Multiple sequence alignment - TraesCS5D01G441000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G441000 chr5D 100.000 2639 0 0 1 2639 493996499 493999137 0.000000e+00 4874
1 TraesCS5D01G441000 chr5D 89.922 1161 76 25 776 1925 494033067 494034197 0.000000e+00 1458
2 TraesCS5D01G441000 chr5D 84.263 699 86 19 658 1340 494041668 494042358 0.000000e+00 660
3 TraesCS5D01G441000 chr5D 89.666 329 31 1 999 1327 494052846 494053171 1.460000e-112 416
4 TraesCS5D01G441000 chr5A 88.671 1783 130 33 221 1969 616983238 616981494 0.000000e+00 2108
5 TraesCS5D01G441000 chr5A 89.666 329 31 1 999 1327 616919899 616919574 1.460000e-112 416
6 TraesCS5D01G441000 chr5A 86.256 211 25 1 2139 2345 616981140 616980930 2.640000e-55 226
7 TraesCS5D01G441000 chr5B 91.061 1320 85 17 622 1931 610086155 610084859 0.000000e+00 1753
8 TraesCS5D01G441000 chr5B 86.531 1277 122 36 647 1894 610023224 610021969 0.000000e+00 1360
9 TraesCS5D01G441000 chr5B 87.890 1057 103 20 658 1699 610082151 610081105 0.000000e+00 1219
10 TraesCS5D01G441000 chr5B 85.586 555 46 17 103 638 610086767 610086228 3.840000e-153 551
11 TraesCS5D01G441000 chr5B 88.496 452 47 5 895 1343 610007845 610007396 2.310000e-150 542
12 TraesCS5D01G441000 chr5B 78.538 643 93 26 686 1327 609928107 609927509 5.330000e-102 381
13 TraesCS5D01G441000 chr5B 85.567 194 14 5 1682 1861 610080543 610080350 9.640000e-45 191
14 TraesCS5D01G441000 chr7D 80.866 277 51 2 365 640 474708483 474708758 1.590000e-52 217
15 TraesCS5D01G441000 chr7A 79.655 290 53 5 365 649 521424861 521424573 1.240000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G441000 chr5D 493996499 493999137 2638 False 4874.0 4874 100.0000 1 2639 1 chr5D.!!$F1 2638
1 TraesCS5D01G441000 chr5D 494033067 494034197 1130 False 1458.0 1458 89.9220 776 1925 1 chr5D.!!$F2 1149
2 TraesCS5D01G441000 chr5D 494041668 494042358 690 False 660.0 660 84.2630 658 1340 1 chr5D.!!$F3 682
3 TraesCS5D01G441000 chr5A 616980930 616983238 2308 True 1167.0 2108 87.4635 221 2345 2 chr5A.!!$R2 2124
4 TraesCS5D01G441000 chr5B 610021969 610023224 1255 True 1360.0 1360 86.5310 647 1894 1 chr5B.!!$R3 1247
5 TraesCS5D01G441000 chr5B 610080350 610086767 6417 True 928.5 1753 87.5260 103 1931 4 chr5B.!!$R4 1828
6 TraesCS5D01G441000 chr5B 609927509 609928107 598 True 381.0 381 78.5380 686 1327 1 chr5B.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.030705 TATGGGCCCTCTCAGCTTCT 60.031 55.0 25.7 0.0 0.0 2.85 F
325 341 0.591170 CCCAACAACCACAGCTTACG 59.409 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 1550 0.246635 TCAGCTACCCAAGAAGCGAC 59.753 55.0 0.00 0.0 43.63 5.19 R
2183 2545 0.034767 CAGCTGGCCAAGAATCCTGA 60.035 55.0 7.01 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.389206 GAAGATGGCAGCGTCGTC 58.611 61.111 2.41 0.00 0.00 4.20
18 19 1.446099 GAAGATGGCAGCGTCGTCA 60.446 57.895 2.41 0.00 0.00 4.35
19 20 1.416813 GAAGATGGCAGCGTCGTCAG 61.417 60.000 2.41 0.00 0.00 3.51
20 21 3.558411 GATGGCAGCGTCGTCAGC 61.558 66.667 0.00 0.00 0.00 4.26
21 22 4.377708 ATGGCAGCGTCGTCAGCA 62.378 61.111 0.00 0.00 37.01 4.41
22 23 3.670637 ATGGCAGCGTCGTCAGCAT 62.671 57.895 0.00 0.00 37.01 3.79
23 24 3.857854 GGCAGCGTCGTCAGCATG 61.858 66.667 7.72 0.00 37.01 4.06
24 25 4.511443 GCAGCGTCGTCAGCATGC 62.511 66.667 10.51 10.51 37.01 4.06
25 26 3.113979 CAGCGTCGTCAGCATGCA 61.114 61.111 21.98 0.00 37.01 3.96
26 27 2.812609 AGCGTCGTCAGCATGCAG 60.813 61.111 21.98 12.90 37.01 4.41
27 28 3.857854 GCGTCGTCAGCATGCAGG 61.858 66.667 21.98 11.90 34.76 4.85
28 29 3.857854 CGTCGTCAGCATGCAGGC 61.858 66.667 21.98 17.09 34.76 4.85
35 36 4.254721 AGCATGCAGGCTGATTCC 57.745 55.556 27.25 0.00 43.89 3.01
36 37 1.455217 AGCATGCAGGCTGATTCCC 60.455 57.895 27.25 0.00 43.89 3.97
37 38 1.755395 GCATGCAGGCTGATTCCCA 60.755 57.895 20.86 6.44 0.00 4.37
38 39 1.324740 GCATGCAGGCTGATTCCCAA 61.325 55.000 20.86 0.00 0.00 4.12
39 40 1.187974 CATGCAGGCTGATTCCCAAA 58.812 50.000 20.86 0.00 0.00 3.28
40 41 1.134907 CATGCAGGCTGATTCCCAAAC 60.135 52.381 20.86 0.00 0.00 2.93
41 42 0.899717 TGCAGGCTGATTCCCAAACC 60.900 55.000 20.86 0.00 0.00 3.27
42 43 0.899717 GCAGGCTGATTCCCAAACCA 60.900 55.000 20.86 0.00 0.00 3.67
43 44 0.890683 CAGGCTGATTCCCAAACCAC 59.109 55.000 9.42 0.00 0.00 4.16
44 45 0.251787 AGGCTGATTCCCAAACCACC 60.252 55.000 0.00 0.00 0.00 4.61
45 46 0.251787 GGCTGATTCCCAAACCACCT 60.252 55.000 0.00 0.00 0.00 4.00
46 47 1.005450 GGCTGATTCCCAAACCACCTA 59.995 52.381 0.00 0.00 0.00 3.08
47 48 2.358195 GGCTGATTCCCAAACCACCTAT 60.358 50.000 0.00 0.00 0.00 2.57
48 49 2.689983 GCTGATTCCCAAACCACCTATG 59.310 50.000 0.00 0.00 0.00 2.23
57 58 3.568578 CCACCTATGGGCCCTCTC 58.431 66.667 25.70 0.00 43.04 3.20
58 59 1.384502 CCACCTATGGGCCCTCTCA 60.385 63.158 25.70 1.52 43.04 3.27
59 60 1.414061 CCACCTATGGGCCCTCTCAG 61.414 65.000 25.70 13.94 43.04 3.35
60 61 1.768077 ACCTATGGGCCCTCTCAGC 60.768 63.158 25.70 0.00 35.63 4.26
61 62 1.461075 CCTATGGGCCCTCTCAGCT 60.461 63.158 25.70 1.16 0.00 4.24
62 63 1.059006 CCTATGGGCCCTCTCAGCTT 61.059 60.000 25.70 0.00 0.00 3.74
63 64 0.396060 CTATGGGCCCTCTCAGCTTC 59.604 60.000 25.70 0.00 0.00 3.86
64 65 0.030705 TATGGGCCCTCTCAGCTTCT 60.031 55.000 25.70 0.00 0.00 2.85
65 66 1.633915 ATGGGCCCTCTCAGCTTCTG 61.634 60.000 25.70 0.00 0.00 3.02
66 67 2.297129 GGGCCCTCTCAGCTTCTGT 61.297 63.158 17.04 0.00 32.61 3.41
67 68 0.978146 GGGCCCTCTCAGCTTCTGTA 60.978 60.000 17.04 0.00 32.61 2.74
68 69 0.905357 GGCCCTCTCAGCTTCTGTAA 59.095 55.000 0.00 0.00 32.61 2.41
69 70 1.488393 GGCCCTCTCAGCTTCTGTAAT 59.512 52.381 0.00 0.00 32.61 1.89
70 71 2.092699 GGCCCTCTCAGCTTCTGTAATT 60.093 50.000 0.00 0.00 32.61 1.40
71 72 3.202097 GCCCTCTCAGCTTCTGTAATTC 58.798 50.000 0.00 0.00 32.61 2.17
72 73 3.802866 CCCTCTCAGCTTCTGTAATTCC 58.197 50.000 0.00 0.00 32.61 3.01
73 74 3.432890 CCCTCTCAGCTTCTGTAATTCCC 60.433 52.174 0.00 0.00 32.61 3.97
74 75 3.432890 CCTCTCAGCTTCTGTAATTCCCC 60.433 52.174 0.00 0.00 32.61 4.81
75 76 3.454082 CTCTCAGCTTCTGTAATTCCCCT 59.546 47.826 0.00 0.00 32.61 4.79
76 77 4.620723 TCTCAGCTTCTGTAATTCCCCTA 58.379 43.478 0.00 0.00 32.61 3.53
77 78 5.030147 TCTCAGCTTCTGTAATTCCCCTAA 58.970 41.667 0.00 0.00 32.61 2.69
78 79 5.667626 TCTCAGCTTCTGTAATTCCCCTAAT 59.332 40.000 0.00 0.00 32.61 1.73
79 80 6.158695 TCTCAGCTTCTGTAATTCCCCTAATT 59.841 38.462 0.00 0.00 40.87 1.40
80 81 6.122277 TCAGCTTCTGTAATTCCCCTAATTG 58.878 40.000 0.00 0.00 38.29 2.32
81 82 5.300286 CAGCTTCTGTAATTCCCCTAATTGG 59.700 44.000 0.00 0.00 38.29 3.16
82 83 5.193728 AGCTTCTGTAATTCCCCTAATTGGA 59.806 40.000 0.00 0.00 38.29 3.53
83 84 6.071320 GCTTCTGTAATTCCCCTAATTGGAT 58.929 40.000 0.00 0.00 38.29 3.41
84 85 6.551227 GCTTCTGTAATTCCCCTAATTGGATT 59.449 38.462 0.00 0.00 38.29 3.01
85 86 7.069950 GCTTCTGTAATTCCCCTAATTGGATTT 59.930 37.037 0.00 0.00 38.29 2.17
86 87 8.533569 TTCTGTAATTCCCCTAATTGGATTTC 57.466 34.615 0.00 0.00 38.29 2.17
87 88 7.882755 TCTGTAATTCCCCTAATTGGATTTCT 58.117 34.615 0.00 0.00 38.29 2.52
88 89 7.998964 TCTGTAATTCCCCTAATTGGATTTCTC 59.001 37.037 0.00 0.00 38.29 2.87
89 90 7.647827 TGTAATTCCCCTAATTGGATTTCTCA 58.352 34.615 0.00 0.00 38.29 3.27
90 91 8.119246 TGTAATTCCCCTAATTGGATTTCTCAA 58.881 33.333 0.00 0.00 38.29 3.02
91 92 7.666063 AATTCCCCTAATTGGATTTCTCAAG 57.334 36.000 0.00 0.00 36.41 3.02
92 93 6.401537 TTCCCCTAATTGGATTTCTCAAGA 57.598 37.500 0.00 0.00 38.35 3.02
93 94 6.596869 TCCCCTAATTGGATTTCTCAAGAT 57.403 37.500 0.00 0.00 38.35 2.40
94 95 6.985225 TCCCCTAATTGGATTTCTCAAGATT 58.015 36.000 0.00 0.00 38.35 2.40
95 96 7.062957 TCCCCTAATTGGATTTCTCAAGATTC 58.937 38.462 0.00 0.00 38.35 2.52
96 97 6.266330 CCCCTAATTGGATTTCTCAAGATTCC 59.734 42.308 0.00 3.64 38.35 3.01
97 98 6.016777 CCCTAATTGGATTTCTCAAGATTCCG 60.017 42.308 0.00 0.00 38.35 4.30
98 99 6.543831 CCTAATTGGATTTCTCAAGATTCCGT 59.456 38.462 0.00 0.00 38.35 4.69
99 100 6.840780 AATTGGATTTCTCAAGATTCCGTT 57.159 33.333 5.52 2.06 32.44 4.44
100 101 6.840780 ATTGGATTTCTCAAGATTCCGTTT 57.159 33.333 5.52 0.00 32.44 3.60
101 102 6.648879 TTGGATTTCTCAAGATTCCGTTTT 57.351 33.333 5.52 0.00 32.44 2.43
102 103 6.012658 TGGATTTCTCAAGATTCCGTTTTG 57.987 37.500 5.52 0.00 32.44 2.44
103 104 5.767665 TGGATTTCTCAAGATTCCGTTTTGA 59.232 36.000 5.52 0.00 32.44 2.69
104 105 6.264292 TGGATTTCTCAAGATTCCGTTTTGAA 59.736 34.615 5.52 0.00 32.44 2.69
105 106 7.039784 TGGATTTCTCAAGATTCCGTTTTGAAT 60.040 33.333 5.52 0.00 37.66 2.57
117 118 9.490379 GATTCCGTTTTGAATATATGGAGTACT 57.510 33.333 0.00 0.00 35.15 2.73
163 164 8.855110 CAGGATGATACATCTAGTTACTGAAGT 58.145 37.037 10.78 0.00 39.69 3.01
174 175 8.572855 TCTAGTTACTGAAGTACTTCCTAACC 57.427 38.462 28.89 18.64 38.77 2.85
177 178 7.008941 AGTTACTGAAGTACTTCCTAACCAGA 58.991 38.462 28.89 14.51 38.77 3.86
185 186 9.535878 GAAGTACTTCCTAACCAGATATCTTTG 57.464 37.037 22.74 0.00 33.64 2.77
187 188 9.710818 AGTACTTCCTAACCAGATATCTTTGTA 57.289 33.333 1.33 0.00 0.00 2.41
209 211 4.823790 AAAAACGGACGCTTTATTCACT 57.176 36.364 0.00 0.00 0.00 3.41
211 213 5.927954 AAAACGGACGCTTTATTCACTTA 57.072 34.783 0.00 0.00 0.00 2.24
212 214 6.490566 AAAACGGACGCTTTATTCACTTAT 57.509 33.333 0.00 0.00 0.00 1.73
213 215 5.713822 AACGGACGCTTTATTCACTTATC 57.286 39.130 0.00 0.00 0.00 1.75
214 216 4.751060 ACGGACGCTTTATTCACTTATCA 58.249 39.130 0.00 0.00 0.00 2.15
215 217 5.357257 ACGGACGCTTTATTCACTTATCAT 58.643 37.500 0.00 0.00 0.00 2.45
216 218 6.509656 ACGGACGCTTTATTCACTTATCATA 58.490 36.000 0.00 0.00 0.00 2.15
217 219 7.152645 ACGGACGCTTTATTCACTTATCATAT 58.847 34.615 0.00 0.00 0.00 1.78
218 220 8.301720 ACGGACGCTTTATTCACTTATCATATA 58.698 33.333 0.00 0.00 0.00 0.86
219 221 8.799091 CGGACGCTTTATTCACTTATCATATAG 58.201 37.037 0.00 0.00 0.00 1.31
292 308 4.202090 CCCTCCCTAGTGTGAATAACGTAC 60.202 50.000 0.00 0.00 0.00 3.67
293 309 4.643784 CCTCCCTAGTGTGAATAACGTACT 59.356 45.833 0.00 0.00 0.00 2.73
294 310 5.824624 CCTCCCTAGTGTGAATAACGTACTA 59.175 44.000 0.00 0.00 0.00 1.82
308 324 2.210116 CGTACTACAATGCATGGTCCC 58.790 52.381 10.83 0.00 0.00 4.46
309 325 2.419436 CGTACTACAATGCATGGTCCCA 60.419 50.000 10.83 0.00 0.00 4.37
312 328 2.224992 ACTACAATGCATGGTCCCAACA 60.225 45.455 10.83 0.00 0.00 3.33
319 335 4.997884 TGGTCCCAACAACCACAG 57.002 55.556 0.00 0.00 41.84 3.66
325 341 0.591170 CCCAACAACCACAGCTTACG 59.409 55.000 0.00 0.00 0.00 3.18
327 343 1.002900 CCAACAACCACAGCTTACGTG 60.003 52.381 0.00 0.00 0.00 4.49
328 344 0.661020 AACAACCACAGCTTACGTGC 59.339 50.000 0.00 0.00 32.85 5.34
361 381 4.908687 ACGCTGCAGCCACACGAA 62.909 61.111 32.07 0.00 37.91 3.85
411 431 6.072508 TGTTCTTCATGACAAGGCACTAATTC 60.073 38.462 0.00 0.00 38.49 2.17
473 493 4.084066 TGAACAAAACACGATCATCTTCCG 60.084 41.667 0.00 0.00 0.00 4.30
525 545 6.064717 GGTAAACCCAAGCAATATCTGATCT 58.935 40.000 0.00 0.00 0.00 2.75
533 553 6.262496 CCAAGCAATATCTGATCTTCATGTGT 59.738 38.462 0.00 0.00 0.00 3.72
534 554 6.862711 AGCAATATCTGATCTTCATGTGTG 57.137 37.500 0.00 0.00 0.00 3.82
628 742 5.006165 TCACCGAATTTGCAATCAACAAAAC 59.994 36.000 0.00 0.00 40.19 2.43
714 832 7.562454 TTTTCTGAAGTAAAAAGTCCGTGAT 57.438 32.000 0.00 0.00 0.00 3.06
789 909 2.362736 ACATGCAGCTCACCAACATAG 58.637 47.619 0.00 0.00 0.00 2.23
908 1041 1.118838 ACTAGCTAGCTCCAAGCCTG 58.881 55.000 23.26 5.11 43.77 4.85
972 1119 5.424895 CCAAGGGGAAAAACATCCATCAATA 59.575 40.000 0.00 0.00 41.55 1.90
979 1126 1.597742 ACATCCATCAATAGCGGCAC 58.402 50.000 1.45 0.00 0.00 5.01
1110 1257 2.731571 GCTGATCGGCCTGTACCCA 61.732 63.158 16.13 0.00 0.00 4.51
1396 1546 5.504010 GCTGCACTGCACGTATAATAATGTT 60.504 40.000 0.00 0.00 33.79 2.71
1400 1550 6.194508 GCACTGCACGTATAATAATGTTGTTG 59.805 38.462 0.00 0.00 0.00 3.33
1414 1564 2.215196 GTTGTTGTCGCTTCTTGGGTA 58.785 47.619 0.00 0.00 0.00 3.69
1424 1574 1.000955 CTTCTTGGGTAGCTGACACGT 59.999 52.381 0.00 0.00 32.12 4.49
1426 1576 0.670546 CTTGGGTAGCTGACACGTGG 60.671 60.000 21.57 2.89 32.12 4.94
1428 1578 2.342279 GGTAGCTGACACGTGGCA 59.658 61.111 25.31 25.31 0.00 4.92
1435 1586 1.400242 GCTGACACGTGGCATCTTTTC 60.400 52.381 27.26 8.13 29.25 2.29
1651 1802 1.134530 CGTTTGAGCGTCTCGGCTAG 61.135 60.000 3.08 0.00 44.93 3.42
1799 1964 1.299850 GGTTGTTTTGCTGCGGACC 60.300 57.895 0.00 0.00 0.00 4.46
1831 2007 9.886132 AGAAGAGTCAACACTTTTTACTTTCTA 57.114 29.630 0.00 0.00 30.63 2.10
1961 2138 6.474630 TCTATTTTTCTTGCGGGGTAAGTTA 58.525 36.000 0.00 0.00 0.00 2.24
1972 2246 8.611654 TTGCGGGGTAAGTTATATTCTATTTC 57.388 34.615 0.00 0.00 0.00 2.17
2005 2279 4.309950 AAGCCGGTCACACCCGTC 62.310 66.667 1.90 0.00 46.66 4.79
2011 2285 2.426023 GTCACACCCGTCAAGGCT 59.574 61.111 0.00 0.00 39.21 4.58
2014 2288 1.003355 CACACCCGTCAAGGCTCAT 60.003 57.895 0.00 0.00 39.21 2.90
2031 2305 1.410882 TCATATGGCGTTCCACATCGA 59.589 47.619 2.13 0.00 46.92 3.59
2043 2317 4.610605 TCCACATCGACTGGTTTTCTTA 57.389 40.909 10.14 0.00 0.00 2.10
2068 2342 1.444250 TGGTTTCTCCACGTCGCTT 59.556 52.632 0.00 0.00 41.93 4.68
2091 2365 2.291043 ACCCGCCTGATTCGTCCTT 61.291 57.895 0.00 0.00 0.00 3.36
2092 2366 1.078426 CCCGCCTGATTCGTCCTTT 60.078 57.895 0.00 0.00 0.00 3.11
2097 2371 1.468914 GCCTGATTCGTCCTTTGGTTC 59.531 52.381 0.00 0.00 0.00 3.62
2098 2372 1.732259 CCTGATTCGTCCTTTGGTTCG 59.268 52.381 0.00 0.00 0.00 3.95
2102 2376 2.041251 TTCGTCCTTTGGTTCGGTTT 57.959 45.000 0.00 0.00 0.00 3.27
2111 2385 2.631160 TGGTTCGGTTTGACTCATGT 57.369 45.000 0.00 0.00 0.00 3.21
2113 2387 2.104111 TGGTTCGGTTTGACTCATGTCT 59.896 45.455 0.00 0.00 43.29 3.41
2183 2545 1.315257 GGCATCCGAGGTGCAACATT 61.315 55.000 3.64 0.00 44.25 2.71
2197 2559 2.417787 GCAACATTCAGGATTCTTGGCC 60.418 50.000 0.00 0.00 0.00 5.36
2218 2580 1.970114 CTGGTGCAGCCTGGACTTG 60.970 63.158 16.22 5.63 38.83 3.16
2222 2584 1.228245 TGCAGCCTGGACTTGAACC 60.228 57.895 0.00 0.00 0.00 3.62
2236 2602 1.150536 GAACCAGGCACACCCAAGA 59.849 57.895 0.00 0.00 36.11 3.02
2242 2608 2.896685 CCAGGCACACCCAAGATTAAAA 59.103 45.455 0.00 0.00 36.11 1.52
2252 2618 7.116233 CACACCCAAGATTAAAACTTTGCATAC 59.884 37.037 0.00 0.00 0.00 2.39
2257 2623 7.867403 CCAAGATTAAAACTTTGCATACACTGT 59.133 33.333 0.00 0.00 0.00 3.55
2260 2626 8.076178 AGATTAAAACTTTGCATACACTGTGTC 58.924 33.333 17.99 3.85 0.00 3.67
2287 2653 1.281867 CCTTCTACCCTCATTGTGCCA 59.718 52.381 0.00 0.00 0.00 4.92
2293 2659 2.726821 ACCCTCATTGTGCCATACTTG 58.273 47.619 0.00 0.00 0.00 3.16
2346 2731 2.081462 GGTACACAGTACCATGCCAAC 58.919 52.381 18.77 0.00 37.53 3.77
2347 2732 2.290071 GGTACACAGTACCATGCCAACT 60.290 50.000 18.77 0.00 37.53 3.16
2360 2745 2.353376 CAACTTGTTGCACCGGCG 60.353 61.111 0.00 0.00 45.35 6.46
2361 2746 3.591835 AACTTGTTGCACCGGCGG 61.592 61.111 27.06 27.06 45.35 6.13
2372 2757 2.975536 CCGGCGGGTACTTGAAGA 59.024 61.111 20.56 0.00 0.00 2.87
2375 2760 1.675219 GGCGGGTACTTGAAGACCA 59.325 57.895 13.27 0.00 37.47 4.02
2377 2762 3.139029 CGGGTACTTGAAGACCAGC 57.861 57.895 13.27 2.73 37.47 4.85
2378 2763 0.320374 CGGGTACTTGAAGACCAGCA 59.680 55.000 13.27 0.00 37.47 4.41
2379 2764 1.066143 CGGGTACTTGAAGACCAGCAT 60.066 52.381 13.27 0.00 37.47 3.79
2380 2765 2.359900 GGGTACTTGAAGACCAGCATG 58.640 52.381 13.27 0.00 37.47 4.06
2381 2766 1.740025 GGTACTTGAAGACCAGCATGC 59.260 52.381 10.51 10.51 35.65 4.06
2382 2767 1.740025 GTACTTGAAGACCAGCATGCC 59.260 52.381 15.66 0.00 31.97 4.40
2383 2768 0.111061 ACTTGAAGACCAGCATGCCA 59.889 50.000 15.66 0.00 31.97 4.92
2384 2769 1.250328 CTTGAAGACCAGCATGCCAA 58.750 50.000 15.66 8.54 31.97 4.52
2385 2770 1.201647 CTTGAAGACCAGCATGCCAAG 59.798 52.381 15.66 14.42 31.97 3.61
2386 2771 1.246056 TGAAGACCAGCATGCCAAGC 61.246 55.000 15.66 1.77 31.97 4.01
2387 2772 0.964358 GAAGACCAGCATGCCAAGCT 60.964 55.000 15.66 4.39 44.62 3.74
2393 2778 3.344703 AGCATGCCAAGCTGTTACA 57.655 47.368 15.66 0.00 41.61 2.41
2403 2790 0.318445 AGCTGTTACACCGACACGAC 60.318 55.000 0.00 0.00 0.00 4.34
2405 2792 0.041047 CTGTTACACCGACACGACGA 60.041 55.000 0.00 0.00 35.09 4.20
2410 2797 3.052082 ACCGACACGACGACCGAT 61.052 61.111 0.00 0.00 41.76 4.18
2416 2803 0.449388 ACACGACGACCGATAACCTC 59.551 55.000 0.00 0.00 41.76 3.85
2417 2804 0.248377 CACGACGACCGATAACCTCC 60.248 60.000 0.00 0.00 41.76 4.30
2420 2807 1.386533 GACGACCGATAACCTCCAGA 58.613 55.000 0.00 0.00 0.00 3.86
2421 2808 1.334243 GACGACCGATAACCTCCAGAG 59.666 57.143 0.00 0.00 0.00 3.35
2432 2851 3.890313 TCCAGAGCAGGAGCAACA 58.110 55.556 0.00 0.00 45.49 3.33
2433 2852 2.144952 TCCAGAGCAGGAGCAACAA 58.855 52.632 0.00 0.00 45.49 2.83
2439 2858 1.265365 GAGCAGGAGCAACAAGTTGAC 59.735 52.381 16.54 9.03 45.49 3.18
2452 2871 3.319122 ACAAGTTGACTGGCCATTTCTTC 59.681 43.478 5.51 3.89 0.00 2.87
2453 2872 3.228188 AGTTGACTGGCCATTTCTTCA 57.772 42.857 5.51 1.10 0.00 3.02
2454 2873 3.771216 AGTTGACTGGCCATTTCTTCAT 58.229 40.909 5.51 0.00 0.00 2.57
2461 2880 1.134907 GGCCATTTCTTCATGCCACTG 60.135 52.381 0.00 0.00 0.00 3.66
2463 2882 2.028748 GCCATTTCTTCATGCCACTGTT 60.029 45.455 0.00 0.00 0.00 3.16
2464 2883 3.581755 CCATTTCTTCATGCCACTGTTG 58.418 45.455 0.00 0.00 0.00 3.33
2466 2885 4.501915 CCATTTCTTCATGCCACTGTTGTT 60.502 41.667 0.00 0.00 0.00 2.83
2467 2886 3.988379 TTCTTCATGCCACTGTTGTTC 57.012 42.857 0.00 0.00 0.00 3.18
2469 2888 1.955778 CTTCATGCCACTGTTGTTCCA 59.044 47.619 0.00 0.00 0.00 3.53
2470 2889 2.291209 TCATGCCACTGTTGTTCCAT 57.709 45.000 0.00 0.00 0.00 3.41
2471 2890 2.161855 TCATGCCACTGTTGTTCCATC 58.838 47.619 0.00 0.00 0.00 3.51
2474 2893 0.889186 GCCACTGTTGTTCCATCGGT 60.889 55.000 0.00 0.00 0.00 4.69
2475 2894 0.874390 CCACTGTTGTTCCATCGGTG 59.126 55.000 7.11 7.11 39.06 4.94
2476 2895 2.481427 CCACTGTTGTTCCATCGGTGG 61.481 57.143 8.97 8.97 46.94 4.61
2485 2904 3.081133 CATCGGTGGAACGAAGCG 58.919 61.111 0.00 0.00 46.92 4.68
2487 2906 1.736645 ATCGGTGGAACGAAGCGTG 60.737 57.895 0.00 0.00 46.92 5.34
2488 2907 3.411351 CGGTGGAACGAAGCGTGG 61.411 66.667 0.00 0.00 39.99 4.94
2489 2908 2.029964 GGTGGAACGAAGCGTGGA 59.970 61.111 0.00 0.00 39.99 4.02
2490 2909 2.027625 GGTGGAACGAAGCGTGGAG 61.028 63.158 0.00 0.00 39.99 3.86
2492 2911 1.006571 TGGAACGAAGCGTGGAGAC 60.007 57.895 0.00 0.00 39.99 3.36
2495 2914 0.992802 GAACGAAGCGTGGAGACATC 59.007 55.000 0.00 0.00 46.14 3.06
2496 2915 0.732880 AACGAAGCGTGGAGACATCG 60.733 55.000 0.00 0.00 46.14 3.84
2497 2916 1.154016 CGAAGCGTGGAGACATCGT 60.154 57.895 0.00 0.00 46.14 3.73
2498 2917 1.406219 CGAAGCGTGGAGACATCGTG 61.406 60.000 0.00 0.00 46.14 4.35
2499 2918 1.078759 GAAGCGTGGAGACATCGTGG 61.079 60.000 0.00 0.00 46.14 4.94
2500 2919 1.532604 AAGCGTGGAGACATCGTGGA 61.533 55.000 0.00 0.00 46.14 4.02
2501 2920 1.517257 GCGTGGAGACATCGTGGAG 60.517 63.158 0.00 0.00 46.14 3.86
2502 2921 1.883732 CGTGGAGACATCGTGGAGT 59.116 57.895 0.00 0.00 46.14 3.85
2503 2922 0.179161 CGTGGAGACATCGTGGAGTC 60.179 60.000 0.00 0.00 46.14 3.36
2504 2923 0.888619 GTGGAGACATCGTGGAGTCA 59.111 55.000 0.00 0.00 46.14 3.41
2505 2924 1.135257 GTGGAGACATCGTGGAGTCAG 60.135 57.143 0.00 0.00 46.14 3.51
2506 2925 0.457851 GGAGACATCGTGGAGTCAGG 59.542 60.000 0.00 0.00 37.23 3.86
2508 2927 0.251832 AGACATCGTGGAGTCAGGGT 60.252 55.000 0.00 0.00 37.23 4.34
2509 2928 0.608640 GACATCGTGGAGTCAGGGTT 59.391 55.000 0.00 0.00 34.93 4.11
2512 2931 1.208052 CATCGTGGAGTCAGGGTTCAT 59.792 52.381 0.00 0.00 0.00 2.57
2513 2932 1.348064 TCGTGGAGTCAGGGTTCATT 58.652 50.000 0.00 0.00 0.00 2.57
2514 2933 1.001974 TCGTGGAGTCAGGGTTCATTG 59.998 52.381 0.00 0.00 0.00 2.82
2522 6210 2.034558 GTCAGGGTTCATTGGTGTTGTG 59.965 50.000 0.00 0.00 0.00 3.33
2525 6213 3.634448 CAGGGTTCATTGGTGTTGTGTAA 59.366 43.478 0.00 0.00 0.00 2.41
2526 6214 4.280677 CAGGGTTCATTGGTGTTGTGTAAT 59.719 41.667 0.00 0.00 0.00 1.89
2527 6215 4.280677 AGGGTTCATTGGTGTTGTGTAATG 59.719 41.667 0.00 0.00 33.09 1.90
2529 6217 5.221342 GGGTTCATTGGTGTTGTGTAATGAA 60.221 40.000 0.00 0.00 43.38 2.57
2538 6226 6.658391 TGGTGTTGTGTAATGAATCATCATGA 59.342 34.615 0.00 0.00 45.60 3.07
2539 6227 7.148205 TGGTGTTGTGTAATGAATCATCATGAG 60.148 37.037 0.09 0.00 45.60 2.90
2540 6228 7.066163 GGTGTTGTGTAATGAATCATCATGAGA 59.934 37.037 0.09 0.00 45.60 3.27
2541 6229 7.907045 GTGTTGTGTAATGAATCATCATGAGAC 59.093 37.037 0.09 0.00 45.60 3.36
2542 6230 7.066163 TGTTGTGTAATGAATCATCATGAGACC 59.934 37.037 0.09 0.00 45.60 3.85
2543 6231 6.652053 TGTGTAATGAATCATCATGAGACCA 58.348 36.000 0.09 2.35 45.60 4.02
2544 6232 6.764560 TGTGTAATGAATCATCATGAGACCAG 59.235 38.462 0.09 0.00 45.60 4.00
2545 6233 6.765036 GTGTAATGAATCATCATGAGACCAGT 59.235 38.462 0.09 3.80 45.60 4.00
2546 6234 7.928167 GTGTAATGAATCATCATGAGACCAGTA 59.072 37.037 0.09 2.99 45.60 2.74
2547 6235 8.485392 TGTAATGAATCATCATGAGACCAGTAA 58.515 33.333 0.09 0.00 45.60 2.24
2548 6236 9.330063 GTAATGAATCATCATGAGACCAGTAAA 57.670 33.333 0.09 0.00 45.60 2.01
2550 6238 7.186570 TGAATCATCATGAGACCAGTAAAGA 57.813 36.000 0.09 0.00 0.00 2.52
2552 6240 7.767659 TGAATCATCATGAGACCAGTAAAGAAG 59.232 37.037 0.09 0.00 0.00 2.85
2553 6241 6.857437 TCATCATGAGACCAGTAAAGAAGA 57.143 37.500 0.09 0.00 0.00 2.87
2558 6246 8.190326 TCATGAGACCAGTAAAGAAGAAGTTA 57.810 34.615 0.00 0.00 0.00 2.24
2559 6247 8.307483 TCATGAGACCAGTAAAGAAGAAGTTAG 58.693 37.037 0.00 0.00 0.00 2.34
2561 6249 5.795972 AGACCAGTAAAGAAGAAGTTAGGC 58.204 41.667 0.00 0.00 0.00 3.93
2564 6252 4.865365 CCAGTAAAGAAGAAGTTAGGCTCG 59.135 45.833 0.00 0.00 0.00 5.03
2565 6253 5.336531 CCAGTAAAGAAGAAGTTAGGCTCGA 60.337 44.000 0.00 0.00 0.00 4.04
2566 6254 5.573669 CAGTAAAGAAGAAGTTAGGCTCGAC 59.426 44.000 0.00 0.00 0.00 4.20
2567 6255 4.602340 AAAGAAGAAGTTAGGCTCGACA 57.398 40.909 0.00 0.00 0.00 4.35
2568 6256 3.579335 AGAAGAAGTTAGGCTCGACAC 57.421 47.619 0.00 0.00 0.00 3.67
2569 6257 2.891580 AGAAGAAGTTAGGCTCGACACA 59.108 45.455 0.00 0.00 0.00 3.72
2570 6258 3.321111 AGAAGAAGTTAGGCTCGACACAA 59.679 43.478 0.00 0.00 0.00 3.33
2571 6259 3.963428 AGAAGTTAGGCTCGACACAAT 57.037 42.857 0.00 0.00 0.00 2.71
2572 6260 4.273148 AGAAGTTAGGCTCGACACAATT 57.727 40.909 0.00 0.00 0.00 2.32
2573 6261 4.642429 AGAAGTTAGGCTCGACACAATTT 58.358 39.130 0.00 0.00 0.00 1.82
2575 6263 4.749245 AGTTAGGCTCGACACAATTTTG 57.251 40.909 0.00 0.00 0.00 2.44
2576 6264 4.385825 AGTTAGGCTCGACACAATTTTGA 58.614 39.130 0.00 0.00 0.00 2.69
2577 6265 5.003804 AGTTAGGCTCGACACAATTTTGAT 58.996 37.500 0.00 0.00 0.00 2.57
2578 6266 5.473504 AGTTAGGCTCGACACAATTTTGATT 59.526 36.000 0.00 0.00 0.00 2.57
2579 6267 6.653320 AGTTAGGCTCGACACAATTTTGATTA 59.347 34.615 0.00 0.00 0.00 1.75
2580 6268 5.957842 AGGCTCGACACAATTTTGATTAA 57.042 34.783 0.00 0.00 0.00 1.40
2581 6269 6.325919 AGGCTCGACACAATTTTGATTAAA 57.674 33.333 0.00 0.00 0.00 1.52
2582 6270 6.924111 AGGCTCGACACAATTTTGATTAAAT 58.076 32.000 0.00 0.00 38.08 1.40
2583 6271 6.808212 AGGCTCGACACAATTTTGATTAAATG 59.192 34.615 0.00 0.00 36.57 2.32
2586 6274 6.393990 TCGACACAATTTTGATTAAATGGGG 58.606 36.000 0.00 0.00 36.73 4.96
2587 6275 5.580297 CGACACAATTTTGATTAAATGGGGG 59.420 40.000 0.00 0.00 35.23 5.40
2588 6276 6.446909 ACACAATTTTGATTAAATGGGGGT 57.553 33.333 0.00 0.00 35.23 4.95
2589 6277 7.560796 ACACAATTTTGATTAAATGGGGGTA 57.439 32.000 0.00 0.00 35.23 3.69
2590 6278 7.978925 ACACAATTTTGATTAAATGGGGGTAA 58.021 30.769 0.00 0.00 35.23 2.85
2591 6279 8.440771 ACACAATTTTGATTAAATGGGGGTAAA 58.559 29.630 0.00 0.00 35.23 2.01
2592 6280 9.289782 CACAATTTTGATTAAATGGGGGTAAAA 57.710 29.630 0.00 0.00 36.57 1.52
2593 6281 9.290988 ACAATTTTGATTAAATGGGGGTAAAAC 57.709 29.630 0.00 0.00 36.57 2.43
2594 6282 8.735315 CAATTTTGATTAAATGGGGGTAAAACC 58.265 33.333 0.00 0.00 36.57 3.27
2595 6283 5.662674 TTGATTAAATGGGGGTAAAACCG 57.337 39.130 0.00 0.00 39.83 4.44
2597 6285 5.520751 TGATTAAATGGGGGTAAAACCGAT 58.479 37.500 0.00 0.00 39.83 4.18
2599 6287 3.459710 AAATGGGGGTAAAACCGATGA 57.540 42.857 0.00 0.00 39.83 2.92
2600 6288 3.459710 AATGGGGGTAAAACCGATGAA 57.540 42.857 0.00 0.00 39.83 2.57
2603 6291 3.780626 TGGGGGTAAAACCGATGAAAAT 58.219 40.909 0.00 0.00 39.83 1.82
2604 6292 4.931914 TGGGGGTAAAACCGATGAAAATA 58.068 39.130 0.00 0.00 39.83 1.40
2606 6294 5.595133 TGGGGGTAAAACCGATGAAAATATC 59.405 40.000 0.00 0.00 39.83 1.63
2608 6296 6.322969 GGGGGTAAAACCGATGAAAATATCTT 59.677 38.462 0.00 0.00 39.83 2.40
2610 6298 8.905850 GGGGTAAAACCGATGAAAATATCTTAA 58.094 33.333 0.00 0.00 39.83 1.85
2615 6303 9.816354 AAAACCGATGAAAATATCTTAAATGGG 57.184 29.630 0.00 0.00 0.00 4.00
2616 6304 7.524717 ACCGATGAAAATATCTTAAATGGGG 57.475 36.000 0.00 0.00 0.00 4.96
2619 6307 7.432869 CGATGAAAATATCTTAAATGGGGCAA 58.567 34.615 0.00 0.00 0.00 4.52
2620 6308 8.090214 CGATGAAAATATCTTAAATGGGGCAAT 58.910 33.333 0.00 0.00 0.00 3.56
2621 6309 9.428097 GATGAAAATATCTTAAATGGGGCAATC 57.572 33.333 0.00 0.00 0.00 2.67
2622 6310 7.734942 TGAAAATATCTTAAATGGGGCAATCC 58.265 34.615 0.00 0.00 0.00 3.01
2635 6323 3.959535 GGCAATCCCTGTCAAAAATGA 57.040 42.857 0.00 0.00 0.00 2.57
2636 6324 4.476628 GGCAATCCCTGTCAAAAATGAT 57.523 40.909 0.00 0.00 0.00 2.45
2637 6325 5.596836 GGCAATCCCTGTCAAAAATGATA 57.403 39.130 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.670637 ATGCTGACGACGCTGCCAT 62.671 57.895 14.74 3.25 32.49 4.40
5 6 4.377708 ATGCTGACGACGCTGCCA 62.378 61.111 14.74 1.28 32.49 4.92
6 7 3.857854 CATGCTGACGACGCTGCC 61.858 66.667 14.74 0.00 32.49 4.85
7 8 4.511443 GCATGCTGACGACGCTGC 62.511 66.667 11.37 11.94 0.00 5.25
8 9 3.079941 CTGCATGCTGACGACGCTG 62.080 63.158 20.33 0.00 0.00 5.18
9 10 2.812609 CTGCATGCTGACGACGCT 60.813 61.111 20.33 0.00 0.00 5.07
10 11 3.857854 CCTGCATGCTGACGACGC 61.858 66.667 24.53 0.00 0.00 5.19
11 12 3.857854 GCCTGCATGCTGACGACG 61.858 66.667 24.53 9.42 0.00 5.12
12 13 2.435586 AGCCTGCATGCTGACGAC 60.436 61.111 24.53 11.40 40.90 4.34
18 19 1.455217 GGGAATCAGCCTGCATGCT 60.455 57.895 20.33 11.04 44.00 3.79
19 20 1.324740 TTGGGAATCAGCCTGCATGC 61.325 55.000 11.82 11.82 0.00 4.06
20 21 1.134907 GTTTGGGAATCAGCCTGCATG 60.135 52.381 0.00 0.00 0.00 4.06
21 22 1.188863 GTTTGGGAATCAGCCTGCAT 58.811 50.000 0.00 0.00 0.00 3.96
22 23 0.899717 GGTTTGGGAATCAGCCTGCA 60.900 55.000 0.00 0.00 0.00 4.41
23 24 0.899717 TGGTTTGGGAATCAGCCTGC 60.900 55.000 0.00 0.00 0.00 4.85
24 25 0.890683 GTGGTTTGGGAATCAGCCTG 59.109 55.000 0.00 0.00 0.00 4.85
25 26 0.251787 GGTGGTTTGGGAATCAGCCT 60.252 55.000 0.00 0.00 38.21 4.58
26 27 0.251787 AGGTGGTTTGGGAATCAGCC 60.252 55.000 0.00 0.00 43.69 4.85
27 28 2.507407 TAGGTGGTTTGGGAATCAGC 57.493 50.000 0.00 0.00 43.13 4.26
28 29 3.290710 CCATAGGTGGTTTGGGAATCAG 58.709 50.000 0.00 0.00 40.83 2.90
29 30 3.380471 CCATAGGTGGTTTGGGAATCA 57.620 47.619 0.00 0.00 40.83 2.57
35 36 1.381191 GGGCCCATAGGTGGTTTGG 60.381 63.158 19.95 0.00 44.48 3.28
36 37 0.395724 GAGGGCCCATAGGTGGTTTG 60.396 60.000 27.56 0.00 44.48 2.93
37 38 0.552615 AGAGGGCCCATAGGTGGTTT 60.553 55.000 27.56 0.00 44.48 3.27
38 39 0.988678 GAGAGGGCCCATAGGTGGTT 60.989 60.000 27.56 0.00 44.48 3.67
39 40 1.384643 GAGAGGGCCCATAGGTGGT 60.385 63.158 27.56 0.00 44.48 4.16
40 41 1.384502 TGAGAGGGCCCATAGGTGG 60.385 63.158 27.56 0.00 45.61 4.61
41 42 2.049627 GCTGAGAGGGCCCATAGGTG 62.050 65.000 27.56 10.46 34.57 4.00
42 43 1.768077 GCTGAGAGGGCCCATAGGT 60.768 63.158 27.56 0.88 34.57 3.08
43 44 1.059006 AAGCTGAGAGGGCCCATAGG 61.059 60.000 27.56 10.98 0.00 2.57
44 45 0.396060 GAAGCTGAGAGGGCCCATAG 59.604 60.000 27.56 16.82 0.00 2.23
45 46 0.030705 AGAAGCTGAGAGGGCCCATA 60.031 55.000 27.56 5.78 0.00 2.74
46 47 1.307691 AGAAGCTGAGAGGGCCCAT 60.308 57.895 27.56 12.88 0.00 4.00
47 48 2.123632 AGAAGCTGAGAGGGCCCA 59.876 61.111 27.56 0.70 0.00 5.36
48 49 0.978146 TACAGAAGCTGAGAGGGCCC 60.978 60.000 16.46 16.46 35.18 5.80
49 50 0.905357 TTACAGAAGCTGAGAGGGCC 59.095 55.000 0.00 0.00 35.18 5.80
50 51 2.998316 ATTACAGAAGCTGAGAGGGC 57.002 50.000 0.82 0.00 35.18 5.19
51 52 3.432890 GGGAATTACAGAAGCTGAGAGGG 60.433 52.174 0.82 0.00 35.18 4.30
52 53 3.432890 GGGGAATTACAGAAGCTGAGAGG 60.433 52.174 0.82 0.00 35.18 3.69
53 54 3.454082 AGGGGAATTACAGAAGCTGAGAG 59.546 47.826 0.82 0.00 35.18 3.20
54 55 3.454858 AGGGGAATTACAGAAGCTGAGA 58.545 45.455 0.82 0.00 35.18 3.27
55 56 3.922171 AGGGGAATTACAGAAGCTGAG 57.078 47.619 0.82 0.00 35.18 3.35
56 57 5.975988 ATTAGGGGAATTACAGAAGCTGA 57.024 39.130 0.82 0.00 35.18 4.26
57 58 5.300286 CCAATTAGGGGAATTACAGAAGCTG 59.700 44.000 0.00 0.00 35.45 4.24
58 59 5.193728 TCCAATTAGGGGAATTACAGAAGCT 59.806 40.000 0.00 0.00 35.45 3.74
59 60 5.445964 TCCAATTAGGGGAATTACAGAAGC 58.554 41.667 0.00 0.00 35.45 3.86
60 61 8.539117 AAATCCAATTAGGGGAATTACAGAAG 57.461 34.615 0.00 0.00 38.09 2.85
61 62 8.343787 AGAAATCCAATTAGGGGAATTACAGAA 58.656 33.333 0.00 0.00 38.09 3.02
62 63 7.882755 AGAAATCCAATTAGGGGAATTACAGA 58.117 34.615 0.00 0.00 38.09 3.41
63 64 7.779798 TGAGAAATCCAATTAGGGGAATTACAG 59.220 37.037 0.00 0.00 38.09 2.74
64 65 7.647827 TGAGAAATCCAATTAGGGGAATTACA 58.352 34.615 0.00 0.00 38.09 2.41
65 66 8.533569 TTGAGAAATCCAATTAGGGGAATTAC 57.466 34.615 0.00 0.00 38.09 1.89
66 67 8.565239 TCTTGAGAAATCCAATTAGGGGAATTA 58.435 33.333 0.00 0.00 38.09 1.40
67 68 7.421684 TCTTGAGAAATCCAATTAGGGGAATT 58.578 34.615 0.00 0.00 38.09 2.17
68 69 6.985225 TCTTGAGAAATCCAATTAGGGGAAT 58.015 36.000 0.00 0.00 38.09 3.01
69 70 6.401537 TCTTGAGAAATCCAATTAGGGGAA 57.598 37.500 0.00 0.00 38.09 3.97
70 71 6.596869 ATCTTGAGAAATCCAATTAGGGGA 57.403 37.500 0.00 0.00 39.14 4.81
71 72 6.266330 GGAATCTTGAGAAATCCAATTAGGGG 59.734 42.308 9.91 0.00 38.24 4.79
72 73 6.016777 CGGAATCTTGAGAAATCCAATTAGGG 60.017 42.308 13.40 0.00 38.24 3.53
73 74 6.543831 ACGGAATCTTGAGAAATCCAATTAGG 59.456 38.462 13.40 0.00 35.22 2.69
74 75 7.559590 ACGGAATCTTGAGAAATCCAATTAG 57.440 36.000 13.40 3.44 35.22 1.73
75 76 7.938140 AACGGAATCTTGAGAAATCCAATTA 57.062 32.000 13.40 0.00 35.22 1.40
76 77 6.840780 AACGGAATCTTGAGAAATCCAATT 57.159 33.333 13.40 6.82 35.22 2.32
77 78 6.840780 AAACGGAATCTTGAGAAATCCAAT 57.159 33.333 13.40 2.52 35.22 3.16
78 79 6.264292 TCAAAACGGAATCTTGAGAAATCCAA 59.736 34.615 13.40 0.00 35.22 3.53
79 80 5.767665 TCAAAACGGAATCTTGAGAAATCCA 59.232 36.000 13.40 0.00 35.22 3.41
80 81 6.254281 TCAAAACGGAATCTTGAGAAATCC 57.746 37.500 6.27 6.27 33.37 3.01
85 86 9.056005 CCATATATTCAAAACGGAATCTTGAGA 57.944 33.333 0.00 0.00 38.41 3.27
86 87 9.056005 TCCATATATTCAAAACGGAATCTTGAG 57.944 33.333 0.00 0.00 38.41 3.02
87 88 8.972458 TCCATATATTCAAAACGGAATCTTGA 57.028 30.769 0.00 0.00 38.41 3.02
88 89 8.840321 ACTCCATATATTCAAAACGGAATCTTG 58.160 33.333 0.00 0.00 38.41 3.02
89 90 8.980481 ACTCCATATATTCAAAACGGAATCTT 57.020 30.769 0.00 0.00 38.41 2.40
90 91 9.490379 GTACTCCATATATTCAAAACGGAATCT 57.510 33.333 0.00 0.00 38.41 2.40
91 92 9.490379 AGTACTCCATATATTCAAAACGGAATC 57.510 33.333 0.00 0.00 38.41 2.52
93 94 9.976511 CTAGTACTCCATATATTCAAAACGGAA 57.023 33.333 0.00 0.00 0.00 4.30
94 95 9.358406 TCTAGTACTCCATATATTCAAAACGGA 57.642 33.333 0.00 0.00 0.00 4.69
117 118 5.366477 TCCTGACATGCTACCAATCAATCTA 59.634 40.000 0.00 0.00 0.00 1.98
125 126 4.408596 TGTATCATCCTGACATGCTACCAA 59.591 41.667 0.00 0.00 28.30 3.67
160 161 9.047947 ACAAAGATATCTGGTTAGGAAGTACTT 57.952 33.333 8.13 8.13 0.00 2.24
193 195 5.907197 ATGATAAGTGAATAAAGCGTCCG 57.093 39.130 0.00 0.00 0.00 4.79
197 199 9.911980 CATGCTATATGATAAGTGAATAAAGCG 57.088 33.333 0.00 0.00 0.00 4.68
267 269 1.410004 TATTCACACTAGGGAGGGCG 58.590 55.000 0.00 0.00 0.00 6.13
281 297 6.110033 ACCATGCATTGTAGTACGTTATTCA 58.890 36.000 0.69 0.00 0.00 2.57
292 308 2.445427 TGTTGGGACCATGCATTGTAG 58.555 47.619 2.94 0.00 0.00 2.74
293 309 2.560542 GTTGTTGGGACCATGCATTGTA 59.439 45.455 2.94 0.00 0.00 2.41
294 310 1.344114 GTTGTTGGGACCATGCATTGT 59.656 47.619 2.50 2.50 0.00 2.71
308 324 1.596954 GCACGTAAGCTGTGGTTGTTG 60.597 52.381 4.98 0.00 45.62 3.33
309 325 0.661020 GCACGTAAGCTGTGGTTGTT 59.339 50.000 4.98 0.00 45.62 2.83
312 328 1.164041 GGTGCACGTAAGCTGTGGTT 61.164 55.000 11.45 0.00 45.62 3.67
317 333 2.357034 ACCGGTGCACGTAAGCTG 60.357 61.111 6.12 0.00 42.24 4.24
319 335 3.475774 CGACCGGTGCACGTAAGC 61.476 66.667 14.63 0.00 42.24 3.09
438 458 7.473366 TCGTGTTTTGTTCAAAGTGCTATTTA 58.527 30.769 0.00 0.00 0.00 1.40
473 493 4.333926 GGGATATCTCTGTTGTTCTTGCAC 59.666 45.833 2.05 0.00 0.00 4.57
525 545 4.143543 ACAATCACCACATCACACATGAA 58.856 39.130 0.00 0.00 38.69 2.57
533 553 3.608316 TGATCGACAATCACCACATCA 57.392 42.857 0.00 0.00 39.52 3.07
534 554 4.333649 ACAATGATCGACAATCACCACATC 59.666 41.667 0.00 0.00 47.00 3.06
602 627 2.986479 GTTGATTGCAAATTCGGTGACC 59.014 45.455 1.71 0.00 35.42 4.02
628 742 3.256383 TGAACAAGTGATTGCCCATCTTG 59.744 43.478 0.00 0.00 40.54 3.02
714 832 5.333581 TCTGACTCTGAAATCCTGGAGTTA 58.666 41.667 9.67 0.00 38.87 2.24
789 909 2.100197 GGGAAGGTGGAATTAGTTGGC 58.900 52.381 0.00 0.00 0.00 4.52
908 1041 0.171231 GCTTTTCTTGGGTCGGATGC 59.829 55.000 0.00 0.00 0.00 3.91
979 1126 4.838486 GGTCACCGCTCTCGCTCG 62.838 72.222 0.00 0.00 0.00 5.03
1110 1257 2.216046 CCGCTGATGTAGTTCATGCAT 58.784 47.619 0.00 0.00 36.88 3.96
1396 1546 1.876416 GCTACCCAAGAAGCGACAACA 60.876 52.381 0.00 0.00 0.00 3.33
1400 1550 0.246635 TCAGCTACCCAAGAAGCGAC 59.753 55.000 0.00 0.00 43.63 5.19
1414 1564 0.250467 AAAGATGCCACGTGTCAGCT 60.250 50.000 12.14 12.14 0.00 4.24
1424 1574 1.271379 CTGCAAGCAGAAAAGATGCCA 59.729 47.619 16.75 0.00 46.30 4.92
1651 1802 1.598130 AGCAAGCGTTCCAGTCCAC 60.598 57.895 0.00 0.00 0.00 4.02
1799 1964 9.665264 GTAAAAAGTGTTGACTCTTCTTATTGG 57.335 33.333 0.00 0.00 0.00 3.16
1874 2050 8.539544 AGTTTGATTAAATGGGGTAAAATGAGG 58.460 33.333 0.00 0.00 0.00 3.86
1875 2051 9.942850 AAGTTTGATTAAATGGGGTAAAATGAG 57.057 29.630 0.00 0.00 0.00 2.90
1888 2064 7.895759 AGTGTGTGGCATAAGTTTGATTAAAT 58.104 30.769 0.00 0.00 0.00 1.40
1894 2070 4.069304 GGTAGTGTGTGGCATAAGTTTGA 58.931 43.478 0.00 0.00 0.00 2.69
1936 2113 5.318630 ACTTACCCCGCAAGAAAAATAGAA 58.681 37.500 0.00 0.00 43.02 2.10
1946 2123 8.617290 AAATAGAATATAACTTACCCCGCAAG 57.383 34.615 0.00 0.00 0.00 4.01
1972 2246 2.669364 GGCTTGACAGAACATGCTTTG 58.331 47.619 0.00 0.00 39.67 2.77
1983 2257 1.961277 GGTGTGACCGGCTTGACAG 60.961 63.158 0.00 0.00 0.00 3.51
2003 2277 1.599542 GAACGCCATATGAGCCTTGAC 59.400 52.381 3.65 0.00 0.00 3.18
2005 2279 0.947244 GGAACGCCATATGAGCCTTG 59.053 55.000 3.65 0.00 0.00 3.61
2006 2280 0.546122 TGGAACGCCATATGAGCCTT 59.454 50.000 3.65 2.57 39.92 4.35
2031 2305 3.634910 ACCAAACGCATAAGAAAACCAGT 59.365 39.130 0.00 0.00 0.00 4.00
2068 2342 4.424711 GAATCAGGCGGGTGGGCA 62.425 66.667 0.00 0.00 45.36 5.36
2080 2354 1.071071 ACCGAACCAAAGGACGAATCA 59.929 47.619 0.00 0.00 0.00 2.57
2091 2365 2.875933 GACATGAGTCAAACCGAACCAA 59.124 45.455 0.00 0.00 44.34 3.67
2092 2366 2.489971 GACATGAGTCAAACCGAACCA 58.510 47.619 0.00 0.00 44.34 3.67
2111 2385 1.957177 GAGATGCGATGTAGGACCAGA 59.043 52.381 0.00 0.00 0.00 3.86
2113 2387 1.683385 CAGAGATGCGATGTAGGACCA 59.317 52.381 0.00 0.00 0.00 4.02
2183 2545 0.034767 CAGCTGGCCAAGAATCCTGA 60.035 55.000 7.01 0.00 0.00 3.86
2214 2576 1.152756 GGGTGTGCCTGGTTCAAGT 60.153 57.895 0.00 0.00 34.45 3.16
2218 2580 0.251341 ATCTTGGGTGTGCCTGGTTC 60.251 55.000 0.00 0.00 34.45 3.62
2222 2584 3.573967 AGTTTTAATCTTGGGTGTGCCTG 59.426 43.478 0.00 0.00 34.45 4.85
2236 2602 6.855914 CGACACAGTGTATGCAAAGTTTTAAT 59.144 34.615 6.06 0.00 0.00 1.40
2242 2608 1.531149 GCGACACAGTGTATGCAAAGT 59.469 47.619 20.37 0.00 33.58 2.66
2257 2623 2.177531 GTAGAAGGCGACGCGACA 59.822 61.111 15.93 0.00 37.34 4.35
2260 2626 3.753070 GAGGGTAGAAGGCGACGCG 62.753 68.421 14.61 3.53 37.59 6.01
2336 2702 0.104671 GTGCAACAAGTTGGCATGGT 59.895 50.000 14.16 0.00 40.74 3.55
2347 2732 4.251771 TACCCGCCGGTGCAACAA 62.252 61.111 10.27 0.00 44.40 2.83
2360 2745 2.359900 CATGCTGGTCTTCAAGTACCC 58.640 52.381 4.22 0.00 34.69 3.69
2361 2746 1.740025 GCATGCTGGTCTTCAAGTACC 59.260 52.381 11.37 0.38 36.24 3.34
2375 2760 0.883833 GTGTAACAGCTTGGCATGCT 59.116 50.000 20.91 20.91 42.06 3.79
2377 2762 0.168788 CGGTGTAACAGCTTGGCATG 59.831 55.000 0.00 0.00 39.98 4.06
2378 2763 0.036164 TCGGTGTAACAGCTTGGCAT 59.964 50.000 0.00 0.00 39.98 4.40
2379 2764 0.882927 GTCGGTGTAACAGCTTGGCA 60.883 55.000 0.00 0.00 39.98 4.92
2380 2765 0.882927 TGTCGGTGTAACAGCTTGGC 60.883 55.000 0.00 0.00 39.98 4.52
2381 2766 0.865769 GTGTCGGTGTAACAGCTTGG 59.134 55.000 0.00 0.00 39.98 3.61
2382 2767 0.506932 CGTGTCGGTGTAACAGCTTG 59.493 55.000 0.00 0.00 39.98 4.01
2383 2768 0.386476 TCGTGTCGGTGTAACAGCTT 59.614 50.000 0.00 0.00 39.98 3.74
2384 2769 0.318445 GTCGTGTCGGTGTAACAGCT 60.318 55.000 0.00 0.00 39.98 4.24
2385 2770 1.602877 CGTCGTGTCGGTGTAACAGC 61.603 60.000 0.00 0.00 39.98 4.40
2386 2771 0.041047 TCGTCGTGTCGGTGTAACAG 60.041 55.000 0.00 0.00 39.98 3.16
2387 2772 0.316937 GTCGTCGTGTCGGTGTAACA 60.317 55.000 0.00 0.00 39.98 2.41
2388 2773 0.998727 GGTCGTCGTGTCGGTGTAAC 60.999 60.000 0.00 0.00 0.00 2.50
2389 2774 1.282570 GGTCGTCGTGTCGGTGTAA 59.717 57.895 0.00 0.00 0.00 2.41
2391 2776 4.318021 CGGTCGTCGTGTCGGTGT 62.318 66.667 0.00 0.00 0.00 4.16
2392 2777 1.969809 TATCGGTCGTCGTGTCGGTG 61.970 60.000 0.00 0.00 40.32 4.94
2393 2778 1.298157 TTATCGGTCGTCGTGTCGGT 61.298 55.000 0.00 0.00 40.32 4.69
2403 2790 0.030908 GCTCTGGAGGTTATCGGTCG 59.969 60.000 0.00 0.00 0.00 4.79
2405 2792 1.115467 CTGCTCTGGAGGTTATCGGT 58.885 55.000 0.00 0.00 0.00 4.69
2416 2803 0.250640 ACTTGTTGCTCCTGCTCTGG 60.251 55.000 0.00 0.00 40.48 3.86
2417 2804 1.266175 CAACTTGTTGCTCCTGCTCTG 59.734 52.381 0.31 0.00 40.48 3.35
2420 2807 1.133976 AGTCAACTTGTTGCTCCTGCT 60.134 47.619 8.48 0.00 40.48 4.24
2421 2808 1.002033 CAGTCAACTTGTTGCTCCTGC 60.002 52.381 8.48 0.00 40.20 4.85
2432 2851 3.565307 TGAAGAAATGGCCAGTCAACTT 58.435 40.909 13.05 15.03 0.00 2.66
2433 2852 3.228188 TGAAGAAATGGCCAGTCAACT 57.772 42.857 13.05 6.63 0.00 3.16
2469 2888 1.736645 CACGCTTCGTTCCACCGAT 60.737 57.895 0.00 0.00 38.32 4.18
2470 2889 2.355363 CACGCTTCGTTCCACCGA 60.355 61.111 0.00 0.00 38.32 4.69
2471 2890 3.411351 CCACGCTTCGTTCCACCG 61.411 66.667 0.00 0.00 38.32 4.94
2474 2893 1.006571 GTCTCCACGCTTCGTTCCA 60.007 57.895 0.00 0.00 38.32 3.53
2475 2894 0.389948 ATGTCTCCACGCTTCGTTCC 60.390 55.000 0.00 0.00 38.32 3.62
2476 2895 0.992802 GATGTCTCCACGCTTCGTTC 59.007 55.000 0.00 0.00 38.32 3.95
2477 2896 0.732880 CGATGTCTCCACGCTTCGTT 60.733 55.000 0.00 0.00 38.32 3.85
2478 2897 1.154016 CGATGTCTCCACGCTTCGT 60.154 57.895 0.00 0.00 42.36 3.85
2480 2899 1.078759 CCACGATGTCTCCACGCTTC 61.079 60.000 0.00 0.00 0.00 3.86
2481 2900 1.079819 CCACGATGTCTCCACGCTT 60.080 57.895 0.00 0.00 0.00 4.68
2482 2901 1.938657 CTCCACGATGTCTCCACGCT 61.939 60.000 0.00 0.00 0.00 5.07
2483 2902 1.517257 CTCCACGATGTCTCCACGC 60.517 63.158 0.00 0.00 0.00 5.34
2484 2903 0.179161 GACTCCACGATGTCTCCACG 60.179 60.000 0.00 0.00 0.00 4.94
2485 2904 0.888619 TGACTCCACGATGTCTCCAC 59.111 55.000 0.00 0.00 34.57 4.02
2487 2906 0.457851 CCTGACTCCACGATGTCTCC 59.542 60.000 0.00 0.00 34.57 3.71
2488 2907 0.457851 CCCTGACTCCACGATGTCTC 59.542 60.000 0.00 0.00 34.57 3.36
2489 2908 0.251832 ACCCTGACTCCACGATGTCT 60.252 55.000 0.00 0.00 34.57 3.41
2490 2909 0.608640 AACCCTGACTCCACGATGTC 59.391 55.000 0.00 0.00 0.00 3.06
2492 2911 0.608130 TGAACCCTGACTCCACGATG 59.392 55.000 0.00 0.00 0.00 3.84
2495 2914 1.442769 CAATGAACCCTGACTCCACG 58.557 55.000 0.00 0.00 0.00 4.94
2496 2915 1.073923 ACCAATGAACCCTGACTCCAC 59.926 52.381 0.00 0.00 0.00 4.02
2497 2916 1.073763 CACCAATGAACCCTGACTCCA 59.926 52.381 0.00 0.00 0.00 3.86
2498 2917 1.073923 ACACCAATGAACCCTGACTCC 59.926 52.381 0.00 0.00 0.00 3.85
2499 2918 2.554032 CAACACCAATGAACCCTGACTC 59.446 50.000 0.00 0.00 0.00 3.36
2500 2919 2.091885 ACAACACCAATGAACCCTGACT 60.092 45.455 0.00 0.00 0.00 3.41
2501 2920 2.034558 CACAACACCAATGAACCCTGAC 59.965 50.000 0.00 0.00 0.00 3.51
2502 2921 2.305928 CACAACACCAATGAACCCTGA 58.694 47.619 0.00 0.00 0.00 3.86
2503 2922 2.031120 ACACAACACCAATGAACCCTG 58.969 47.619 0.00 0.00 0.00 4.45
2504 2923 2.452600 ACACAACACCAATGAACCCT 57.547 45.000 0.00 0.00 0.00 4.34
2505 2924 4.279671 TCATTACACAACACCAATGAACCC 59.720 41.667 0.00 0.00 35.15 4.11
2506 2925 5.446143 TCATTACACAACACCAATGAACC 57.554 39.130 0.00 0.00 35.15 3.62
2508 2927 7.282332 TGATTCATTACACAACACCAATGAA 57.718 32.000 10.09 10.09 46.00 2.57
2509 2928 6.890979 TGATTCATTACACAACACCAATGA 57.109 33.333 0.00 0.00 36.02 2.57
2512 2931 6.890979 TGATGATTCATTACACAACACCAA 57.109 33.333 0.00 0.00 0.00 3.67
2513 2932 6.658391 TCATGATGATTCATTACACAACACCA 59.342 34.615 0.00 0.00 40.70 4.17
2514 2933 7.066163 TCTCATGATGATTCATTACACAACACC 59.934 37.037 0.00 0.00 40.70 4.16
2522 6210 8.893219 TTACTGGTCTCATGATGATTCATTAC 57.107 34.615 0.00 0.00 40.70 1.89
2525 6213 7.799081 TCTTTACTGGTCTCATGATGATTCAT 58.201 34.615 0.00 0.00 43.51 2.57
2526 6214 7.186570 TCTTTACTGGTCTCATGATGATTCA 57.813 36.000 0.00 0.00 36.00 2.57
2527 6215 7.984050 TCTTCTTTACTGGTCTCATGATGATTC 59.016 37.037 0.00 0.00 0.00 2.52
2529 6217 7.429374 TCTTCTTTACTGGTCTCATGATGAT 57.571 36.000 0.00 0.00 0.00 2.45
2538 6226 5.544562 AGCCTAACTTCTTCTTTACTGGTCT 59.455 40.000 0.00 0.00 0.00 3.85
2539 6227 5.795972 AGCCTAACTTCTTCTTTACTGGTC 58.204 41.667 0.00 0.00 0.00 4.02
2540 6228 5.567025 CGAGCCTAACTTCTTCTTTACTGGT 60.567 44.000 0.00 0.00 0.00 4.00
2541 6229 4.865365 CGAGCCTAACTTCTTCTTTACTGG 59.135 45.833 0.00 0.00 0.00 4.00
2542 6230 5.573669 GTCGAGCCTAACTTCTTCTTTACTG 59.426 44.000 0.00 0.00 0.00 2.74
2543 6231 5.243283 TGTCGAGCCTAACTTCTTCTTTACT 59.757 40.000 0.00 0.00 0.00 2.24
2544 6232 5.345472 GTGTCGAGCCTAACTTCTTCTTTAC 59.655 44.000 0.00 0.00 0.00 2.01
2545 6233 5.010314 TGTGTCGAGCCTAACTTCTTCTTTA 59.990 40.000 0.00 0.00 0.00 1.85
2546 6234 4.202223 TGTGTCGAGCCTAACTTCTTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
2547 6235 3.321111 TGTGTCGAGCCTAACTTCTTCTT 59.679 43.478 0.00 0.00 0.00 2.52
2548 6236 2.891580 TGTGTCGAGCCTAACTTCTTCT 59.108 45.455 0.00 0.00 0.00 2.85
2550 6238 3.746045 TTGTGTCGAGCCTAACTTCTT 57.254 42.857 0.00 0.00 0.00 2.52
2552 6240 5.049680 TCAAAATTGTGTCGAGCCTAACTTC 60.050 40.000 0.00 0.00 0.00 3.01
2553 6241 4.819630 TCAAAATTGTGTCGAGCCTAACTT 59.180 37.500 0.00 0.00 0.00 2.66
2558 6246 5.957842 TTAATCAAAATTGTGTCGAGCCT 57.042 34.783 0.00 0.00 0.00 4.58
2559 6247 6.034898 CCATTTAATCAAAATTGTGTCGAGCC 59.965 38.462 0.00 0.00 35.54 4.70
2561 6249 6.531240 CCCCATTTAATCAAAATTGTGTCGAG 59.469 38.462 0.00 0.00 35.54 4.04
2564 6252 6.472016 ACCCCCATTTAATCAAAATTGTGTC 58.528 36.000 0.00 0.00 35.54 3.67
2565 6253 6.446909 ACCCCCATTTAATCAAAATTGTGT 57.553 33.333 0.00 0.00 35.54 3.72
2566 6254 8.854614 TTTACCCCCATTTAATCAAAATTGTG 57.145 30.769 0.00 0.00 35.54 3.33
2567 6255 9.290988 GTTTTACCCCCATTTAATCAAAATTGT 57.709 29.630 0.00 0.00 35.54 2.71
2568 6256 8.735315 GGTTTTACCCCCATTTAATCAAAATTG 58.265 33.333 0.00 0.00 31.60 2.32
2569 6257 7.608376 CGGTTTTACCCCCATTTAATCAAAATT 59.392 33.333 0.00 0.00 33.18 1.82
2570 6258 7.038231 TCGGTTTTACCCCCATTTAATCAAAAT 60.038 33.333 0.00 0.00 34.79 1.82
2571 6259 6.269307 TCGGTTTTACCCCCATTTAATCAAAA 59.731 34.615 0.00 0.00 33.75 2.44
2572 6260 5.778750 TCGGTTTTACCCCCATTTAATCAAA 59.221 36.000 0.00 0.00 33.75 2.69
2573 6261 5.331069 TCGGTTTTACCCCCATTTAATCAA 58.669 37.500 0.00 0.00 33.75 2.57
2575 6263 5.595133 TCATCGGTTTTACCCCCATTTAATC 59.405 40.000 0.00 0.00 33.75 1.75
2576 6264 5.520751 TCATCGGTTTTACCCCCATTTAAT 58.479 37.500 0.00 0.00 33.75 1.40
2577 6265 4.931914 TCATCGGTTTTACCCCCATTTAA 58.068 39.130 0.00 0.00 33.75 1.52
2578 6266 4.587976 TCATCGGTTTTACCCCCATTTA 57.412 40.909 0.00 0.00 33.75 1.40
2579 6267 3.459710 TCATCGGTTTTACCCCCATTT 57.540 42.857 0.00 0.00 33.75 2.32
2580 6268 3.459710 TTCATCGGTTTTACCCCCATT 57.540 42.857 0.00 0.00 33.75 3.16
2581 6269 3.459710 TTTCATCGGTTTTACCCCCAT 57.540 42.857 0.00 0.00 33.75 4.00
2582 6270 2.973983 TTTCATCGGTTTTACCCCCA 57.026 45.000 0.00 0.00 33.75 4.96
2583 6271 5.831525 AGATATTTTCATCGGTTTTACCCCC 59.168 40.000 0.00 0.00 33.75 5.40
2589 6277 9.816354 CCCATTTAAGATATTTTCATCGGTTTT 57.184 29.630 0.00 0.00 0.00 2.43
2590 6278 8.421002 CCCCATTTAAGATATTTTCATCGGTTT 58.579 33.333 0.00 0.00 0.00 3.27
2591 6279 7.471399 GCCCCATTTAAGATATTTTCATCGGTT 60.471 37.037 0.00 0.00 0.00 4.44
2592 6280 6.015434 GCCCCATTTAAGATATTTTCATCGGT 60.015 38.462 0.00 0.00 0.00 4.69
2593 6281 6.015519 TGCCCCATTTAAGATATTTTCATCGG 60.016 38.462 0.00 0.00 0.00 4.18
2594 6282 6.980593 TGCCCCATTTAAGATATTTTCATCG 58.019 36.000 0.00 0.00 0.00 3.84
2595 6283 9.428097 GATTGCCCCATTTAAGATATTTTCATC 57.572 33.333 0.00 0.00 0.00 2.92
2597 6285 7.734942 GGATTGCCCCATTTAAGATATTTTCA 58.265 34.615 0.00 0.00 0.00 2.69
2615 6303 3.959535 TCATTTTTGACAGGGATTGCC 57.040 42.857 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.