AutoCloner

Multiple sequence alignment - TraesCS5D01G441500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G441500	chr5D	100.000	3473	0	0	1	3473	494080164	494076692	0.000000e+00	6414
1	TraesCS5D01G441500	chr5D	91.450	1731	107	20	776	2474	493912197	493913918	0.000000e+00	2338
2	TraesCS5D01G441500	chr5D	93.804	1162	72	0	1434	2595	494060016	494058855	0.000000e+00	1748
3	TraesCS5D01G441500	chr5D	94.131	869	40	6	2607	3473	493841269	493842128	0.000000e+00	1312
4	TraesCS5D01G441500	chr5D	82.687	1444	200	30	1018	2430	542106158	542107582	0.000000e+00	1236
5	TraesCS5D01G441500	chr5D	86.829	205	24	3	86	287	494067009	494067213	3.490000e-55	226
6	TraesCS5D01G441500	chr5D	86.735	196	23	3	95	287	493901514	493901319	7.550000e-52	215
7	TraesCS5D01G441500	chr5A	87.555	2515	249	43	1	2490	617098309	617095834	0.000000e+00	2852
8	TraesCS5D01G441500	chr5A	94.298	1859	92	6	720	2574	617123950	617122102	0.000000e+00	2833
9	TraesCS5D01G441500	chr5A	89.762	840	84	2	2088	2925	617111674	617110835	0.000000e+00	1074
10	TraesCS5D01G441500	chr5A	89.595	692	49	16	1	683	617125469	617124792	0.000000e+00	857
11	TraesCS5D01G441500	chr5A	90.305	557	43	4	2921	3473	617100786	617100237	0.000000e+00	719
12	TraesCS5D01G441500	chr5B	93.149	1810	103	9	837	2628	610282588	610280782	0.000000e+00	2636
13	TraesCS5D01G441500	chr5B	89.917	1805	139	20	699	2490	610108221	610106447	0.000000e+00	2285
14	TraesCS5D01G441500	chr5B	90.558	1684	137	15	819	2490	610206099	610204426	0.000000e+00	2209
15	TraesCS5D01G441500	chr5B	86.154	455	45	7	2779	3215	103226681	103227135	3.140000e-130	475
16	TraesCS5D01G441500	chr5B	84.752	282	34	8	393	670	610108559	610108283	1.230000e-69	274
17	TraesCS5D01G441500	chr5B	80.110	362	42	19	2	349	610109979	610109634	3.460000e-60	243
18	TraesCS5D01G441500	chr5B	82.128	235	32	10	439	669	610283700	610283472	3.540000e-45	193
19	TraesCS5D01G441500	chr4A	82.411	1427	205	29	1019	2416	626954573	626953164	0.000000e+00	1203
20	TraesCS5D01G441500	chr7B	87.674	576	55	6	2656	3215	600971169	600971744	0.000000e+00	656
21	TraesCS5D01G441500	chr3B	86.874	579	55	11	2656	3215	29102975	29103551	2.280000e-176	628
22	TraesCS5D01G441500	chr2B	86.159	578	62	9	2656	3215	504300161	504300738	2.960000e-170	608
23	TraesCS5D01G441500	chr2B	87.611	226	28	0	3217	3442	178682623	178682848	2.660000e-66	263
24	TraesCS5D01G441500	chr3D	85.739	582	56	12	2657	3215	309695433	309696010	1.070000e-164	590
25	TraesCS5D01G441500	chr3D	91.188	261	22	1	2658	2917	553518881	553518621	1.530000e-93	353
26	TraesCS5D01G441500	chr3D	91.188	261	22	1	2658	2917	553557207	553556947	1.530000e-93	353
27	TraesCS5D01G441500	chr4B	88.338	343	39	1	2656	2997	22172584	22172926	8.970000e-111	411
28	TraesCS5D01G441500	chr6B	89.062	256	28	0	3218	3473	170346756	170347011	5.590000e-83	318
29	TraesCS5D01G441500	chr2D	87.109	256	31	2	3218	3473	441590480	441590733	4.390000e-74	289
30	TraesCS5D01G441500	chr3A	85.603	257	35	1	3219	3473	336121340	336121084	5.710000e-68	268
31	TraesCS5D01G441500	chr1D	85.039	254	36	1	3220	3473	314724764	314725015	1.240000e-64	257
32	TraesCS5D01G441500	chr4D	85.141	249	37	0	3220	3468	433701156	433701404	4.450000e-64	255
33	TraesCS5D01G441500	chr1A	84.766	256	33	4	3220	3473	395194462	395194713	5.750000e-63	252

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G441500	chr5D	494076692	494080164	3472	True	6414.0	6414	100.000000	1	3473	1	chr5D.!!$R3	3472
1	TraesCS5D01G441500	chr5D	493912197	493913918	1721	False	2338.0	2338	91.450000	776	2474	1	chr5D.!!$F2	1698
2	TraesCS5D01G441500	chr5D	494058855	494060016	1161	True	1748.0	1748	93.804000	1434	2595	1	chr5D.!!$R2	1161
3	TraesCS5D01G441500	chr5D	493841269	493842128	859	False	1312.0	1312	94.131000	2607	3473	1	chr5D.!!$F1	866
4	TraesCS5D01G441500	chr5D	542106158	542107582	1424	False	1236.0	1236	82.687000	1018	2430	1	chr5D.!!$F4	1412
5	TraesCS5D01G441500	chr5A	617122102	617125469	3367	True	1845.0	2833	91.946500	1	2574	2	chr5A.!!$R3	2573
6	TraesCS5D01G441500	chr5A	617095834	617100786	4952	True	1785.5	2852	88.930000	1	3473	2	chr5A.!!$R2	3472
7	TraesCS5D01G441500	chr5A	617110835	617111674	839	True	1074.0	1074	89.762000	2088	2925	1	chr5A.!!$R1	837
8	TraesCS5D01G441500	chr5B	610204426	610206099	1673	True	2209.0	2209	90.558000	819	2490	1	chr5B.!!$R1	1671
9	TraesCS5D01G441500	chr5B	610280782	610283700	2918	True	1414.5	2636	87.638500	439	2628	2	chr5B.!!$R3	2189
10	TraesCS5D01G441500	chr5B	610106447	610109979	3532	True	934.0	2285	84.926333	2	2490	3	chr5B.!!$R2	2488
11	TraesCS5D01G441500	chr4A	626953164	626954573	1409	True	1203.0	1203	82.411000	1019	2416	1	chr4A.!!$R1	1397
12	TraesCS5D01G441500	chr7B	600971169	600971744	575	False	656.0	656	87.674000	2656	3215	1	chr7B.!!$F1	559
13	TraesCS5D01G441500	chr3B	29102975	29103551	576	False	628.0	628	86.874000	2656	3215	1	chr3B.!!$F1	559
14	TraesCS5D01G441500	chr2B	504300161	504300738	577	False	608.0	608	86.159000	2656	3215	1	chr2B.!!$F2	559
15	TraesCS5D01G441500	chr3D	309695433	309696010	577	False	590.0	590	85.739000	2657	3215	1	chr3D.!!$F1	558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
950	6016	0.464735	CTCGATCTCCTCCTCCACGT	60.465	60.0	0.0	0.0	0.0	4.49	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2654	7801	0.170561	GTAGCAGAGACGAAGCCGAA	59.829	55.0	0.0	0.0	39.5	4.3	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	2514	9.777297	AAAATAAAGATTTGCACAGGTAAATGT	57.223	25.926	0.00	0.00	39.08	2.71
56	2539	4.513442	TGTAACATCTATGGTCTTGGCAC	58.487	43.478	0.00	0.00	0.00	5.01
60	2543	3.201290	CATCTATGGTCTTGGCACAGAC	58.799	50.000	16.52	16.52	42.39	3.51
67	2550	2.427095	GGTCTTGGCACAGACAACTTTT	59.573	45.455	22.38	0.00	42.39	2.27
73	2556	5.181690	TGGCACAGACAACTTTTTATGTC	57.818	39.130	0.00	0.00	44.92	3.06
88	2571	1.274703	ATGTCGGGCATCTGAACCCT	61.275	55.000	14.96	0.00	44.63	4.34
120	2603	6.942005	AGGATTTTGTTTTTGATGGAATTCCC	59.058	34.615	21.90	7.89	34.29	3.97
156	2640	7.463431	TGGAAAACCAAGATAGTTAAGGCTAA	58.537	34.615	0.00	0.00	0.00	3.09
251	2737	6.348540	CCCAAAATCTACAAACTGCAGTACTC	60.349	42.308	22.01	0.00	0.00	2.59
293	2785	3.255642	TCCAAAAGCTTCCTAACATGTGC	59.744	43.478	0.00	0.00	0.00	4.57
361	2855	8.839310	AAGCTGATGGTTTGTCTACATATATC	57.161	34.615	0.00	0.00	0.00	1.63
374	3872	7.028361	GTCTACATATATCGTCCAAGCTTACC	58.972	42.308	0.00	0.00	0.00	2.85
437	3963	6.082338	CGATCTTTGAAGAAAATGACAGTGG	58.918	40.000	0.00	0.00	38.77	4.00
449	3975	5.852282	AATGACAGTGGCACTTTTTAAGT	57.148	34.783	19.43	11.77	44.06	2.24
481	4009	6.348498	ACAGTGAACATTGCTGTATATGCTA	58.652	36.000	0.00	0.00	41.12	3.49
488	4016	4.529109	TTGCTGTATATGCTATGCGGTA	57.471	40.909	0.00	0.00	0.00	4.02
490	4018	4.432712	TGCTGTATATGCTATGCGGTATG	58.567	43.478	0.00	0.00	0.00	2.39
500	4029	6.389830	TGCTATGCGGTATGAAAATGAATT	57.610	33.333	0.00	0.00	0.00	2.17
501	4030	6.207928	TGCTATGCGGTATGAAAATGAATTG	58.792	36.000	0.00	0.00	0.00	2.32
567	4098	6.407412	GGGAACATTGTCATGATAGAGAGTGA	60.407	42.308	0.00	0.00	34.11	3.41
602	4135	4.313277	TGAGAGAAACAGACAGTGACTG	57.687	45.455	19.10	19.10	40.68	3.51
615	4148	8.774586	ACAGACAGTGACTGATTTAATTTGTAC	58.225	33.333	25.94	0.00	38.55	2.90
616	4149	8.993121	CAGACAGTGACTGATTTAATTTGTACT	58.007	33.333	20.97	0.00	37.54	2.73
683	4231	5.106869	TGGATTTGTCAACGTTGTAGCATAC	60.107	40.000	26.47	16.75	43.42	2.39
684	4232	4.735662	TTTGTCAACGTTGTAGCATACC	57.264	40.909	26.47	7.39	42.12	2.73
686	4234	2.037381	TGTCAACGTTGTAGCATACCCA	59.963	45.455	26.47	1.47	42.12	4.51
687	4235	3.267483	GTCAACGTTGTAGCATACCCAT	58.733	45.455	26.47	0.00	42.12	4.00
688	4236	3.308866	GTCAACGTTGTAGCATACCCATC	59.691	47.826	26.47	0.00	42.12	3.51
689	4237	3.055747	TCAACGTTGTAGCATACCCATCA	60.056	43.478	26.47	0.26	42.12	3.07
690	4238	2.901249	ACGTTGTAGCATACCCATCAC	58.099	47.619	0.00	0.00	42.12	3.06
691	4239	2.235155	ACGTTGTAGCATACCCATCACA	59.765	45.455	0.00	0.00	42.12	3.58
692	4240	3.266636	CGTTGTAGCATACCCATCACAA	58.733	45.455	0.00	0.00	42.12	3.33
693	4241	3.687212	CGTTGTAGCATACCCATCACAAA	59.313	43.478	0.00	0.00	42.12	2.83
718	5071	2.238521	GTTCAAACCCTCATGCCAAGA	58.761	47.619	0.00	0.00	0.00	3.02
722	5075	3.010027	TCAAACCCTCATGCCAAGATACA	59.990	43.478	0.00	0.00	0.00	2.29
745	5098	5.828299	AAAATCTTGAACGTCACTCCAAA	57.172	34.783	0.00	0.00	0.00	3.28
746	5099	5.424121	AAATCTTGAACGTCACTCCAAAG	57.576	39.130	0.00	0.00	0.00	2.77
747	5100	3.536956	TCTTGAACGTCACTCCAAAGT	57.463	42.857	0.00	0.00	35.60	2.66
748	5101	3.454375	TCTTGAACGTCACTCCAAAGTC	58.546	45.455	0.00	0.00	31.71	3.01
749	5102	2.234300	TGAACGTCACTCCAAAGTCC	57.766	50.000	0.00	0.00	31.71	3.85
750	5103	1.483004	TGAACGTCACTCCAAAGTCCA	59.517	47.619	0.00	0.00	31.71	4.02
751	5104	2.093394	TGAACGTCACTCCAAAGTCCAA	60.093	45.455	0.00	0.00	31.71	3.53
805	5825	2.436824	GAAGCCACTTCTCCCGCC	60.437	66.667	0.08	0.00	37.49	6.13
832	5856	1.001974	CCTCGTTGGTTCCATCAGACA	59.998	52.381	0.00	0.00	0.00	3.41
888	5941	2.803030	TAGTCCTCTACACGGCTCTT	57.197	50.000	0.00	0.00	0.00	2.85
906	5959	3.655486	TCTTGTCTTAATCGCACCGAAA	58.345	40.909	0.00	0.00	39.99	3.46
950	6016	0.464735	CTCGATCTCCTCCTCCACGT	60.465	60.000	0.00	0.00	0.00	4.49
1389	6498	1.801178	GTTTCCGACAGCTTCTTCCAG	59.199	52.381	0.00	0.00	0.00	3.86
1887	6999	1.227853	ACTGACCAAGTTCGCACCC	60.228	57.895	0.00	0.00	34.57	4.61
1932	7044	3.441290	CTCGACCTCTCCGGCGTT	61.441	66.667	6.01	0.00	35.61	4.84
2254	7372	1.589196	GACTACGCGTCAGGCATCC	60.589	63.158	18.63	0.00	43.84	3.51
2352	7482	1.684734	GGCCAAGGACCTCGGTCTA	60.685	63.158	15.18	0.00	44.04	2.59
2526	7667	4.264172	TGGCTGACATAACAAGGGGTAAAT	60.264	41.667	0.00	0.00	0.00	1.40
2609	7755	3.669344	TTTCGGGCAGCTTTGGCG	61.669	61.111	0.00	0.00	44.37	5.69
2715	7862	3.319198	GGGAAGCCGGTGGAGTCA	61.319	66.667	1.90	0.00	0.00	3.41
2812	7959	1.153046	CTCGGGTGGTGGTTTGTGT	60.153	57.895	0.00	0.00	0.00	3.72
2843	7990	1.825474	GGTGATTCTCCCTCGACTTCA	59.175	52.381	0.00	0.00	0.00	3.02
2933	8081	1.794151	TTACGCCTCACCGTTCACGA	61.794	55.000	0.00	0.00	42.20	4.35
3009	8158	1.830847	GGCTTGGTGGTTTCCGGTT	60.831	57.895	0.00	0.00	0.00	4.44
3203	8375	4.336433	TCTGCTGGTTAAGAAATATGCAGC	59.664	41.667	0.00	0.00	44.11	5.25
3216	8388	8.171164	AGAAATATGCAGCTATCCTAAAAACC	57.829	34.615	0.00	0.00	0.00	3.27
3217	8389	6.901081	AATATGCAGCTATCCTAAAAACCC	57.099	37.500	0.00	0.00	0.00	4.11
3338	8510	4.056050	ACCGTACACTCTCACAATGTTTC	58.944	43.478	0.00	0.00	0.00	2.78
3351	8523	2.358322	ATGTTTCTTGGAACCCGTGT	57.642	45.000	0.00	0.00	0.00	4.49
3360	8532	2.906897	AACCCGTGTTGCAGCTGG	60.907	61.111	17.12	3.79	32.13	4.85
3384	8556	3.007614	TGTTAATCTATAGCCCGCTTCCC	59.992	47.826	0.00	0.00	0.00	3.97
3450	8622	4.224991	TGTTTAAACCTTATAGCCCGCT	57.775	40.909	15.59	0.00	0.00	5.52
3451	8623	3.942748	TGTTTAAACCTTATAGCCCGCTG	59.057	43.478	15.59	0.00	0.00	5.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	2514	4.469586	TCTGTGCCAAGACCATAGATGTTA	59.530	41.667	0.00	0.00	0.00	2.41
56	2539	3.252215	TGCCCGACATAAAAAGTTGTCTG	59.748	43.478	0.00	0.00	40.05	3.51
60	2543	4.155826	TCAGATGCCCGACATAAAAAGTTG	59.844	41.667	0.00	0.00	39.84	3.16
67	2550	1.134220	GGGTTCAGATGCCCGACATAA	60.134	52.381	0.00	0.00	39.84	1.90
88	2571	9.083422	TCCATCAAAAACAAAATCCTACATGTA	57.917	29.630	5.25	5.25	0.00	2.29
193	2678	1.039068	TTGGCACACCTGAAACCATG	58.961	50.000	0.00	0.00	39.29	3.66
337	2831	7.093354	CGATATATGTAGACAAACCATCAGCT	58.907	38.462	0.00	0.00	0.00	4.24
361	2855	2.004583	TCATTCGGTAAGCTTGGACG	57.995	50.000	9.86	10.86	0.00	4.79
397	3895	6.377996	TCAAAGATCGTCATCCAATGGAAATT	59.622	34.615	5.89	0.00	34.34	1.82
399	3897	5.252547	TCAAAGATCGTCATCCAATGGAAA	58.747	37.500	5.89	0.00	34.34	3.13
437	3963	7.913297	TCACTGTTATTGTGACTTAAAAAGTGC	59.087	33.333	0.00	0.00	43.03	4.40
449	3975	5.299028	ACAGCAATGTTCACTGTTATTGTGA	59.701	36.000	0.00	0.00	41.78	3.58
481	4009	5.273170	CGACAATTCATTTTCATACCGCAT	58.727	37.500	0.00	0.00	0.00	4.73
488	4016	4.096231	TCCATCGCGACAATTCATTTTCAT	59.904	37.500	12.93	0.00	0.00	2.57
490	4018	4.014847	TCCATCGCGACAATTCATTTTC	57.985	40.909	12.93	0.00	0.00	2.29
623	4156	5.547465	TGGTTCGGATGTACCATAATGATC	58.453	41.667	0.00	0.00	40.23	2.92
633	4171	2.627945	TCTGCAATGGTTCGGATGTAC	58.372	47.619	0.00	0.00	0.00	2.90
640	4178	2.159476	CCACTCAATCTGCAATGGTTCG	60.159	50.000	0.00	0.00	0.00	3.95
683	4231	2.008242	TGAACCCCTTTTGTGATGGG	57.992	50.000	0.00	0.00	44.03	4.00
684	4232	3.494223	GGTTTGAACCCCTTTTGTGATGG	60.494	47.826	1.32	0.00	43.43	3.51
718	5071	6.485313	TGGAGTGACGTTCAAGATTTTTGTAT	59.515	34.615	0.00	0.00	0.00	2.29
722	5075	5.828299	TTGGAGTGACGTTCAAGATTTTT	57.172	34.783	0.00	0.00	0.00	1.94
805	5825	1.002502	GAACCAACGAGGAAGGGGG	60.003	63.158	5.70	0.00	41.22	5.40
832	5856	3.002965	CGTAAAAGTTTGGGCTCTCGTTT	59.997	43.478	0.00	0.00	0.00	3.60
888	5941	3.034721	AGTTTCGGTGCGATTAAGACA	57.965	42.857	0.00	0.00	35.23	3.41
906	5959	2.105006	ATGCAGATCAGACGCAAAGT	57.895	45.000	0.00	0.00	39.48	2.66
950	6016	3.138798	GGAGAGTACTGCGGCCGA	61.139	66.667	33.48	13.59	0.00	5.54
1113	6219	2.363975	GGGCGTGGTGAGGATGGTA	61.364	63.158	0.00	0.00	0.00	3.25
1194	6300	3.087253	ATGTCGATGGCCGGGGAA	61.087	61.111	2.18	0.00	39.14	3.97
1371	6480	1.048601	ACTGGAAGAAGCTGTCGGAA	58.951	50.000	0.00	0.00	37.43	4.30
1887	6999	4.827087	AGCTGGTGCATCTCCGCG	62.827	66.667	0.00	0.00	42.74	6.46
1926	7038	1.489824	CCACACGAAGTTAACGCCG	59.510	57.895	17.04	17.04	41.61	6.46
1932	7044	1.067425	CCGATCACCCACACGAAGTTA	60.067	52.381	0.00	0.00	41.61	2.24
2052	7167	0.833287	GGCTTAGGACCAGCATCTGA	59.167	55.000	6.19	0.00	39.21	3.27
2062	7177	4.484872	GGCGGGGTGGCTTAGGAC	62.485	72.222	0.00	0.00	40.72	3.85
2226	7341	4.752879	GCGTAGTCCTTGGCGCCA	62.753	66.667	29.03	29.03	43.52	5.69
2254	7372	2.187946	GATCACCTCGTGGGCCTG	59.812	66.667	4.53	0.00	39.10	4.85
2352	7482	4.643387	ACCGCGCTCCTTGCCTTT	62.643	61.111	5.56	0.00	38.78	3.11
2526	7667	9.349713	CACCTCCATACTTTTATAATTTGCCTA	57.650	33.333	0.00	0.00	0.00	3.93
2595	7741	4.404654	GAACGCCAAAGCTGCCCG	62.405	66.667	0.00	0.00	36.60	6.13
2609	7755	6.515272	TGATCTTAATCAGCCAAAAGGAAC	57.485	37.500	0.00	0.00	36.98	3.62
2654	7801	0.170561	GTAGCAGAGACGAAGCCGAA	59.829	55.000	0.00	0.00	39.50	4.30
2715	7862	1.599047	CCCGAGAACTCCTGTGCAT	59.401	57.895	0.00	0.00	0.00	3.96
2812	7959	2.092753	GGAGAATCACCAGATCTGCCAA	60.093	50.000	17.76	4.48	36.25	4.52
2893	8041	2.279851	CTGTGGCACGTCGACCAA	60.280	61.111	13.77	0.00	37.79	3.67
2933	8081	2.361757	CTGAGTCGAAGATGAGCTCCAT	59.638	50.000	12.15	4.76	40.67	3.41
3050	8210	2.160417	CCTTAACGCAGAAAGAGCCAAG	59.840	50.000	0.00	0.00	0.00	3.61
3155	8326	5.391097	GGTTACAAACATAGCACATACGCAA	60.391	40.000	0.00	0.00	0.00	4.85
3203	8375	4.635699	ATAGCCGGGGTTTTTAGGATAG	57.364	45.455	3.09	0.00	0.00	2.08
3215	8387	1.002087	GACAACTCCATATAGCCGGGG	59.998	57.143	2.18	0.00	0.00	5.73
3216	8388	1.691976	TGACAACTCCATATAGCCGGG	59.308	52.381	2.18	0.00	0.00	5.73
3217	8389	3.244215	ACATGACAACTCCATATAGCCGG	60.244	47.826	0.00	0.00	0.00	6.13
3292	8464	6.531240	GTGGACCATGCATTAACAAAATAGTG	59.469	38.462	0.00	0.00	0.00	2.74
3297	8469	3.305676	CGGTGGACCATGCATTAACAAAA	60.306	43.478	0.00	0.00	35.14	2.44
3338	8510	1.654220	CTGCAACACGGGTTCCAAG	59.346	57.895	0.00	0.00	34.21	3.61
3360	8532	3.320673	AGCGGGCTATAGATTAACAGC	57.679	47.619	3.21	0.52	0.00	4.40
3361	8533	4.246458	GGAAGCGGGCTATAGATTAACAG	58.754	47.826	3.21	0.00	0.00	3.16
3384	8556	7.720957	TGGATGAGAGAGAAGAGAATAGAGAAG	59.279	40.741	0.00	0.00	0.00	2.85
3441	8613	3.577805	AAGGTAAAATCAGCGGGCTAT	57.422	42.857	0.00	0.00	0.00	2.97

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.