Multiple sequence alignment - TraesCS5D01G441200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G441200 chr5D 100.000 2582 0 0 1 2582 494040989 494043570 0.000000e+00 4769.0
1 TraesCS5D01G441200 chr5D 90.000 570 49 5 801 1369 494033067 494033629 0.000000e+00 730.0
2 TraesCS5D01G441200 chr5D 84.263 699 86 19 680 1370 493997156 493997838 0.000000e+00 660.0
3 TraesCS5D01G441200 chr5D 92.401 329 22 1 1029 1357 494052846 494053171 1.400000e-127 466.0
4 TraesCS5D01G441200 chr5D 81.623 419 49 21 147 547 362863858 362863450 3.210000e-84 322.0
5 TraesCS5D01G441200 chr5D 92.958 142 6 3 644 782 494031703 494031843 1.210000e-48 204.0
6 TraesCS5D01G441200 chr5B 89.241 790 64 11 597 1374 610082239 610081459 0.000000e+00 968.0
7 TraesCS5D01G441200 chr5B 89.660 764 58 8 611 1370 610023282 610022536 0.000000e+00 953.0
8 TraesCS5D01G441200 chr5B 92.015 526 36 4 848 1372 610007917 610007397 0.000000e+00 734.0
9 TraesCS5D01G441200 chr5B 83.286 706 96 17 680 1377 610086119 610085428 4.690000e-177 630.0
10 TraesCS5D01G441200 chr5B 84.335 632 70 19 1 616 610082890 610082272 2.210000e-165 592.0
11 TraesCS5D01G441200 chr5B 84.601 539 60 13 1 525 610060719 610060190 4.930000e-142 514.0
12 TraesCS5D01G441200 chr5B 84.073 383 45 11 168 544 559721515 559721887 3.160000e-94 355.0
13 TraesCS5D01G441200 chr5B 87.574 169 15 4 1 168 610010403 610010240 9.430000e-45 191.0
14 TraesCS5D01G441200 chr5B 78.302 318 49 14 616 919 609928211 609927900 1.220000e-43 187.0
15 TraesCS5D01G441200 chr5B 86.391 169 16 4 1 168 610023544 610023382 7.340000e-41 178.0
16 TraesCS5D01G441200 chr5B 91.597 119 8 2 739 856 610009770 610009653 2.060000e-36 163.0
17 TraesCS5D01G441200 chr5B 91.589 107 8 1 611 717 610010139 610010034 2.070000e-31 147.0
18 TraesCS5D01G441200 chr5B 93.023 43 1 1 541 583 610023395 610023355 7.710000e-06 62.1
19 TraesCS5D01G441200 chr5A 93.012 601 33 6 597 1196 616979539 616978947 0.000000e+00 869.0
20 TraesCS5D01G441200 chr5A 87.219 712 41 7 1389 2091 616978922 616978252 0.000000e+00 765.0
21 TraesCS5D01G441200 chr5A 84.878 615 79 11 763 1374 616982724 616982121 2.200000e-170 608.0
22 TraesCS5D01G441200 chr5A 81.953 676 82 24 686 1357 616914851 616914212 1.050000e-148 536.0
23 TraesCS5D01G441200 chr5A 92.401 329 22 1 1029 1357 616919899 616919574 1.400000e-127 466.0
24 TraesCS5D01G441200 chr5A 90.594 202 19 0 2081 2282 616977895 616977694 4.230000e-68 268.0
25 TraesCS5D01G441200 chr5A 91.005 189 5 1 2394 2582 616977463 616977287 7.140000e-61 244.0
26 TraesCS5D01G441200 chr5A 84.483 116 11 6 17 128 263655554 263655666 9.770000e-20 108.0
27 TraesCS5D01G441200 chr5A 98.361 61 1 0 2301 2361 616977521 616977461 9.770000e-20 108.0
28 TraesCS5D01G441200 chr2D 84.536 388 43 15 175 547 141189197 141189582 4.060000e-98 368.0
29 TraesCS5D01G441200 chr7D 84.238 387 41 16 176 547 246518099 246517718 2.440000e-95 359.0
30 TraesCS5D01G441200 chr7D 82.793 401 39 21 164 545 474682404 474682793 5.330000e-87 331.0
31 TraesCS5D01G441200 chr1A 82.353 391 52 13 169 546 546329821 546329435 8.910000e-85 324.0
32 TraesCS5D01G441200 chr1A 81.955 399 48 17 165 548 558980851 558981240 1.490000e-82 316.0
33 TraesCS5D01G441200 chr1B 80.645 124 21 3 7 128 671967590 671967468 2.740000e-15 93.5
34 TraesCS5D01G441200 chr3B 80.909 110 16 4 22 128 449313065 449313172 5.920000e-12 82.4
35 TraesCS5D01G441200 chr6B 80.180 111 18 4 21 128 529468409 529468300 2.130000e-11 80.5
36 TraesCS5D01G441200 chr7A 79.464 112 17 4 20 129 713323115 713323222 9.910000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G441200 chr5D 494040989 494043570 2581 False 4769.00 4769 100.000000 1 2582 1 chr5D.!!$F2 2581
1 TraesCS5D01G441200 chr5D 493997156 493997838 682 False 660.00 660 84.263000 680 1370 1 chr5D.!!$F1 690
2 TraesCS5D01G441200 chr5D 494031703 494033629 1926 False 467.00 730 91.479000 644 1369 2 chr5D.!!$F4 725
3 TraesCS5D01G441200 chr5B 610081459 610086119 4660 True 730.00 968 85.620667 1 1377 3 chr5B.!!$R5 1376
4 TraesCS5D01G441200 chr5B 610060190 610060719 529 True 514.00 514 84.601000 1 525 1 chr5B.!!$R2 524
5 TraesCS5D01G441200 chr5B 610022536 610023544 1008 True 397.70 953 89.691333 1 1370 3 chr5B.!!$R4 1369
6 TraesCS5D01G441200 chr5B 610007397 610010403 3006 True 308.75 734 90.693750 1 1372 4 chr5B.!!$R3 1371
7 TraesCS5D01G441200 chr5A 616914212 616914851 639 True 536.00 536 81.953000 686 1357 1 chr5A.!!$R1 671
8 TraesCS5D01G441200 chr5A 616977287 616982724 5437 True 477.00 869 90.844833 597 2582 6 chr5A.!!$R3 1985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 217 0.101219 GCATTTGCTCCCGGATGAAC 59.899 55.0 0.73 0.0 38.21 3.18 F
902 8159 0.108585 ACAAACACACGGCCTGATCT 59.891 50.0 0.00 0.0 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1382 8666 0.034186 CAGCAACCCAGGGAGCAATA 60.034 55.0 23.84 0.0 31.94 1.90 R
2203 9863 0.037590 TCCCTTGCTTGTACCGCATT 59.962 50.0 7.64 0.0 37.22 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.077300 CATCTTAGTTATGCAGAGGCCA 57.923 45.455 5.01 0.00 40.13 5.36
78 79 7.201644 CCAGGTGTCACTCATCATATTTTGTAC 60.202 40.741 2.35 0.00 0.00 2.90
80 81 6.823689 GGTGTCACTCATCATATTTTGTACCT 59.176 38.462 2.35 0.00 0.00 3.08
92 93 9.407380 TCATATTTTGTACCTGTTTGATGCTAT 57.593 29.630 0.00 0.00 0.00 2.97
209 215 4.240881 GCATTTGCTCCCGGATGA 57.759 55.556 0.73 0.00 38.21 2.92
210 216 2.492418 GCATTTGCTCCCGGATGAA 58.508 52.632 0.73 0.00 38.21 2.57
211 217 0.101219 GCATTTGCTCCCGGATGAAC 59.899 55.000 0.73 0.00 38.21 3.18
212 218 1.462616 CATTTGCTCCCGGATGAACA 58.537 50.000 0.73 0.00 0.00 3.18
213 219 1.402968 CATTTGCTCCCGGATGAACAG 59.597 52.381 0.73 0.00 0.00 3.16
214 220 0.400213 TTTGCTCCCGGATGAACAGT 59.600 50.000 0.73 0.00 0.00 3.55
215 221 1.271856 TTGCTCCCGGATGAACAGTA 58.728 50.000 0.73 0.00 0.00 2.74
216 222 0.535335 TGCTCCCGGATGAACAGTAC 59.465 55.000 0.73 0.00 0.00 2.73
217 223 0.179081 GCTCCCGGATGAACAGTACC 60.179 60.000 0.73 0.00 0.00 3.34
218 224 1.191535 CTCCCGGATGAACAGTACCA 58.808 55.000 0.73 0.00 0.00 3.25
219 225 0.899720 TCCCGGATGAACAGTACCAC 59.100 55.000 0.73 0.00 0.00 4.16
220 226 0.611200 CCCGGATGAACAGTACCACA 59.389 55.000 0.73 0.00 0.00 4.17
221 227 1.002659 CCCGGATGAACAGTACCACAA 59.997 52.381 0.73 0.00 0.00 3.33
222 228 2.551287 CCCGGATGAACAGTACCACAAA 60.551 50.000 0.73 0.00 0.00 2.83
223 229 3.142951 CCGGATGAACAGTACCACAAAA 58.857 45.455 0.00 0.00 0.00 2.44
224 230 3.566322 CCGGATGAACAGTACCACAAAAA 59.434 43.478 0.00 0.00 0.00 1.94
225 231 4.217550 CCGGATGAACAGTACCACAAAAAT 59.782 41.667 0.00 0.00 0.00 1.82
226 232 5.153513 CGGATGAACAGTACCACAAAAATG 58.846 41.667 0.00 0.00 0.00 2.32
273 279 8.815141 TCTGAATTTTTATGTGGATGTTTGTG 57.185 30.769 0.00 0.00 0.00 3.33
274 280 8.420222 TCTGAATTTTTATGTGGATGTTTGTGT 58.580 29.630 0.00 0.00 0.00 3.72
275 281 8.954950 TGAATTTTTATGTGGATGTTTGTGTT 57.045 26.923 0.00 0.00 0.00 3.32
279 285 8.864069 TTTTTATGTGGATGTTTGTGTTAGTG 57.136 30.769 0.00 0.00 0.00 2.74
280 286 7.575414 TTTATGTGGATGTTTGTGTTAGTGT 57.425 32.000 0.00 0.00 0.00 3.55
281 287 5.689383 ATGTGGATGTTTGTGTTAGTGTC 57.311 39.130 0.00 0.00 0.00 3.67
283 289 2.546368 TGGATGTTTGTGTTAGTGTCGC 59.454 45.455 0.00 0.00 0.00 5.19
284 290 2.546368 GGATGTTTGTGTTAGTGTCGCA 59.454 45.455 0.00 0.00 0.00 5.10
285 291 3.002862 GGATGTTTGTGTTAGTGTCGCAA 59.997 43.478 0.00 0.00 34.24 4.85
287 293 2.223157 TGTTTGTGTTAGTGTCGCAAGC 60.223 45.455 0.00 0.00 36.80 4.01
288 294 1.657822 TTGTGTTAGTGTCGCAAGCA 58.342 45.000 0.00 0.00 32.65 3.91
289 295 1.877637 TGTGTTAGTGTCGCAAGCAT 58.122 45.000 0.00 0.00 37.18 3.79
290 296 1.530720 TGTGTTAGTGTCGCAAGCATG 59.469 47.619 0.00 0.00 37.18 4.06
306 312 5.856126 AAGCATGCTTGACAATTTTCATG 57.144 34.783 31.49 0.00 34.60 3.07
308 314 3.482923 GCATGCTTGACAATTTTCATGCG 60.483 43.478 20.87 12.54 45.30 4.73
309 315 3.639716 TGCTTGACAATTTTCATGCGA 57.360 38.095 20.87 11.63 45.30 5.10
310 316 3.974912 TGCTTGACAATTTTCATGCGAA 58.025 36.364 20.87 7.76 45.30 4.70
312 318 4.989797 TGCTTGACAATTTTCATGCGAAAT 59.010 33.333 20.87 0.00 45.30 2.17
313 319 5.107414 TGCTTGACAATTTTCATGCGAAATG 60.107 36.000 20.87 2.31 45.30 2.32
314 320 5.669357 GCTTGACAATTTTCATGCGAAATGG 60.669 40.000 14.42 7.20 40.75 3.16
315 321 5.131594 TGACAATTTTCATGCGAAATGGA 57.868 34.783 12.84 0.00 40.75 3.41
316 322 5.162794 TGACAATTTTCATGCGAAATGGAG 58.837 37.500 12.84 7.46 40.75 3.86
324 330 1.725641 TGCGAAATGGAGCAGTAGTG 58.274 50.000 0.00 0.00 38.59 2.74
325 331 1.001974 TGCGAAATGGAGCAGTAGTGT 59.998 47.619 0.00 0.00 38.59 3.55
327 333 2.484264 GCGAAATGGAGCAGTAGTGTTT 59.516 45.455 0.00 0.00 0.00 2.83
329 335 3.181530 CGAAATGGAGCAGTAGTGTTTCG 60.182 47.826 14.65 14.65 39.92 3.46
330 336 3.402628 AATGGAGCAGTAGTGTTTCGT 57.597 42.857 0.00 0.00 0.00 3.85
332 338 1.335597 TGGAGCAGTAGTGTTTCGTCG 60.336 52.381 0.00 0.00 0.00 5.12
333 339 1.068748 GGAGCAGTAGTGTTTCGTCGA 60.069 52.381 0.00 0.00 0.00 4.20
335 341 2.594654 GAGCAGTAGTGTTTCGTCGATG 59.405 50.000 0.00 0.00 0.00 3.84
336 342 1.654105 GCAGTAGTGTTTCGTCGATGG 59.346 52.381 4.48 0.00 0.00 3.51
337 343 2.670229 GCAGTAGTGTTTCGTCGATGGA 60.670 50.000 4.48 0.00 0.00 3.41
338 344 3.571571 CAGTAGTGTTTCGTCGATGGAA 58.428 45.455 4.48 0.00 0.00 3.53
341 347 5.050634 CAGTAGTGTTTCGTCGATGGAAAAA 60.051 40.000 13.91 8.04 35.36 1.94
361 367 3.708563 AACAACGGTGACATTTTGAGG 57.291 42.857 7.88 0.00 0.00 3.86
362 368 2.650322 ACAACGGTGACATTTTGAGGT 58.350 42.857 7.88 0.00 0.00 3.85
363 369 2.616842 ACAACGGTGACATTTTGAGGTC 59.383 45.455 7.88 0.00 34.63 3.85
364 370 2.616376 CAACGGTGACATTTTGAGGTCA 59.384 45.455 0.00 0.00 41.44 4.02
371 377 5.199024 TGACATTTTGAGGTCACATTTGG 57.801 39.130 0.00 0.00 39.00 3.28
372 378 4.648762 TGACATTTTGAGGTCACATTTGGT 59.351 37.500 0.00 0.00 39.00 3.67
407 413 2.990066 TTTTTCACGGGCCAAAATGT 57.010 40.000 4.39 0.00 0.00 2.71
408 414 2.990066 TTTTCACGGGCCAAAATGTT 57.010 40.000 4.39 0.00 0.00 2.71
409 415 2.990066 TTTCACGGGCCAAAATGTTT 57.010 40.000 4.39 0.00 0.00 2.83
411 417 4.402056 TTTCACGGGCCAAAATGTTTAA 57.598 36.364 4.39 0.00 0.00 1.52
413 419 2.036089 TCACGGGCCAAAATGTTTAACC 59.964 45.455 4.39 0.00 0.00 2.85
414 420 2.036604 CACGGGCCAAAATGTTTAACCT 59.963 45.455 4.39 0.00 0.00 3.50
415 421 2.701423 ACGGGCCAAAATGTTTAACCTT 59.299 40.909 4.39 0.00 0.00 3.50
416 422 3.243941 ACGGGCCAAAATGTTTAACCTTC 60.244 43.478 4.39 0.00 0.00 3.46
417 423 3.006430 CGGGCCAAAATGTTTAACCTTCT 59.994 43.478 4.39 0.00 0.00 2.85
418 424 4.502431 CGGGCCAAAATGTTTAACCTTCTT 60.502 41.667 4.39 0.00 0.00 2.52
419 425 4.754618 GGGCCAAAATGTTTAACCTTCTTG 59.245 41.667 4.39 0.00 0.00 3.02
420 426 4.213270 GGCCAAAATGTTTAACCTTCTTGC 59.787 41.667 0.00 0.00 0.00 4.01
421 427 4.213270 GCCAAAATGTTTAACCTTCTTGCC 59.787 41.667 0.00 0.00 0.00 4.52
422 428 5.610398 CCAAAATGTTTAACCTTCTTGCCT 58.390 37.500 0.00 0.00 0.00 4.75
423 429 6.740122 GCCAAAATGTTTAACCTTCTTGCCTA 60.740 38.462 0.00 0.00 0.00 3.93
425 431 7.713073 CCAAAATGTTTAACCTTCTTGCCTAAA 59.287 33.333 0.00 0.00 0.00 1.85
426 432 9.103861 CAAAATGTTTAACCTTCTTGCCTAAAA 57.896 29.630 0.00 0.00 0.00 1.52
427 433 8.657074 AAATGTTTAACCTTCTTGCCTAAAAC 57.343 30.769 0.00 0.00 0.00 2.43
428 434 7.597288 ATGTTTAACCTTCTTGCCTAAAACT 57.403 32.000 0.00 0.00 0.00 2.66
429 435 7.412853 TGTTTAACCTTCTTGCCTAAAACTT 57.587 32.000 0.00 0.00 0.00 2.66
430 436 7.842982 TGTTTAACCTTCTTGCCTAAAACTTT 58.157 30.769 0.00 0.00 0.00 2.66
431 437 7.762159 TGTTTAACCTTCTTGCCTAAAACTTTG 59.238 33.333 0.00 0.00 0.00 2.77
432 438 4.322080 ACCTTCTTGCCTAAAACTTTGC 57.678 40.909 0.00 0.00 0.00 3.68
433 439 3.704061 ACCTTCTTGCCTAAAACTTTGCA 59.296 39.130 0.00 0.00 0.00 4.08
434 440 4.202151 ACCTTCTTGCCTAAAACTTTGCAG 60.202 41.667 0.00 0.00 34.81 4.41
435 441 4.301628 CTTCTTGCCTAAAACTTTGCAGG 58.698 43.478 0.00 0.00 34.81 4.85
436 442 3.295973 TCTTGCCTAAAACTTTGCAGGT 58.704 40.909 0.00 0.00 34.81 4.00
437 443 4.465886 TCTTGCCTAAAACTTTGCAGGTA 58.534 39.130 0.00 0.00 34.81 3.08
438 444 4.277423 TCTTGCCTAAAACTTTGCAGGTAC 59.723 41.667 0.00 0.00 34.81 3.34
439 445 2.888414 TGCCTAAAACTTTGCAGGTACC 59.112 45.455 2.73 2.73 0.00 3.34
440 446 2.888414 GCCTAAAACTTTGCAGGTACCA 59.112 45.455 15.94 0.00 0.00 3.25
441 447 3.509967 GCCTAAAACTTTGCAGGTACCAT 59.490 43.478 15.94 0.00 0.00 3.55
442 448 4.021456 GCCTAAAACTTTGCAGGTACCATT 60.021 41.667 15.94 0.00 0.00 3.16
443 449 5.510690 GCCTAAAACTTTGCAGGTACCATTT 60.511 40.000 15.94 4.76 0.00 2.32
444 450 6.294843 GCCTAAAACTTTGCAGGTACCATTTA 60.295 38.462 15.94 5.58 0.00 1.40
445 451 7.312899 CCTAAAACTTTGCAGGTACCATTTAG 58.687 38.462 15.94 13.20 0.00 1.85
446 452 6.969993 AAAACTTTGCAGGTACCATTTAGA 57.030 33.333 15.94 0.00 0.00 2.10
447 453 7.539034 AAAACTTTGCAGGTACCATTTAGAT 57.461 32.000 15.94 0.00 0.00 1.98
449 455 8.823220 AAACTTTGCAGGTACCATTTAGATAT 57.177 30.769 15.94 0.00 0.00 1.63
450 456 7.807977 ACTTTGCAGGTACCATTTAGATATG 57.192 36.000 15.94 0.81 0.00 1.78
452 458 7.499232 ACTTTGCAGGTACCATTTAGATATGAC 59.501 37.037 15.94 0.00 0.00 3.06
453 459 6.747414 TGCAGGTACCATTTAGATATGACT 57.253 37.500 15.94 0.00 0.00 3.41
454 460 7.849322 TGCAGGTACCATTTAGATATGACTA 57.151 36.000 15.94 0.00 0.00 2.59
455 461 8.435931 TGCAGGTACCATTTAGATATGACTAT 57.564 34.615 15.94 0.00 0.00 2.12
509 515 8.279103 TGACATTTCAAAAATTATTTTCCGTGC 58.721 29.630 3.23 0.00 36.62 5.34
510 516 7.287229 ACATTTCAAAAATTATTTTCCGTGCG 58.713 30.769 3.23 0.00 36.62 5.34
511 517 4.894798 TCAAAAATTATTTTCCGTGCGC 57.105 36.364 0.00 0.00 36.62 6.09
512 518 4.299155 TCAAAAATTATTTTCCGTGCGCA 58.701 34.783 5.66 5.66 36.62 6.09
514 520 2.559998 AATTATTTTCCGTGCGCAGG 57.440 45.000 22.66 22.66 0.00 4.85
515 521 1.745232 ATTATTTTCCGTGCGCAGGA 58.255 45.000 30.22 24.73 35.69 3.86
516 522 1.083489 TTATTTTCCGTGCGCAGGAG 58.917 50.000 30.22 19.62 39.22 3.69
517 523 1.366111 TATTTTCCGTGCGCAGGAGC 61.366 55.000 30.22 8.77 39.22 4.70
518 524 3.969710 TATTTTCCGTGCGCAGGAGCA 62.970 52.381 30.22 18.05 45.96 4.26
524 530 3.051479 TGCGCAGGAGCACATGTG 61.051 61.111 21.83 21.83 42.92 3.21
534 540 4.084265 CACATGTGCAGGAGCCAA 57.916 55.556 13.94 0.00 41.13 4.52
536 542 0.892755 CACATGTGCAGGAGCCAAAT 59.107 50.000 13.94 0.00 41.13 2.32
537 543 1.274167 CACATGTGCAGGAGCCAAATT 59.726 47.619 13.94 0.00 41.13 1.82
538 544 1.274167 ACATGTGCAGGAGCCAAATTG 59.726 47.619 0.00 0.00 41.13 2.32
540 546 0.178967 TGTGCAGGAGCCAAATTGGA 60.179 50.000 17.47 0.00 40.96 3.53
541 547 1.188863 GTGCAGGAGCCAAATTGGAT 58.811 50.000 17.47 10.02 39.95 3.41
542 548 1.551883 GTGCAGGAGCCAAATTGGATT 59.448 47.619 17.47 2.34 35.51 3.01
543 549 2.027837 GTGCAGGAGCCAAATTGGATTT 60.028 45.455 17.47 0.00 35.51 2.17
544 550 2.234414 TGCAGGAGCCAAATTGGATTTC 59.766 45.455 17.47 9.37 35.51 2.17
545 551 2.419159 GCAGGAGCCAAATTGGATTTCC 60.419 50.000 17.47 17.44 35.51 3.13
546 552 2.102578 AGGAGCCAAATTGGATTTCCG 58.897 47.619 17.47 0.00 35.51 4.30
548 554 0.536724 AGCCAAATTGGATTTCCGGC 59.463 50.000 17.47 0.00 40.96 6.13
550 556 1.194218 CCAAATTGGATTTCCGGCCT 58.806 50.000 6.04 0.00 40.96 5.19
551 557 1.136891 CCAAATTGGATTTCCGGCCTC 59.863 52.381 6.04 0.00 40.96 4.70
552 558 1.824230 CAAATTGGATTTCCGGCCTCA 59.176 47.619 0.00 0.00 39.43 3.86
553 559 2.230130 AATTGGATTTCCGGCCTCAA 57.770 45.000 0.00 0.00 39.43 3.02
554 560 2.230130 ATTGGATTTCCGGCCTCAAA 57.770 45.000 0.00 0.00 39.43 2.69
556 562 0.404040 TGGATTTCCGGCCTCAAAGT 59.596 50.000 0.00 0.00 39.43 2.66
557 563 1.631388 TGGATTTCCGGCCTCAAAGTA 59.369 47.619 0.00 0.00 39.43 2.24
558 564 2.241176 TGGATTTCCGGCCTCAAAGTAT 59.759 45.455 0.00 0.00 39.43 2.12
559 565 2.879026 GGATTTCCGGCCTCAAAGTATC 59.121 50.000 0.00 0.00 0.00 2.24
560 566 3.433740 GGATTTCCGGCCTCAAAGTATCT 60.434 47.826 0.00 0.00 0.00 1.98
561 567 4.202326 GGATTTCCGGCCTCAAAGTATCTA 60.202 45.833 0.00 0.00 0.00 1.98
562 568 5.513267 GGATTTCCGGCCTCAAAGTATCTAT 60.513 44.000 0.00 0.00 0.00 1.98
563 569 6.295688 GGATTTCCGGCCTCAAAGTATCTATA 60.296 42.308 0.00 0.00 0.00 1.31
564 570 5.464030 TTCCGGCCTCAAAGTATCTATAC 57.536 43.478 0.00 0.00 0.00 1.47
565 571 4.476297 TCCGGCCTCAAAGTATCTATACA 58.524 43.478 0.00 0.00 35.74 2.29
566 572 4.523173 TCCGGCCTCAAAGTATCTATACAG 59.477 45.833 0.00 0.00 35.74 2.74
567 573 4.281182 CCGGCCTCAAAGTATCTATACAGT 59.719 45.833 0.00 0.00 35.74 3.55
568 574 5.475909 CCGGCCTCAAAGTATCTATACAGTA 59.524 44.000 0.00 0.00 35.74 2.74
569 575 6.153000 CCGGCCTCAAAGTATCTATACAGTAT 59.847 42.308 0.00 0.00 35.74 2.12
570 576 7.251994 CGGCCTCAAAGTATCTATACAGTATC 58.748 42.308 0.00 0.00 35.74 2.24
571 577 7.094334 CGGCCTCAAAGTATCTATACAGTATCA 60.094 40.741 0.00 0.00 35.74 2.15
572 578 8.247562 GGCCTCAAAGTATCTATACAGTATCAG 58.752 40.741 0.00 0.00 35.74 2.90
573 579 9.015367 GCCTCAAAGTATCTATACAGTATCAGA 57.985 37.037 0.00 0.00 35.74 3.27
580 586 9.679661 AGTATCTATACAGTATCAGATCCTGTG 57.320 37.037 16.92 2.93 39.63 3.66
581 587 7.953005 ATCTATACAGTATCAGATCCTGTGG 57.047 40.000 16.92 8.43 39.63 4.17
582 588 6.853490 TCTATACAGTATCAGATCCTGTGGT 58.147 40.000 16.92 9.19 39.63 4.16
583 589 7.298374 TCTATACAGTATCAGATCCTGTGGTT 58.702 38.462 16.92 6.21 39.63 3.67
584 590 4.478206 ACAGTATCAGATCCTGTGGTTG 57.522 45.455 7.81 0.00 38.00 3.77
585 591 3.201290 CAGTATCAGATCCTGTGGTTGC 58.799 50.000 0.00 0.00 32.61 4.17
586 592 2.840038 AGTATCAGATCCTGTGGTTGCA 59.160 45.455 0.00 0.00 32.61 4.08
587 593 3.457380 AGTATCAGATCCTGTGGTTGCAT 59.543 43.478 0.00 0.00 32.61 3.96
588 594 2.885135 TCAGATCCTGTGGTTGCATT 57.115 45.000 0.00 0.00 32.61 3.56
589 595 2.439409 TCAGATCCTGTGGTTGCATTG 58.561 47.619 0.00 0.00 32.61 2.82
590 596 2.165167 CAGATCCTGTGGTTGCATTGT 58.835 47.619 0.00 0.00 0.00 2.71
592 598 2.161855 GATCCTGTGGTTGCATTGTGA 58.838 47.619 0.00 0.00 0.00 3.58
596 602 1.536766 CTGTGGTTGCATTGTGACGAT 59.463 47.619 0.00 0.00 0.00 3.73
597 603 2.741517 CTGTGGTTGCATTGTGACGATA 59.258 45.455 0.00 0.00 0.00 2.92
598 604 3.142174 TGTGGTTGCATTGTGACGATAA 58.858 40.909 0.00 0.00 0.00 1.75
600 606 3.058570 GTGGTTGCATTGTGACGATAACA 60.059 43.478 0.00 0.00 0.00 2.41
761 5055 6.299141 ACTACTGCTGGAAATCAGAGAAAAA 58.701 36.000 0.00 0.00 46.18 1.94
869 8118 9.444600 ACCGTTTATATAAAATCACACAACTCT 57.555 29.630 9.48 0.00 0.00 3.24
902 8159 0.108585 ACAAACACACGGCCTGATCT 59.891 50.000 0.00 0.00 0.00 2.75
938 8195 5.529014 GCATCTAGCTAGCTTAAAGCATC 57.471 43.478 24.88 2.93 41.66 3.91
956 8239 2.858787 TCCCCAACCCAAGAAAAAGT 57.141 45.000 0.00 0.00 0.00 2.66
1245 8529 4.631247 TGCCTCTGCAGCGCACTT 62.631 61.111 20.40 0.00 44.23 3.16
1296 8580 2.738521 ATCAACAAGACGCGCGCT 60.739 55.556 32.58 24.60 0.00 5.92
1360 8644 2.613506 AAGTGCAACGGCGGTAAGC 61.614 57.895 13.24 5.98 45.86 3.09
1382 8666 3.551890 CGCTCGACAGCATATTTACTGTT 59.448 43.478 4.71 0.00 46.82 3.16
1383 8667 4.738252 CGCTCGACAGCATATTTACTGTTA 59.262 41.667 4.71 0.00 46.82 2.41
1384 8668 5.402568 CGCTCGACAGCATATTTACTGTTAT 59.597 40.000 4.71 0.00 46.82 1.89
1387 8671 6.943981 TCGACAGCATATTTACTGTTATTGC 58.056 36.000 4.71 0.00 46.82 3.56
1397 8681 1.710809 ACTGTTATTGCTCCCTGGGTT 59.289 47.619 13.56 0.00 0.00 4.11
1399 8683 0.817654 GTTATTGCTCCCTGGGTTGC 59.182 55.000 20.68 20.68 0.00 4.17
1411 8695 1.671379 GGGTTGCTGACGAAGGACC 60.671 63.158 0.00 0.00 0.00 4.46
1437 8721 0.756442 TTTTGCTTGCAGCTGGAGGT 60.756 50.000 18.39 0.00 42.97 3.85
1500 8784 2.820037 GCGTACTTGCAGGGGAGC 60.820 66.667 0.00 0.00 34.15 4.70
1523 8807 1.356527 GGGTCGTCGTTACATGGCAC 61.357 60.000 0.00 0.00 0.00 5.01
1528 8812 4.514569 CGTTACATGGCACGGCGC 62.515 66.667 6.90 0.00 41.28 6.53
1588 8872 1.906824 TCCACCGTGTGAGGTCTCC 60.907 63.158 5.71 0.00 43.89 3.71
1616 8900 1.082690 GCCTTGTCTGAAGCACTAGC 58.917 55.000 0.00 0.00 42.56 3.42
1626 8910 2.047274 GCACTAGCTGGTTGGCGA 60.047 61.111 0.00 0.00 37.91 5.54
1627 8911 1.450312 GCACTAGCTGGTTGGCGAT 60.450 57.895 0.00 0.00 37.91 4.58
1628 8912 1.026718 GCACTAGCTGGTTGGCGATT 61.027 55.000 0.00 0.00 37.91 3.34
1629 8913 1.009829 CACTAGCTGGTTGGCGATTC 58.990 55.000 0.00 0.00 37.29 2.52
1632 8916 0.107703 TAGCTGGTTGGCGATTCAGG 60.108 55.000 0.00 0.00 37.29 3.86
1649 8933 2.025793 TCAGGTTGTGTTTCTTGGGTGA 60.026 45.455 0.00 0.00 0.00 4.02
1651 8935 4.141287 CAGGTTGTGTTTCTTGGGTGATA 58.859 43.478 0.00 0.00 0.00 2.15
1659 8943 6.432783 TGTGTTTCTTGGGTGATAGTATTTGG 59.567 38.462 0.00 0.00 0.00 3.28
1660 8944 5.949354 TGTTTCTTGGGTGATAGTATTTGGG 59.051 40.000 0.00 0.00 0.00 4.12
1670 8954 7.230712 GGGTGATAGTATTTGGGTTTCCTATTG 59.769 40.741 0.00 0.00 0.00 1.90
1671 8955 7.230712 GGTGATAGTATTTGGGTTTCCTATTGG 59.769 40.741 0.00 0.00 0.00 3.16
1674 8958 9.197306 GATAGTATTTGGGTTTCCTATTGGTTT 57.803 33.333 0.00 0.00 34.23 3.27
1677 8961 5.731957 TTTGGGTTTCCTATTGGTTTAGC 57.268 39.130 0.00 0.00 34.23 3.09
1678 8962 4.390129 TGGGTTTCCTATTGGTTTAGCA 57.610 40.909 0.00 0.00 34.23 3.49
1681 8965 5.186797 TGGGTTTCCTATTGGTTTAGCATTG 59.813 40.000 0.00 0.00 34.23 2.82
1692 8976 3.019564 GTTTAGCATTGATCTGGGCACT 58.980 45.455 0.00 0.00 0.00 4.40
1694 8978 0.395311 AGCATTGATCTGGGCACTGG 60.395 55.000 0.00 0.00 0.00 4.00
1695 8979 0.682209 GCATTGATCTGGGCACTGGT 60.682 55.000 0.00 0.00 0.00 4.00
1696 8980 1.100510 CATTGATCTGGGCACTGGTG 58.899 55.000 0.00 0.00 0.00 4.17
1697 8981 0.994247 ATTGATCTGGGCACTGGTGA 59.006 50.000 4.79 0.00 0.00 4.02
1698 8982 0.770499 TTGATCTGGGCACTGGTGAA 59.230 50.000 4.79 0.00 0.00 3.18
1699 8983 0.770499 TGATCTGGGCACTGGTGAAA 59.230 50.000 4.79 0.00 0.00 2.69
1700 8984 1.355381 TGATCTGGGCACTGGTGAAAT 59.645 47.619 4.79 0.00 0.00 2.17
1701 8985 1.747355 GATCTGGGCACTGGTGAAATG 59.253 52.381 4.79 0.00 0.00 2.32
1702 8986 0.770499 TCTGGGCACTGGTGAAATGA 59.230 50.000 4.79 0.00 0.00 2.57
1703 8987 1.355381 TCTGGGCACTGGTGAAATGAT 59.645 47.619 4.79 0.00 0.00 2.45
1704 8988 1.475280 CTGGGCACTGGTGAAATGATG 59.525 52.381 4.79 0.00 0.00 3.07
1705 8989 1.075212 TGGGCACTGGTGAAATGATGA 59.925 47.619 4.79 0.00 0.00 2.92
1706 8990 1.747355 GGGCACTGGTGAAATGATGAG 59.253 52.381 4.79 0.00 0.00 2.90
1707 8991 1.747355 GGCACTGGTGAAATGATGAGG 59.253 52.381 4.79 0.00 0.00 3.86
1708 8992 2.618816 GGCACTGGTGAAATGATGAGGA 60.619 50.000 4.79 0.00 0.00 3.71
1720 9004 3.175438 TGATGAGGAGTGAGGACTGAA 57.825 47.619 0.00 0.00 30.16 3.02
1728 9012 3.118811 GGAGTGAGGACTGAAGAGGAATG 60.119 52.174 0.00 0.00 30.16 2.67
1730 9014 3.906846 AGTGAGGACTGAAGAGGAATGTT 59.093 43.478 0.00 0.00 0.00 2.71
1738 9022 3.668447 TGAAGAGGAATGTTGAGTCAGC 58.332 45.455 0.00 0.00 0.00 4.26
1759 9043 3.537806 CGTCGTGTTCCACATTTGTAAC 58.462 45.455 0.00 0.00 33.40 2.50
1776 9060 9.379811 CATTTGTAACATTATTGGTTGTTTTGC 57.620 29.630 0.00 0.00 37.29 3.68
1777 9061 8.723942 TTTGTAACATTATTGGTTGTTTTGCT 57.276 26.923 0.00 0.00 37.29 3.91
1778 9062 7.706281 TGTAACATTATTGGTTGTTTTGCTG 57.294 32.000 0.00 0.00 37.29 4.41
1779 9063 5.671742 AACATTATTGGTTGTTTTGCTGC 57.328 34.783 0.00 0.00 32.28 5.25
1780 9064 4.701765 ACATTATTGGTTGTTTTGCTGCA 58.298 34.783 0.00 0.00 0.00 4.41
1802 9087 6.017852 TGCAGTCACAATAAAATCAACACGTA 60.018 34.615 0.00 0.00 0.00 3.57
1822 9107 8.567948 ACACGTAAAAGAAAGATCAACATCATT 58.432 29.630 0.00 0.00 0.00 2.57
1921 9214 0.694783 TAGTGGTGGTTGGTGTCCCA 60.695 55.000 0.00 0.00 39.65 4.37
1936 9229 2.907696 TGTCCCAGTCCTTTATTTCCGA 59.092 45.455 0.00 0.00 0.00 4.55
1948 9241 0.541063 ATTTCCGAAACCCACACCCC 60.541 55.000 0.00 0.00 0.00 4.95
1995 9288 4.394712 GCAGCAGGCCGGTGTAGT 62.395 66.667 21.80 0.00 45.25 2.73
1996 9289 2.347490 CAGCAGGCCGGTGTAGTT 59.653 61.111 15.62 0.00 38.36 2.24
1997 9290 1.594833 CAGCAGGCCGGTGTAGTTA 59.405 57.895 15.62 0.00 38.36 2.24
1998 9291 0.460284 CAGCAGGCCGGTGTAGTTAG 60.460 60.000 15.62 0.00 38.36 2.34
1999 9292 1.153429 GCAGGCCGGTGTAGTTAGG 60.153 63.158 1.90 0.00 0.00 2.69
2000 9293 1.520666 CAGGCCGGTGTAGTTAGGG 59.479 63.158 1.90 0.00 0.00 3.53
2001 9294 1.688187 AGGCCGGTGTAGTTAGGGG 60.688 63.158 1.90 0.00 0.00 4.79
2002 9295 1.686800 GGCCGGTGTAGTTAGGGGA 60.687 63.158 1.90 0.00 0.00 4.81
2003 9296 1.683418 GGCCGGTGTAGTTAGGGGAG 61.683 65.000 1.90 0.00 0.00 4.30
2004 9297 1.683418 GCCGGTGTAGTTAGGGGAGG 61.683 65.000 1.90 0.00 0.00 4.30
2005 9298 1.047034 CCGGTGTAGTTAGGGGAGGG 61.047 65.000 0.00 0.00 0.00 4.30
2006 9299 1.047034 CGGTGTAGTTAGGGGAGGGG 61.047 65.000 0.00 0.00 0.00 4.79
2007 9300 0.693430 GGTGTAGTTAGGGGAGGGGG 60.693 65.000 0.00 0.00 0.00 5.40
2053 9346 3.857854 GTGCTGCGGCGATCAGTG 61.858 66.667 12.98 0.00 42.25 3.66
2191 9851 2.286418 GGATGCGAGTTGAATTTAGGCG 60.286 50.000 0.00 0.00 0.00 5.52
2195 9855 0.377203 GAGTTGAATTTAGGCGGCGG 59.623 55.000 9.78 0.00 0.00 6.13
2197 9857 2.756025 TTGAATTTAGGCGGCGGCG 61.756 57.895 28.70 28.70 41.24 6.46
2212 9872 2.693285 GCGACGTCAATGCGGTAC 59.307 61.111 17.16 0.00 35.98 3.34
2213 9873 2.089936 GCGACGTCAATGCGGTACA 61.090 57.895 17.16 0.00 35.98 2.90
2231 9891 1.533994 AAGCAAGGGAAAGGGGTGC 60.534 57.895 0.00 0.00 35.41 5.01
2233 9893 2.676471 CAAGGGAAAGGGGTGCGG 60.676 66.667 0.00 0.00 0.00 5.69
2272 9932 2.357034 TGAGAAGCGGCGTTGGTC 60.357 61.111 9.37 3.57 0.00 4.02
2282 9942 2.466846 CGGCGTTGGTCGAGTAAATAT 58.533 47.619 0.00 0.00 46.20 1.28
2283 9943 3.631144 CGGCGTTGGTCGAGTAAATATA 58.369 45.455 0.00 0.00 46.20 0.86
2284 9944 3.667261 CGGCGTTGGTCGAGTAAATATAG 59.333 47.826 0.00 0.00 46.20 1.31
2285 9945 4.555313 CGGCGTTGGTCGAGTAAATATAGA 60.555 45.833 0.00 0.00 46.20 1.98
2286 9946 4.678742 GGCGTTGGTCGAGTAAATATAGAC 59.321 45.833 0.00 0.00 42.86 2.59
2290 9950 4.494350 GGTCGAGTAAATATAGACCGCA 57.506 45.455 0.00 0.00 41.38 5.69
2291 9951 4.474113 GGTCGAGTAAATATAGACCGCAG 58.526 47.826 0.00 0.00 41.38 5.18
2292 9952 3.913163 GTCGAGTAAATATAGACCGCAGC 59.087 47.826 0.00 0.00 0.00 5.25
2294 9954 3.914966 CGAGTAAATATAGACCGCAGCAG 59.085 47.826 0.00 0.00 0.00 4.24
2295 9955 4.320275 CGAGTAAATATAGACCGCAGCAGA 60.320 45.833 0.00 0.00 0.00 4.26
2296 9956 4.872664 AGTAAATATAGACCGCAGCAGAC 58.127 43.478 0.00 0.00 0.00 3.51
2297 9957 3.819564 AAATATAGACCGCAGCAGACA 57.180 42.857 0.00 0.00 0.00 3.41
2298 9958 4.342862 AAATATAGACCGCAGCAGACAT 57.657 40.909 0.00 0.00 0.00 3.06
2299 9959 2.800881 TATAGACCGCAGCAGACATG 57.199 50.000 0.00 0.00 0.00 3.21
2316 10130 5.356190 CAGACATGCATGAGGAGTAAACATT 59.644 40.000 32.75 5.45 0.00 2.71
2366 10180 4.505313 GCTGTAGGGCCAATATAAAAGC 57.495 45.455 6.18 0.00 0.00 3.51
2367 10181 3.255888 GCTGTAGGGCCAATATAAAAGCC 59.744 47.826 6.18 0.00 44.99 4.35
2376 10190 7.806409 GGCCAATATAAAAGCCATCAAAATT 57.194 32.000 0.00 0.00 45.07 1.82
2377 10191 8.900983 GGCCAATATAAAAGCCATCAAAATTA 57.099 30.769 0.00 0.00 45.07 1.40
2378 10192 9.506018 GGCCAATATAAAAGCCATCAAAATTAT 57.494 29.630 0.00 0.00 45.07 1.28
2385 10199 6.872585 AAAGCCATCAAAATTATTCCCTCA 57.127 33.333 0.00 0.00 0.00 3.86
2386 10200 5.859205 AGCCATCAAAATTATTCCCTCAC 57.141 39.130 0.00 0.00 0.00 3.51
2387 10201 5.271598 AGCCATCAAAATTATTCCCTCACA 58.728 37.500 0.00 0.00 0.00 3.58
2388 10202 5.901276 AGCCATCAAAATTATTCCCTCACAT 59.099 36.000 0.00 0.00 0.00 3.21
2389 10203 5.987347 GCCATCAAAATTATTCCCTCACATG 59.013 40.000 0.00 0.00 0.00 3.21
2390 10204 6.407299 GCCATCAAAATTATTCCCTCACATGT 60.407 38.462 0.00 0.00 0.00 3.21
2391 10205 7.558604 CCATCAAAATTATTCCCTCACATGTT 58.441 34.615 0.00 0.00 0.00 2.71
2392 10206 7.493320 CCATCAAAATTATTCCCTCACATGTTG 59.507 37.037 0.00 0.00 0.00 3.33
2458 10272 3.116174 GTTAGGATTGGGGTTCTCCTCT 58.884 50.000 0.00 0.00 39.99 3.69
2459 10273 2.367947 AGGATTGGGGTTCTCCTCTT 57.632 50.000 0.00 0.00 34.20 2.85
2460 10274 3.508952 AGGATTGGGGTTCTCCTCTTA 57.491 47.619 0.00 0.00 34.20 2.10
2461 10275 3.815507 AGGATTGGGGTTCTCCTCTTAA 58.184 45.455 0.00 0.00 34.20 1.85
2462 10276 3.523972 AGGATTGGGGTTCTCCTCTTAAC 59.476 47.826 0.00 0.00 34.20 2.01
2463 10277 3.523972 GGATTGGGGTTCTCCTCTTAACT 59.476 47.826 0.00 0.00 34.72 2.24
2464 10278 4.384318 GGATTGGGGTTCTCCTCTTAACTC 60.384 50.000 0.00 0.00 34.72 3.01
2465 10279 2.547990 TGGGGTTCTCCTCTTAACTCC 58.452 52.381 0.00 0.00 45.03 3.85
2466 10280 1.838715 GGGGTTCTCCTCTTAACTCCC 59.161 57.143 0.00 0.00 39.88 4.30
2467 10281 2.547990 GGGTTCTCCTCTTAACTCCCA 58.452 52.381 0.00 0.00 34.39 4.37
2468 10282 2.910977 GGGTTCTCCTCTTAACTCCCAA 59.089 50.000 0.00 0.00 34.39 4.12
2469 10283 3.055021 GGGTTCTCCTCTTAACTCCCAAG 60.055 52.174 0.00 0.00 34.39 3.61
2491 10305 7.554118 CCAAGAGCTTGTTGGAGAATAAGAATA 59.446 37.037 19.49 0.00 46.53 1.75
2577 10391 8.281893 ACAAATAACATTGCAATAAACACAAGC 58.718 29.630 12.53 0.00 33.52 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.144359 GCACATAACCAAAACTAACAGTCG 58.856 41.667 0.00 0.00 0.00 4.18
15 16 8.512138 ACTAAGATGCACATAACCAAAACTAAC 58.488 33.333 0.00 0.00 0.00 2.34
54 55 6.823689 GGTACAAAATATGATGAGTGACACCT 59.176 38.462 0.84 0.00 0.00 4.00
201 207 0.611200 TGTGGTACTGTTCATCCGGG 59.389 55.000 0.00 0.00 0.00 5.73
202 208 2.465860 TTGTGGTACTGTTCATCCGG 57.534 50.000 0.00 0.00 0.00 5.14
203 209 4.822036 TTTTTGTGGTACTGTTCATCCG 57.178 40.909 0.00 0.00 0.00 4.18
204 210 5.469479 CCATTTTTGTGGTACTGTTCATCC 58.531 41.667 0.00 0.00 34.46 3.51
247 253 9.258826 CACAAACATCCACATAAAAATTCAGAA 57.741 29.630 0.00 0.00 0.00 3.02
248 254 8.420222 ACACAAACATCCACATAAAAATTCAGA 58.580 29.630 0.00 0.00 0.00 3.27
249 255 8.592105 ACACAAACATCCACATAAAAATTCAG 57.408 30.769 0.00 0.00 0.00 3.02
250 256 8.954950 AACACAAACATCCACATAAAAATTCA 57.045 26.923 0.00 0.00 0.00 2.57
253 259 9.474920 CACTAACACAAACATCCACATAAAAAT 57.525 29.630 0.00 0.00 0.00 1.82
256 262 7.519168 CGACACTAACACAAACATCCACATAAA 60.519 37.037 0.00 0.00 0.00 1.40
257 263 6.073494 CGACACTAACACAAACATCCACATAA 60.073 38.462 0.00 0.00 0.00 1.90
258 264 5.407084 CGACACTAACACAAACATCCACATA 59.593 40.000 0.00 0.00 0.00 2.29
260 266 3.558006 CGACACTAACACAAACATCCACA 59.442 43.478 0.00 0.00 0.00 4.17
261 267 3.606153 GCGACACTAACACAAACATCCAC 60.606 47.826 0.00 0.00 0.00 4.02
262 268 2.546368 GCGACACTAACACAAACATCCA 59.454 45.455 0.00 0.00 0.00 3.41
263 269 2.546368 TGCGACACTAACACAAACATCC 59.454 45.455 0.00 0.00 0.00 3.51
266 272 2.223157 GCTTGCGACACTAACACAAACA 60.223 45.455 0.00 0.00 0.00 2.83
267 273 2.223157 TGCTTGCGACACTAACACAAAC 60.223 45.455 0.00 0.00 0.00 2.93
269 275 1.657822 TGCTTGCGACACTAACACAA 58.342 45.000 0.00 0.00 0.00 3.33
270 276 1.530720 CATGCTTGCGACACTAACACA 59.469 47.619 0.00 0.00 0.00 3.72
271 277 1.725931 GCATGCTTGCGACACTAACAC 60.726 52.381 11.37 0.00 39.49 3.32
273 279 3.296516 GCATGCTTGCGACACTAAC 57.703 52.632 11.37 0.00 39.49 2.34
284 290 5.856126 CATGAAAATTGTCAAGCATGCTT 57.144 34.783 27.21 27.21 36.60 3.91
287 293 3.921630 TCGCATGAAAATTGTCAAGCATG 59.078 39.130 22.09 9.11 41.23 4.06
288 294 4.177165 TCGCATGAAAATTGTCAAGCAT 57.823 36.364 22.09 0.00 41.23 3.79
289 295 3.639716 TCGCATGAAAATTGTCAAGCA 57.360 38.095 22.09 9.42 41.23 3.91
290 296 4.970472 TTTCGCATGAAAATTGTCAAGC 57.030 36.364 14.54 14.54 41.02 4.01
291 297 5.634439 TCCATTTCGCATGAAAATTGTCAAG 59.366 36.000 1.55 0.00 46.53 3.02
293 299 5.131594 TCCATTTCGCATGAAAATTGTCA 57.868 34.783 0.00 0.00 46.53 3.58
295 301 3.928375 GCTCCATTTCGCATGAAAATTGT 59.072 39.130 0.00 0.00 46.53 2.71
296 302 3.927758 TGCTCCATTTCGCATGAAAATTG 59.072 39.130 0.00 0.00 46.53 2.32
299 305 2.557924 ACTGCTCCATTTCGCATGAAAA 59.442 40.909 0.00 0.00 46.53 2.29
301 307 1.825090 ACTGCTCCATTTCGCATGAA 58.175 45.000 0.00 0.00 35.32 2.57
302 308 2.093500 ACTACTGCTCCATTTCGCATGA 60.093 45.455 0.00 0.00 35.32 3.07
303 309 2.031314 CACTACTGCTCCATTTCGCATG 59.969 50.000 0.00 0.00 35.32 4.06
304 310 2.283298 CACTACTGCTCCATTTCGCAT 58.717 47.619 0.00 0.00 35.32 4.73
305 311 1.001974 ACACTACTGCTCCATTTCGCA 59.998 47.619 0.00 0.00 34.54 5.10
306 312 1.726853 ACACTACTGCTCCATTTCGC 58.273 50.000 0.00 0.00 0.00 4.70
308 314 3.746492 ACGAAACACTACTGCTCCATTTC 59.254 43.478 0.00 0.00 0.00 2.17
309 315 3.740115 ACGAAACACTACTGCTCCATTT 58.260 40.909 0.00 0.00 0.00 2.32
310 316 3.326747 GACGAAACACTACTGCTCCATT 58.673 45.455 0.00 0.00 0.00 3.16
312 318 1.335597 CGACGAAACACTACTGCTCCA 60.336 52.381 0.00 0.00 0.00 3.86
313 319 1.068748 TCGACGAAACACTACTGCTCC 60.069 52.381 0.00 0.00 0.00 4.70
314 320 2.327081 TCGACGAAACACTACTGCTC 57.673 50.000 0.00 0.00 0.00 4.26
315 321 2.596452 CATCGACGAAACACTACTGCT 58.404 47.619 0.00 0.00 0.00 4.24
316 322 1.654105 CCATCGACGAAACACTACTGC 59.346 52.381 0.00 0.00 0.00 4.40
318 324 3.928727 TTCCATCGACGAAACACTACT 57.071 42.857 0.00 0.00 0.00 2.57
319 325 4.977741 TTTTCCATCGACGAAACACTAC 57.022 40.909 0.00 0.00 0.00 2.73
338 344 4.867608 CCTCAAAATGTCACCGTTGTTTTT 59.132 37.500 0.00 0.00 0.00 1.94
341 347 3.020984 ACCTCAAAATGTCACCGTTGTT 58.979 40.909 0.00 0.00 0.00 2.83
343 349 2.616376 TGACCTCAAAATGTCACCGTTG 59.384 45.455 0.00 0.00 36.62 4.10
349 355 4.648762 ACCAAATGTGACCTCAAAATGTCA 59.351 37.500 0.00 0.00 39.08 3.58
350 356 5.200368 ACCAAATGTGACCTCAAAATGTC 57.800 39.130 0.00 0.00 0.00 3.06
388 394 2.990066 ACATTTTGGCCCGTGAAAAA 57.010 40.000 0.00 0.00 0.00 1.94
389 395 2.990066 AACATTTTGGCCCGTGAAAA 57.010 40.000 0.00 0.00 0.00 2.29
390 396 2.990066 AAACATTTTGGCCCGTGAAA 57.010 40.000 0.00 0.00 0.00 2.69
391 397 3.492829 GGTTAAACATTTTGGCCCGTGAA 60.493 43.478 0.00 0.00 0.00 3.18
396 402 4.617253 AGAAGGTTAAACATTTTGGCCC 57.383 40.909 0.00 0.00 0.00 5.80
397 403 4.213270 GCAAGAAGGTTAAACATTTTGGCC 59.787 41.667 0.00 0.00 0.00 5.36
399 405 5.610398 AGGCAAGAAGGTTAAACATTTTGG 58.390 37.500 1.80 0.00 0.00 3.28
403 409 8.018537 AGTTTTAGGCAAGAAGGTTAAACATT 57.981 30.769 0.00 0.00 0.00 2.71
404 410 7.597288 AGTTTTAGGCAAGAAGGTTAAACAT 57.403 32.000 0.00 0.00 0.00 2.71
405 411 7.412853 AAGTTTTAGGCAAGAAGGTTAAACA 57.587 32.000 0.00 0.00 0.00 2.83
406 412 7.254319 GCAAAGTTTTAGGCAAGAAGGTTAAAC 60.254 37.037 0.00 0.00 0.00 2.01
407 413 6.759356 GCAAAGTTTTAGGCAAGAAGGTTAAA 59.241 34.615 0.00 0.00 0.00 1.52
408 414 6.127310 TGCAAAGTTTTAGGCAAGAAGGTTAA 60.127 34.615 0.00 0.00 32.54 2.01
409 415 5.361285 TGCAAAGTTTTAGGCAAGAAGGTTA 59.639 36.000 0.00 0.00 32.54 2.85
411 417 3.704061 TGCAAAGTTTTAGGCAAGAAGGT 59.296 39.130 0.00 0.00 32.54 3.50
413 419 4.202151 ACCTGCAAAGTTTTAGGCAAGAAG 60.202 41.667 13.25 1.71 35.59 2.85
414 420 3.704061 ACCTGCAAAGTTTTAGGCAAGAA 59.296 39.130 13.25 0.00 35.59 2.52
415 421 3.295973 ACCTGCAAAGTTTTAGGCAAGA 58.704 40.909 13.25 0.00 35.59 3.02
416 422 3.733443 ACCTGCAAAGTTTTAGGCAAG 57.267 42.857 13.25 4.98 35.59 4.01
417 423 3.319689 GGTACCTGCAAAGTTTTAGGCAA 59.680 43.478 4.06 2.77 35.59 4.52
418 424 2.888414 GGTACCTGCAAAGTTTTAGGCA 59.112 45.455 4.06 7.13 33.57 4.75
419 425 2.888414 TGGTACCTGCAAAGTTTTAGGC 59.112 45.455 14.36 3.15 33.57 3.93
420 426 5.722021 AATGGTACCTGCAAAGTTTTAGG 57.278 39.130 14.36 12.17 36.39 2.69
421 427 8.106247 TCTAAATGGTACCTGCAAAGTTTTAG 57.894 34.615 14.36 12.06 0.00 1.85
422 428 8.644374 ATCTAAATGGTACCTGCAAAGTTTTA 57.356 30.769 14.36 4.23 0.00 1.52
423 429 6.969993 TCTAAATGGTACCTGCAAAGTTTT 57.030 33.333 14.36 3.35 0.00 2.43
425 431 8.052748 TCATATCTAAATGGTACCTGCAAAGTT 58.947 33.333 14.36 0.00 0.00 2.66
426 432 7.499232 GTCATATCTAAATGGTACCTGCAAAGT 59.501 37.037 14.36 0.00 0.00 2.66
427 433 7.716998 AGTCATATCTAAATGGTACCTGCAAAG 59.283 37.037 14.36 4.63 0.00 2.77
428 434 7.573710 AGTCATATCTAAATGGTACCTGCAAA 58.426 34.615 14.36 0.00 0.00 3.68
429 435 7.136822 AGTCATATCTAAATGGTACCTGCAA 57.863 36.000 14.36 0.00 0.00 4.08
430 436 6.747414 AGTCATATCTAAATGGTACCTGCA 57.253 37.500 14.36 0.00 0.00 4.41
483 489 8.279103 GCACGGAAAATAATTTTTGAAATGTCA 58.721 29.630 0.00 0.00 35.20 3.58
486 492 6.246125 GCGCACGGAAAATAATTTTTGAAATG 59.754 34.615 0.30 0.00 35.20 2.32
488 494 5.234329 TGCGCACGGAAAATAATTTTTGAAA 59.766 32.000 5.66 0.00 35.20 2.69
489 495 4.745125 TGCGCACGGAAAATAATTTTTGAA 59.255 33.333 5.66 0.00 35.20 2.69
490 496 4.299155 TGCGCACGGAAAATAATTTTTGA 58.701 34.783 5.66 0.00 35.20 2.69
491 497 4.434067 CCTGCGCACGGAAAATAATTTTTG 60.434 41.667 17.75 0.00 35.20 2.44
492 498 3.677596 CCTGCGCACGGAAAATAATTTTT 59.322 39.130 17.75 0.00 37.75 1.94
493 499 3.057174 TCCTGCGCACGGAAAATAATTTT 60.057 39.130 21.42 0.00 35.12 1.82
494 500 2.490115 TCCTGCGCACGGAAAATAATTT 59.510 40.909 21.42 0.00 0.00 1.82
496 502 1.670811 CTCCTGCGCACGGAAAATAAT 59.329 47.619 23.02 0.00 0.00 1.28
497 503 1.083489 CTCCTGCGCACGGAAAATAA 58.917 50.000 23.02 6.37 0.00 1.40
498 504 1.366111 GCTCCTGCGCACGGAAAATA 61.366 55.000 23.02 6.93 0.00 1.40
501 507 4.617520 TGCTCCTGCGCACGGAAA 62.618 61.111 23.02 14.71 43.34 3.13
517 523 0.892755 ATTTGGCTCCTGCACATGTG 59.107 50.000 21.83 21.83 41.91 3.21
518 524 1.274167 CAATTTGGCTCCTGCACATGT 59.726 47.619 0.00 0.00 41.91 3.21
519 525 1.404986 CCAATTTGGCTCCTGCACATG 60.405 52.381 1.71 0.00 41.91 3.21
520 526 0.899720 CCAATTTGGCTCCTGCACAT 59.100 50.000 1.71 0.00 41.91 3.21
523 529 1.941377 AATCCAATTTGGCTCCTGCA 58.059 45.000 10.76 0.00 41.91 4.41
524 530 2.419159 GGAAATCCAATTTGGCTCCTGC 60.419 50.000 10.76 0.00 37.47 4.85
526 532 2.102578 CGGAAATCCAATTTGGCTCCT 58.897 47.619 20.04 4.85 37.47 3.69
527 533 1.136891 CCGGAAATCCAATTTGGCTCC 59.863 52.381 10.76 13.85 37.47 4.70
528 534 1.471501 GCCGGAAATCCAATTTGGCTC 60.472 52.381 5.05 6.95 37.95 4.70
530 536 0.461870 GGCCGGAAATCCAATTTGGC 60.462 55.000 5.05 6.73 39.37 4.52
531 537 1.136891 GAGGCCGGAAATCCAATTTGG 59.863 52.381 5.05 9.28 39.43 3.28
532 538 1.824230 TGAGGCCGGAAATCCAATTTG 59.176 47.619 5.05 0.00 35.14 2.32
533 539 2.230130 TGAGGCCGGAAATCCAATTT 57.770 45.000 5.05 0.00 35.14 1.82
534 540 2.230130 TTGAGGCCGGAAATCCAATT 57.770 45.000 5.05 0.00 35.14 2.32
536 542 1.203001 ACTTTGAGGCCGGAAATCCAA 60.203 47.619 5.05 0.00 35.14 3.53
537 543 0.404040 ACTTTGAGGCCGGAAATCCA 59.596 50.000 5.05 0.00 35.14 3.41
538 544 2.413310 TACTTTGAGGCCGGAAATCC 57.587 50.000 5.05 0.00 0.00 3.01
540 546 3.933861 AGATACTTTGAGGCCGGAAAT 57.066 42.857 5.05 0.00 0.00 2.17
541 547 5.364446 TGTATAGATACTTTGAGGCCGGAAA 59.636 40.000 5.05 0.00 34.41 3.13
542 548 4.897076 TGTATAGATACTTTGAGGCCGGAA 59.103 41.667 5.05 0.00 34.41 4.30
543 549 4.476297 TGTATAGATACTTTGAGGCCGGA 58.524 43.478 5.05 0.00 34.41 5.14
544 550 4.281182 ACTGTATAGATACTTTGAGGCCGG 59.719 45.833 0.00 0.00 34.41 6.13
545 551 5.455056 ACTGTATAGATACTTTGAGGCCG 57.545 43.478 0.00 0.00 34.41 6.13
546 552 8.123639 TGATACTGTATAGATACTTTGAGGCC 57.876 38.462 0.00 0.00 34.41 5.19
564 570 3.201290 GCAACCACAGGATCTGATACTG 58.799 50.000 24.94 24.94 46.96 2.74
565 571 2.840038 TGCAACCACAGGATCTGATACT 59.160 45.455 0.00 0.00 35.18 2.12
566 572 3.266510 TGCAACCACAGGATCTGATAC 57.733 47.619 1.59 0.00 35.18 2.24
567 573 4.201657 CAATGCAACCACAGGATCTGATA 58.798 43.478 0.00 0.00 35.18 2.15
568 574 3.021695 CAATGCAACCACAGGATCTGAT 58.978 45.455 0.00 0.00 35.18 2.90
569 575 2.224843 ACAATGCAACCACAGGATCTGA 60.225 45.455 0.00 0.00 35.18 3.27
570 576 2.094906 CACAATGCAACCACAGGATCTG 60.095 50.000 0.00 0.00 37.52 2.90
571 577 2.165167 CACAATGCAACCACAGGATCT 58.835 47.619 0.00 0.00 0.00 2.75
572 578 2.095059 GTCACAATGCAACCACAGGATC 60.095 50.000 0.00 0.00 0.00 3.36
573 579 1.888512 GTCACAATGCAACCACAGGAT 59.111 47.619 0.00 0.00 0.00 3.24
574 580 1.317613 GTCACAATGCAACCACAGGA 58.682 50.000 0.00 0.00 0.00 3.86
576 582 0.943673 TCGTCACAATGCAACCACAG 59.056 50.000 0.00 0.00 0.00 3.66
577 583 1.603456 ATCGTCACAATGCAACCACA 58.397 45.000 0.00 0.00 0.00 4.17
578 584 3.058570 TGTTATCGTCACAATGCAACCAC 60.059 43.478 0.00 0.00 0.00 4.16
579 585 3.142174 TGTTATCGTCACAATGCAACCA 58.858 40.909 0.00 0.00 0.00 3.67
580 586 3.822594 TGTTATCGTCACAATGCAACC 57.177 42.857 0.00 0.00 0.00 3.77
581 587 5.387342 GCTTTTGTTATCGTCACAATGCAAC 60.387 40.000 0.00 0.00 35.65 4.17
582 588 4.679197 GCTTTTGTTATCGTCACAATGCAA 59.321 37.500 0.00 0.00 35.65 4.08
583 589 4.225984 GCTTTTGTTATCGTCACAATGCA 58.774 39.130 0.00 0.00 35.65 3.96
584 590 4.225984 TGCTTTTGTTATCGTCACAATGC 58.774 39.130 11.58 11.58 34.13 3.56
585 591 5.914635 ACTTGCTTTTGTTATCGTCACAATG 59.085 36.000 0.00 0.00 34.13 2.82
586 592 6.072112 ACTTGCTTTTGTTATCGTCACAAT 57.928 33.333 0.00 0.00 34.13 2.71
587 593 5.493133 ACTTGCTTTTGTTATCGTCACAA 57.507 34.783 0.00 0.00 32.16 3.33
588 594 5.493133 AACTTGCTTTTGTTATCGTCACA 57.507 34.783 0.00 0.00 0.00 3.58
589 595 5.849604 GGTAACTTGCTTTTGTTATCGTCAC 59.150 40.000 0.00 0.00 32.32 3.67
590 596 5.333492 CGGTAACTTGCTTTTGTTATCGTCA 60.333 40.000 9.48 0.00 43.81 4.35
592 598 5.025986 CGGTAACTTGCTTTTGTTATCGT 57.974 39.130 9.48 0.00 43.81 3.73
596 602 4.634883 TGTCACGGTAACTTGCTTTTGTTA 59.365 37.500 0.00 0.00 35.42 2.41
597 603 3.440872 TGTCACGGTAACTTGCTTTTGTT 59.559 39.130 0.00 0.00 35.42 2.83
598 604 3.011119 TGTCACGGTAACTTGCTTTTGT 58.989 40.909 0.00 0.00 35.42 2.83
600 606 3.275999 AGTGTCACGGTAACTTGCTTTT 58.724 40.909 0.00 0.00 35.42 2.27
731 5025 4.933330 TGATTTCCAGCAGTAGTCGTATC 58.067 43.478 0.00 0.00 0.00 2.24
761 5055 4.853924 ACTCTTGGCACGAAATGATTTT 57.146 36.364 0.00 0.00 0.00 1.82
869 8118 5.164954 GTGTGTTTGTGCTTTTGACCTTAA 58.835 37.500 0.00 0.00 0.00 1.85
870 8119 4.673061 CGTGTGTTTGTGCTTTTGACCTTA 60.673 41.667 0.00 0.00 0.00 2.69
872 8121 2.415357 CGTGTGTTTGTGCTTTTGACCT 60.415 45.455 0.00 0.00 0.00 3.85
902 8159 0.674581 AGATGCTGCTTGCTTACGCA 60.675 50.000 0.00 0.00 46.24 5.24
925 8182 2.357777 GGGTTGGGGATGCTTTAAGCTA 60.358 50.000 18.20 5.12 42.97 3.32
926 8183 1.619704 GGGTTGGGGATGCTTTAAGCT 60.620 52.381 18.20 3.65 42.97 3.74
927 8184 0.824109 GGGTTGGGGATGCTTTAAGC 59.176 55.000 10.38 10.38 42.82 3.09
928 8185 2.230130 TGGGTTGGGGATGCTTTAAG 57.770 50.000 0.00 0.00 0.00 1.85
929 8186 2.110899 TCTTGGGTTGGGGATGCTTTAA 59.889 45.455 0.00 0.00 0.00 1.52
930 8187 1.713647 TCTTGGGTTGGGGATGCTTTA 59.286 47.619 0.00 0.00 0.00 1.85
931 8188 0.486879 TCTTGGGTTGGGGATGCTTT 59.513 50.000 0.00 0.00 0.00 3.51
932 8189 0.486879 TTCTTGGGTTGGGGATGCTT 59.513 50.000 0.00 0.00 0.00 3.91
933 8190 0.486879 TTTCTTGGGTTGGGGATGCT 59.513 50.000 0.00 0.00 0.00 3.79
934 8191 1.347062 TTTTCTTGGGTTGGGGATGC 58.653 50.000 0.00 0.00 0.00 3.91
935 8192 2.972021 ACTTTTTCTTGGGTTGGGGATG 59.028 45.455 0.00 0.00 0.00 3.51
936 8193 3.116746 AGACTTTTTCTTGGGTTGGGGAT 60.117 43.478 0.00 0.00 0.00 3.85
937 8194 2.246327 AGACTTTTTCTTGGGTTGGGGA 59.754 45.455 0.00 0.00 0.00 4.81
938 8195 2.628178 GAGACTTTTTCTTGGGTTGGGG 59.372 50.000 0.00 0.00 33.22 4.96
1134 8418 3.133901 TGATGTAGTTCATGCACGGGTAT 59.866 43.478 0.00 0.00 36.83 2.73
1242 8526 4.719369 GACGAGTCGCCGCCAAGT 62.719 66.667 13.59 0.00 0.00 3.16
1296 8580 2.903357 GCATTGGGGAGCTCGAGA 59.097 61.111 18.75 0.00 0.00 4.04
1374 8658 3.332485 ACCCAGGGAGCAATAACAGTAAA 59.668 43.478 14.54 0.00 0.00 2.01
1375 8659 2.916934 ACCCAGGGAGCAATAACAGTAA 59.083 45.455 14.54 0.00 0.00 2.24
1376 8660 2.557869 ACCCAGGGAGCAATAACAGTA 58.442 47.619 14.54 0.00 0.00 2.74
1377 8661 1.372501 ACCCAGGGAGCAATAACAGT 58.627 50.000 14.54 0.00 0.00 3.55
1378 8662 2.094675 CAACCCAGGGAGCAATAACAG 58.905 52.381 14.54 0.00 0.00 3.16
1379 8663 1.890573 GCAACCCAGGGAGCAATAACA 60.891 52.381 14.54 0.00 0.00 2.41
1380 8664 0.817654 GCAACCCAGGGAGCAATAAC 59.182 55.000 14.54 0.00 0.00 1.89
1381 8665 0.704076 AGCAACCCAGGGAGCAATAA 59.296 50.000 23.84 0.00 31.94 1.40
1382 8666 0.034186 CAGCAACCCAGGGAGCAATA 60.034 55.000 23.84 0.00 31.94 1.90
1383 8667 1.304713 CAGCAACCCAGGGAGCAAT 60.305 57.895 23.84 6.95 31.94 3.56
1384 8668 2.115910 CAGCAACCCAGGGAGCAA 59.884 61.111 23.84 0.00 31.94 3.91
1387 8671 2.046892 CGTCAGCAACCCAGGGAG 60.047 66.667 14.54 5.29 0.00 4.30
1397 8681 1.666011 GACAGGTCCTTCGTCAGCA 59.334 57.895 4.79 0.00 0.00 4.41
1500 8784 3.688475 ATGTAACGACGACCCGCCG 62.688 63.158 0.00 0.00 38.88 6.46
1616 8900 0.523072 CAACCTGAATCGCCAACCAG 59.477 55.000 0.00 0.00 0.00 4.00
1624 8908 3.304659 CCCAAGAAACACAACCTGAATCG 60.305 47.826 0.00 0.00 0.00 3.34
1625 8909 3.636764 ACCCAAGAAACACAACCTGAATC 59.363 43.478 0.00 0.00 0.00 2.52
1626 8910 3.384467 CACCCAAGAAACACAACCTGAAT 59.616 43.478 0.00 0.00 0.00 2.57
1627 8911 2.757868 CACCCAAGAAACACAACCTGAA 59.242 45.455 0.00 0.00 0.00 3.02
1628 8912 2.025793 TCACCCAAGAAACACAACCTGA 60.026 45.455 0.00 0.00 0.00 3.86
1629 8913 2.374184 TCACCCAAGAAACACAACCTG 58.626 47.619 0.00 0.00 0.00 4.00
1632 8916 7.448748 AATACTATCACCCAAGAAACACAAC 57.551 36.000 0.00 0.00 0.00 3.32
1651 8935 7.123697 GCTAAACCAATAGGAAACCCAAATACT 59.876 37.037 0.00 0.00 38.69 2.12
1659 8943 6.524101 TCAATGCTAAACCAATAGGAAACC 57.476 37.500 0.00 0.00 38.69 3.27
1660 8944 7.917505 CAGATCAATGCTAAACCAATAGGAAAC 59.082 37.037 0.00 0.00 38.69 2.78
1670 8954 2.099756 GTGCCCAGATCAATGCTAAACC 59.900 50.000 0.00 0.00 0.00 3.27
1671 8955 3.019564 AGTGCCCAGATCAATGCTAAAC 58.980 45.455 0.00 0.00 0.00 2.01
1674 8958 1.134007 CCAGTGCCCAGATCAATGCTA 60.134 52.381 0.00 0.00 0.00 3.49
1677 8961 1.100510 CACCAGTGCCCAGATCAATG 58.899 55.000 0.00 0.00 0.00 2.82
1678 8962 0.994247 TCACCAGTGCCCAGATCAAT 59.006 50.000 0.00 0.00 0.00 2.57
1681 8965 1.747355 CATTTCACCAGTGCCCAGATC 59.253 52.381 0.00 0.00 0.00 2.75
1692 8976 3.054875 CCTCACTCCTCATCATTTCACCA 60.055 47.826 0.00 0.00 0.00 4.17
1694 8978 4.081198 AGTCCTCACTCCTCATCATTTCAC 60.081 45.833 0.00 0.00 0.00 3.18
1695 8979 4.081254 CAGTCCTCACTCCTCATCATTTCA 60.081 45.833 0.00 0.00 0.00 2.69
1696 8980 4.161189 TCAGTCCTCACTCCTCATCATTTC 59.839 45.833 0.00 0.00 0.00 2.17
1697 8981 4.099633 TCAGTCCTCACTCCTCATCATTT 58.900 43.478 0.00 0.00 0.00 2.32
1698 8982 3.717576 TCAGTCCTCACTCCTCATCATT 58.282 45.455 0.00 0.00 0.00 2.57
1699 8983 3.395054 TCAGTCCTCACTCCTCATCAT 57.605 47.619 0.00 0.00 0.00 2.45
1700 8984 2.907458 TCAGTCCTCACTCCTCATCA 57.093 50.000 0.00 0.00 0.00 3.07
1701 8985 3.360867 TCTTCAGTCCTCACTCCTCATC 58.639 50.000 0.00 0.00 0.00 2.92
1702 8986 3.364549 CTCTTCAGTCCTCACTCCTCAT 58.635 50.000 0.00 0.00 0.00 2.90
1703 8987 2.556336 CCTCTTCAGTCCTCACTCCTCA 60.556 54.545 0.00 0.00 0.00 3.86
1704 8988 2.099405 CCTCTTCAGTCCTCACTCCTC 58.901 57.143 0.00 0.00 0.00 3.71
1705 8989 1.713647 TCCTCTTCAGTCCTCACTCCT 59.286 52.381 0.00 0.00 0.00 3.69
1706 8990 2.223803 TCCTCTTCAGTCCTCACTCC 57.776 55.000 0.00 0.00 0.00 3.85
1707 8991 3.513515 ACATTCCTCTTCAGTCCTCACTC 59.486 47.826 0.00 0.00 0.00 3.51
1708 8992 3.515562 ACATTCCTCTTCAGTCCTCACT 58.484 45.455 0.00 0.00 0.00 3.41
1720 9004 1.620819 ACGCTGACTCAACATTCCTCT 59.379 47.619 0.00 0.00 0.00 3.69
1728 9012 0.503117 GAACACGACGCTGACTCAAC 59.497 55.000 0.00 0.00 0.00 3.18
1730 9014 1.007734 GGAACACGACGCTGACTCA 60.008 57.895 0.00 0.00 0.00 3.41
1759 9043 4.751098 ACTGCAGCAAAACAACCAATAATG 59.249 37.500 15.27 0.00 0.00 1.90
1775 9059 5.117592 GTGTTGATTTTATTGTGACTGCAGC 59.882 40.000 15.27 7.45 0.00 5.25
1776 9060 5.340403 CGTGTTGATTTTATTGTGACTGCAG 59.660 40.000 13.48 13.48 0.00 4.41
1777 9061 5.211454 CGTGTTGATTTTATTGTGACTGCA 58.789 37.500 0.00 0.00 0.00 4.41
1778 9062 5.212194 ACGTGTTGATTTTATTGTGACTGC 58.788 37.500 0.00 0.00 0.00 4.40
1779 9063 8.775220 TTTACGTGTTGATTTTATTGTGACTG 57.225 30.769 0.00 0.00 0.00 3.51
1780 9064 9.445786 CTTTTACGTGTTGATTTTATTGTGACT 57.554 29.630 0.00 0.00 0.00 3.41
1802 9087 9.745018 TCCTAGAATGATGTTGATCTTTCTTTT 57.255 29.630 14.72 0.13 44.72 2.27
1921 9214 4.077108 GTGGGTTTCGGAAATAAAGGACT 58.923 43.478 6.43 0.00 0.00 3.85
1936 9229 2.203773 GCATGGGGGTGTGGGTTT 60.204 61.111 0.00 0.00 0.00 3.27
2008 9301 4.465512 CAAGCACGTGATGGCGGC 62.466 66.667 22.23 0.00 35.98 6.53
2009 9302 3.803082 CCAAGCACGTGATGGCGG 61.803 66.667 22.23 11.36 35.98 6.13
2010 9303 3.803082 CCCAAGCACGTGATGGCG 61.803 66.667 26.67 18.79 32.71 5.69
2037 9330 4.067913 TCACTGATCGCCGCAGCA 62.068 61.111 0.00 0.00 39.83 4.41
2046 9339 1.520342 GAGGCCGCTGTCACTGATC 60.520 63.158 0.00 0.00 0.00 2.92
2079 9372 1.032114 CCCGACTCCCTTGAAATGGC 61.032 60.000 0.00 0.00 0.00 4.40
2114 9774 4.796231 CCTCCCGCGACACTTCCG 62.796 72.222 8.23 0.00 0.00 4.30
2158 9818 2.437359 GCATCCTCCGCAAGCACT 60.437 61.111 0.00 0.00 0.00 4.40
2195 9855 1.619526 TTGTACCGCATTGACGTCGC 61.620 55.000 11.62 7.47 0.00 5.19
2197 9857 0.094730 GCTTGTACCGCATTGACGTC 59.905 55.000 9.11 9.11 0.00 4.34
2202 9862 0.171007 CCCTTGCTTGTACCGCATTG 59.829 55.000 7.64 4.87 37.22 2.82
2203 9863 0.037590 TCCCTTGCTTGTACCGCATT 59.962 50.000 7.64 0.00 37.22 3.56
2212 9872 1.820010 GCACCCCTTTCCCTTGCTTG 61.820 60.000 0.00 0.00 0.00 4.01
2213 9873 1.533994 GCACCCCTTTCCCTTGCTT 60.534 57.895 0.00 0.00 0.00 3.91
2231 9891 2.163021 AAAATTCCCCTCCCCCACCG 62.163 60.000 0.00 0.00 0.00 4.94
2233 9893 3.807309 AAAAATTCCCCTCCCCCAC 57.193 52.632 0.00 0.00 0.00 4.61
2254 9914 2.665185 ACCAACGCCGCTTCTCAC 60.665 61.111 0.00 0.00 0.00 3.51
2261 9921 1.356527 ATTTACTCGACCAACGCCGC 61.357 55.000 0.00 0.00 42.26 6.53
2262 9922 1.912001 TATTTACTCGACCAACGCCG 58.088 50.000 0.00 0.00 42.26 6.46
2272 9932 3.897325 TGCTGCGGTCTATATTTACTCG 58.103 45.455 0.00 0.00 0.00 4.18
2282 9942 1.153568 GCATGTCTGCTGCGGTCTA 60.154 57.895 8.55 0.00 45.32 2.59
2283 9943 2.435586 GCATGTCTGCTGCGGTCT 60.436 61.111 8.55 0.00 45.32 3.85
2292 9952 4.256110 TGTTTACTCCTCATGCATGTCTG 58.744 43.478 25.43 16.12 0.00 3.51
2294 9954 5.824904 AATGTTTACTCCTCATGCATGTC 57.175 39.130 25.43 7.38 0.00 3.06
2295 9955 5.163723 CGAAATGTTTACTCCTCATGCATGT 60.164 40.000 25.43 9.20 0.00 3.21
2296 9956 5.065090 TCGAAATGTTTACTCCTCATGCATG 59.935 40.000 21.07 21.07 0.00 4.06
2297 9957 5.185454 TCGAAATGTTTACTCCTCATGCAT 58.815 37.500 0.00 0.00 0.00 3.96
2298 9958 4.574892 TCGAAATGTTTACTCCTCATGCA 58.425 39.130 0.00 0.00 0.00 3.96
2299 9959 4.034510 CCTCGAAATGTTTACTCCTCATGC 59.965 45.833 0.00 0.00 0.00 4.06
2316 10130 4.280174 CCTTATCCGGATTAACTCCTCGAA 59.720 45.833 24.71 5.50 42.47 3.71
2359 10173 8.991275 TGAGGGAATAATTTTGATGGCTTTTAT 58.009 29.630 0.00 0.00 0.00 1.40
2360 10174 8.257306 GTGAGGGAATAATTTTGATGGCTTTTA 58.743 33.333 0.00 0.00 0.00 1.52
2361 10175 7.105588 GTGAGGGAATAATTTTGATGGCTTTT 58.894 34.615 0.00 0.00 0.00 2.27
2362 10176 6.213195 TGTGAGGGAATAATTTTGATGGCTTT 59.787 34.615 0.00 0.00 0.00 3.51
2363 10177 5.721000 TGTGAGGGAATAATTTTGATGGCTT 59.279 36.000 0.00 0.00 0.00 4.35
2364 10178 5.271598 TGTGAGGGAATAATTTTGATGGCT 58.728 37.500 0.00 0.00 0.00 4.75
2365 10179 5.596836 TGTGAGGGAATAATTTTGATGGC 57.403 39.130 0.00 0.00 0.00 4.40
2366 10180 7.116075 ACATGTGAGGGAATAATTTTGATGG 57.884 36.000 0.00 0.00 0.00 3.51
2367 10181 8.036575 ACAACATGTGAGGGAATAATTTTGATG 58.963 33.333 0.00 0.00 0.00 3.07
2368 10182 8.137745 ACAACATGTGAGGGAATAATTTTGAT 57.862 30.769 0.00 0.00 0.00 2.57
2369 10183 7.537596 ACAACATGTGAGGGAATAATTTTGA 57.462 32.000 0.00 0.00 0.00 2.69
2370 10184 9.304731 CATACAACATGTGAGGGAATAATTTTG 57.695 33.333 0.00 0.00 0.00 2.44
2371 10185 9.034800 ACATACAACATGTGAGGGAATAATTTT 57.965 29.630 0.00 0.00 0.00 1.82
2372 10186 8.593945 ACATACAACATGTGAGGGAATAATTT 57.406 30.769 0.00 0.00 0.00 1.82
2388 10202 9.936759 TGACTATCTAACAAATCACATACAACA 57.063 29.630 0.00 0.00 0.00 3.33
2426 10240 9.588096 GAACCCCAATCCTAACATCTATTTATT 57.412 33.333 0.00 0.00 0.00 1.40
2448 10262 3.838903 TCTTGGGAGTTAAGAGGAGAACC 59.161 47.826 0.00 0.00 31.04 3.62
2458 10272 3.137544 TCCAACAAGCTCTTGGGAGTTAA 59.862 43.478 18.65 1.12 44.45 2.01
2459 10273 2.708861 TCCAACAAGCTCTTGGGAGTTA 59.291 45.455 18.65 1.70 44.45 2.24
2460 10274 1.494721 TCCAACAAGCTCTTGGGAGTT 59.505 47.619 18.65 0.00 44.45 3.01
2461 10275 1.072965 CTCCAACAAGCTCTTGGGAGT 59.927 52.381 18.65 0.00 44.45 3.85
2462 10276 1.349026 TCTCCAACAAGCTCTTGGGAG 59.651 52.381 19.95 19.95 43.91 4.30
2463 10277 1.434188 TCTCCAACAAGCTCTTGGGA 58.566 50.000 18.65 13.36 44.45 4.37
2464 10278 2.276732 TTCTCCAACAAGCTCTTGGG 57.723 50.000 18.65 11.79 44.45 4.12
2465 10279 5.248640 TCTTATTCTCCAACAAGCTCTTGG 58.751 41.667 14.50 14.50 44.45 3.61
2466 10280 6.808008 TTCTTATTCTCCAACAAGCTCTTG 57.192 37.500 7.99 7.99 45.58 3.02
2467 10281 8.103305 TGTATTCTTATTCTCCAACAAGCTCTT 58.897 33.333 0.00 0.00 0.00 2.85
2468 10282 7.624549 TGTATTCTTATTCTCCAACAAGCTCT 58.375 34.615 0.00 0.00 0.00 4.09
2469 10283 7.849804 TGTATTCTTATTCTCCAACAAGCTC 57.150 36.000 0.00 0.00 0.00 4.09
2491 10305 5.305585 GGGATATTTGTGTATCGTGGATGT 58.694 41.667 0.00 0.00 32.93 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.