 6.183361 CAGATATCTTCTCCATCCAACTTGGA 60.183 42.308 13.08 13.08 41.41 3.53
2272 5090 7.474507 CAGATATCTTCTCCATCCAACTTGGAT 60.475 40.741 16.52 16.52 45.17 3.41
2308 5126 8.930846 ACTCTCCATCCATCCTAATTTAAATG 57.069 34.615 0.39 0.00 0.00 2.32
2309 5127 7.946776 ACTCTCCATCCATCCTAATTTAAATGG 59.053 37.037 0.39 0.00 40.05 3.16
2310 5128 6.721208 TCTCCATCCATCCTAATTTAAATGGC 59.279 38.462 0.39 0.00 38.83 4.40
2311 5129 6.380414 TCCATCCATCCTAATTTAAATGGCA 58.620 36.000 0.39 0.00 38.83 4.92
2312 5130 7.018150 TCCATCCATCCTAATTTAAATGGCAT 58.982 34.615 0.39 0.00 38.83 4.40
2313 5131 7.038870 TCCATCCATCCTAATTTAAATGGCATG 60.039 37.037 0.00 5.95 38.83 4.06
2314 5132 6.100404 TCCATCCTAATTTAAATGGCATGC 57.900 37.500 9.90 9.90 38.83 4.06
2315 5133 4.925054 CCATCCTAATTTAAATGGCATGCG 59.075 41.667 12.44 0.00 32.85 4.73
2316 5134 5.509501 CCATCCTAATTTAAATGGCATGCGT 60.510 40.000 12.44 0.00 32.85 5.24
2317 5135 4.930963 TCCTAATTTAAATGGCATGCGTG 58.069 39.130 12.44 0.09 0.00 5.34
2330 5148 1.847999 CATGCGTGCATTTCGAAATCC 59.152 47.619 20.31 12.73 33.90 3.01
2331 5149 1.164411 TGCGTGCATTTCGAAATCCT 58.836 45.000 20.31 0.00 0.00 3.24
2332 5150 2.351455 TGCGTGCATTTCGAAATCCTA 58.649 42.857 20.31 7.21 0.00 2.94
2333 5151 2.095213 TGCGTGCATTTCGAAATCCTAC 59.905 45.455 20.31 16.60 0.00 3.18
2334 5152 2.351726 GCGTGCATTTCGAAATCCTACT 59.648 45.455 20.31 0.00 0.00 2.57
2335 5153 3.181510 GCGTGCATTTCGAAATCCTACTT 60.182 43.478 20.31 0.00 0.00 2.24
2336 5154 4.578601 CGTGCATTTCGAAATCCTACTTC 58.421 43.478 20.31 6.55 0.00 3.01
2337 5155 4.092821 CGTGCATTTCGAAATCCTACTTCA 59.907 41.667 20.31 7.31 0.00 3.02
2338 5156 5.563842 GTGCATTTCGAAATCCTACTTCAG 58.436 41.667 20.31 7.45 0.00 3.02
2339 5157 4.094887 TGCATTTCGAAATCCTACTTCAGC 59.905 41.667 20.31 16.52 0.00 4.26
2340 5158 4.496507 GCATTTCGAAATCCTACTTCAGCC 60.497 45.833 20.31 0.44 0.00 4.85
2341 5159 3.973206 TTCGAAATCCTACTTCAGCCA 57.027 42.857 0.00 0.00 0.00 4.75
2342 5160 4.487714 TTCGAAATCCTACTTCAGCCAT 57.512 40.909 0.00 0.00 0.00 4.40
2343 5161 4.060038 TCGAAATCCTACTTCAGCCATC 57.940 45.455 0.00 0.00 0.00 3.51
2344 5162 3.450817 TCGAAATCCTACTTCAGCCATCA 59.549 43.478 0.00 0.00 0.00 3.07
2345 5163 4.081142 TCGAAATCCTACTTCAGCCATCAA 60.081 41.667 0.00 0.00 0.00 2.57
2346 5164 4.818546 CGAAATCCTACTTCAGCCATCAAT 59.181 41.667 0.00 0.00 0.00 2.57
2347 5165 5.297776 CGAAATCCTACTTCAGCCATCAATT 59.702 40.000 0.00 0.00 0.00 2.32
2348 5166 6.183360 CGAAATCCTACTTCAGCCATCAATTT 60.183 38.462 0.00 0.00 0.00 1.82
2349 5167 6.705863 AATCCTACTTCAGCCATCAATTTC 57.294 37.500 0.00 0.00 0.00 2.17
2350 5168 5.178096 TCCTACTTCAGCCATCAATTTCA 57.822 39.130 0.00 0.00 0.00 2.69
2351 5169 5.759059 TCCTACTTCAGCCATCAATTTCAT 58.241 37.500 0.00 0.00 0.00 2.57
2352 5170 5.824624 TCCTACTTCAGCCATCAATTTCATC 59.175 40.000 0.00 0.00 0.00 2.92
2353 5171 5.591472 CCTACTTCAGCCATCAATTTCATCA 59.409 40.000 0.00 0.00 0.00 3.07
2354 5172 5.578005 ACTTCAGCCATCAATTTCATCAG 57.422 39.130 0.00 0.00 0.00 2.90
2355 5173 4.142227 ACTTCAGCCATCAATTTCATCAGC 60.142 41.667 0.00 0.00 0.00 4.26
2356 5174 3.628008 TCAGCCATCAATTTCATCAGCT 58.372 40.909 0.00 0.00 0.00 4.24
2357 5175 4.784177 TCAGCCATCAATTTCATCAGCTA 58.216 39.130 0.00 0.00 0.00 3.32
2358 5176 5.195185 TCAGCCATCAATTTCATCAGCTAA 58.805 37.500 0.00 0.00 0.00 3.09
2359 5177 5.653330 TCAGCCATCAATTTCATCAGCTAAA 59.347 36.000 0.00 0.00 0.00 1.85
2360 5178 5.747197 CAGCCATCAATTTCATCAGCTAAAC 59.253 40.000 0.00 0.00 0.00 2.01
2361 5179 5.419788 AGCCATCAATTTCATCAGCTAAACA 59.580 36.000 0.00 0.00 0.00 2.83
2362 5180 6.097839 AGCCATCAATTTCATCAGCTAAACAT 59.902 34.615 0.00 0.00 0.00 2.71
2363 5181 6.200286 GCCATCAATTTCATCAGCTAAACATG 59.800 38.462 0.00 0.00 0.00 3.21
2364 5182 6.700081 CCATCAATTTCATCAGCTAAACATGG 59.300 38.462 0.00 0.00 0.00 3.66
2365 5183 6.211587 TCAATTTCATCAGCTAAACATGGG 57.788 37.500 0.00 0.00 0.00 4.00
2366 5184 5.951148 TCAATTTCATCAGCTAAACATGGGA 59.049 36.000 0.00 0.00 0.00 4.37
2367 5185 6.095860 TCAATTTCATCAGCTAAACATGGGAG 59.904 38.462 0.00 0.00 0.00 4.30
2368 5186 4.574674 TTCATCAGCTAAACATGGGAGT 57.425 40.909 0.00 0.00 0.00 3.85
2369 5187 5.692115 TTCATCAGCTAAACATGGGAGTA 57.308 39.130 0.00 0.00 0.00 2.59
2370 5188 5.894298 TCATCAGCTAAACATGGGAGTAT 57.106 39.130 0.00 0.00 0.00 2.12
2371 5189 5.614308 TCATCAGCTAAACATGGGAGTATG 58.386 41.667 0.00 0.00 0.00 2.39
2372 5190 5.130975 TCATCAGCTAAACATGGGAGTATGT 59.869 40.000 0.00 0.00 42.82 2.29
2382 5200 7.589958 AACATGGGAGTATGTTACAACAAAA 57.410 32.000 0.00 0.00 46.40 2.44
2383 5201 7.775053 ACATGGGAGTATGTTACAACAAAAT 57.225 32.000 0.00 0.00 43.03 1.82
2384 5202 8.871629 ACATGGGAGTATGTTACAACAAAATA 57.128 30.769 0.00 0.00 43.03 1.40
2385 5203 9.474313 ACATGGGAGTATGTTACAACAAAATAT 57.526 29.630 0.00 0.00 43.03 1.28
2386 5204 9.950680 CATGGGAGTATGTTACAACAAAATATC 57.049 33.333 0.00 0.00 43.03 1.63
2387 5205 9.693739 ATGGGAGTATGTTACAACAAAATATCA 57.306 29.630 0.00 0.00 43.03 2.15
2388 5206 8.952278 TGGGAGTATGTTACAACAAAATATCAC 58.048 33.333 0.00 0.00 43.03 3.06
2389 5207 8.403236 GGGAGTATGTTACAACAAAATATCACC 58.597 37.037 0.00 0.00 43.03 4.02
2390 5208 8.952278 GGAGTATGTTACAACAAAATATCACCA 58.048 33.333 0.00 0.00 43.03 4.17
2410 5228 9.617523 ATCACCAAATTCATTTTCAAGAAAAGT 57.382 25.926 12.81 1.66 42.72 2.66
2411 5229 9.447157 TCACCAAATTCATTTTCAAGAAAAGTT 57.553 25.926 12.81 4.06 42.72 2.66
2414 5232 9.720667 CCAAATTCATTTTCAAGAAAAGTTTCC 57.279 29.630 12.81 0.00 42.72 3.13
2419 5237 8.491331 TCATTTTCAAGAAAAGTTTCCAAAGG 57.509 30.769 12.81 0.00 42.72 3.11
2420 5238 8.100164 TCATTTTCAAGAAAAGTTTCCAAAGGT 58.900 29.630 12.81 0.00 42.72 3.50
2421 5239 9.377312 CATTTTCAAGAAAAGTTTCCAAAGGTA 57.623 29.630 12.81 0.00 42.72 3.08
2422 5240 8.766000 TTTTCAAGAAAAGTTTCCAAAGGTAC 57.234 30.769 3.98 0.00 37.92 3.34
2423 5241 7.469537 TTCAAGAAAAGTTTCCAAAGGTACA 57.530 32.000 0.00 0.00 37.92 2.90
2424 5242 7.469537 TCAAGAAAAGTTTCCAAAGGTACAA 57.530 32.000 0.00 0.00 37.92 2.41
2425 5243 8.073467 TCAAGAAAAGTTTCCAAAGGTACAAT 57.927 30.769 0.00 0.00 37.92 2.71
2426 5244 8.536175 TCAAGAAAAGTTTCCAAAGGTACAATT 58.464 29.630 0.00 0.00 37.92 2.32
2427 5245 8.603181 CAAGAAAAGTTTCCAAAGGTACAATTG 58.397 33.333 3.24 3.24 37.92 2.32
2428 5246 7.847096 AGAAAAGTTTCCAAAGGTACAATTGT 58.153 30.769 16.68 16.68 37.92 2.71
2429 5247 8.973182 AGAAAAGTTTCCAAAGGTACAATTGTA 58.027 29.630 14.35 14.35 37.92 2.41
2430 5248 9.758651 GAAAAGTTTCCAAAGGTACAATTGTAT 57.241 29.630 20.72 3.75 32.54 2.29
2431 5249 9.541143 AAAAGTTTCCAAAGGTACAATTGTATG 57.459 29.630 20.72 14.30 32.54 2.39
2432 5250 7.227049 AGTTTCCAAAGGTACAATTGTATGG 57.773 36.000 22.16 22.16 31.49 2.74
2433 5251 5.652994 TTCCAAAGGTACAATTGTATGGC 57.347 39.130 22.90 11.87 30.74 4.40
2434 5252 4.667573 TCCAAAGGTACAATTGTATGGCA 58.332 39.130 22.90 13.59 30.74 4.92
2435 5253 4.461081 TCCAAAGGTACAATTGTATGGCAC 59.539 41.667 22.90 13.38 30.74 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.042259 CACCACTGGATGCATGCGT 61.042 57.895 13.43 13.43 0.00 5.24
1 2 1.099295 ATCACCACTGGATGCATGCG 61.099 55.000 14.09 10.64 0.00 4.73
2 3 1.108776 AATCACCACTGGATGCATGC 58.891 50.000 11.82 11.82 0.00 4.06
3 4 3.429822 GGAAAATCACCACTGGATGCATG 60.430 47.826 2.46 0.00 0.00 4.06
4 5 2.762327 GGAAAATCACCACTGGATGCAT 59.238 45.455 0.00 0.00 0.00 3.96
5 6 2.170166 GGAAAATCACCACTGGATGCA 58.830 47.619 0.71 0.00 0.00 3.96
6 7 1.478105 GGGAAAATCACCACTGGATGC 59.522 52.381 0.71 0.00 0.00 3.91
7 8 2.102578 GGGGAAAATCACCACTGGATG 58.897 52.381 0.71 0.00 40.54 3.51
8 9 1.340991 CGGGGAAAATCACCACTGGAT 60.341 52.381 0.71 0.00 41.00 3.41
9 10 0.037590 CGGGGAAAATCACCACTGGA 59.962 55.000 0.71 0.00 41.00 3.86
10 11 0.251165 ACGGGGAAAATCACCACTGG 60.251 55.000 0.00 0.00 41.00 4.00
11 12 1.165270 GACGGGGAAAATCACCACTG 58.835 55.000 0.00 0.00 41.00 3.66
12 13 0.321298 CGACGGGGAAAATCACCACT 60.321 55.000 0.00 0.00 41.00 4.00
13 14 0.604511 ACGACGGGGAAAATCACCAC 60.605 55.000 0.00 0.00 41.00 4.16
14 15 0.108963 AACGACGGGGAAAATCACCA 59.891 50.000 0.00 0.00 41.00 4.17
15 16 0.800631 GAACGACGGGGAAAATCACC 59.199 55.000 0.00 0.00 36.31 4.02
16 17 1.463444 CTGAACGACGGGGAAAATCAC 59.537 52.381 0.00 0.00 0.00 3.06
17 18 1.071071 ACTGAACGACGGGGAAAATCA 59.929 47.619 0.00 0.00 0.00 2.57
18 19 1.463444 CACTGAACGACGGGGAAAATC 59.537 52.381 0.00 0.00 0.00 2.17
19 20 1.202722 ACACTGAACGACGGGGAAAAT 60.203 47.619 0.00 0.00 31.71 1.82
20 21 0.178533 ACACTGAACGACGGGGAAAA 59.821 50.000 0.00 0.00 31.71 2.29
21 22 0.531090 CACACTGAACGACGGGGAAA 60.531 55.000 0.00 0.00 31.71 3.13
22 23 1.068417 CACACTGAACGACGGGGAA 59.932 57.895 0.00 0.00 31.71 3.97
23 24 1.829096 TCACACTGAACGACGGGGA 60.829 57.895 0.00 0.00 31.71 4.81
24 25 1.663702 GTCACACTGAACGACGGGG 60.664 63.158 0.00 0.00 0.00 5.73
25 26 1.663702 GGTCACACTGAACGACGGG 60.664 63.158 0.00 0.00 0.00 5.28
26 27 0.939577 CAGGTCACACTGAACGACGG 60.940 60.000 0.00 0.00 39.55 4.79
27 28 0.939577 CCAGGTCACACTGAACGACG 60.940 60.000 0.00 0.00 39.55 5.12
28 29 0.387929 TCCAGGTCACACTGAACGAC 59.612 55.000 0.00 0.00 39.55 4.34
29 30 1.272490 GATCCAGGTCACACTGAACGA 59.728 52.381 0.00 0.00 39.55 3.85
30 31 1.000843 TGATCCAGGTCACACTGAACG 59.999 52.381 0.00 0.00 39.55 3.95
31 32 2.808543 GTTGATCCAGGTCACACTGAAC 59.191 50.000 0.00 0.00 40.97 3.18
32 33 2.437651 TGTTGATCCAGGTCACACTGAA 59.562 45.455 0.00 0.00 40.97 3.02
33 34 2.046292 TGTTGATCCAGGTCACACTGA 58.954 47.619 0.00 0.00 40.97 3.41
34 35 2.549064 TGTTGATCCAGGTCACACTG 57.451 50.000 0.00 0.00 38.21 3.66
35 36 3.795688 ATTGTTGATCCAGGTCACACT 57.204 42.857 0.00 0.00 0.00 3.55
36 37 4.278170 TCAAATTGTTGATCCAGGTCACAC 59.722 41.667 0.00 0.00 38.88 3.82
37 38 4.468713 TCAAATTGTTGATCCAGGTCACA 58.531 39.130 0.00 0.00 38.88 3.58
64 65 7.953005 TGGAGTATTATTGGCAGATGAAAAA 57.047 32.000 0.00 0.00 0.00 1.94
65 66 7.041167 CGATGGAGTATTATTGGCAGATGAAAA 60.041 37.037 0.00 0.00 0.00 2.29
66 67 6.427853 CGATGGAGTATTATTGGCAGATGAAA 59.572 38.462 0.00 0.00 0.00 2.69
67 68 5.934043 CGATGGAGTATTATTGGCAGATGAA 59.066 40.000 0.00 0.00 0.00 2.57
68 69 5.012046 ACGATGGAGTATTATTGGCAGATGA 59.988 40.000 0.00 0.00 0.00 2.92
69 70 5.121298 CACGATGGAGTATTATTGGCAGATG 59.879 44.000 0.00 0.00 0.00 2.90
70 71 5.240891 CACGATGGAGTATTATTGGCAGAT 58.759 41.667 0.00 0.00 0.00 2.90
71 72 4.503123 CCACGATGGAGTATTATTGGCAGA 60.503 45.833 0.00 0.00 40.96 4.26
72 73 3.748048 CCACGATGGAGTATTATTGGCAG 59.252 47.826 0.00 0.00 40.96 4.85
73 74 3.738982 CCACGATGGAGTATTATTGGCA 58.261 45.455 0.00 0.00 40.96 4.92
74 75 2.484264 GCCACGATGGAGTATTATTGGC 59.516 50.000 8.04 0.00 40.96 4.52
75 76 3.074412 GGCCACGATGGAGTATTATTGG 58.926 50.000 0.00 0.00 40.96 3.16
76 77 3.074412 GGGCCACGATGGAGTATTATTG 58.926 50.000 4.39 0.00 40.96 1.90
77 78 2.039879 GGGGCCACGATGGAGTATTATT 59.960 50.000 4.39 0.00 40.96 1.40
78 79 1.628846 GGGGCCACGATGGAGTATTAT 59.371 52.381 4.39 0.00 40.96 1.28
79 80 1.053424 GGGGCCACGATGGAGTATTA 58.947 55.000 4.39 0.00 40.96 0.98
83 84 4.741239 AGGGGGCCACGATGGAGT 62.741 66.667 4.39 0.00 40.96 3.85
85 86 2.938798 AAAGGGGGCCACGATGGA 60.939 61.111 4.39 0.00 40.96 3.41
108 109 2.969238 CGCTCTGCTATTGGCGGG 60.969 66.667 0.58 0.00 46.69 6.13
156 157 6.403333 TGCATGTCATTTACTACTCGTTTC 57.597 37.500 0.00 0.00 0.00 2.78
186 187 1.722464 CAGATGTTTTCGTCCGCGTAA 59.278 47.619 4.92 0.00 39.49 3.18
188 189 1.897398 GCAGATGTTTTCGTCCGCGT 61.897 55.000 4.92 0.00 39.49 6.01
197 198 5.413833 CACACTTGGATCTAGCAGATGTTTT 59.586 40.000 3.76 0.00 34.53 2.43
206 207 3.929610 GTCTGTTCACACTTGGATCTAGC 59.070 47.826 0.00 0.00 0.00 3.42
227 229 3.340034 TCTGTCAAACGAAAACAGTGGT 58.660 40.909 0.00 0.00 40.94 4.16
246 249 8.110860 AGTAAAATCCATTCGTTTCACATTCT 57.889 30.769 0.00 0.00 0.00 2.40
268 271 1.192146 AGAGGCGCACTTGGGAAGTA 61.192 55.000 10.83 0.00 40.46 2.24
311 320 4.335416 AGATTGGCGAGGAAAGATTTTGA 58.665 39.130 0.00 0.00 0.00 2.69
316 325 1.141858 GGGAGATTGGCGAGGAAAGAT 59.858 52.381 0.00 0.00 0.00 2.40
354 368 0.179081 GAGCGGGATTGGGAGTACAC 60.179 60.000 0.00 0.00 0.00 2.90
372 386 0.322816 GTTGCTCTGCCATTCTGGGA 60.323 55.000 0.00 0.00 38.19 4.37
373 394 1.651240 CGTTGCTCTGCCATTCTGGG 61.651 60.000 0.00 0.00 38.19 4.45
391 412 0.463295 ATGGCCACAGAGATCTTGCG 60.463 55.000 8.16 0.00 0.00 4.85
412 433 6.060788 GCTCAAATGACCTTTCCTCAGATAT 58.939 40.000 0.00 0.00 0.00 1.63
434 473 6.609212 TCTTGAGTATTCATCTACCTTGAGCT 59.391 38.462 0.00 0.00 32.27 4.09
470 512 1.153823 CCGTCGCCGATCTTGAGTT 60.154 57.895 0.00 0.00 35.63 3.01
486 528 1.265454 AAGGGGTAGAAGTCAGGCCG 61.265 60.000 0.00 0.00 0.00 6.13
544 3033 3.334751 CGCGCAGACACCGTTTGA 61.335 61.111 8.75 0.00 0.00 2.69
581 3073 6.092807 GGCAGATTCAAGACGTAGAAAAAGAT 59.907 38.462 0.00 0.00 0.00 2.40
698 3196 4.103311 AGGCTGAACTTTTAGAGAAGGTGT 59.897 41.667 0.00 0.00 0.00 4.16
732 3239 0.249405 CAGCCCTCTTGATCTCGAGC 60.249 60.000 7.81 0.00 0.00 5.03
757 3270 1.025812 CTCAGGTACGGCGATCTCTT 58.974 55.000 16.62 0.00 0.00 2.85
784 3297 5.426509 TGAGATCACACCTGATGGTAAGATT 59.573 40.000 0.00 0.00 46.60 2.40
785 3298 4.964897 TGAGATCACACCTGATGGTAAGAT 59.035 41.667 0.00 0.00 46.60 2.40
813 3326 7.588497 TTCTTCGATCTTGATCTCCTTCATA 57.412 36.000 8.70 0.00 0.00 2.15
830 3358 2.028385 GGAGCTACCCTTGTTTCTTCGA 60.028 50.000 0.00 0.00 0.00 3.71
852 3380 0.391130 GATGTTGGTGCAGGTCGCTA 60.391 55.000 0.00 0.00 43.06 4.26
1227 3763 2.612721 GGTTGCCACCATGTTTGAATCC 60.613 50.000 1.17 0.00 43.61 3.01
1523 4226 3.691118 TGGAGAAGTAGCATGACAATTGC 59.309 43.478 5.05 0.00 40.45 3.56
1702 4416 3.793775 TTTCCGCAAGCGTCGTCCA 62.794 57.895 13.80 0.00 37.81 4.02
1774 4490 8.233190 GTGGAGATTGAATGAAAACTAGAACTG 58.767 37.037 0.00 0.00 0.00 3.16
1802 4518 9.985730 ATTCAAGCTTTTCTATCAAACATTTCA 57.014 25.926 0.00 0.00 0.00 2.69
2008 4826 1.150827 GCACGGGCGTTTAACTAGTT 58.849 50.000 13.68 13.68 0.00 2.24
2009 4827 2.831597 GCACGGGCGTTTAACTAGT 58.168 52.632 0.00 0.00 0.00 2.57
2047 4865 8.928733 GAGCAATGTTGTGAATTACATTGATTT 58.071 29.630 25.54 14.86 45.33 2.17
2048 4866 8.089597 TGAGCAATGTTGTGAATTACATTGATT 58.910 29.630 25.54 16.60 45.33 2.57
2052 4870 7.821595 CATGAGCAATGTTGTGAATTACATT 57.178 32.000 0.00 0.00 39.48 2.71
2066 4884 6.419710 CACATTTATAAGCCACATGAGCAATG 59.580 38.462 13.56 14.23 42.48 2.82
2067 4885 6.097270 ACACATTTATAAGCCACATGAGCAAT 59.903 34.615 13.56 9.33 0.00 3.56
2068 4886 5.418524 ACACATTTATAAGCCACATGAGCAA 59.581 36.000 13.56 3.45 0.00 3.91
2069 4887 4.949238 ACACATTTATAAGCCACATGAGCA 59.051 37.500 13.56 0.00 0.00 4.26
2070 4888 5.505173 ACACATTTATAAGCCACATGAGC 57.495 39.130 0.00 1.38 0.00 4.26
2071 4889 5.745294 GCAACACATTTATAAGCCACATGAG 59.255 40.000 0.00 0.00 0.00 2.90
2072 4890 5.394005 GGCAACACATTTATAAGCCACATGA 60.394 40.000 0.00 0.00 40.29 3.07
2073 4891 4.805192 GGCAACACATTTATAAGCCACATG 59.195 41.667 5.11 0.00 40.29 3.21
2074 4892 4.465660 TGGCAACACATTTATAAGCCACAT 59.534 37.500 7.95 0.00 44.89 3.21
2075 4893 3.829026 TGGCAACACATTTATAAGCCACA 59.171 39.130 7.95 0.00 44.89 4.17
2076 4894 4.448537 TGGCAACACATTTATAAGCCAC 57.551 40.909 7.95 0.00 44.89 5.01
2091 4909 7.088589 AGTACAAGATGATATTTGTGGCAAC 57.911 36.000 0.00 0.00 37.98 4.17
2092 4910 7.392953 TCAAGTACAAGATGATATTTGTGGCAA 59.607 33.333 0.00 0.00 37.98 4.52
2093 4911 6.883756 TCAAGTACAAGATGATATTTGTGGCA 59.116 34.615 0.00 0.00 37.98 4.92
2094 4912 7.320443 TCAAGTACAAGATGATATTTGTGGC 57.680 36.000 0.00 0.36 37.98 5.01
2115 4933 9.979578 GCCACATGGATTTTGTTATATTATCAA 57.020 29.630 0.87 0.00 37.39 2.57
2116 4934 9.365906 AGCCACATGGATTTTGTTATATTATCA 57.634 29.630 0.87 0.00 37.39 2.15
2117 4935 9.846248 GAGCCACATGGATTTTGTTATATTATC 57.154 33.333 0.87 0.00 37.39 1.75
2118 4936 8.514594 CGAGCCACATGGATTTTGTTATATTAT 58.485 33.333 0.87 0.00 37.39 1.28
2119 4937 7.500892 ACGAGCCACATGGATTTTGTTATATTA 59.499 33.333 0.87 0.00 37.39 0.98
2120 4938 6.321181 ACGAGCCACATGGATTTTGTTATATT 59.679 34.615 0.87 0.00 37.39 1.28
2121 4939 5.827797 ACGAGCCACATGGATTTTGTTATAT 59.172 36.000 0.87 0.00 37.39 0.86
2122 4940 5.189928 ACGAGCCACATGGATTTTGTTATA 58.810 37.500 0.87 0.00 37.39 0.98
2123 4941 4.016444 ACGAGCCACATGGATTTTGTTAT 58.984 39.130 0.87 0.00 37.39 1.89
2124 4942 3.417101 ACGAGCCACATGGATTTTGTTA 58.583 40.909 0.87 0.00 37.39 2.41
2125 4943 2.238521 ACGAGCCACATGGATTTTGTT 58.761 42.857 0.87 0.00 37.39 2.83
2126 4944 1.909700 ACGAGCCACATGGATTTTGT 58.090 45.000 0.87 0.00 37.39 2.83
2127 4945 4.096231 TGAATACGAGCCACATGGATTTTG 59.904 41.667 0.87 0.00 37.39 2.44
2128 4946 4.269183 TGAATACGAGCCACATGGATTTT 58.731 39.130 0.87 0.00 37.39 1.82
2129 4947 3.884895 TGAATACGAGCCACATGGATTT 58.115 40.909 0.87 0.00 37.39 2.17
2130 4948 3.558931 TGAATACGAGCCACATGGATT 57.441 42.857 0.87 0.00 37.39 3.01
2131 4949 3.558931 TTGAATACGAGCCACATGGAT 57.441 42.857 0.87 0.00 37.39 3.41
2132 4950 3.006940 GTTTGAATACGAGCCACATGGA 58.993 45.455 0.87 0.00 37.39 3.41
2133 4951 2.097466 GGTTTGAATACGAGCCACATGG 59.903 50.000 0.00 0.00 38.53 3.66
2134 4952 2.746904 TGGTTTGAATACGAGCCACATG 59.253 45.455 0.00 0.00 36.17 3.21
2135 4953 3.066291 TGGTTTGAATACGAGCCACAT 57.934 42.857 0.00 0.00 36.17 3.21
2136 4954 2.552599 TGGTTTGAATACGAGCCACA 57.447 45.000 0.00 0.00 36.17 4.17
2138 4956 1.072489 TGGTGGTTTGAATACGAGCCA 59.928 47.619 0.00 0.00 38.23 4.75
2139 4957 1.816074 TGGTGGTTTGAATACGAGCC 58.184 50.000 0.00 0.00 0.00 4.70
2140 4958 3.006940 TCATGGTGGTTTGAATACGAGC 58.993 45.455 0.00 0.00 0.00 5.03
2141 4959 4.253685 AGTCATGGTGGTTTGAATACGAG 58.746 43.478 0.00 0.00 0.00 4.18
2142 4960 4.250464 GAGTCATGGTGGTTTGAATACGA 58.750 43.478 0.00 0.00 0.00 3.43
2143 4961 4.000325 TGAGTCATGGTGGTTTGAATACG 59.000 43.478 0.00 0.00 0.00 3.06
2144 4962 5.473504 AGTTGAGTCATGGTGGTTTGAATAC 59.526 40.000 0.00 0.00 0.00 1.89
2145 4963 5.630121 AGTTGAGTCATGGTGGTTTGAATA 58.370 37.500 0.00 0.00 0.00 1.75
2146 4964 4.473444 AGTTGAGTCATGGTGGTTTGAAT 58.527 39.130 0.00 0.00 0.00 2.57
2147 4965 3.897239 AGTTGAGTCATGGTGGTTTGAA 58.103 40.909 0.00 0.00 0.00 2.69
2148 4966 3.576078 AGTTGAGTCATGGTGGTTTGA 57.424 42.857 0.00 0.00 0.00 2.69
2149 4967 4.319477 CGTAAGTTGAGTCATGGTGGTTTG 60.319 45.833 0.00 0.00 0.00 2.93
2150 4968 3.813166 CGTAAGTTGAGTCATGGTGGTTT 59.187 43.478 0.00 0.00 0.00 3.27
2151 4969 3.070446 TCGTAAGTTGAGTCATGGTGGTT 59.930 43.478 0.00 0.00 39.48 3.67
2152 4970 2.631062 TCGTAAGTTGAGTCATGGTGGT 59.369 45.455 0.00 0.00 39.48 4.16
2153 4971 3.313012 TCGTAAGTTGAGTCATGGTGG 57.687 47.619 0.00 0.00 39.48 4.61
2154 4972 4.307432 ACTTCGTAAGTTGAGTCATGGTG 58.693 43.478 0.00 0.00 39.04 4.17
2155 4973 4.281182 AGACTTCGTAAGTTGAGTCATGGT 59.719 41.667 0.00 0.00 43.03 3.55
2156 4974 4.810790 AGACTTCGTAAGTTGAGTCATGG 58.189 43.478 0.00 0.00 43.03 3.66
2157 4975 5.800941 GGTAGACTTCGTAAGTTGAGTCATG 59.199 44.000 0.00 0.00 43.03 3.07
2158 4976 5.711036 AGGTAGACTTCGTAAGTTGAGTCAT 59.289 40.000 0.00 0.00 43.03 3.06
2159 4977 5.068636 AGGTAGACTTCGTAAGTTGAGTCA 58.931 41.667 5.31 0.00 43.03 3.41
2160 4978 5.625921 AGGTAGACTTCGTAAGTTGAGTC 57.374 43.478 2.51 0.00 43.03 3.36
2161 4979 6.011476 GAAGGTAGACTTCGTAAGTTGAGT 57.989 41.667 2.51 0.00 45.51 3.41
2173 4991 8.322091 ACAAAGCAATAGTATGAAGGTAGACTT 58.678 33.333 0.00 0.00 43.65 3.01
2174 4992 7.766278 CACAAAGCAATAGTATGAAGGTAGACT 59.234 37.037 0.00 0.00 0.00 3.24
2175 4993 7.549488 ACACAAAGCAATAGTATGAAGGTAGAC 59.451 37.037 0.00 0.00 0.00 2.59
2176 4994 7.620880 ACACAAAGCAATAGTATGAAGGTAGA 58.379 34.615 0.00 0.00 0.00 2.59
2177 4995 7.849804 ACACAAAGCAATAGTATGAAGGTAG 57.150 36.000 0.00 0.00 0.00 3.18
2178 4996 8.100791 AGAACACAAAGCAATAGTATGAAGGTA 58.899 33.333 0.00 0.00 0.00 3.08
2179 4997 6.942576 AGAACACAAAGCAATAGTATGAAGGT 59.057 34.615 0.00 0.00 0.00 3.50
2180 4998 7.383102 AGAACACAAAGCAATAGTATGAAGG 57.617 36.000 0.00 0.00 0.00 3.46
2181 4999 8.935844 TGTAGAACACAAAGCAATAGTATGAAG 58.064 33.333 0.00 0.00 32.95 3.02
2182 5000 8.840833 TGTAGAACACAAAGCAATAGTATGAA 57.159 30.769 0.00 0.00 32.95 2.57
2183 5001 8.840833 TTGTAGAACACAAAGCAATAGTATGA 57.159 30.769 0.00 0.00 44.20 2.15
2197 5015 7.387673 CACTATGTTTCTCCATTGTAGAACACA 59.612 37.037 8.36 8.36 32.81 3.72
2198 5016 7.624344 GCACTATGTTTCTCCATTGTAGAACAC 60.624 40.741 0.00 0.00 32.81 3.32
2199 5017 6.371548 GCACTATGTTTCTCCATTGTAGAACA 59.628 38.462 0.00 0.00 32.81 3.18
2200 5018 6.183360 GGCACTATGTTTCTCCATTGTAGAAC 60.183 42.308 0.00 0.00 32.81 3.01
2201 5019 5.880332 GGCACTATGTTTCTCCATTGTAGAA 59.120 40.000 0.00 0.00 31.17 2.10
2202 5020 5.189736 AGGCACTATGTTTCTCCATTGTAGA 59.810 40.000 0.00 0.00 36.02 2.59
2203 5021 5.431765 AGGCACTATGTTTCTCCATTGTAG 58.568 41.667 0.00 0.00 36.02 2.74
2204 5022 5.189736 AGAGGCACTATGTTTCTCCATTGTA 59.810 40.000 0.00 0.00 41.55 2.41
2205 5023 4.018960 AGAGGCACTATGTTTCTCCATTGT 60.019 41.667 0.00 0.00 41.55 2.71
2206 5024 4.521146 AGAGGCACTATGTTTCTCCATTG 58.479 43.478 0.00 0.00 41.55 2.82
2207 5025 4.851639 AGAGGCACTATGTTTCTCCATT 57.148 40.909 0.00 0.00 41.55 3.16
2208 5026 4.851639 AAGAGGCACTATGTTTCTCCAT 57.148 40.909 0.00 0.00 41.55 3.41
2209 5027 4.640771 AAAGAGGCACTATGTTTCTCCA 57.359 40.909 0.00 0.00 41.55 3.86
2210 5028 4.396478 GGAAAAGAGGCACTATGTTTCTCC 59.604 45.833 7.28 0.00 41.55 3.71
2211 5029 5.003804 TGGAAAAGAGGCACTATGTTTCTC 58.996 41.667 7.28 0.00 41.55 2.87
2212 5030 4.762251 GTGGAAAAGAGGCACTATGTTTCT 59.238 41.667 7.28 0.00 41.55 2.52
2213 5031 4.082733 GGTGGAAAAGAGGCACTATGTTTC 60.083 45.833 0.00 0.64 41.55 2.78
2214 5032 3.826729 GGTGGAAAAGAGGCACTATGTTT 59.173 43.478 0.00 0.00 41.55 2.83
2215 5033 3.421844 GGTGGAAAAGAGGCACTATGTT 58.578 45.455 0.00 0.00 41.55 2.71
2216 5034 2.290960 GGGTGGAAAAGAGGCACTATGT 60.291 50.000 0.00 0.00 41.55 2.29
2217 5035 2.290896 TGGGTGGAAAAGAGGCACTATG 60.291 50.000 0.00 0.00 41.55 2.23
2218 5036 1.992557 TGGGTGGAAAAGAGGCACTAT 59.007 47.619 0.00 0.00 41.55 2.12
2219 5037 1.440618 TGGGTGGAAAAGAGGCACTA 58.559 50.000 0.00 0.00 41.55 2.74
2221 5039 0.673985 GTTGGGTGGAAAAGAGGCAC 59.326 55.000 0.00 0.00 0.00 5.01
2222 5040 0.555769 AGTTGGGTGGAAAAGAGGCA 59.444 50.000 0.00 0.00 0.00 4.75
2223 5041 1.704641 AAGTTGGGTGGAAAAGAGGC 58.295 50.000 0.00 0.00 0.00 4.70
2224 5042 3.068165 GTCAAAGTTGGGTGGAAAAGAGG 59.932 47.826 0.00 0.00 0.00 3.69
2225 5043 3.699038 TGTCAAAGTTGGGTGGAAAAGAG 59.301 43.478 0.00 0.00 0.00 2.85
2226 5044 3.699038 CTGTCAAAGTTGGGTGGAAAAGA 59.301 43.478 0.00 0.00 0.00 2.52
2227 5045 3.699038 TCTGTCAAAGTTGGGTGGAAAAG 59.301 43.478 0.00 0.00 0.00 2.27
2228 5046 3.702792 TCTGTCAAAGTTGGGTGGAAAA 58.297 40.909 0.00 0.00 0.00 2.29
2229 5047 3.374042 TCTGTCAAAGTTGGGTGGAAA 57.626 42.857 0.00 0.00 0.00 3.13
2230 5048 3.593442 ATCTGTCAAAGTTGGGTGGAA 57.407 42.857 0.00 0.00 0.00 3.53
2231 5049 4.536090 AGATATCTGTCAAAGTTGGGTGGA 59.464 41.667 3.89 0.00 0.00 4.02
2232 5050 4.848357 AGATATCTGTCAAAGTTGGGTGG 58.152 43.478 3.89 0.00 0.00 4.61
2233 5051 6.176183 AGAAGATATCTGTCAAAGTTGGGTG 58.824 40.000 5.86 0.00 36.88 4.61
2234 5052 6.380079 AGAAGATATCTGTCAAAGTTGGGT 57.620 37.500 5.86 0.00 36.88 4.51
2235 5053 5.819901 GGAGAAGATATCTGTCAAAGTTGGG 59.180 44.000 5.86 0.00 38.96 4.12
2236 5054 6.409704 TGGAGAAGATATCTGTCAAAGTTGG 58.590 40.000 5.86 0.00 38.96 3.77
2237 5055 7.226325 GGATGGAGAAGATATCTGTCAAAGTTG 59.774 40.741 5.86 0.00 38.96 3.16
2238 5056 7.092712 TGGATGGAGAAGATATCTGTCAAAGTT 60.093 37.037 5.86 0.00 38.96 2.66
2239 5057 6.385176 TGGATGGAGAAGATATCTGTCAAAGT 59.615 38.462 5.86 0.00 38.96 2.66
2240 5058 6.824553 TGGATGGAGAAGATATCTGTCAAAG 58.175 40.000 5.86 0.00 38.96 2.77
2241 5059 6.813293 TGGATGGAGAAGATATCTGTCAAA 57.187 37.500 5.86 0.02 38.96 2.69
2242 5060 6.385176 AGTTGGATGGAGAAGATATCTGTCAA 59.615 38.462 5.86 0.36 38.96 3.18
2243 5061 5.901853 AGTTGGATGGAGAAGATATCTGTCA 59.098 40.000 5.86 3.30 38.96 3.58
2244 5062 6.418057 AGTTGGATGGAGAAGATATCTGTC 57.582 41.667 5.86 6.41 38.96 3.51
2245 5063 6.409005 CCAAGTTGGATGGAGAAGATATCTGT 60.409 42.308 17.60 0.00 40.96 3.41
2246 5064 5.996513 CCAAGTTGGATGGAGAAGATATCTG 59.003 44.000 17.60 0.00 40.96 2.90
2247 5065 5.907662 TCCAAGTTGGATGGAGAAGATATCT 59.092 40.000 21.05 0.00 42.67 1.98
2248 5066 6.179906 TCCAAGTTGGATGGAGAAGATATC 57.820 41.667 21.05 0.00 42.67 1.63
2283 5101 7.946776 CCATTTAAATTAGGATGGATGGAGAGT 59.053 37.037 10.23 0.00 41.20 3.24
2284 5102 7.094032 GCCATTTAAATTAGGATGGATGGAGAG 60.094 40.741 16.61 0.00 41.20 3.20
2285 5103 6.721208 GCCATTTAAATTAGGATGGATGGAGA 59.279 38.462 16.61 0.00 41.20 3.71
2286 5104 6.494491 TGCCATTTAAATTAGGATGGATGGAG 59.506 38.462 16.61 0.00 41.20 3.86
2287 5105 6.380414 TGCCATTTAAATTAGGATGGATGGA 58.620 36.000 16.61 1.14 41.20 3.41
2288 5106 6.669125 TGCCATTTAAATTAGGATGGATGG 57.331 37.500 16.61 1.62 41.20 3.51
2289 5107 6.592607 GCATGCCATTTAAATTAGGATGGATG 59.407 38.462 21.33 15.07 41.20 3.51
2290 5108 6.572898 CGCATGCCATTTAAATTAGGATGGAT 60.573 38.462 21.33 6.85 41.20 3.41
2291 5109 5.278907 CGCATGCCATTTAAATTAGGATGGA 60.279 40.000 21.33 5.37 41.20 3.41
2292 5110 4.925054 CGCATGCCATTTAAATTAGGATGG 59.075 41.667 21.33 12.72 41.53 3.51
2293 5111 5.403166 CACGCATGCCATTTAAATTAGGATG 59.597 40.000 13.15 18.15 0.00 3.51
2294 5112 5.531634 CACGCATGCCATTTAAATTAGGAT 58.468 37.500 13.15 3.17 0.00 3.24
2295 5113 4.736168 GCACGCATGCCATTTAAATTAGGA 60.736 41.667 13.15 1.04 46.97 2.94
2296 5114 3.490526 GCACGCATGCCATTTAAATTAGG 59.509 43.478 13.15 0.00 46.97 2.69
2297 5115 4.697300 GCACGCATGCCATTTAAATTAG 57.303 40.909 13.15 0.00 46.97 1.73
2310 5128 1.847999 GGATTTCGAAATGCACGCATG 59.152 47.619 30.31 0.00 36.81 4.06
2311 5129 1.745087 AGGATTTCGAAATGCACGCAT 59.255 42.857 34.37 17.35 38.95 4.73
2312 5130 1.164411 AGGATTTCGAAATGCACGCA 58.836 45.000 34.37 4.83 38.95 5.24
2313 5131 2.351726 AGTAGGATTTCGAAATGCACGC 59.648 45.455 34.37 24.92 38.95 5.34
2314 5132 4.092821 TGAAGTAGGATTTCGAAATGCACG 59.907 41.667 34.37 0.00 38.95 5.34
2315 5133 5.545658 TGAAGTAGGATTTCGAAATGCAC 57.454 39.130 34.37 28.52 38.95 4.57
2316 5134 4.094887 GCTGAAGTAGGATTTCGAAATGCA 59.905 41.667 34.37 21.73 38.95 3.96
2317 5135 4.496507 GGCTGAAGTAGGATTTCGAAATGC 60.497 45.833 28.77 28.77 37.04 3.56
2318 5136 4.635765 TGGCTGAAGTAGGATTTCGAAATG 59.364 41.667 27.27 10.83 0.00 2.32
2319 5137 4.843728 TGGCTGAAGTAGGATTTCGAAAT 58.156 39.130 22.93 22.93 0.00 2.17
2320 5138 4.280436 TGGCTGAAGTAGGATTTCGAAA 57.720 40.909 13.91 13.91 0.00 3.46
2321 5139 3.973206 TGGCTGAAGTAGGATTTCGAA 57.027 42.857 0.00 0.00 0.00 3.71
2322 5140 3.450817 TGATGGCTGAAGTAGGATTTCGA 59.549 43.478 0.00 0.00 0.00 3.71
2323 5141 3.797039 TGATGGCTGAAGTAGGATTTCG 58.203 45.455 0.00 0.00 0.00 3.46
2324 5142 6.705863 AATTGATGGCTGAAGTAGGATTTC 57.294 37.500 0.00 0.00 0.00 2.17
2325 5143 6.664816 TGAAATTGATGGCTGAAGTAGGATTT 59.335 34.615 0.00 0.00 0.00 2.17
2326 5144 6.189859 TGAAATTGATGGCTGAAGTAGGATT 58.810 36.000 0.00 0.00 0.00 3.01
2327 5145 5.759059 TGAAATTGATGGCTGAAGTAGGAT 58.241 37.500 0.00 0.00 0.00 3.24
2328 5146 5.178096 TGAAATTGATGGCTGAAGTAGGA 57.822 39.130 0.00 0.00 0.00 2.94
2329 5147 5.591472 TGATGAAATTGATGGCTGAAGTAGG 59.409 40.000 0.00 0.00 0.00 3.18
2330 5148 6.688637 TGATGAAATTGATGGCTGAAGTAG 57.311 37.500 0.00 0.00 0.00 2.57
2331 5149 5.066893 GCTGATGAAATTGATGGCTGAAGTA 59.933 40.000 0.00 0.00 0.00 2.24
2332 5150 4.142227 GCTGATGAAATTGATGGCTGAAGT 60.142 41.667 0.00 0.00 0.00 3.01
2333 5151 4.098044 AGCTGATGAAATTGATGGCTGAAG 59.902 41.667 0.00 0.00 0.00 3.02
2334 5152 4.021229 AGCTGATGAAATTGATGGCTGAA 58.979 39.130 0.00 0.00 0.00 3.02
2335 5153 3.628008 AGCTGATGAAATTGATGGCTGA 58.372 40.909 0.00 0.00 0.00 4.26
2336 5154 5.509716 TTAGCTGATGAAATTGATGGCTG 57.490 39.130 0.00 0.00 0.00 4.85
2337 5155 5.419788 TGTTTAGCTGATGAAATTGATGGCT 59.580 36.000 0.00 0.00 0.00 4.75
2338 5156 5.653507 TGTTTAGCTGATGAAATTGATGGC 58.346 37.500 0.00 0.00 0.00 4.40
2339 5157 6.700081 CCATGTTTAGCTGATGAAATTGATGG 59.300 38.462 0.00 0.00 0.00 3.51
2340 5158 6.700081 CCCATGTTTAGCTGATGAAATTGATG 59.300 38.462 0.00 0.00 0.00 3.07
2341 5159 6.608405 TCCCATGTTTAGCTGATGAAATTGAT 59.392 34.615 0.00 0.00 0.00 2.57
2342 5160 5.951148 TCCCATGTTTAGCTGATGAAATTGA 59.049 36.000 0.00 0.00 0.00 2.57
2343 5161 6.127535 ACTCCCATGTTTAGCTGATGAAATTG 60.128 38.462 0.00 0.00 0.00 2.32
2344 5162 5.954150 ACTCCCATGTTTAGCTGATGAAATT 59.046 36.000 0.00 0.00 0.00 1.82
2345 5163 5.513233 ACTCCCATGTTTAGCTGATGAAAT 58.487 37.500 0.00 0.00 0.00 2.17
2346 5164 4.922206 ACTCCCATGTTTAGCTGATGAAA 58.078 39.130 0.00 0.00 0.00 2.69
2347 5165 4.574674 ACTCCCATGTTTAGCTGATGAA 57.425 40.909 0.00 0.00 0.00 2.57
2348 5166 5.130975 ACATACTCCCATGTTTAGCTGATGA 59.869 40.000 0.00 0.00 35.60 2.92
2349 5167 5.371526 ACATACTCCCATGTTTAGCTGATG 58.628 41.667 0.00 0.00 35.60 3.07
2350 5168 5.636903 ACATACTCCCATGTTTAGCTGAT 57.363 39.130 0.00 0.00 35.60 2.90
2351 5169 5.435686 AACATACTCCCATGTTTAGCTGA 57.564 39.130 0.00 0.00 44.75 4.26
2352 5170 6.112734 TGTAACATACTCCCATGTTTAGCTG 58.887 40.000 6.77 0.00 44.75 4.24
2353 5171 6.308015 TGTAACATACTCCCATGTTTAGCT 57.692 37.500 6.77 0.00 44.75 3.32
2354 5172 6.373216 TGTTGTAACATACTCCCATGTTTAGC 59.627 38.462 6.77 1.45 44.75 3.09
2355 5173 7.915293 TGTTGTAACATACTCCCATGTTTAG 57.085 36.000 6.77 0.00 44.75 1.85
2356 5174 8.693120 TTTGTTGTAACATACTCCCATGTTTA 57.307 30.769 6.77 0.00 44.75 2.01
2357 5175 7.589958 TTTGTTGTAACATACTCCCATGTTT 57.410 32.000 6.77 0.00 44.75 2.83
2359 5177 7.775053 ATTTTGTTGTAACATACTCCCATGT 57.225 32.000 0.00 0.00 40.90 3.21
2360 5178 9.950680 GATATTTTGTTGTAACATACTCCCATG 57.049 33.333 0.00 0.00 38.95 3.66
2361 5179 9.693739 TGATATTTTGTTGTAACATACTCCCAT 57.306 29.630 0.00 0.00 38.95 4.00
2362 5180 8.952278 GTGATATTTTGTTGTAACATACTCCCA 58.048 33.333 0.00 0.00 38.95 4.37
2363 5181 8.403236 GGTGATATTTTGTTGTAACATACTCCC 58.597 37.037 0.00 0.00 38.95 4.30
2364 5182 8.952278 TGGTGATATTTTGTTGTAACATACTCC 58.048 33.333 0.00 0.00 38.95 3.85
2384 5202 9.617523 ACTTTTCTTGAAAATGAATTTGGTGAT 57.382 25.926 8.69 0.00 0.00 3.06
2385 5203 9.447157 AACTTTTCTTGAAAATGAATTTGGTGA 57.553 25.926 8.69 0.00 0.00 4.02
2388 5206 9.720667 GGAAACTTTTCTTGAAAATGAATTTGG 57.279 29.630 8.69 0.00 37.35 3.28
2393 5211 8.945057 CCTTTGGAAACTTTTCTTGAAAATGAA 58.055 29.630 8.69 0.00 37.35 2.57
2394 5212 8.100164 ACCTTTGGAAACTTTTCTTGAAAATGA 58.900 29.630 8.69 0.00 37.35 2.57
2395 5213 8.267620 ACCTTTGGAAACTTTTCTTGAAAATG 57.732 30.769 8.69 6.43 37.35 2.32
2396 5214 9.378551 GTACCTTTGGAAACTTTTCTTGAAAAT 57.621 29.630 8.69 0.00 37.35 1.82
2397 5215 8.368668 TGTACCTTTGGAAACTTTTCTTGAAAA 58.631 29.630 8.07 8.07 37.35 2.29
2398 5216 7.897864 TGTACCTTTGGAAACTTTTCTTGAAA 58.102 30.769 1.88 0.00 37.35 2.69
2399 5217 7.469537 TGTACCTTTGGAAACTTTTCTTGAA 57.530 32.000 1.88 0.00 37.35 2.69
2400 5218 7.469537 TTGTACCTTTGGAAACTTTTCTTGA 57.530 32.000 1.88 0.00 37.35 3.02
2401 5219 8.603181 CAATTGTACCTTTGGAAACTTTTCTTG 58.397 33.333 0.00 0.00 37.35 3.02
2402 5220 8.318412 ACAATTGTACCTTTGGAAACTTTTCTT 58.682 29.630 9.97 0.00 37.35 2.52
2403 5221 7.847096 ACAATTGTACCTTTGGAAACTTTTCT 58.153 30.769 9.97 0.00 37.35 2.52
2404 5222 9.758651 ATACAATTGTACCTTTGGAAACTTTTC 57.241 29.630 20.26 0.00 33.37 2.29
2405 5223 9.541143 CATACAATTGTACCTTTGGAAACTTTT 57.459 29.630 20.26 0.00 32.72 2.27
2406 5224 8.147704 CCATACAATTGTACCTTTGGAAACTTT 58.852 33.333 23.15 2.33 31.74 2.66
2407 5225 7.666623 CCATACAATTGTACCTTTGGAAACTT 58.333 34.615 23.15 2.71 31.74 2.66
2408 5226 6.295067 GCCATACAATTGTACCTTTGGAAACT 60.295 38.462 28.39 7.02 31.74 2.66
2409 5227 5.867174 GCCATACAATTGTACCTTTGGAAAC 59.133 40.000 28.39 14.31 31.74 2.78
2410 5228 5.540337 TGCCATACAATTGTACCTTTGGAAA 59.460 36.000 28.39 17.73 31.74 3.13
2411 5229 5.047660 GTGCCATACAATTGTACCTTTGGAA 60.048 40.000 28.39 20.60 31.74 3.53
2412 5230 4.461081 GTGCCATACAATTGTACCTTTGGA 59.539 41.667 28.39 16.36 31.74 3.53
2413 5231 4.219507 TGTGCCATACAATTGTACCTTTGG 59.780 41.667 23.19 23.19 36.06 3.28
2414 5232 5.384063 TGTGCCATACAATTGTACCTTTG 57.616 39.130 20.26 13.97 36.06 2.77
2415 5233 6.183360 GCTATGTGCCATACAATTGTACCTTT 60.183 38.462 20.26 1.97 43.77 3.11
2416 5234 5.299279 GCTATGTGCCATACAATTGTACCTT 59.701 40.000 20.26 2.35 43.77 3.50
2417 5235 4.821805 GCTATGTGCCATACAATTGTACCT 59.178 41.667 20.26 3.11 43.77 3.08
2418 5236 4.578516 TGCTATGTGCCATACAATTGTACC 59.421 41.667 20.26 12.01 43.77 3.34
2419 5237 5.749596 TGCTATGTGCCATACAATTGTAC 57.250 39.130 20.26 10.65 43.77 2.90
2420 5238 6.765915 TTTGCTATGTGCCATACAATTGTA 57.234 33.333 20.14 20.14 43.77 2.41
2421 5239 5.657826 TTTGCTATGTGCCATACAATTGT 57.342 34.783 16.68 16.68 43.77 2.71
2422 5240 8.821147 ATTATTTGCTATGTGCCATACAATTG 57.179 30.769 3.24 3.24 43.77 2.32
2424 5242 9.300681 ACTATTATTTGCTATGTGCCATACAAT 57.699 29.630 0.00 0.00 43.77 2.71
2425 5243 8.690203 ACTATTATTTGCTATGTGCCATACAA 57.310 30.769 0.00 0.00 43.77 2.41
2426 5244 9.214957 GTACTATTATTTGCTATGTGCCATACA 57.785 33.333 0.00 0.00 44.87 2.29
2427 5245 9.436957 AGTACTATTATTTGCTATGTGCCATAC 57.563 33.333 0.00 0.00 42.00 2.39
2428 5246 9.435688 CAGTACTATTATTTGCTATGTGCCATA 57.564 33.333 0.00 0.00 42.00 2.74
2429 5247 8.156820 TCAGTACTATTATTTGCTATGTGCCAT 58.843 33.333 0.00 0.00 42.00 4.40
2430 5248 7.505258 TCAGTACTATTATTTGCTATGTGCCA 58.495 34.615 0.00 0.00 42.00 4.92
2431 5249 7.962964 TCAGTACTATTATTTGCTATGTGCC 57.037 36.000 0.00 0.00 42.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.