Multiple sequence alignment - TraesCS5D01G441900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G441900 chr5D 100.000 2815 0 0 355 3169 494214344 494217158 0.000000e+00 5199.0
1 TraesCS5D01G441900 chr5D 89.590 586 37 9 2584 3169 510554336 510553775 0.000000e+00 723.0
2 TraesCS5D01G441900 chr5D 100.000 296 0 0 1 296 494213990 494214285 5.980000e-152 547.0
3 TraesCS5D01G441900 chr5D 81.690 497 82 4 1008 1501 494189107 494189597 3.810000e-109 405.0
4 TraesCS5D01G441900 chr5D 94.253 174 10 0 77 250 494214344 494214517 1.870000e-67 267.0
5 TraesCS5D01G441900 chr5A 94.477 2245 86 16 953 3169 617206057 617208291 0.000000e+00 3424.0
6 TraesCS5D01G441900 chr5A 86.863 510 43 11 2659 3168 470930655 470930170 1.660000e-152 549.0
7 TraesCS5D01G441900 chr5A 81.076 502 86 4 1003 1501 617204513 617205008 2.960000e-105 392.0
8 TraesCS5D01G441900 chr5B 93.310 1435 66 19 1749 3169 610499593 610501011 0.000000e+00 2091.0
9 TraesCS5D01G441900 chr5B 92.703 1439 65 15 940 2347 610304720 610306149 0.000000e+00 2039.0
10 TraesCS5D01G441900 chr5B 96.654 269 7 2 2342 2609 610311237 610311504 2.240000e-121 446.0
11 TraesCS5D01G441900 chr5B 96.296 270 6 1 678 943 610498867 610499136 1.040000e-119 440.0
12 TraesCS5D01G441900 chr5B 82.186 494 82 2 1008 1501 610301051 610301538 1.360000e-113 420.0
13 TraesCS5D01G441900 chr5B 87.248 298 23 7 379 671 477431917 477431630 3.050000e-85 326.0
14 TraesCS5D01G441900 chr5B 93.143 175 7 2 934 1105 610499361 610499533 5.250000e-63 252.0
15 TraesCS5D01G441900 chr5B 100.000 44 0 0 253 296 683462285 683462242 7.290000e-12 82.4
16 TraesCS5D01G441900 chr5B 97.727 44 1 0 253 296 400834165 400834208 3.390000e-10 76.8
17 TraesCS5D01G441900 chr5B 95.455 44 2 0 900 943 610499131 610499174 1.580000e-08 71.3
18 TraesCS5D01G441900 chr7B 89.932 586 42 9 2584 3169 228803194 228802626 0.000000e+00 739.0
19 TraesCS5D01G441900 chr7B 86.888 511 43 11 2659 3169 593348799 593349285 4.620000e-153 551.0
20 TraesCS5D01G441900 chr7B 97.727 44 1 0 253 296 364862981 364862938 3.390000e-10 76.8
21 TraesCS5D01G441900 chr7B 97.727 44 1 0 253 296 640393618 640393575 3.390000e-10 76.8
22 TraesCS5D01G441900 chr2D 89.590 586 39 12 2584 3169 29094896 29095459 0.000000e+00 725.0
23 TraesCS5D01G441900 chr2D 95.899 317 9 2 356 668 37231369 37231685 7.840000e-141 510.0
24 TraesCS5D01G441900 chr2D 94.400 250 14 0 1 250 37231292 37231541 4.960000e-103 385.0
25 TraesCS5D01G441900 chr2D 86.087 115 11 2 828 942 568229209 568229318 5.550000e-23 119.0
26 TraesCS5D01G441900 chr7D 89.267 587 38 10 2584 3169 574099070 574099632 0.000000e+00 712.0
27 TraesCS5D01G441900 chr4D 88.737 586 45 10 2584 3169 85850338 85850902 0.000000e+00 697.0
28 TraesCS5D01G441900 chr4D 96.923 260 4 2 416 671 450013945 450013686 1.750000e-117 433.0
29 TraesCS5D01G441900 chr4D 91.667 300 12 8 380 671 23218099 23218393 1.370000e-108 403.0
30 TraesCS5D01G441900 chr4D 84.834 211 25 6 42 248 23218036 23218243 4.140000e-49 206.0
31 TraesCS5D01G441900 chr4A 87.671 511 37 12 2659 3169 742008938 742009422 3.550000e-159 571.0
32 TraesCS5D01G441900 chr4A 76.346 520 82 22 1586 2087 508274526 508274030 1.140000e-59 241.0
33 TraesCS5D01G441900 chr4A 77.644 331 63 8 1766 2087 508494458 508494130 1.160000e-44 191.0
34 TraesCS5D01G441900 chr3A 86.965 514 42 13 2656 3168 662598184 662598673 3.570000e-154 555.0
35 TraesCS5D01G441900 chr3A 90.726 248 23 0 1 248 506981027 506981274 6.550000e-87 331.0
36 TraesCS5D01G441900 chrUn 100.000 296 0 0 1 296 341452915 341452620 5.980000e-152 547.0
37 TraesCS5D01G441900 chr6D 93.458 321 8 3 355 671 447243819 447243508 6.190000e-127 464.0
38 TraesCS5D01G441900 chr6D 95.200 250 12 0 1 250 447243895 447243646 2.290000e-106 396.0
39 TraesCS5D01G441900 chr3D 91.118 304 10 10 380 671 208582907 208583205 2.290000e-106 396.0
40 TraesCS5D01G441900 chr3D 86.800 250 8 15 1 250 208582834 208583058 4.060000e-64 255.0
41 TraesCS5D01G441900 chr1B 87.205 297 26 9 379 671 96627630 96627918 8.480000e-86 327.0
42 TraesCS5D01G441900 chr1B 86.869 297 27 8 379 671 684911029 684911317 3.940000e-84 322.0
43 TraesCS5D01G441900 chr1B 86.780 295 24 6 379 668 564890149 564890433 6.600000e-82 315.0
44 TraesCS5D01G441900 chr1B 97.727 44 1 0 253 296 168820113 168820156 3.390000e-10 76.8
45 TraesCS5D01G441900 chr2A 90.000 250 25 0 1 250 13122127 13121878 1.100000e-84 324.0
46 TraesCS5D01G441900 chr2A 85.217 115 12 2 828 942 707747451 707747560 2.580000e-21 113.0
47 TraesCS5D01G441900 chr3B 87.938 257 16 7 2914 3169 60386691 60386449 4.000000e-74 289.0
48 TraesCS5D01G441900 chr3B 88.750 240 22 4 12 250 805369210 805368975 4.000000e-74 289.0
49 TraesCS5D01G441900 chr3B 85.477 241 27 6 379 619 791619441 791619673 8.780000e-61 244.0
50 TraesCS5D01G441900 chr4B 77.551 490 79 16 1612 2087 109222407 109222879 1.870000e-67 267.0
51 TraesCS5D01G441900 chr4B 100.000 44 0 0 253 296 555126954 555126911 7.290000e-12 82.4
52 TraesCS5D01G441900 chr1D 85.915 213 23 7 42 250 246078932 246079141 1.480000e-53 220.0
53 TraesCS5D01G441900 chr2B 86.957 115 10 2 828 942 680766670 680766779 1.190000e-24 124.0
54 TraesCS5D01G441900 chr6B 97.727 44 1 0 253 296 448186522 448186565 3.390000e-10 76.8
55 TraesCS5D01G441900 chr6B 97.727 44 1 0 253 296 647847252 647847209 3.390000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G441900 chr5D 494213990 494217158 3168 False 2004.333333 5199 98.084333 1 3169 3 chr5D.!!$F2 3168
1 TraesCS5D01G441900 chr5D 510553775 510554336 561 True 723.000000 723 89.590000 2584 3169 1 chr5D.!!$R1 585
2 TraesCS5D01G441900 chr5A 617204513 617208291 3778 False 1908.000000 3424 87.776500 953 3169 2 chr5A.!!$F1 2216
3 TraesCS5D01G441900 chr5B 610301051 610306149 5098 False 1229.500000 2039 87.444500 940 2347 2 chr5B.!!$F3 1407
4 TraesCS5D01G441900 chr5B 610498867 610501011 2144 False 713.575000 2091 94.551000 678 3169 4 chr5B.!!$F4 2491
5 TraesCS5D01G441900 chr7B 228802626 228803194 568 True 739.000000 739 89.932000 2584 3169 1 chr7B.!!$R1 585
6 TraesCS5D01G441900 chr2D 29094896 29095459 563 False 725.000000 725 89.590000 2584 3169 1 chr2D.!!$F1 585
7 TraesCS5D01G441900 chr7D 574099070 574099632 562 False 712.000000 712 89.267000 2584 3169 1 chr7D.!!$F1 585
8 TraesCS5D01G441900 chr4D 85850338 85850902 564 False 697.000000 697 88.737000 2584 3169 1 chr4D.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 604 0.101219 TGCGATCTGATGGTCTCGTG 59.899 55.0 0.0 0.0 33.8 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 5874 0.956633 ATTAGCATCGCATGGCAAGG 59.043 50.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 4.778143 GCCGGGGCGACAAGTGAT 62.778 66.667 2.18 0.00 0.00 3.06
91 92 2.819595 CCGGGGCGACAAGTGATG 60.820 66.667 0.00 0.00 0.00 3.07
92 93 3.499737 CGGGGCGACAAGTGATGC 61.500 66.667 0.00 0.00 0.00 3.91
93 94 3.499737 GGGGCGACAAGTGATGCG 61.500 66.667 0.00 0.00 0.00 4.73
94 95 3.499737 GGGCGACAAGTGATGCGG 61.500 66.667 0.00 0.00 0.00 5.69
95 96 4.166011 GGCGACAAGTGATGCGGC 62.166 66.667 0.00 0.00 42.88 6.53
98 99 3.499737 GACAAGTGATGCGGCGGG 61.500 66.667 9.78 0.00 0.00 6.13
217 218 3.554692 CTTCGTGGTCGCGCATCC 61.555 66.667 8.75 9.75 36.96 3.51
218 219 4.365505 TTCGTGGTCGCGCATCCA 62.366 61.111 15.13 15.13 36.96 3.41
219 220 3.657448 TTCGTGGTCGCGCATCCAT 62.657 57.895 20.55 0.00 36.09 3.41
220 221 3.928769 CGTGGTCGCGCATCCATG 61.929 66.667 20.55 20.44 36.09 3.66
221 222 3.576356 GTGGTCGCGCATCCATGG 61.576 66.667 20.55 4.97 36.09 3.66
232 233 2.683465 ATCCATGGCGGCCTTGACT 61.683 57.895 30.21 16.82 31.33 3.41
233 234 2.898920 ATCCATGGCGGCCTTGACTG 62.899 60.000 30.21 16.93 31.33 3.51
234 235 3.136123 CATGGCGGCCTTGACTGG 61.136 66.667 25.99 2.20 31.33 4.00
242 243 2.125350 CCTTGACTGGCTCGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
243 244 2.654079 CCTTGACTGGCTCGCTCCT 61.654 63.158 0.00 0.00 0.00 3.69
244 245 1.153667 CTTGACTGGCTCGCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
245 246 1.603236 CTTGACTGGCTCGCTCCTCT 61.603 60.000 0.00 0.00 0.00 3.69
246 247 1.599606 TTGACTGGCTCGCTCCTCTC 61.600 60.000 0.00 0.00 0.00 3.20
247 248 1.752694 GACTGGCTCGCTCCTCTCT 60.753 63.158 0.00 0.00 0.00 3.10
248 249 1.724582 GACTGGCTCGCTCCTCTCTC 61.725 65.000 0.00 0.00 0.00 3.20
249 250 1.453745 CTGGCTCGCTCCTCTCTCT 60.454 63.158 0.00 0.00 0.00 3.10
252 253 0.107831 GGCTCGCTCCTCTCTCTCTA 59.892 60.000 0.00 0.00 0.00 2.43
253 254 1.271379 GGCTCGCTCCTCTCTCTCTAT 60.271 57.143 0.00 0.00 0.00 1.98
254 255 2.076863 GCTCGCTCCTCTCTCTCTATC 58.923 57.143 0.00 0.00 0.00 2.08
255 256 2.549992 GCTCGCTCCTCTCTCTCTATCA 60.550 54.545 0.00 0.00 0.00 2.15
257 258 3.935203 CTCGCTCCTCTCTCTCTATCATC 59.065 52.174 0.00 0.00 0.00 2.92
258 259 3.326297 TCGCTCCTCTCTCTCTATCATCA 59.674 47.826 0.00 0.00 0.00 3.07
259 260 4.019411 TCGCTCCTCTCTCTCTATCATCAT 60.019 45.833 0.00 0.00 0.00 2.45
260 261 4.333649 CGCTCCTCTCTCTCTATCATCATC 59.666 50.000 0.00 0.00 0.00 2.92
261 262 5.255687 GCTCCTCTCTCTCTATCATCATCA 58.744 45.833 0.00 0.00 0.00 3.07
262 263 5.711506 GCTCCTCTCTCTCTATCATCATCAA 59.288 44.000 0.00 0.00 0.00 2.57
263 264 6.349611 GCTCCTCTCTCTCTATCATCATCAAC 60.350 46.154 0.00 0.00 0.00 3.18
264 265 6.009589 TCCTCTCTCTCTATCATCATCAACC 58.990 44.000 0.00 0.00 0.00 3.77
265 266 6.012113 CCTCTCTCTCTATCATCATCAACCT 58.988 44.000 0.00 0.00 0.00 3.50
267 268 6.851318 TCTCTCTCTATCATCATCAACCTCT 58.149 40.000 0.00 0.00 0.00 3.69
269 270 6.009589 TCTCTCTATCATCATCAACCTCTCC 58.990 44.000 0.00 0.00 0.00 3.71
270 271 5.963092 TCTCTATCATCATCAACCTCTCCT 58.037 41.667 0.00 0.00 0.00 3.69
271 272 6.380414 TCTCTATCATCATCAACCTCTCCTT 58.620 40.000 0.00 0.00 0.00 3.36
273 274 4.703379 ATCATCATCAACCTCTCCTTCC 57.297 45.455 0.00 0.00 0.00 3.46
274 275 2.432146 TCATCATCAACCTCTCCTTCCG 59.568 50.000 0.00 0.00 0.00 4.30
275 276 0.537188 TCATCAACCTCTCCTTCCGC 59.463 55.000 0.00 0.00 0.00 5.54
278 279 0.836400 TCAACCTCTCCTTCCGCCTT 60.836 55.000 0.00 0.00 0.00 4.35
280 281 2.124942 CCTCTCCTTCCGCCTTGC 60.125 66.667 0.00 0.00 0.00 4.01
281 282 2.664081 CCTCTCCTTCCGCCTTGCT 61.664 63.158 0.00 0.00 0.00 3.91
283 284 2.437359 CTCCTTCCGCCTTGCTGG 60.437 66.667 0.00 0.00 39.35 4.85
285 286 2.262774 CTCCTTCCGCCTTGCTGGAT 62.263 60.000 0.49 0.00 38.35 3.41
286 287 1.821332 CCTTCCGCCTTGCTGGATC 60.821 63.158 0.49 0.00 38.35 3.36
287 288 1.078214 CTTCCGCCTTGCTGGATCA 60.078 57.895 0.00 0.00 38.35 2.92
288 289 0.677731 CTTCCGCCTTGCTGGATCAA 60.678 55.000 0.00 0.00 38.35 2.57
290 291 1.078214 CCGCCTTGCTGGATCAAGA 60.078 57.895 0.00 0.00 44.61 3.02
291 292 0.677731 CCGCCTTGCTGGATCAAGAA 60.678 55.000 0.00 0.00 44.61 2.52
293 294 1.101331 GCCTTGCTGGATCAAGAAGG 58.899 55.000 17.60 17.60 44.61 3.46
294 295 1.340405 GCCTTGCTGGATCAAGAAGGA 60.340 52.381 22.68 4.03 44.61 3.36
295 296 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
497 498 3.657448 TTCGTGGTCGCGCATCCAT 62.657 57.895 20.55 0.00 36.09 3.41
498 499 3.928769 CGTGGTCGCGCATCCATG 61.929 66.667 20.55 20.44 36.09 3.66
508 509 2.124193 CATCCATGGCGGCCTTGA 60.124 61.111 30.21 19.20 31.33 3.02
509 510 2.124151 ATCCATGGCGGCCTTGAC 60.124 61.111 30.21 1.35 31.33 3.18
510 511 2.683465 ATCCATGGCGGCCTTGACT 61.683 57.895 30.21 16.82 31.33 3.41
511 512 2.898920 ATCCATGGCGGCCTTGACTG 62.899 60.000 30.21 16.93 31.33 3.51
512 513 3.136123 CATGGCGGCCTTGACTGG 61.136 66.667 25.99 2.20 31.33 4.00
520 521 2.125350 CCTTGACTGGCTCGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
522 523 1.153667 CTTGACTGGCTCGCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
523 524 1.603236 CTTGACTGGCTCGCTCCTCT 61.603 60.000 0.00 0.00 0.00 3.69
524 525 1.599606 TTGACTGGCTCGCTCCTCTC 61.600 60.000 0.00 0.00 0.00 3.20
525 526 1.752694 GACTGGCTCGCTCCTCTCT 60.753 63.158 0.00 0.00 0.00 3.10
526 527 1.724582 GACTGGCTCGCTCCTCTCTC 61.725 65.000 0.00 0.00 0.00 3.20
527 528 1.453745 CTGGCTCGCTCCTCTCTCT 60.454 63.158 0.00 0.00 0.00 3.10
528 529 1.727511 CTGGCTCGCTCCTCTCTCTG 61.728 65.000 0.00 0.00 0.00 3.35
530 531 1.319614 GGCTCGCTCCTCTCTCTGTT 61.320 60.000 0.00 0.00 0.00 3.16
531 532 0.530288 GCTCGCTCCTCTCTCTGTTT 59.470 55.000 0.00 0.00 0.00 2.83
532 533 1.735369 GCTCGCTCCTCTCTCTGTTTG 60.735 57.143 0.00 0.00 0.00 2.93
533 534 0.244994 TCGCTCCTCTCTCTGTTTGC 59.755 55.000 0.00 0.00 0.00 3.68
534 535 0.246086 CGCTCCTCTCTCTGTTTGCT 59.754 55.000 0.00 0.00 0.00 3.91
535 536 1.724429 GCTCCTCTCTCTGTTTGCTG 58.276 55.000 0.00 0.00 0.00 4.41
537 538 1.898472 CTCCTCTCTCTGTTTGCTGGA 59.102 52.381 0.00 0.00 0.00 3.86
538 539 1.898472 TCCTCTCTCTGTTTGCTGGAG 59.102 52.381 0.00 0.00 0.00 3.86
539 540 1.898472 CCTCTCTCTGTTTGCTGGAGA 59.102 52.381 0.00 0.00 35.25 3.71
541 542 1.270826 TCTCTCTGTTTGCTGGAGACG 59.729 52.381 0.00 0.00 33.33 4.18
542 543 0.319900 TCTCTGTTTGCTGGAGACGC 60.320 55.000 0.00 0.00 32.09 5.19
543 544 0.320247 CTCTGTTTGCTGGAGACGCT 60.320 55.000 0.00 0.00 0.00 5.07
544 545 0.601046 TCTGTTTGCTGGAGACGCTG 60.601 55.000 0.00 0.00 0.00 5.18
546 547 0.179059 TGTTTGCTGGAGACGCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
547 548 0.514691 GTTTGCTGGAGACGCTGAAG 59.485 55.000 0.00 0.00 0.00 3.02
548 549 0.392706 TTTGCTGGAGACGCTGAAGA 59.607 50.000 0.00 0.00 0.00 2.87
550 551 1.803519 GCTGGAGACGCTGAAGACG 60.804 63.158 0.00 0.00 0.00 4.18
552 553 0.179176 CTGGAGACGCTGAAGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
553 554 1.137825 GGAGACGCTGAAGACGAGG 59.862 63.158 0.00 0.00 0.00 4.63
554 555 1.306642 GGAGACGCTGAAGACGAGGA 61.307 60.000 0.00 0.00 0.00 3.71
555 556 0.736053 GAGACGCTGAAGACGAGGAT 59.264 55.000 0.00 0.00 0.00 3.24
558 559 2.356382 AGACGCTGAAGACGAGGATAAG 59.644 50.000 0.00 0.00 0.00 1.73
559 560 1.405821 ACGCTGAAGACGAGGATAAGG 59.594 52.381 0.00 0.00 0.00 2.69
560 561 1.405821 CGCTGAAGACGAGGATAAGGT 59.594 52.381 0.00 0.00 0.00 3.50
563 564 4.612943 GCTGAAGACGAGGATAAGGTAAG 58.387 47.826 0.00 0.00 0.00 2.34
564 565 4.500035 GCTGAAGACGAGGATAAGGTAAGG 60.500 50.000 0.00 0.00 0.00 2.69
565 566 4.863548 TGAAGACGAGGATAAGGTAAGGA 58.136 43.478 0.00 0.00 0.00 3.36
566 567 5.266788 TGAAGACGAGGATAAGGTAAGGAA 58.733 41.667 0.00 0.00 0.00 3.36
567 568 5.718130 TGAAGACGAGGATAAGGTAAGGAAA 59.282 40.000 0.00 0.00 0.00 3.13
568 569 6.211986 TGAAGACGAGGATAAGGTAAGGAAAA 59.788 38.462 0.00 0.00 0.00 2.29
569 570 6.616237 AGACGAGGATAAGGTAAGGAAAAA 57.384 37.500 0.00 0.00 0.00 1.94
592 593 9.994432 AAAAATAGAATAAGAAGTTGCGATCTG 57.006 29.630 0.00 0.00 0.00 2.90
593 594 8.948631 AAATAGAATAAGAAGTTGCGATCTGA 57.051 30.769 0.00 0.00 0.00 3.27
594 595 9.553064 AAATAGAATAAGAAGTTGCGATCTGAT 57.447 29.630 0.00 0.00 0.00 2.90
595 596 6.841443 AGAATAAGAAGTTGCGATCTGATG 57.159 37.500 0.00 0.00 0.00 3.07
596 597 5.757320 AGAATAAGAAGTTGCGATCTGATGG 59.243 40.000 0.00 0.00 0.00 3.51
598 599 2.898705 AGAAGTTGCGATCTGATGGTC 58.101 47.619 0.00 0.00 0.00 4.02
600 601 2.593346 AGTTGCGATCTGATGGTCTC 57.407 50.000 0.00 0.00 0.00 3.36
601 602 1.202348 AGTTGCGATCTGATGGTCTCG 60.202 52.381 0.00 0.00 0.00 4.04
602 603 0.817654 TTGCGATCTGATGGTCTCGT 59.182 50.000 0.00 0.00 33.80 4.18
603 604 0.101219 TGCGATCTGATGGTCTCGTG 59.899 55.000 0.00 0.00 33.80 4.35
604 605 1.211818 GCGATCTGATGGTCTCGTGC 61.212 60.000 0.00 0.00 33.80 5.34
605 606 0.101219 CGATCTGATGGTCTCGTGCA 59.899 55.000 0.00 0.00 0.00 4.57
606 607 1.850377 GATCTGATGGTCTCGTGCAG 58.150 55.000 0.00 0.00 0.00 4.41
607 608 0.179089 ATCTGATGGTCTCGTGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
611 612 2.230994 GATGGTCTCGTGCAGCCAGA 62.231 60.000 0.00 0.00 33.42 3.86
612 613 1.620739 ATGGTCTCGTGCAGCCAGAT 61.621 55.000 0.00 0.00 33.42 2.90
613 614 1.520342 GGTCTCGTGCAGCCAGATC 60.520 63.158 0.00 0.00 0.00 2.75
614 615 1.875813 GTCTCGTGCAGCCAGATCG 60.876 63.158 0.00 0.00 0.00 3.69
616 617 4.147449 TCGTGCAGCCAGATCGGG 62.147 66.667 7.64 7.64 34.06 5.14
641 642 4.699522 GGCAGACCGGCCGAAACT 62.700 66.667 30.73 19.27 45.40 2.66
653 654 2.254350 GAAACTTTCGGCCGCACC 59.746 61.111 23.51 0.73 0.00 5.01
817 822 1.071299 AACAGCGCACCACAGATCA 59.929 52.632 11.47 0.00 0.00 2.92
818 823 0.952497 AACAGCGCACCACAGATCAG 60.952 55.000 11.47 0.00 0.00 2.90
927 970 2.104331 GCAGCTGCACATCCATGC 59.896 61.111 33.36 2.16 46.32 4.06
938 981 1.133976 ACATCCATGCCCAAGCTCTAC 60.134 52.381 0.00 0.00 40.80 2.59
943 986 1.765314 CATGCCCAAGCTCTACCTACT 59.235 52.381 0.00 0.00 40.80 2.57
944 987 1.195115 TGCCCAAGCTCTACCTACTG 58.805 55.000 0.00 0.00 40.80 2.74
945 988 1.196012 GCCCAAGCTCTACCTACTGT 58.804 55.000 0.00 0.00 35.50 3.55
1481 5152 3.518998 CCGCGTCAGGGATCTCGT 61.519 66.667 4.92 0.00 0.00 4.18
1483 5154 2.024871 GCGTCAGGGATCTCGTCG 59.975 66.667 0.00 0.00 0.00 5.12
1537 5208 3.586174 CCCATCACATGAGGATGAGGTAT 59.414 47.826 24.11 0.00 43.80 2.73
1556 5227 1.185618 TGTAAGCCACTCACTCGCCT 61.186 55.000 0.00 0.00 0.00 5.52
1559 5230 2.738213 AAGCCACTCACTCGCCTTGG 62.738 60.000 0.00 0.00 0.00 3.61
1566 5238 4.379243 ACTCGCCTTGGCCTCGTG 62.379 66.667 3.32 6.09 0.00 4.35
1595 5268 2.395654 GTCTCACTCTGTCCAACGAAC 58.604 52.381 0.00 0.00 0.00 3.95
1600 5273 1.272769 ACTCTGTCCAACGAACTAGGC 59.727 52.381 0.00 0.00 0.00 3.93
1826 5511 4.758251 CACACCTGGATCCGCGCA 62.758 66.667 8.75 0.00 0.00 6.09
2132 5817 2.103373 GTCTACAGCCTCATCTCCACA 58.897 52.381 0.00 0.00 0.00 4.17
2152 5837 2.102357 CGACGACCCACTCATCGG 59.898 66.667 0.00 0.00 42.67 4.18
2172 5857 1.059264 GCTTACGCAGTTCATGACGTC 59.941 52.381 9.11 9.11 37.78 4.34
2180 5869 0.865769 GTTCATGACGTCGTTGGCTT 59.134 50.000 7.76 0.00 0.00 4.35
2182 5871 0.249699 TCATGACGTCGTTGGCTTGT 60.250 50.000 7.76 0.00 0.00 3.16
2184 5873 0.586319 ATGACGTCGTTGGCTTGTTG 59.414 50.000 11.62 0.00 0.00 3.33
2185 5874 1.368850 GACGTCGTTGGCTTGTTGC 60.369 57.895 0.00 0.00 41.94 4.17
2210 5901 5.199024 TGCCATGCGATGCTAATAAAATT 57.801 34.783 0.00 0.00 0.00 1.82
2323 6024 0.758734 TGGTGCTGCTACTGTTCTGT 59.241 50.000 0.00 0.00 0.00 3.41
2325 6026 1.270305 GGTGCTGCTACTGTTCTGTCA 60.270 52.381 0.00 0.00 0.00 3.58
2683 6386 0.456312 CGAAGTAGCTCACCGTCACC 60.456 60.000 0.00 0.00 0.00 4.02
2961 6671 3.799281 TGGTCAAGAACAGCCTTTTTG 57.201 42.857 0.00 0.00 0.00 2.44
3033 6749 6.696441 ACTAGTATAACTGAACTTCGGAGG 57.304 41.667 4.52 0.00 0.00 4.30
3071 6792 0.908198 AGGATGAAGTGAGCTGGGAC 59.092 55.000 0.00 0.00 0.00 4.46
3077 6798 1.254284 AAGTGAGCTGGGACGAGGAG 61.254 60.000 0.00 0.00 0.00 3.69
3078 6799 1.679305 GTGAGCTGGGACGAGGAGA 60.679 63.158 0.00 0.00 0.00 3.71
3079 6800 1.076727 TGAGCTGGGACGAGGAGAA 59.923 57.895 0.00 0.00 0.00 2.87
3080 6801 0.541998 TGAGCTGGGACGAGGAGAAA 60.542 55.000 0.00 0.00 0.00 2.52
3081 6802 0.174617 GAGCTGGGACGAGGAGAAAG 59.825 60.000 0.00 0.00 0.00 2.62
3082 6803 1.219393 GCTGGGACGAGGAGAAAGG 59.781 63.158 0.00 0.00 0.00 3.11
3113 6834 3.910627 ACTTGTTTATGACTCCTCCCAGT 59.089 43.478 0.00 0.00 0.00 4.00
3158 6879 2.771763 CTTCCGTGAGCAGCGAGGTT 62.772 60.000 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.778143 ATCACTTGTCGCCCCGGC 62.778 66.667 0.00 0.00 37.85 6.13
74 75 2.819595 CATCACTTGTCGCCCCGG 60.820 66.667 0.00 0.00 0.00 5.73
75 76 3.499737 GCATCACTTGTCGCCCCG 61.500 66.667 0.00 0.00 0.00 5.73
77 78 3.499737 CCGCATCACTTGTCGCCC 61.500 66.667 0.00 0.00 0.00 6.13
81 82 3.499737 CCCGCCGCATCACTTGTC 61.500 66.667 0.00 0.00 0.00 3.18
199 200 4.210304 GATGCGCGACCACGAAGC 62.210 66.667 12.10 0.00 42.66 3.86
201 202 3.657448 ATGGATGCGCGACCACGAA 62.657 57.895 23.68 5.40 42.66 3.85
202 203 4.141965 ATGGATGCGCGACCACGA 62.142 61.111 23.68 5.72 42.66 4.35
203 204 3.928769 CATGGATGCGCGACCACG 61.929 66.667 23.68 14.63 39.06 4.94
204 205 3.576356 CCATGGATGCGCGACCAC 61.576 66.667 23.68 4.19 39.06 4.16
212 213 3.908081 CAAGGCCGCCATGGATGC 61.908 66.667 18.40 16.65 42.00 3.91
214 215 2.124151 GTCAAGGCCGCCATGGAT 60.124 61.111 18.40 0.00 42.00 3.41
215 216 3.329889 AGTCAAGGCCGCCATGGA 61.330 61.111 18.40 4.30 42.00 3.41
217 218 3.136123 CCAGTCAAGGCCGCCATG 61.136 66.667 13.15 10.65 0.00 3.66
225 226 2.125350 GGAGCGAGCCAGTCAAGG 60.125 66.667 0.00 0.00 0.00 3.61
226 227 1.153667 GAGGAGCGAGCCAGTCAAG 60.154 63.158 0.00 0.00 0.00 3.02
227 228 1.599606 GAGAGGAGCGAGCCAGTCAA 61.600 60.000 0.00 0.00 0.00 3.18
228 229 2.036414 AGAGGAGCGAGCCAGTCA 59.964 61.111 0.00 0.00 0.00 3.41
232 233 1.453015 GAGAGAGAGGAGCGAGCCA 60.453 63.158 0.00 0.00 0.00 4.75
233 234 0.107831 TAGAGAGAGAGGAGCGAGCC 59.892 60.000 0.00 0.00 0.00 4.70
234 235 2.076863 GATAGAGAGAGAGGAGCGAGC 58.923 57.143 0.00 0.00 0.00 5.03
235 236 3.401033 TGATAGAGAGAGAGGAGCGAG 57.599 52.381 0.00 0.00 0.00 5.03
236 237 3.326297 TGATGATAGAGAGAGAGGAGCGA 59.674 47.826 0.00 0.00 0.00 4.93
237 238 3.673902 TGATGATAGAGAGAGAGGAGCG 58.326 50.000 0.00 0.00 0.00 5.03
238 239 5.255687 TGATGATGATAGAGAGAGAGGAGC 58.744 45.833 0.00 0.00 0.00 4.70
239 240 6.151648 GGTTGATGATGATAGAGAGAGAGGAG 59.848 46.154 0.00 0.00 0.00 3.69
240 241 6.009589 GGTTGATGATGATAGAGAGAGAGGA 58.990 44.000 0.00 0.00 0.00 3.71
242 243 6.944290 AGAGGTTGATGATGATAGAGAGAGAG 59.056 42.308 0.00 0.00 0.00 3.20
243 244 6.851318 AGAGGTTGATGATGATAGAGAGAGA 58.149 40.000 0.00 0.00 0.00 3.10
244 245 6.151648 GGAGAGGTTGATGATGATAGAGAGAG 59.848 46.154 0.00 0.00 0.00 3.20
245 246 6.009589 GGAGAGGTTGATGATGATAGAGAGA 58.990 44.000 0.00 0.00 0.00 3.10
246 247 6.012113 AGGAGAGGTTGATGATGATAGAGAG 58.988 44.000 0.00 0.00 0.00 3.20
247 248 5.963092 AGGAGAGGTTGATGATGATAGAGA 58.037 41.667 0.00 0.00 0.00 3.10
248 249 6.295236 GGAAGGAGAGGTTGATGATGATAGAG 60.295 46.154 0.00 0.00 0.00 2.43
249 250 5.541868 GGAAGGAGAGGTTGATGATGATAGA 59.458 44.000 0.00 0.00 0.00 1.98
252 253 3.070734 CGGAAGGAGAGGTTGATGATGAT 59.929 47.826 0.00 0.00 0.00 2.45
253 254 2.432146 CGGAAGGAGAGGTTGATGATGA 59.568 50.000 0.00 0.00 0.00 2.92
254 255 2.831333 CGGAAGGAGAGGTTGATGATG 58.169 52.381 0.00 0.00 0.00 3.07
255 256 1.139853 GCGGAAGGAGAGGTTGATGAT 59.860 52.381 0.00 0.00 0.00 2.45
257 258 0.462759 GGCGGAAGGAGAGGTTGATG 60.463 60.000 0.00 0.00 0.00 3.07
258 259 0.618968 AGGCGGAAGGAGAGGTTGAT 60.619 55.000 0.00 0.00 0.00 2.57
259 260 0.836400 AAGGCGGAAGGAGAGGTTGA 60.836 55.000 0.00 0.00 0.00 3.18
260 261 0.674895 CAAGGCGGAAGGAGAGGTTG 60.675 60.000 0.00 0.00 0.00 3.77
261 262 1.679898 CAAGGCGGAAGGAGAGGTT 59.320 57.895 0.00 0.00 0.00 3.50
262 263 2.960688 GCAAGGCGGAAGGAGAGGT 61.961 63.158 0.00 0.00 0.00 3.85
263 264 2.124942 GCAAGGCGGAAGGAGAGG 60.125 66.667 0.00 0.00 0.00 3.69
264 265 1.449246 CAGCAAGGCGGAAGGAGAG 60.449 63.158 0.00 0.00 0.00 3.20
265 266 2.665000 CAGCAAGGCGGAAGGAGA 59.335 61.111 0.00 0.00 0.00 3.71
267 268 2.257409 GATCCAGCAAGGCGGAAGGA 62.257 60.000 6.03 0.00 35.66 3.36
269 270 0.677731 TTGATCCAGCAAGGCGGAAG 60.678 55.000 6.03 0.00 35.66 3.46
270 271 0.677731 CTTGATCCAGCAAGGCGGAA 60.678 55.000 0.00 0.00 41.15 4.30
271 272 1.078214 CTTGATCCAGCAAGGCGGA 60.078 57.895 0.00 4.73 41.15 5.54
273 274 0.731417 CTTCTTGATCCAGCAAGGCG 59.269 55.000 4.79 0.00 44.14 5.52
274 275 1.101331 CCTTCTTGATCCAGCAAGGC 58.899 55.000 4.79 0.00 44.14 4.35
275 276 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
477 478 4.210304 GATGCGCGACCACGAAGC 62.210 66.667 12.10 0.00 42.66 3.86
478 479 3.554692 GGATGCGCGACCACGAAG 61.555 66.667 12.10 0.00 42.66 3.79
480 481 4.141965 ATGGATGCGCGACCACGA 62.142 61.111 23.68 5.72 42.66 4.35
481 482 3.928769 CATGGATGCGCGACCACG 61.929 66.667 23.68 14.63 39.06 4.94
482 483 3.576356 CCATGGATGCGCGACCAC 61.576 66.667 23.68 4.19 39.06 4.16
490 491 3.908081 CAAGGCCGCCATGGATGC 61.908 66.667 18.40 16.65 42.00 3.91
491 492 2.124193 TCAAGGCCGCCATGGATG 60.124 61.111 18.40 6.69 42.00 3.51
492 493 2.124151 GTCAAGGCCGCCATGGAT 60.124 61.111 18.40 0.00 42.00 3.41
504 505 1.153667 GAGGAGCGAGCCAGTCAAG 60.154 63.158 0.00 0.00 0.00 3.02
505 506 1.599606 GAGAGGAGCGAGCCAGTCAA 61.600 60.000 0.00 0.00 0.00 3.18
508 509 1.752694 GAGAGAGGAGCGAGCCAGT 60.753 63.158 0.00 0.00 0.00 4.00
509 510 1.453745 AGAGAGAGGAGCGAGCCAG 60.454 63.158 0.00 0.00 0.00 4.85
510 511 1.752310 CAGAGAGAGGAGCGAGCCA 60.752 63.158 0.00 0.00 0.00 4.75
511 512 1.319614 AACAGAGAGAGGAGCGAGCC 61.320 60.000 0.00 0.00 0.00 4.70
512 513 0.530288 AAACAGAGAGAGGAGCGAGC 59.470 55.000 0.00 0.00 0.00 5.03
514 515 0.244994 GCAAACAGAGAGAGGAGCGA 59.755 55.000 0.00 0.00 0.00 4.93
515 516 0.246086 AGCAAACAGAGAGAGGAGCG 59.754 55.000 0.00 0.00 0.00 5.03
516 517 1.675415 CCAGCAAACAGAGAGAGGAGC 60.675 57.143 0.00 0.00 0.00 4.70
517 518 1.898472 TCCAGCAAACAGAGAGAGGAG 59.102 52.381 0.00 0.00 0.00 3.69
518 519 1.898472 CTCCAGCAAACAGAGAGAGGA 59.102 52.381 0.00 0.00 0.00 3.71
519 520 1.898472 TCTCCAGCAAACAGAGAGAGG 59.102 52.381 0.00 0.00 32.92 3.69
520 521 2.670789 CGTCTCCAGCAAACAGAGAGAG 60.671 54.545 0.00 0.00 37.33 3.20
522 523 1.707632 CGTCTCCAGCAAACAGAGAG 58.292 55.000 0.00 0.00 37.33 3.20
523 524 0.319900 GCGTCTCCAGCAAACAGAGA 60.320 55.000 0.00 0.00 34.33 3.10
524 525 0.320247 AGCGTCTCCAGCAAACAGAG 60.320 55.000 0.00 0.00 37.01 3.35
525 526 0.601046 CAGCGTCTCCAGCAAACAGA 60.601 55.000 0.00 0.00 37.01 3.41
526 527 0.601046 TCAGCGTCTCCAGCAAACAG 60.601 55.000 0.00 0.00 37.01 3.16
527 528 0.179059 TTCAGCGTCTCCAGCAAACA 60.179 50.000 0.00 0.00 37.01 2.83
528 529 0.514691 CTTCAGCGTCTCCAGCAAAC 59.485 55.000 0.00 0.00 37.01 2.93
530 531 0.319900 GTCTTCAGCGTCTCCAGCAA 60.320 55.000 0.00 0.00 37.01 3.91
531 532 1.290324 GTCTTCAGCGTCTCCAGCA 59.710 57.895 0.00 0.00 37.01 4.41
532 533 1.803519 CGTCTTCAGCGTCTCCAGC 60.804 63.158 0.00 0.00 0.00 4.85
533 534 0.179176 CTCGTCTTCAGCGTCTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
534 535 1.587043 CCTCGTCTTCAGCGTCTCCA 61.587 60.000 0.00 0.00 0.00 3.86
535 536 1.137825 CCTCGTCTTCAGCGTCTCC 59.862 63.158 0.00 0.00 0.00 3.71
537 538 2.039818 TATCCTCGTCTTCAGCGTCT 57.960 50.000 0.00 0.00 0.00 4.18
538 539 2.541999 CCTTATCCTCGTCTTCAGCGTC 60.542 54.545 0.00 0.00 0.00 5.19
539 540 1.405821 CCTTATCCTCGTCTTCAGCGT 59.594 52.381 0.00 0.00 0.00 5.07
541 542 4.500035 CCTTACCTTATCCTCGTCTTCAGC 60.500 50.000 0.00 0.00 0.00 4.26
542 543 4.888239 TCCTTACCTTATCCTCGTCTTCAG 59.112 45.833 0.00 0.00 0.00 3.02
543 544 4.863548 TCCTTACCTTATCCTCGTCTTCA 58.136 43.478 0.00 0.00 0.00 3.02
544 545 5.848833 TTCCTTACCTTATCCTCGTCTTC 57.151 43.478 0.00 0.00 0.00 2.87
546 547 6.616237 TTTTTCCTTACCTTATCCTCGTCT 57.384 37.500 0.00 0.00 0.00 4.18
566 567 9.994432 CAGATCGCAACTTCTTATTCTATTTTT 57.006 29.630 0.00 0.00 0.00 1.94
567 568 9.383519 TCAGATCGCAACTTCTTATTCTATTTT 57.616 29.630 0.00 0.00 0.00 1.82
568 569 8.948631 TCAGATCGCAACTTCTTATTCTATTT 57.051 30.769 0.00 0.00 0.00 1.40
569 570 8.986847 CATCAGATCGCAACTTCTTATTCTATT 58.013 33.333 0.00 0.00 0.00 1.73
570 571 7.601886 CCATCAGATCGCAACTTCTTATTCTAT 59.398 37.037 0.00 0.00 0.00 1.98
571 572 6.925718 CCATCAGATCGCAACTTCTTATTCTA 59.074 38.462 0.00 0.00 0.00 2.10
573 574 5.525378 ACCATCAGATCGCAACTTCTTATTC 59.475 40.000 0.00 0.00 0.00 1.75
574 575 5.431765 ACCATCAGATCGCAACTTCTTATT 58.568 37.500 0.00 0.00 0.00 1.40
575 576 5.028549 ACCATCAGATCGCAACTTCTTAT 57.971 39.130 0.00 0.00 0.00 1.73
576 577 4.160439 AGACCATCAGATCGCAACTTCTTA 59.840 41.667 0.00 0.00 0.00 2.10
578 579 2.499289 AGACCATCAGATCGCAACTTCT 59.501 45.455 0.00 0.00 0.00 2.85
580 581 2.736719 CGAGACCATCAGATCGCAACTT 60.737 50.000 0.00 0.00 0.00 2.66
581 582 1.202348 CGAGACCATCAGATCGCAACT 60.202 52.381 0.00 0.00 0.00 3.16
582 583 1.203928 CGAGACCATCAGATCGCAAC 58.796 55.000 0.00 0.00 0.00 4.17
583 584 0.817654 ACGAGACCATCAGATCGCAA 59.182 50.000 0.00 0.00 38.71 4.85
584 585 0.101219 CACGAGACCATCAGATCGCA 59.899 55.000 0.00 0.00 38.71 5.10
585 586 1.211818 GCACGAGACCATCAGATCGC 61.212 60.000 0.00 0.00 38.71 4.58
586 587 0.101219 TGCACGAGACCATCAGATCG 59.899 55.000 0.00 0.00 40.86 3.69
587 588 1.850377 CTGCACGAGACCATCAGATC 58.150 55.000 0.00 0.00 0.00 2.75
588 589 0.179089 GCTGCACGAGACCATCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
589 590 1.216444 GCTGCACGAGACCATCAGA 59.784 57.895 0.00 0.00 0.00 3.27
592 593 1.812922 CTGGCTGCACGAGACCATC 60.813 63.158 0.50 0.00 30.39 3.51
593 594 1.620739 ATCTGGCTGCACGAGACCAT 61.621 55.000 0.50 0.00 35.78 3.55
594 595 2.230994 GATCTGGCTGCACGAGACCA 62.231 60.000 0.50 0.00 35.78 4.02
595 596 1.520342 GATCTGGCTGCACGAGACC 60.520 63.158 0.50 0.00 35.78 3.85
596 597 1.875813 CGATCTGGCTGCACGAGAC 60.876 63.158 0.50 0.00 35.78 3.36
598 599 2.584418 CCGATCTGGCTGCACGAG 60.584 66.667 0.50 0.00 0.00 4.18
625 626 2.183858 GAAAGTTTCGGCCGGTCTGC 62.184 60.000 27.83 11.45 0.00 4.26
626 627 1.866925 GAAAGTTTCGGCCGGTCTG 59.133 57.895 27.83 0.78 0.00 3.51
661 662 0.187361 TTTAAAGGTGGGGCAGCACT 59.813 50.000 0.00 0.00 33.95 4.40
662 663 0.603065 CTTTAAAGGTGGGGCAGCAC 59.397 55.000 7.37 0.00 33.95 4.40
664 665 2.276869 CCTTTAAAGGTGGGGCAGC 58.723 57.895 23.89 0.00 41.41 5.25
674 675 4.871933 AATTCCACAGGCACCTTTAAAG 57.128 40.909 8.32 8.32 0.00 1.85
775 780 1.138047 CTTGCACGTATCGGACCGAC 61.138 60.000 21.02 7.24 39.18 4.79
803 808 1.357258 CTGACTGATCTGTGGTGCGC 61.357 60.000 10.29 0.00 0.00 6.09
817 822 2.533266 ATGAGTTCGTTGCACTGACT 57.467 45.000 0.00 0.00 0.00 3.41
818 823 3.609103 AAATGAGTTCGTTGCACTGAC 57.391 42.857 0.00 0.00 0.00 3.51
927 970 1.405821 CGACAGTAGGTAGAGCTTGGG 59.594 57.143 0.00 0.00 0.00 4.12
938 981 3.063725 GCTACAGTAGTGACGACAGTAGG 59.936 52.174 22.48 10.18 33.31 3.18
943 986 1.199327 GCAGCTACAGTAGTGACGACA 59.801 52.381 9.42 0.00 0.00 4.35
944 987 1.469308 AGCAGCTACAGTAGTGACGAC 59.531 52.381 9.42 0.00 0.00 4.34
945 988 1.738350 GAGCAGCTACAGTAGTGACGA 59.262 52.381 9.42 0.00 0.00 4.20
1537 5208 1.185618 AGGCGAGTGAGTGGCTTACA 61.186 55.000 0.00 0.00 37.82 2.41
1556 5227 4.680237 CTGGACGCACGAGGCCAA 62.680 66.667 5.01 0.00 40.31 4.52
2132 5817 2.181584 GATGAGTGGGTCGTCGTCT 58.818 57.895 0.00 0.00 31.39 4.18
2180 5869 1.978080 ATCGCATGGCAAGGCAACA 60.978 52.632 13.78 0.00 41.41 3.33
2182 5871 2.886610 CATCGCATGGCAAGGCAA 59.113 55.556 13.78 0.00 30.73 4.52
2184 5873 1.727511 TTAGCATCGCATGGCAAGGC 61.728 55.000 4.59 4.59 0.00 4.35
2185 5874 0.956633 ATTAGCATCGCATGGCAAGG 59.043 50.000 0.00 0.00 0.00 3.61
2186 5875 3.902261 TTATTAGCATCGCATGGCAAG 57.098 42.857 0.00 0.00 0.00 4.01
2210 5901 2.068519 GTGTTGATGATGCGTGAGTCA 58.931 47.619 0.00 0.00 0.00 3.41
2323 6024 2.808906 TCCGATCTCTTGGAGACTGA 57.191 50.000 0.00 0.00 41.76 3.41
2387 6090 1.205657 GTCGAAGTCGCAACTCAACA 58.794 50.000 0.00 0.00 39.60 3.33
2397 6100 2.412112 GGGATCCCGTCGAAGTCG 59.588 66.667 17.02 0.00 39.05 4.18
2787 6494 5.228635 GCTCGCATTTGTTGACATAATTCAG 59.771 40.000 0.00 0.00 0.00 3.02
3029 6745 6.661805 CCTACCTTCTATCAGATTACTCCTCC 59.338 46.154 0.00 0.00 0.00 4.30
3033 6749 8.871629 TCATCCTACCTTCTATCAGATTACTC 57.128 38.462 0.00 0.00 0.00 2.59
3071 6792 5.845391 AGTAATCTTCTCCTTTCTCCTCG 57.155 43.478 0.00 0.00 0.00 4.63
3079 6800 9.660180 GAGTCATAAACAAGTAATCTTCTCCTT 57.340 33.333 0.00 0.00 0.00 3.36
3080 6801 8.261522 GGAGTCATAAACAAGTAATCTTCTCCT 58.738 37.037 0.00 0.00 33.38 3.69
3081 6802 8.261522 AGGAGTCATAAACAAGTAATCTTCTCC 58.738 37.037 0.00 0.00 34.88 3.71
3082 6803 9.308318 GAGGAGTCATAAACAAGTAATCTTCTC 57.692 37.037 0.00 0.00 0.00 2.87
3113 6834 3.785859 GTCCTCATCCCGGCAGCA 61.786 66.667 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.