Multiple sequence alignment - TraesCS5D01G440000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G440000 chr5D 100.000 3807 0 0 1 3807 493448821 493452627 0.000000e+00 7031
1 TraesCS5D01G440000 chr5D 89.286 140 11 4 385 520 368800865 368800726 5.060000e-39 172
2 TraesCS5D01G440000 chr5D 87.097 155 14 2 385 533 326386571 326386417 1.820000e-38 171
3 TraesCS5D01G440000 chr5B 91.951 3342 108 71 564 3807 609192871 609196149 0.000000e+00 4532
4 TraesCS5D01G440000 chr5B 98.718 234 3 0 1 234 633317457 633317224 2.120000e-112 416
5 TraesCS5D01G440000 chr5A 87.400 2635 158 77 556 3113 616546939 616549476 0.000000e+00 2867
6 TraesCS5D01G440000 chr5A 94.356 691 16 9 3133 3807 616557158 616557841 0.000000e+00 1038
7 TraesCS5D01G440000 chr5A 91.603 131 10 1 229 358 616546748 616546878 3.020000e-41 180
8 TraesCS5D01G440000 chr6D 99.130 230 2 0 1 230 26857891 26858120 7.610000e-112 414
9 TraesCS5D01G440000 chr6D 99.130 230 2 0 1 230 26894231 26894460 7.610000e-112 414
10 TraesCS5D01G440000 chr6D 98.712 233 3 0 1 233 51870919 51871151 7.610000e-112 414
11 TraesCS5D01G440000 chr6D 97.899 238 4 1 1 238 18910516 18910280 9.840000e-111 411
12 TraesCS5D01G440000 chr6D 88.435 147 10 5 385 524 2739563 2739417 1.820000e-38 171
13 TraesCS5D01G440000 chr3D 98.298 235 4 0 1 235 13534152 13533918 2.740000e-111 412
14 TraesCS5D01G440000 chr1D 98.305 236 3 1 1 236 451228176 451227942 2.740000e-111 412
15 TraesCS5D01G440000 chr1D 88.811 143 9 5 385 520 482898106 482898248 6.540000e-38 169
16 TraesCS5D01G440000 chr7D 97.899 238 4 1 1 238 634119536 634119300 9.840000e-111 411
17 TraesCS5D01G440000 chr4D 97.119 243 4 3 1 242 463111240 463111480 1.270000e-109 407
18 TraesCS5D01G440000 chr7A 90.580 138 7 4 389 520 3996625 3996488 1.090000e-40 178
19 TraesCS5D01G440000 chr7A 89.147 129 10 4 225 352 23184245 23184370 1.420000e-34 158
20 TraesCS5D01G440000 chrUn 89.510 143 8 3 385 520 240150115 240150257 1.410000e-39 174
21 TraesCS5D01G440000 chrUn 89.510 143 8 3 385 520 263944530 263944388 1.410000e-39 174
22 TraesCS5D01G440000 chr6B 89.362 141 10 4 385 520 162604883 162605023 5.060000e-39 172
23 TraesCS5D01G440000 chr4B 87.013 154 12 5 385 530 11572485 11572332 2.350000e-37 167
24 TraesCS5D01G440000 chr2B 93.827 81 4 1 229 308 521508159 521508239 1.860000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G440000 chr5D 493448821 493452627 3806 False 7031.0 7031 100.0000 1 3807 1 chr5D.!!$F1 3806
1 TraesCS5D01G440000 chr5B 609192871 609196149 3278 False 4532.0 4532 91.9510 564 3807 1 chr5B.!!$F1 3243
2 TraesCS5D01G440000 chr5A 616546748 616549476 2728 False 1523.5 2867 89.5015 229 3113 2 chr5A.!!$F2 2884
3 TraesCS5D01G440000 chr5A 616557158 616557841 683 False 1038.0 1038 94.3560 3133 3807 1 chr5A.!!$F1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.032952 GAAAACCGGGACAAAAGGCC 59.967 55.0 6.32 0.00 0.00 5.19 F
207 208 0.038021 GCCCTTACAAACCGGGGTAA 59.962 55.0 6.32 10.72 40.86 2.85 F
1704 1757 0.099968 TTCAGCGACGAGGTTATCCG 59.900 55.0 0.00 0.00 39.05 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2189 2251 0.530870 CTTAGGCGCTTAGGTCCAGC 60.531 60.0 7.64 0.00 0.00 4.85 R
2193 2255 0.107848 TTGGCTTAGGCGCTTAGGTC 60.108 55.0 7.64 6.88 39.81 3.85 R
2946 3054 0.451135 GCACGAACACAAGCATCGTC 60.451 55.0 0.00 0.00 45.84 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.532238 GGTCCTGCCTATTGGTCCC 59.468 63.158 0.00 0.00 35.27 4.46
30 31 1.146263 GTCCTGCCTATTGGTCCCG 59.854 63.158 0.00 0.00 35.27 5.14
31 32 2.070039 TCCTGCCTATTGGTCCCGG 61.070 63.158 0.00 0.00 35.27 5.73
32 33 2.375345 CCTGCCTATTGGTCCCGGT 61.375 63.158 0.00 0.00 35.27 5.28
33 34 1.607612 CTGCCTATTGGTCCCGGTT 59.392 57.895 0.00 0.00 35.27 4.44
34 35 0.748005 CTGCCTATTGGTCCCGGTTG 60.748 60.000 0.00 0.00 35.27 3.77
35 36 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
36 37 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
37 38 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
38 39 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
39 40 2.487274 TATTGGTCCCGGTTGGTGGC 62.487 60.000 0.00 0.00 34.77 5.01
54 55 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
55 56 2.519780 GCACCAACCGGGACCAAA 60.520 61.111 6.32 0.00 41.15 3.28
56 57 2.561037 GCACCAACCGGGACCAAAG 61.561 63.158 6.32 0.00 41.15 2.77
57 58 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
58 59 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
59 60 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
60 61 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
100 101 3.637273 GGCCACGTGGAGGACCTT 61.637 66.667 38.30 0.00 37.39 3.50
101 102 2.047179 GCCACGTGGAGGACCTTC 60.047 66.667 38.30 13.83 37.39 3.46
102 103 2.584391 GCCACGTGGAGGACCTTCT 61.584 63.158 38.30 0.00 37.39 2.85
103 104 1.293498 CCACGTGGAGGACCTTCTG 59.707 63.158 31.31 0.00 37.39 3.02
104 105 1.472662 CCACGTGGAGGACCTTCTGT 61.473 60.000 31.31 0.00 37.39 3.41
105 106 0.038159 CACGTGGAGGACCTTCTGTC 60.038 60.000 7.95 0.00 43.67 3.51
113 114 3.347411 GACCTTCTGTCCCGATTCG 57.653 57.895 0.00 0.00 38.09 3.34
114 115 0.531200 GACCTTCTGTCCCGATTCGT 59.469 55.000 5.20 0.00 38.09 3.85
115 116 0.246635 ACCTTCTGTCCCGATTCGTG 59.753 55.000 5.20 0.00 0.00 4.35
116 117 0.246635 CCTTCTGTCCCGATTCGTGT 59.753 55.000 5.20 0.00 0.00 4.49
117 118 1.475280 CCTTCTGTCCCGATTCGTGTA 59.525 52.381 5.20 0.00 0.00 2.90
118 119 2.094390 CCTTCTGTCCCGATTCGTGTAA 60.094 50.000 5.20 0.00 0.00 2.41
119 120 2.933495 TCTGTCCCGATTCGTGTAAG 57.067 50.000 5.20 0.00 0.00 2.34
120 121 2.439409 TCTGTCCCGATTCGTGTAAGA 58.561 47.619 5.20 0.57 0.00 2.10
121 122 2.821378 TCTGTCCCGATTCGTGTAAGAA 59.179 45.455 5.20 0.00 34.31 2.52
122 123 2.921754 CTGTCCCGATTCGTGTAAGAAC 59.078 50.000 5.20 0.00 32.39 3.01
123 124 2.265683 GTCCCGATTCGTGTAAGAACC 58.734 52.381 5.20 0.00 32.39 3.62
124 125 1.135315 TCCCGATTCGTGTAAGAACCG 60.135 52.381 5.20 0.00 36.92 4.44
126 127 1.274596 CGATTCGTGTAAGAACCGGG 58.725 55.000 6.32 0.00 33.72 5.73
127 128 1.135315 CGATTCGTGTAAGAACCGGGA 60.135 52.381 6.32 0.00 33.72 5.14
128 129 2.265683 GATTCGTGTAAGAACCGGGAC 58.734 52.381 6.32 0.00 32.39 4.46
129 130 1.331214 TTCGTGTAAGAACCGGGACT 58.669 50.000 6.32 0.73 0.00 3.85
130 131 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
131 132 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
132 133 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
133 134 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
134 135 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
135 136 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
136 137 1.738474 AAGAACCGGGACTAAAGGGT 58.262 50.000 6.32 0.00 0.00 4.34
137 138 1.738474 AGAACCGGGACTAAAGGGTT 58.262 50.000 6.32 0.00 45.02 4.11
138 139 2.906568 AGAACCGGGACTAAAGGGTTA 58.093 47.619 6.32 0.00 42.54 2.85
139 140 2.836372 AGAACCGGGACTAAAGGGTTAG 59.164 50.000 6.32 0.00 42.54 2.34
140 141 1.576577 ACCGGGACTAAAGGGTTAGG 58.423 55.000 6.32 0.00 41.03 2.69
141 142 0.835276 CCGGGACTAAAGGGTTAGGG 59.165 60.000 0.00 0.00 41.03 3.53
142 143 0.179702 CGGGACTAAAGGGTTAGGGC 59.820 60.000 0.00 0.00 41.03 5.19
143 144 1.592948 GGGACTAAAGGGTTAGGGCT 58.407 55.000 0.00 0.00 41.03 5.19
144 145 1.921049 GGGACTAAAGGGTTAGGGCTT 59.079 52.381 0.00 0.00 41.03 4.35
145 146 2.310945 GGGACTAAAGGGTTAGGGCTTT 59.689 50.000 0.00 0.00 41.03 3.51
146 147 3.524789 GGGACTAAAGGGTTAGGGCTTTA 59.475 47.826 0.00 0.00 41.03 1.85
147 148 4.384978 GGGACTAAAGGGTTAGGGCTTTAG 60.385 50.000 1.97 1.97 41.03 1.85
149 150 5.426509 GGACTAAAGGGTTAGGGCTTTAGTA 59.573 44.000 6.31 0.00 46.28 1.82
150 151 6.070021 GGACTAAAGGGTTAGGGCTTTAGTAA 60.070 42.308 6.31 0.00 46.28 2.24
151 152 6.715280 ACTAAAGGGTTAGGGCTTTAGTAAC 58.285 40.000 5.23 0.00 45.23 2.50
152 153 3.900966 AGGGTTAGGGCTTTAGTAACG 57.099 47.619 0.00 0.00 0.00 3.18
153 154 3.444029 AGGGTTAGGGCTTTAGTAACGA 58.556 45.455 0.00 0.00 0.00 3.85
154 155 3.196469 AGGGTTAGGGCTTTAGTAACGAC 59.804 47.826 0.00 0.00 0.00 4.34
155 156 3.525537 GGTTAGGGCTTTAGTAACGACC 58.474 50.000 2.95 2.95 0.00 4.79
156 157 3.525537 GTTAGGGCTTTAGTAACGACCC 58.474 50.000 7.64 8.73 37.63 4.46
157 158 1.948391 AGGGCTTTAGTAACGACCCT 58.052 50.000 7.64 10.62 42.97 4.34
158 159 2.263545 AGGGCTTTAGTAACGACCCTT 58.736 47.619 7.64 0.00 45.55 3.95
159 160 2.641321 AGGGCTTTAGTAACGACCCTTT 59.359 45.455 7.64 0.00 45.55 3.11
160 161 3.840078 AGGGCTTTAGTAACGACCCTTTA 59.160 43.478 7.64 0.00 45.55 1.85
161 162 4.081254 AGGGCTTTAGTAACGACCCTTTAG 60.081 45.833 7.64 0.00 45.55 1.85
162 163 4.323028 GGGCTTTAGTAACGACCCTTTAGT 60.323 45.833 0.00 0.00 34.34 2.24
163 164 4.867047 GGCTTTAGTAACGACCCTTTAGTC 59.133 45.833 0.00 0.00 0.00 2.59
164 165 4.867047 GCTTTAGTAACGACCCTTTAGTCC 59.133 45.833 0.00 0.00 32.91 3.85
165 166 5.405935 TTTAGTAACGACCCTTTAGTCCC 57.594 43.478 0.00 0.00 32.91 4.46
166 167 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
167 168 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
168 169 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
169 170 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
170 171 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
171 172 0.108472 GACCCTTTAGTCCCGGTTCG 60.108 60.000 0.00 0.00 0.00 3.95
172 173 0.542702 ACCCTTTAGTCCCGGTTCGA 60.543 55.000 0.00 0.00 0.00 3.71
173 174 0.609662 CCCTTTAGTCCCGGTTCGAA 59.390 55.000 0.00 0.00 0.00 3.71
174 175 1.002315 CCCTTTAGTCCCGGTTCGAAA 59.998 52.381 0.00 1.13 0.00 3.46
175 176 2.550639 CCCTTTAGTCCCGGTTCGAAAA 60.551 50.000 0.00 0.00 0.00 2.29
176 177 2.481568 CCTTTAGTCCCGGTTCGAAAAC 59.518 50.000 0.00 0.00 34.46 2.43
183 184 4.460529 GGTTCGAAAACCGGGACA 57.539 55.556 6.32 0.00 45.33 4.02
184 185 2.705371 GGTTCGAAAACCGGGACAA 58.295 52.632 6.32 0.00 45.33 3.18
185 186 1.023502 GGTTCGAAAACCGGGACAAA 58.976 50.000 6.32 0.00 45.33 2.83
186 187 1.404748 GGTTCGAAAACCGGGACAAAA 59.595 47.619 6.32 0.00 45.33 2.44
187 188 2.542205 GGTTCGAAAACCGGGACAAAAG 60.542 50.000 6.32 0.00 45.33 2.27
188 189 1.310904 TCGAAAACCGGGACAAAAGG 58.689 50.000 6.32 0.00 39.14 3.11
189 190 0.318360 CGAAAACCGGGACAAAAGGC 60.318 55.000 6.32 0.00 33.91 4.35
190 191 0.032952 GAAAACCGGGACAAAAGGCC 59.967 55.000 6.32 0.00 0.00 5.19
191 192 1.404479 AAAACCGGGACAAAAGGCCC 61.404 55.000 6.32 0.00 41.11 5.80
192 193 2.306715 AAACCGGGACAAAAGGCCCT 62.307 55.000 6.32 0.00 42.40 5.19
193 194 2.117423 CCGGGACAAAAGGCCCTT 59.883 61.111 4.64 0.00 42.40 3.95
194 195 1.381076 CCGGGACAAAAGGCCCTTA 59.619 57.895 4.64 0.00 42.40 2.69
195 196 0.963856 CCGGGACAAAAGGCCCTTAC 60.964 60.000 4.64 0.00 42.40 2.34
196 197 0.250989 CGGGACAAAAGGCCCTTACA 60.251 55.000 4.64 0.00 42.40 2.41
197 198 1.820090 CGGGACAAAAGGCCCTTACAA 60.820 52.381 4.64 0.00 42.40 2.41
198 199 2.321719 GGGACAAAAGGCCCTTACAAA 58.678 47.619 0.00 0.00 41.31 2.83
199 200 2.036733 GGGACAAAAGGCCCTTACAAAC 59.963 50.000 0.00 0.00 41.31 2.93
200 201 2.036733 GGACAAAAGGCCCTTACAAACC 59.963 50.000 0.00 0.00 0.00 3.27
201 202 1.684450 ACAAAAGGCCCTTACAAACCG 59.316 47.619 0.00 0.00 0.00 4.44
202 203 1.000394 CAAAAGGCCCTTACAAACCGG 60.000 52.381 0.00 0.00 0.00 5.28
203 204 0.541063 AAAGGCCCTTACAAACCGGG 60.541 55.000 6.32 0.00 41.06 5.73
204 205 2.361992 GGCCCTTACAAACCGGGG 60.362 66.667 6.32 0.00 41.64 5.73
205 206 2.437449 GCCCTTACAAACCGGGGT 59.563 61.111 6.32 3.30 40.86 4.95
206 207 1.684629 GCCCTTACAAACCGGGGTA 59.315 57.895 6.32 2.16 40.86 3.69
207 208 0.038021 GCCCTTACAAACCGGGGTAA 59.962 55.000 6.32 10.72 40.86 2.85
208 209 1.547449 GCCCTTACAAACCGGGGTAAA 60.547 52.381 6.32 0.00 40.86 2.01
209 210 2.874014 CCCTTACAAACCGGGGTAAAA 58.126 47.619 6.32 0.00 34.22 1.52
210 211 2.821378 CCCTTACAAACCGGGGTAAAAG 59.179 50.000 6.32 3.70 34.22 2.27
211 212 2.229543 CCTTACAAACCGGGGTAAAAGC 59.770 50.000 6.32 0.00 0.00 3.51
212 213 1.908344 TACAAACCGGGGTAAAAGCC 58.092 50.000 6.32 0.00 34.31 4.35
221 222 2.320681 GGGTAAAAGCCCCTTTTCCT 57.679 50.000 6.25 0.00 41.88 3.36
222 223 3.461378 GGGTAAAAGCCCCTTTTCCTA 57.539 47.619 6.25 0.00 41.88 2.94
223 224 3.094572 GGGTAAAAGCCCCTTTTCCTAC 58.905 50.000 6.25 0.98 41.88 3.18
224 225 3.245514 GGGTAAAAGCCCCTTTTCCTACT 60.246 47.826 6.25 0.00 41.88 2.57
225 226 4.018141 GGGTAAAAGCCCCTTTTCCTACTA 60.018 45.833 6.25 0.00 41.88 1.82
226 227 5.191426 GGTAAAAGCCCCTTTTCCTACTAG 58.809 45.833 6.25 0.00 41.88 2.57
227 228 5.280882 GGTAAAAGCCCCTTTTCCTACTAGT 60.281 44.000 0.00 0.00 41.88 2.57
278 279 0.694444 GAGGCCATGACTTCCCCCTA 60.694 60.000 5.01 0.00 0.00 3.53
307 309 2.225167 TGGTGGGGGTATGACTTTTTCC 60.225 50.000 0.00 0.00 0.00 3.13
308 310 2.225167 GGTGGGGGTATGACTTTTTCCA 60.225 50.000 0.00 0.00 0.00 3.53
310 312 2.100197 GGGGGTATGACTTTTTCCAGC 58.900 52.381 0.00 0.00 0.00 4.85
325 327 0.103937 CCAGCGAGGTCCATCTTCTC 59.896 60.000 0.00 0.00 0.00 2.87
326 328 1.110442 CAGCGAGGTCCATCTTCTCT 58.890 55.000 0.00 0.00 0.00 3.10
327 329 1.110442 AGCGAGGTCCATCTTCTCTG 58.890 55.000 0.00 0.00 0.00 3.35
328 330 0.103937 GCGAGGTCCATCTTCTCTGG 59.896 60.000 0.00 0.00 34.93 3.86
350 352 3.058155 GCGAGCTCGGATGAACTAGAATA 60.058 47.826 35.10 0.00 40.23 1.75
352 354 4.452795 CGAGCTCGGATGAACTAGAATAGA 59.547 45.833 28.40 0.00 37.69 1.98
358 360 7.208225 TCGGATGAACTAGAATAGATGACTG 57.792 40.000 0.00 0.00 42.77 3.51
360 362 6.162777 GGATGAACTAGAATAGATGACTGCC 58.837 44.000 0.00 0.00 42.77 4.85
361 363 5.188327 TGAACTAGAATAGATGACTGCCG 57.812 43.478 0.00 0.00 42.77 5.69
362 364 4.645136 TGAACTAGAATAGATGACTGCCGT 59.355 41.667 0.00 0.00 42.77 5.68
363 365 4.576216 ACTAGAATAGATGACTGCCGTG 57.424 45.455 0.00 0.00 42.77 4.94
364 366 4.207955 ACTAGAATAGATGACTGCCGTGA 58.792 43.478 0.00 0.00 42.77 4.35
365 367 4.645136 ACTAGAATAGATGACTGCCGTGAA 59.355 41.667 0.00 0.00 42.77 3.18
366 368 4.679373 AGAATAGATGACTGCCGTGAAT 57.321 40.909 0.00 0.00 0.00 2.57
367 369 5.791336 AGAATAGATGACTGCCGTGAATA 57.209 39.130 0.00 0.00 0.00 1.75
368 370 6.161855 AGAATAGATGACTGCCGTGAATAA 57.838 37.500 0.00 0.00 0.00 1.40
369 371 6.582636 AGAATAGATGACTGCCGTGAATAAA 58.417 36.000 0.00 0.00 0.00 1.40
370 372 7.220030 AGAATAGATGACTGCCGTGAATAAAT 58.780 34.615 0.00 0.00 0.00 1.40
371 373 7.716998 AGAATAGATGACTGCCGTGAATAAATT 59.283 33.333 0.00 0.00 0.00 1.82
372 374 8.902540 AATAGATGACTGCCGTGAATAAATTA 57.097 30.769 0.00 0.00 0.00 1.40
373 375 9.507329 AATAGATGACTGCCGTGAATAAATTAT 57.493 29.630 0.00 0.00 0.00 1.28
374 376 7.807977 AGATGACTGCCGTGAATAAATTATT 57.192 32.000 0.00 0.00 0.00 1.40
375 377 8.225603 AGATGACTGCCGTGAATAAATTATTT 57.774 30.769 0.00 0.00 0.00 1.40
376 378 8.686334 AGATGACTGCCGTGAATAAATTATTTT 58.314 29.630 0.00 0.00 0.00 1.82
377 379 8.633075 ATGACTGCCGTGAATAAATTATTTTG 57.367 30.769 0.00 0.00 0.00 2.44
378 380 7.032580 TGACTGCCGTGAATAAATTATTTTGG 58.967 34.615 0.00 4.12 0.00 3.28
379 381 6.337356 ACTGCCGTGAATAAATTATTTTGGG 58.663 36.000 0.00 3.33 0.00 4.12
380 382 6.071051 ACTGCCGTGAATAAATTATTTTGGGT 60.071 34.615 0.00 0.00 0.00 4.51
381 383 6.334202 TGCCGTGAATAAATTATTTTGGGTC 58.666 36.000 0.00 0.76 0.00 4.46
382 384 6.153680 TGCCGTGAATAAATTATTTTGGGTCT 59.846 34.615 0.00 0.00 0.00 3.85
383 385 6.475402 GCCGTGAATAAATTATTTTGGGTCTG 59.525 38.462 0.00 0.00 0.00 3.51
384 386 7.543756 CCGTGAATAAATTATTTTGGGTCTGT 58.456 34.615 0.00 0.00 0.00 3.41
385 387 8.679100 CCGTGAATAAATTATTTTGGGTCTGTA 58.321 33.333 0.00 0.00 0.00 2.74
392 394 8.415950 AAATTATTTTGGGTCTGTATGTCACA 57.584 30.769 0.00 0.00 35.30 3.58
393 395 8.593945 AATTATTTTGGGTCTGTATGTCACAT 57.406 30.769 0.00 0.00 36.29 3.21
394 396 7.624360 TTATTTTGGGTCTGTATGTCACATC 57.376 36.000 0.00 0.00 36.29 3.06
395 397 4.908601 TTTGGGTCTGTATGTCACATCT 57.091 40.909 0.00 0.00 36.29 2.90
396 398 6.367374 TTTTGGGTCTGTATGTCACATCTA 57.633 37.500 0.00 0.00 36.29 1.98
397 399 6.367374 TTTGGGTCTGTATGTCACATCTAA 57.633 37.500 0.00 0.00 36.29 2.10
398 400 5.339008 TGGGTCTGTATGTCACATCTAAC 57.661 43.478 0.00 0.00 36.29 2.34
399 401 4.161565 TGGGTCTGTATGTCACATCTAACC 59.838 45.833 0.00 0.00 36.29 2.85
400 402 4.406003 GGGTCTGTATGTCACATCTAACCT 59.594 45.833 0.00 0.00 36.29 3.50
401 403 5.352284 GGTCTGTATGTCACATCTAACCTG 58.648 45.833 0.00 0.00 36.29 4.00
402 404 5.127194 GGTCTGTATGTCACATCTAACCTGA 59.873 44.000 0.00 0.00 36.29 3.86
403 405 6.183360 GGTCTGTATGTCACATCTAACCTGAT 60.183 42.308 0.00 0.00 36.29 2.90
404 406 6.699204 GTCTGTATGTCACATCTAACCTGATG 59.301 42.308 0.00 0.00 46.61 3.07
416 418 8.498054 CATCTAACCTGATGTTCACTATGTTT 57.502 34.615 0.00 0.00 39.05 2.83
417 419 7.905604 TCTAACCTGATGTTCACTATGTTTG 57.094 36.000 0.00 0.00 38.42 2.93
418 420 7.450074 TCTAACCTGATGTTCACTATGTTTGT 58.550 34.615 0.00 0.00 38.42 2.83
419 421 5.947228 ACCTGATGTTCACTATGTTTGTG 57.053 39.130 0.00 0.00 36.82 3.33
420 422 4.761739 ACCTGATGTTCACTATGTTTGTGG 59.238 41.667 0.00 0.00 36.21 4.17
421 423 4.761739 CCTGATGTTCACTATGTTTGTGGT 59.238 41.667 0.00 0.00 36.21 4.16
422 424 5.106555 CCTGATGTTCACTATGTTTGTGGTC 60.107 44.000 0.00 0.00 36.21 4.02
423 425 5.620206 TGATGTTCACTATGTTTGTGGTCT 58.380 37.500 0.00 0.00 36.21 3.85
424 426 6.764379 TGATGTTCACTATGTTTGTGGTCTA 58.236 36.000 0.00 0.00 36.21 2.59
425 427 7.394016 TGATGTTCACTATGTTTGTGGTCTAT 58.606 34.615 0.00 0.00 36.21 1.98
426 428 7.882791 TGATGTTCACTATGTTTGTGGTCTATT 59.117 33.333 0.00 0.00 36.21 1.73
427 429 8.635765 ATGTTCACTATGTTTGTGGTCTATTT 57.364 30.769 0.00 0.00 36.21 1.40
428 430 8.458573 TGTTCACTATGTTTGTGGTCTATTTT 57.541 30.769 0.00 0.00 36.21 1.82
429 431 8.908903 TGTTCACTATGTTTGTGGTCTATTTTT 58.091 29.630 0.00 0.00 36.21 1.94
460 462 2.663826 TTTTTCCTTGTTGCTGCGTT 57.336 40.000 0.00 0.00 0.00 4.84
461 463 3.784701 TTTTTCCTTGTTGCTGCGTTA 57.215 38.095 0.00 0.00 0.00 3.18
462 464 4.314740 TTTTTCCTTGTTGCTGCGTTAT 57.685 36.364 0.00 0.00 0.00 1.89
463 465 4.314740 TTTTCCTTGTTGCTGCGTTATT 57.685 36.364 0.00 0.00 0.00 1.40
464 466 4.314740 TTTCCTTGTTGCTGCGTTATTT 57.685 36.364 0.00 0.00 0.00 1.40
465 467 3.281341 TCCTTGTTGCTGCGTTATTTG 57.719 42.857 0.00 0.00 0.00 2.32
466 468 2.621055 TCCTTGTTGCTGCGTTATTTGT 59.379 40.909 0.00 0.00 0.00 2.83
467 469 2.725723 CCTTGTTGCTGCGTTATTTGTG 59.274 45.455 0.00 0.00 0.00 3.33
468 470 2.414058 TGTTGCTGCGTTATTTGTGG 57.586 45.000 0.00 0.00 0.00 4.17
469 471 1.000827 TGTTGCTGCGTTATTTGTGGG 60.001 47.619 0.00 0.00 0.00 4.61
470 472 1.268352 GTTGCTGCGTTATTTGTGGGA 59.732 47.619 0.00 0.00 0.00 4.37
471 473 1.164411 TGCTGCGTTATTTGTGGGAG 58.836 50.000 0.00 0.00 0.00 4.30
472 474 1.165270 GCTGCGTTATTTGTGGGAGT 58.835 50.000 0.00 0.00 0.00 3.85
473 475 1.539827 GCTGCGTTATTTGTGGGAGTT 59.460 47.619 0.00 0.00 0.00 3.01
474 476 2.030274 GCTGCGTTATTTGTGGGAGTTT 60.030 45.455 0.00 0.00 0.00 2.66
475 477 3.189702 GCTGCGTTATTTGTGGGAGTTTA 59.810 43.478 0.00 0.00 0.00 2.01
476 478 4.671766 GCTGCGTTATTTGTGGGAGTTTAG 60.672 45.833 0.00 0.00 0.00 1.85
477 479 4.643463 TGCGTTATTTGTGGGAGTTTAGA 58.357 39.130 0.00 0.00 0.00 2.10
478 480 4.453136 TGCGTTATTTGTGGGAGTTTAGAC 59.547 41.667 0.00 0.00 0.00 2.59
479 481 4.435121 GCGTTATTTGTGGGAGTTTAGACG 60.435 45.833 0.00 0.00 0.00 4.18
480 482 4.687483 CGTTATTTGTGGGAGTTTAGACGT 59.313 41.667 0.00 0.00 0.00 4.34
481 483 5.389098 CGTTATTTGTGGGAGTTTAGACGTG 60.389 44.000 0.00 0.00 0.00 4.49
482 484 3.823281 TTTGTGGGAGTTTAGACGTGA 57.177 42.857 0.00 0.00 0.00 4.35
483 485 2.806608 TGTGGGAGTTTAGACGTGAC 57.193 50.000 0.00 0.00 0.00 3.67
484 486 2.033372 TGTGGGAGTTTAGACGTGACA 58.967 47.619 0.00 0.00 0.00 3.58
485 487 2.631062 TGTGGGAGTTTAGACGTGACAT 59.369 45.455 0.00 0.00 0.00 3.06
486 488 3.251571 GTGGGAGTTTAGACGTGACATC 58.748 50.000 0.00 0.00 0.00 3.06
487 489 2.232941 TGGGAGTTTAGACGTGACATCC 59.767 50.000 0.00 0.00 0.00 3.51
488 490 2.496470 GGGAGTTTAGACGTGACATCCT 59.504 50.000 0.00 0.00 0.00 3.24
489 491 3.056035 GGGAGTTTAGACGTGACATCCTT 60.056 47.826 0.00 0.00 0.00 3.36
490 492 4.159135 GGGAGTTTAGACGTGACATCCTTA 59.841 45.833 0.00 0.00 0.00 2.69
491 493 5.337009 GGGAGTTTAGACGTGACATCCTTAA 60.337 44.000 0.00 0.00 0.00 1.85
492 494 6.161381 GGAGTTTAGACGTGACATCCTTAAA 58.839 40.000 0.00 0.00 0.00 1.52
493 495 6.647895 GGAGTTTAGACGTGACATCCTTAAAA 59.352 38.462 0.00 0.00 0.00 1.52
494 496 7.172019 GGAGTTTAGACGTGACATCCTTAAAAA 59.828 37.037 0.00 0.00 0.00 1.94
495 497 7.858583 AGTTTAGACGTGACATCCTTAAAAAC 58.141 34.615 0.00 0.00 0.00 2.43
496 498 7.496591 AGTTTAGACGTGACATCCTTAAAAACA 59.503 33.333 0.00 0.00 0.00 2.83
497 499 7.972832 TTAGACGTGACATCCTTAAAAACAT 57.027 32.000 0.00 0.00 0.00 2.71
498 500 6.481954 AGACGTGACATCCTTAAAAACATC 57.518 37.500 0.00 0.00 0.00 3.06
499 501 6.231211 AGACGTGACATCCTTAAAAACATCT 58.769 36.000 0.00 0.00 0.00 2.90
500 502 7.383687 AGACGTGACATCCTTAAAAACATCTA 58.616 34.615 0.00 0.00 0.00 1.98
501 503 7.545965 AGACGTGACATCCTTAAAAACATCTAG 59.454 37.037 0.00 0.00 0.00 2.43
502 504 7.383687 ACGTGACATCCTTAAAAACATCTAGA 58.616 34.615 0.00 0.00 0.00 2.43
503 505 8.041323 ACGTGACATCCTTAAAAACATCTAGAT 58.959 33.333 0.00 0.00 0.00 1.98
504 506 9.529325 CGTGACATCCTTAAAAACATCTAGATA 57.471 33.333 4.54 0.00 0.00 1.98
537 539 8.601845 AACAAACTATAAATTTTTCAGGCACC 57.398 30.769 0.00 0.00 0.00 5.01
555 557 9.541884 TCAGGCACCTGATATATAGTTACATAA 57.458 33.333 15.46 0.00 46.80 1.90
603 624 1.830477 GGATTAAACCCCAAGCATGCA 59.170 47.619 21.98 0.00 0.00 3.96
604 625 2.418609 GGATTAAACCCCAAGCATGCAC 60.419 50.000 21.98 0.00 0.00 4.57
605 626 0.600557 TTAAACCCCAAGCATGCACG 59.399 50.000 21.98 10.05 0.00 5.34
606 627 1.872197 TAAACCCCAAGCATGCACGC 61.872 55.000 21.98 0.00 0.00 5.34
627 648 4.318333 CGCATGCATGTAGTGACAAGATAC 60.318 45.833 26.79 4.98 39.59 2.24
645 671 8.939929 ACAAGATACATAAATGCATCGATAAGG 58.060 33.333 0.00 0.00 36.04 2.69
656 682 1.195115 TCGATAAGGCTCTTGCAGGT 58.805 50.000 0.00 0.00 41.91 4.00
671 697 2.367241 TGCAGGTGTGTAGTAGCTTCAA 59.633 45.455 0.00 0.00 0.00 2.69
701 727 4.382362 GCATAGCTCCCAGCAAAAGAAAAT 60.382 41.667 0.00 0.00 45.56 1.82
873 900 0.942410 GCGCTTCTTCACCACGTACA 60.942 55.000 0.00 0.00 0.00 2.90
934 973 6.042777 CACCCGCTATATATACCATCACTTG 58.957 44.000 0.00 0.00 0.00 3.16
1097 1137 3.458163 GTGGGATGCCGAGGACGA 61.458 66.667 0.00 0.00 42.66 4.20
1138 1181 1.302192 CAAGAAGGGGGCGACGAAA 60.302 57.895 0.00 0.00 0.00 3.46
1543 1589 2.749441 GCAGCTTCCAGGTGAGCC 60.749 66.667 7.13 0.00 45.98 4.70
1544 1590 2.752358 CAGCTTCCAGGTGAGCCA 59.248 61.111 12.28 0.00 45.98 4.75
1545 1591 1.302285 CAGCTTCCAGGTGAGCCAT 59.698 57.895 12.28 0.00 45.98 4.40
1546 1592 1.030488 CAGCTTCCAGGTGAGCCATG 61.030 60.000 12.28 4.06 45.98 3.66
1610 1663 5.600908 TGCAACGACTTACTTTTGGTATC 57.399 39.130 0.00 0.00 0.00 2.24
1684 1737 0.728129 CGCAGTCGTTCTTCAGCGTA 60.728 55.000 0.00 0.00 40.25 4.42
1704 1757 0.099968 TTCAGCGACGAGGTTATCCG 59.900 55.000 0.00 0.00 39.05 4.18
1714 1767 1.826487 GGTTATCCGGGCGGCATTT 60.826 57.895 12.47 0.00 34.68 2.32
1749 1802 2.086869 CTGACCATCGGCACTGATTTT 58.913 47.619 0.00 0.00 0.00 1.82
1750 1803 2.489329 CTGACCATCGGCACTGATTTTT 59.511 45.455 0.00 0.00 0.00 1.94
1751 1804 2.228582 TGACCATCGGCACTGATTTTTG 59.771 45.455 0.00 0.00 0.00 2.44
1752 1805 2.228822 GACCATCGGCACTGATTTTTGT 59.771 45.455 0.00 0.00 0.00 2.83
1753 1806 2.627699 ACCATCGGCACTGATTTTTGTT 59.372 40.909 0.00 0.00 0.00 2.83
1754 1807 3.069443 ACCATCGGCACTGATTTTTGTTT 59.931 39.130 0.00 0.00 0.00 2.83
1755 1808 3.429543 CCATCGGCACTGATTTTTGTTTG 59.570 43.478 0.00 0.00 0.00 2.93
1870 1932 1.337071 TGTGGACAGAGTGTTCGAGAC 59.663 52.381 0.00 0.00 0.00 3.36
2120 2182 2.615493 GGATGTCACCCTCGTCAACATT 60.615 50.000 0.00 0.00 29.59 2.71
2193 2255 2.438434 GGGACGGATTGGTGCTGG 60.438 66.667 0.00 0.00 0.00 4.85
2194 2256 2.668632 GGACGGATTGGTGCTGGA 59.331 61.111 0.00 0.00 0.00 3.86
2195 2257 1.745489 GGACGGATTGGTGCTGGAC 60.745 63.158 0.00 0.00 0.00 4.02
2196 2258 1.745489 GACGGATTGGTGCTGGACC 60.745 63.158 11.87 11.87 46.37 4.46
2197 2259 2.185310 GACGGATTGGTGCTGGACCT 62.185 60.000 19.43 0.00 46.32 3.85
2198 2260 0.907704 ACGGATTGGTGCTGGACCTA 60.908 55.000 19.43 12.46 46.32 3.08
2199 2261 0.251916 CGGATTGGTGCTGGACCTAA 59.748 55.000 19.43 11.90 46.32 2.69
2208 2270 0.530870 GCTGGACCTAAGCGCCTAAG 60.531 60.000 2.29 0.00 0.00 2.18
2416 2480 3.680786 CACGGACACGGCAGGAGA 61.681 66.667 0.00 0.00 46.48 3.71
2467 2564 2.757917 AGCGAGGAGGAGGAGCAC 60.758 66.667 0.00 0.00 0.00 4.40
2768 2865 2.126580 CGGAGTCCGTGTTCGTCC 60.127 66.667 23.83 0.00 42.73 4.79
2818 2915 0.101399 ACATGTGAGCGACGATCTCC 59.899 55.000 14.91 5.60 0.00 3.71
2867 2965 3.982576 ATGCATGCATGAGTGTACATG 57.017 42.857 31.74 1.04 46.96 3.21
2868 2966 2.713877 TGCATGCATGAGTGTACATGT 58.286 42.857 30.64 2.69 46.25 3.21
2869 2967 2.420722 TGCATGCATGAGTGTACATGTG 59.579 45.455 30.64 0.23 46.25 3.21
2870 2968 2.679336 GCATGCATGAGTGTACATGTGA 59.321 45.455 30.64 0.00 46.25 3.58
2871 2969 3.242641 GCATGCATGAGTGTACATGTGAG 60.243 47.826 30.64 0.00 46.25 3.51
2905 3007 0.311165 ATAGCTAGCACGGTACTGCG 59.689 55.000 18.83 0.00 42.42 5.18
2942 3050 1.214175 TGTAGCAGAGGAGAGGAGAGG 59.786 57.143 0.00 0.00 0.00 3.69
2943 3051 1.493022 GTAGCAGAGGAGAGGAGAGGA 59.507 57.143 0.00 0.00 0.00 3.71
2946 3054 1.477558 GCAGAGGAGAGGAGAGGAGAG 60.478 61.905 0.00 0.00 0.00 3.20
2947 3055 2.126882 CAGAGGAGAGGAGAGGAGAGA 58.873 57.143 0.00 0.00 0.00 3.10
2949 3057 0.837272 AGGAGAGGAGAGGAGAGACG 59.163 60.000 0.00 0.00 0.00 4.18
2972 3098 1.823260 CTTGTGTTCGTGCGCGGTTA 61.823 55.000 21.04 3.08 38.89 2.85
2973 3099 1.222766 TTGTGTTCGTGCGCGGTTAT 61.223 50.000 21.04 0.00 38.89 1.89
2974 3100 1.225637 GTGTTCGTGCGCGGTTATG 60.226 57.895 21.04 0.00 38.89 1.90
2975 3101 2.276430 GTTCGTGCGCGGTTATGC 60.276 61.111 21.04 0.32 38.89 3.14
2976 3102 2.738904 TTCGTGCGCGGTTATGCA 60.739 55.556 21.04 0.00 39.13 3.96
2977 3103 2.103647 TTCGTGCGCGGTTATGCAT 61.104 52.632 21.04 3.79 43.96 3.96
2978 3104 2.303208 TTCGTGCGCGGTTATGCATG 62.303 55.000 21.04 0.99 46.84 4.06
2979 3105 3.097672 GTGCGCGGTTATGCATGA 58.902 55.556 10.16 0.00 43.96 3.07
3008 3134 3.419915 CATGCACGTGAGTTTTCTATGC 58.580 45.455 22.23 0.00 46.40 3.14
3014 3140 5.725042 GCACGTGAGTTTTCTATGCATGTAG 60.725 44.000 22.23 0.00 46.40 2.74
3116 3245 1.880675 ACTCCTACAGTGACGTGTCAG 59.119 52.381 2.31 0.00 40.75 3.51
3117 3246 1.880675 CTCCTACAGTGACGTGTCAGT 59.119 52.381 2.31 3.50 43.55 3.41
3126 3255 3.282831 TGACGTGTCAGTGTCACATAG 57.717 47.619 18.46 6.79 40.02 2.23
3127 3256 2.882137 TGACGTGTCAGTGTCACATAGA 59.118 45.455 18.46 0.00 40.02 1.98
3128 3257 3.304458 TGACGTGTCAGTGTCACATAGAC 60.304 47.826 18.46 10.40 40.02 2.59
3129 3258 6.334225 TGACGTGTCAGTGTCACATAGACC 62.334 50.000 18.46 9.45 40.02 3.85
3219 3348 1.583967 CGATCGACCTGAGTCACGC 60.584 63.158 10.26 0.00 43.73 5.34
3241 3370 2.177594 CTCTCGCCAGCCACTTTCCT 62.178 60.000 0.00 0.00 0.00 3.36
3269 3405 5.339035 GGAGTCAGGACAGTTACTAGTAGGA 60.339 48.000 2.23 0.00 0.00 2.94
3329 3470 3.716006 GACAGCAAGCAAGCGCGA 61.716 61.111 12.10 0.00 45.49 5.87
3445 3588 2.573869 CCATCGTGCACCTCGACT 59.426 61.111 12.15 0.00 40.07 4.18
3587 3742 1.948635 CGCCCGTGTTTTGCTTTGG 60.949 57.895 0.00 0.00 0.00 3.28
3588 3743 2.243957 GCCCGTGTTTTGCTTTGGC 61.244 57.895 0.00 0.00 39.26 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.532238 GGGACCAATAGGCAGGACC 59.468 63.158 0.00 0.00 39.06 4.46
12 13 1.146263 CGGGACCAATAGGCAGGAC 59.854 63.158 0.00 0.00 39.06 3.85
13 14 2.070039 CCGGGACCAATAGGCAGGA 61.070 63.158 0.00 0.00 39.06 3.86
14 15 1.921869 AACCGGGACCAATAGGCAGG 61.922 60.000 6.32 0.00 39.06 4.85
15 16 0.748005 CAACCGGGACCAATAGGCAG 60.748 60.000 6.32 0.00 39.06 4.85
16 17 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
17 18 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
18 19 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
19 20 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
20 21 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
21 22 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
22 23 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
37 38 4.589675 TTGGTCCCGGTTGGTGCC 62.590 66.667 0.00 0.00 34.77 5.01
38 39 2.519780 TTTGGTCCCGGTTGGTGC 60.520 61.111 0.00 0.00 34.77 5.01
39 40 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
40 41 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
41 42 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
42 43 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
43 44 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
83 84 3.607370 GAAGGTCCTCCACGTGGCC 62.607 68.421 30.25 23.65 35.89 5.36
84 85 2.047179 GAAGGTCCTCCACGTGGC 60.047 66.667 30.25 15.44 35.89 5.01
85 86 1.293498 CAGAAGGTCCTCCACGTGG 59.707 63.158 29.26 29.26 35.89 4.94
86 87 0.038159 GACAGAAGGTCCTCCACGTG 60.038 60.000 9.08 9.08 40.83 4.49
87 88 2.352817 GACAGAAGGTCCTCCACGT 58.647 57.895 0.00 0.00 40.83 4.49
95 96 0.531200 ACGAATCGGGACAGAAGGTC 59.469 55.000 7.80 0.00 46.20 3.85
96 97 0.246635 CACGAATCGGGACAGAAGGT 59.753 55.000 7.80 0.00 28.17 3.50
97 98 0.246635 ACACGAATCGGGACAGAAGG 59.753 55.000 13.47 0.00 32.98 3.46
98 99 2.933495 TACACGAATCGGGACAGAAG 57.067 50.000 13.47 0.00 32.98 2.85
99 100 2.821378 TCTTACACGAATCGGGACAGAA 59.179 45.455 13.47 0.00 32.98 3.02
100 101 2.439409 TCTTACACGAATCGGGACAGA 58.561 47.619 13.47 9.32 32.98 3.41
101 102 2.921754 GTTCTTACACGAATCGGGACAG 59.078 50.000 13.47 6.84 32.98 3.51
102 103 2.353011 GGTTCTTACACGAATCGGGACA 60.353 50.000 13.47 0.00 32.98 4.02
103 104 2.265683 GGTTCTTACACGAATCGGGAC 58.734 52.381 13.47 0.00 32.98 4.46
104 105 1.135315 CGGTTCTTACACGAATCGGGA 60.135 52.381 13.47 0.00 42.24 5.14
105 106 1.274596 CGGTTCTTACACGAATCGGG 58.725 55.000 2.20 2.20 42.24 5.14
107 108 1.135315 TCCCGGTTCTTACACGAATCG 60.135 52.381 0.00 0.00 44.73 3.34
108 109 2.094338 AGTCCCGGTTCTTACACGAATC 60.094 50.000 0.00 0.00 0.00 2.52
109 110 1.897802 AGTCCCGGTTCTTACACGAAT 59.102 47.619 0.00 0.00 0.00 3.34
110 111 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
111 112 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
112 113 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
113 114 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
114 115 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
115 116 2.568956 ACCCTTTAGTCCCGGTTCTTAC 59.431 50.000 0.00 0.00 0.00 2.34
116 117 2.906568 ACCCTTTAGTCCCGGTTCTTA 58.093 47.619 0.00 0.00 0.00 2.10
117 118 1.738474 ACCCTTTAGTCCCGGTTCTT 58.262 50.000 0.00 0.00 0.00 2.52
118 119 1.738474 AACCCTTTAGTCCCGGTTCT 58.262 50.000 0.00 0.15 33.22 3.01
119 120 2.093288 CCTAACCCTTTAGTCCCGGTTC 60.093 54.545 0.00 0.00 39.33 3.62
120 121 1.911357 CCTAACCCTTTAGTCCCGGTT 59.089 52.381 0.00 0.00 41.43 4.44
121 122 1.576577 CCTAACCCTTTAGTCCCGGT 58.423 55.000 0.00 0.00 33.92 5.28
122 123 0.835276 CCCTAACCCTTTAGTCCCGG 59.165 60.000 0.00 0.00 33.92 5.73
123 124 0.179702 GCCCTAACCCTTTAGTCCCG 59.820 60.000 0.00 0.00 33.92 5.14
124 125 1.592948 AGCCCTAACCCTTTAGTCCC 58.407 55.000 0.00 0.00 33.92 4.46
125 126 3.733883 AAAGCCCTAACCCTTTAGTCC 57.266 47.619 0.00 0.00 33.92 3.85
129 130 5.483583 TCGTTACTAAAGCCCTAACCCTTTA 59.516 40.000 0.00 0.00 33.64 1.85
130 131 4.286808 TCGTTACTAAAGCCCTAACCCTTT 59.713 41.667 0.00 0.00 35.60 3.11
131 132 3.840078 TCGTTACTAAAGCCCTAACCCTT 59.160 43.478 0.00 0.00 0.00 3.95
132 133 3.196469 GTCGTTACTAAAGCCCTAACCCT 59.804 47.826 0.00 0.00 0.00 4.34
133 134 3.525537 GTCGTTACTAAAGCCCTAACCC 58.474 50.000 0.00 0.00 0.00 4.11
134 135 3.525537 GGTCGTTACTAAAGCCCTAACC 58.474 50.000 0.00 0.00 0.00 2.85
135 136 3.196469 AGGGTCGTTACTAAAGCCCTAAC 59.804 47.826 12.05 0.00 44.00 2.34
136 137 3.444029 AGGGTCGTTACTAAAGCCCTAA 58.556 45.455 12.05 0.00 44.00 2.69
137 138 3.105959 AGGGTCGTTACTAAAGCCCTA 57.894 47.619 12.05 0.00 44.00 3.53
138 139 1.948391 AGGGTCGTTACTAAAGCCCT 58.052 50.000 9.43 9.43 41.31 5.19
139 140 2.775911 AAGGGTCGTTACTAAAGCCC 57.224 50.000 0.00 0.00 36.46 5.19
140 141 4.825422 ACTAAAGGGTCGTTACTAAAGCC 58.175 43.478 0.00 0.00 0.00 4.35
141 142 4.867047 GGACTAAAGGGTCGTTACTAAAGC 59.133 45.833 0.00 0.00 37.12 3.51
142 143 5.414360 GGGACTAAAGGGTCGTTACTAAAG 58.586 45.833 0.00 0.00 37.12 1.85
143 144 4.082245 CGGGACTAAAGGGTCGTTACTAAA 60.082 45.833 0.00 0.00 37.12 1.85
144 145 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
145 146 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
146 147 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
147 148 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
148 149 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
149 150 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
150 151 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
151 152 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
152 153 0.108472 CGAACCGGGACTAAAGGGTC 60.108 60.000 6.32 0.00 38.35 4.46
153 154 0.542702 TCGAACCGGGACTAAAGGGT 60.543 55.000 6.32 0.00 0.00 4.34
154 155 0.609662 TTCGAACCGGGACTAAAGGG 59.390 55.000 6.32 0.00 0.00 3.95
155 156 2.460757 TTTCGAACCGGGACTAAAGG 57.539 50.000 6.32 0.00 0.00 3.11
156 157 2.481568 GGTTTTCGAACCGGGACTAAAG 59.518 50.000 6.32 0.00 32.47 1.85
157 158 2.493035 GGTTTTCGAACCGGGACTAAA 58.507 47.619 6.32 0.93 32.47 1.85
158 159 2.168326 GGTTTTCGAACCGGGACTAA 57.832 50.000 6.32 0.00 32.47 2.24
159 160 3.912899 GGTTTTCGAACCGGGACTA 57.087 52.632 6.32 0.00 32.47 2.59
160 161 4.785767 GGTTTTCGAACCGGGACT 57.214 55.556 6.32 0.00 32.47 3.85
166 167 1.023502 TTTGTCCCGGTTTTCGAACC 58.976 50.000 0.00 0.00 42.43 3.62
167 168 2.542205 CCTTTTGTCCCGGTTTTCGAAC 60.542 50.000 0.00 0.00 42.43 3.95
168 169 1.677052 CCTTTTGTCCCGGTTTTCGAA 59.323 47.619 0.00 0.00 42.43 3.71
169 170 1.310904 CCTTTTGTCCCGGTTTTCGA 58.689 50.000 0.00 0.00 42.43 3.71
170 171 0.318360 GCCTTTTGTCCCGGTTTTCG 60.318 55.000 0.00 0.00 38.88 3.46
171 172 0.032952 GGCCTTTTGTCCCGGTTTTC 59.967 55.000 0.00 0.00 0.00 2.29
172 173 1.404479 GGGCCTTTTGTCCCGGTTTT 61.404 55.000 0.84 0.00 32.00 2.43
173 174 1.835267 GGGCCTTTTGTCCCGGTTT 60.835 57.895 0.84 0.00 32.00 3.27
174 175 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
178 179 2.003937 TTGTAAGGGCCTTTTGTCCC 57.996 50.000 26.29 6.47 42.94 4.46
179 180 2.036733 GGTTTGTAAGGGCCTTTTGTCC 59.963 50.000 26.29 16.19 0.00 4.02
180 181 2.287970 CGGTTTGTAAGGGCCTTTTGTC 60.288 50.000 26.29 12.96 0.00 3.18
181 182 1.684450 CGGTTTGTAAGGGCCTTTTGT 59.316 47.619 26.29 1.50 0.00 2.83
182 183 1.000394 CCGGTTTGTAAGGGCCTTTTG 60.000 52.381 26.29 6.59 0.00 2.44
183 184 1.334160 CCGGTTTGTAAGGGCCTTTT 58.666 50.000 26.29 2.86 0.00 2.27
184 185 0.541063 CCCGGTTTGTAAGGGCCTTT 60.541 55.000 26.29 5.08 38.51 3.11
185 186 1.076014 CCCGGTTTGTAAGGGCCTT 59.924 57.895 24.44 24.44 38.51 4.35
186 187 2.761160 CCCGGTTTGTAAGGGCCT 59.239 61.111 0.00 0.00 38.51 5.19
187 188 1.851065 TACCCCGGTTTGTAAGGGCC 61.851 60.000 0.00 0.00 43.96 5.80
188 189 0.038021 TTACCCCGGTTTGTAAGGGC 59.962 55.000 0.00 0.00 43.96 5.19
189 190 2.583024 TTTACCCCGGTTTGTAAGGG 57.417 50.000 0.00 0.00 45.75 3.95
190 191 2.229543 GCTTTTACCCCGGTTTGTAAGG 59.770 50.000 0.00 0.00 0.00 2.69
191 192 2.229543 GGCTTTTACCCCGGTTTGTAAG 59.770 50.000 0.00 0.00 0.00 2.34
192 193 2.237643 GGCTTTTACCCCGGTTTGTAA 58.762 47.619 0.00 2.39 0.00 2.41
193 194 1.547449 GGGCTTTTACCCCGGTTTGTA 60.547 52.381 0.00 0.00 45.00 2.41
194 195 0.828762 GGGCTTTTACCCCGGTTTGT 60.829 55.000 0.00 0.00 45.00 2.83
195 196 1.969085 GGGCTTTTACCCCGGTTTG 59.031 57.895 0.00 0.00 45.00 2.93
196 197 4.525467 GGGCTTTTACCCCGGTTT 57.475 55.556 0.00 0.00 45.00 3.27
202 203 2.320681 AGGAAAAGGGGCTTTTACCC 57.679 50.000 0.00 0.00 43.22 3.69
203 204 4.043608 AGTAGGAAAAGGGGCTTTTACC 57.956 45.455 0.00 0.00 43.22 2.85
204 205 5.646793 CACTAGTAGGAAAAGGGGCTTTTAC 59.353 44.000 1.45 0.00 42.72 2.01
205 206 5.548836 TCACTAGTAGGAAAAGGGGCTTTTA 59.451 40.000 1.45 0.00 42.72 1.52
206 207 4.352893 TCACTAGTAGGAAAAGGGGCTTTT 59.647 41.667 1.45 0.00 44.92 2.27
207 208 3.914435 TCACTAGTAGGAAAAGGGGCTTT 59.086 43.478 1.45 0.00 34.94 3.51
208 209 3.527937 TCACTAGTAGGAAAAGGGGCTT 58.472 45.455 1.45 0.00 0.00 4.35
209 210 3.200958 TCACTAGTAGGAAAAGGGGCT 57.799 47.619 1.45 0.00 0.00 5.19
210 211 4.900054 TCTATCACTAGTAGGAAAAGGGGC 59.100 45.833 1.45 0.00 0.00 5.80
211 212 8.722622 TTATCTATCACTAGTAGGAAAAGGGG 57.277 38.462 1.45 0.00 0.00 4.79
215 216 9.101325 CCCCATTATCTATCACTAGTAGGAAAA 57.899 37.037 1.45 0.00 0.00 2.29
216 217 8.239478 ACCCCATTATCTATCACTAGTAGGAAA 58.761 37.037 1.45 0.00 0.00 3.13
217 218 7.776745 ACCCCATTATCTATCACTAGTAGGAA 58.223 38.462 1.45 0.00 0.00 3.36
218 219 7.358255 ACCCCATTATCTATCACTAGTAGGA 57.642 40.000 1.45 0.00 0.00 2.94
219 220 6.319152 CGACCCCATTATCTATCACTAGTAGG 59.681 46.154 1.45 0.00 0.00 3.18
220 221 6.885376 ACGACCCCATTATCTATCACTAGTAG 59.115 42.308 0.00 0.00 0.00 2.57
221 222 6.657966 CACGACCCCATTATCTATCACTAGTA 59.342 42.308 0.00 0.00 0.00 1.82
222 223 5.477291 CACGACCCCATTATCTATCACTAGT 59.523 44.000 0.00 0.00 0.00 2.57
223 224 5.710567 TCACGACCCCATTATCTATCACTAG 59.289 44.000 0.00 0.00 0.00 2.57
224 225 5.475909 GTCACGACCCCATTATCTATCACTA 59.524 44.000 0.00 0.00 0.00 2.74
225 226 4.281182 GTCACGACCCCATTATCTATCACT 59.719 45.833 0.00 0.00 0.00 3.41
226 227 4.281182 AGTCACGACCCCATTATCTATCAC 59.719 45.833 0.00 0.00 0.00 3.06
227 228 4.480115 AGTCACGACCCCATTATCTATCA 58.520 43.478 0.00 0.00 0.00 2.15
278 279 3.910627 GTCATACCCCCACCATCTATCTT 59.089 47.826 0.00 0.00 0.00 2.40
307 309 1.110442 AGAGAAGATGGACCTCGCTG 58.890 55.000 0.00 0.00 32.52 5.18
308 310 1.110442 CAGAGAAGATGGACCTCGCT 58.890 55.000 0.00 0.00 32.52 4.93
310 312 0.103937 GCCAGAGAAGATGGACCTCG 59.896 60.000 0.00 0.00 40.51 4.63
325 327 1.880340 GTTCATCCGAGCTCGCCAG 60.880 63.158 30.49 20.07 38.18 4.85
326 328 1.035385 TAGTTCATCCGAGCTCGCCA 61.035 55.000 30.49 18.86 34.18 5.69
327 329 0.318275 CTAGTTCATCCGAGCTCGCC 60.318 60.000 30.49 12.40 34.18 5.54
328 330 0.663688 TCTAGTTCATCCGAGCTCGC 59.336 55.000 30.49 15.44 34.18 5.03
350 352 7.807977 AATAATTTATTCACGGCAGTCATCT 57.192 32.000 0.00 0.00 0.00 2.90
352 354 7.706179 CCAAAATAATTTATTCACGGCAGTCAT 59.294 33.333 2.22 0.00 0.00 3.06
358 360 6.475402 CAGACCCAAAATAATTTATTCACGGC 59.525 38.462 2.22 0.00 0.00 5.68
366 368 9.521841 TGTGACATACAGACCCAAAATAATTTA 57.478 29.630 0.00 0.00 33.42 1.40
367 369 8.415950 TGTGACATACAGACCCAAAATAATTT 57.584 30.769 0.00 0.00 33.42 1.82
368 370 8.593945 ATGTGACATACAGACCCAAAATAATT 57.406 30.769 0.00 0.00 43.80 1.40
369 371 8.055181 AGATGTGACATACAGACCCAAAATAAT 58.945 33.333 0.00 0.00 43.80 1.28
370 372 7.402054 AGATGTGACATACAGACCCAAAATAA 58.598 34.615 0.00 0.00 43.80 1.40
371 373 6.957631 AGATGTGACATACAGACCCAAAATA 58.042 36.000 0.00 0.00 43.80 1.40
372 374 5.819991 AGATGTGACATACAGACCCAAAAT 58.180 37.500 0.00 0.00 43.80 1.82
373 375 5.241403 AGATGTGACATACAGACCCAAAA 57.759 39.130 0.00 0.00 43.80 2.44
374 376 4.908601 AGATGTGACATACAGACCCAAA 57.091 40.909 0.00 0.00 43.80 3.28
375 377 5.338056 GGTTAGATGTGACATACAGACCCAA 60.338 44.000 0.00 0.00 43.80 4.12
376 378 4.161565 GGTTAGATGTGACATACAGACCCA 59.838 45.833 0.00 0.00 43.80 4.51
377 379 4.406003 AGGTTAGATGTGACATACAGACCC 59.594 45.833 0.00 0.00 43.80 4.46
378 380 5.127194 TCAGGTTAGATGTGACATACAGACC 59.873 44.000 0.00 5.03 43.80 3.85
379 381 6.208988 TCAGGTTAGATGTGACATACAGAC 57.791 41.667 0.00 0.00 43.80 3.51
380 382 6.809869 CATCAGGTTAGATGTGACATACAGA 58.190 40.000 0.00 0.00 43.80 3.41
392 394 8.103305 ACAAACATAGTGAACATCAGGTTAGAT 58.897 33.333 0.00 0.00 40.63 1.98
393 395 7.387673 CACAAACATAGTGAACATCAGGTTAGA 59.612 37.037 0.00 0.00 40.63 2.10
394 396 7.361201 CCACAAACATAGTGAACATCAGGTTAG 60.361 40.741 0.00 0.00 40.63 2.34
395 397 6.429692 CCACAAACATAGTGAACATCAGGTTA 59.570 38.462 0.00 0.00 40.63 2.85
396 398 5.241506 CCACAAACATAGTGAACATCAGGTT 59.758 40.000 0.00 0.00 44.10 3.50
397 399 4.761739 CCACAAACATAGTGAACATCAGGT 59.238 41.667 0.00 0.00 39.30 4.00
398 400 4.761739 ACCACAAACATAGTGAACATCAGG 59.238 41.667 0.00 0.00 39.30 3.86
399 401 5.702670 AGACCACAAACATAGTGAACATCAG 59.297 40.000 0.00 0.00 39.30 2.90
400 402 5.620206 AGACCACAAACATAGTGAACATCA 58.380 37.500 0.00 0.00 39.30 3.07
401 403 7.849804 ATAGACCACAAACATAGTGAACATC 57.150 36.000 0.00 0.00 39.30 3.06
402 404 8.635765 AAATAGACCACAAACATAGTGAACAT 57.364 30.769 0.00 0.00 39.30 2.71
403 405 8.458573 AAAATAGACCACAAACATAGTGAACA 57.541 30.769 0.00 0.00 39.30 3.18
441 443 2.663826 AACGCAGCAACAAGGAAAAA 57.336 40.000 0.00 0.00 0.00 1.94
442 444 4.314740 AATAACGCAGCAACAAGGAAAA 57.685 36.364 0.00 0.00 0.00 2.29
443 445 4.047822 CAAATAACGCAGCAACAAGGAAA 58.952 39.130 0.00 0.00 0.00 3.13
444 446 3.067461 ACAAATAACGCAGCAACAAGGAA 59.933 39.130 0.00 0.00 0.00 3.36
445 447 2.621055 ACAAATAACGCAGCAACAAGGA 59.379 40.909 0.00 0.00 0.00 3.36
446 448 2.725723 CACAAATAACGCAGCAACAAGG 59.274 45.455 0.00 0.00 0.00 3.61
447 449 2.725723 CCACAAATAACGCAGCAACAAG 59.274 45.455 0.00 0.00 0.00 3.16
448 450 2.544694 CCCACAAATAACGCAGCAACAA 60.545 45.455 0.00 0.00 0.00 2.83
449 451 1.000827 CCCACAAATAACGCAGCAACA 60.001 47.619 0.00 0.00 0.00 3.33
450 452 1.268352 TCCCACAAATAACGCAGCAAC 59.732 47.619 0.00 0.00 0.00 4.17
451 453 1.539388 CTCCCACAAATAACGCAGCAA 59.461 47.619 0.00 0.00 0.00 3.91
452 454 1.164411 CTCCCACAAATAACGCAGCA 58.836 50.000 0.00 0.00 0.00 4.41
453 455 1.165270 ACTCCCACAAATAACGCAGC 58.835 50.000 0.00 0.00 0.00 5.25
454 456 3.915437 AAACTCCCACAAATAACGCAG 57.085 42.857 0.00 0.00 0.00 5.18
455 457 4.453136 GTCTAAACTCCCACAAATAACGCA 59.547 41.667 0.00 0.00 0.00 5.24
456 458 4.435121 CGTCTAAACTCCCACAAATAACGC 60.435 45.833 0.00 0.00 0.00 4.84
457 459 4.687483 ACGTCTAAACTCCCACAAATAACG 59.313 41.667 0.00 0.00 0.00 3.18
458 460 5.697633 TCACGTCTAAACTCCCACAAATAAC 59.302 40.000 0.00 0.00 0.00 1.89
459 461 5.697633 GTCACGTCTAAACTCCCACAAATAA 59.302 40.000 0.00 0.00 0.00 1.40
460 462 5.221481 TGTCACGTCTAAACTCCCACAAATA 60.221 40.000 0.00 0.00 0.00 1.40
461 463 4.062991 GTCACGTCTAAACTCCCACAAAT 58.937 43.478 0.00 0.00 0.00 2.32
462 464 3.118702 TGTCACGTCTAAACTCCCACAAA 60.119 43.478 0.00 0.00 0.00 2.83
463 465 2.431419 TGTCACGTCTAAACTCCCACAA 59.569 45.455 0.00 0.00 0.00 3.33
464 466 2.033372 TGTCACGTCTAAACTCCCACA 58.967 47.619 0.00 0.00 0.00 4.17
465 467 2.806608 TGTCACGTCTAAACTCCCAC 57.193 50.000 0.00 0.00 0.00 4.61
466 468 2.232941 GGATGTCACGTCTAAACTCCCA 59.767 50.000 0.00 0.00 0.00 4.37
467 469 2.496470 AGGATGTCACGTCTAAACTCCC 59.504 50.000 0.00 0.00 0.00 4.30
468 470 3.870633 AGGATGTCACGTCTAAACTCC 57.129 47.619 0.00 0.00 0.00 3.85
469 471 7.647907 TTTTAAGGATGTCACGTCTAAACTC 57.352 36.000 0.00 0.00 0.00 3.01
470 472 7.496591 TGTTTTTAAGGATGTCACGTCTAAACT 59.503 33.333 0.00 0.00 0.00 2.66
471 473 7.632721 TGTTTTTAAGGATGTCACGTCTAAAC 58.367 34.615 0.00 2.26 0.00 2.01
472 474 7.789273 TGTTTTTAAGGATGTCACGTCTAAA 57.211 32.000 0.00 0.00 0.00 1.85
473 475 7.876068 AGATGTTTTTAAGGATGTCACGTCTAA 59.124 33.333 0.00 0.00 29.27 2.10
474 476 7.383687 AGATGTTTTTAAGGATGTCACGTCTA 58.616 34.615 0.00 0.00 29.27 2.59
475 477 6.231211 AGATGTTTTTAAGGATGTCACGTCT 58.769 36.000 0.00 0.00 0.00 4.18
476 478 6.481954 AGATGTTTTTAAGGATGTCACGTC 57.518 37.500 0.00 0.00 0.00 4.34
477 479 7.383687 TCTAGATGTTTTTAAGGATGTCACGT 58.616 34.615 0.00 0.00 0.00 4.49
478 480 7.827819 TCTAGATGTTTTTAAGGATGTCACG 57.172 36.000 0.00 0.00 0.00 4.35
511 513 9.051679 GGTGCCTGAAAAATTTATAGTTTGTTT 57.948 29.630 0.00 0.00 0.00 2.83
512 514 8.428852 AGGTGCCTGAAAAATTTATAGTTTGTT 58.571 29.630 0.00 0.00 0.00 2.83
513 515 7.872483 CAGGTGCCTGAAAAATTTATAGTTTGT 59.128 33.333 12.66 0.00 46.30 2.83
514 516 8.243289 CAGGTGCCTGAAAAATTTATAGTTTG 57.757 34.615 12.66 0.00 46.30 2.93
548 550 5.804473 CGCATGCATGGTTTTCTTTATGTAA 59.196 36.000 27.34 0.00 0.00 2.41
549 551 5.339177 CGCATGCATGGTTTTCTTTATGTA 58.661 37.500 27.34 0.00 0.00 2.29
551 553 3.552699 CCGCATGCATGGTTTTCTTTATG 59.447 43.478 27.34 0.00 0.00 1.90
553 555 2.094286 CCCGCATGCATGGTTTTCTTTA 60.094 45.455 27.34 0.00 0.00 1.85
554 556 1.338011 CCCGCATGCATGGTTTTCTTT 60.338 47.619 27.34 0.00 0.00 2.52
555 557 0.247185 CCCGCATGCATGGTTTTCTT 59.753 50.000 27.34 0.00 0.00 2.52
556 558 0.899717 ACCCGCATGCATGGTTTTCT 60.900 50.000 27.34 1.00 0.00 2.52
557 559 0.037419 AACCCGCATGCATGGTTTTC 60.037 50.000 27.45 9.80 39.28 2.29
560 562 0.971959 ATCAACCCGCATGCATGGTT 60.972 50.000 27.45 27.45 42.98 3.67
561 563 1.380246 ATCAACCCGCATGCATGGT 60.380 52.632 27.34 20.25 0.00 3.55
603 624 1.733912 CTTGTCACTACATGCATGCGT 59.266 47.619 26.53 19.85 34.97 5.24
604 625 2.001872 TCTTGTCACTACATGCATGCG 58.998 47.619 26.53 19.20 34.97 4.73
605 626 4.571984 TGTATCTTGTCACTACATGCATGC 59.428 41.667 26.53 11.82 34.97 4.06
606 627 6.856135 ATGTATCTTGTCACTACATGCATG 57.144 37.500 25.09 25.09 35.37 4.06
627 648 6.312487 CAAGAGCCTTATCGATGCATTTATG 58.688 40.000 8.54 0.00 0.00 1.90
645 671 2.611518 CTACTACACACCTGCAAGAGC 58.388 52.381 0.00 0.00 42.57 4.09
656 682 4.799586 GCTCCAAGTTGAAGCTACTACACA 60.800 45.833 6.87 0.00 0.00 3.72
701 727 0.884514 TTTGCATCGGCGGAATGAAA 59.115 45.000 7.21 1.96 45.35 2.69
873 900 1.911766 CAGGTGTAGGTCGGGGTGT 60.912 63.158 0.00 0.00 0.00 4.16
915 954 5.050490 CGGGCAAGTGATGGTATATATAGC 58.950 45.833 13.87 13.87 0.00 2.97
934 973 1.686325 TTGGTGATCTAGCTCCGGGC 61.686 60.000 0.00 3.80 42.19 6.13
1097 1137 2.246849 CACCTCCTACTACCCCTACCTT 59.753 54.545 0.00 0.00 0.00 3.50
1151 1194 4.710167 GGTACGGCCGGCCACTTT 62.710 66.667 42.78 26.09 35.37 2.66
1543 1589 3.911698 ATGCTGCGGCCATGCATG 61.912 61.111 20.19 20.19 45.26 4.06
1544 1590 3.911698 CATGCTGCGGCCATGCAT 61.912 61.111 16.57 17.85 46.74 3.96
1610 1663 6.157211 ACTCCTACAAACGTATCAAGAACAG 58.843 40.000 0.00 0.00 0.00 3.16
1622 1675 1.900486 AGGGGAGAACTCCTACAAACG 59.100 52.381 18.54 0.00 46.61 3.60
1672 1725 2.028165 GTCGCTGAATACGCTGAAGAAC 59.972 50.000 0.00 0.00 0.00 3.01
1684 1737 1.269102 CGGATAACCTCGTCGCTGAAT 60.269 52.381 0.00 0.00 0.00 2.57
1704 1757 1.349282 CGTACGTTAAATGCCGCCC 59.651 57.895 7.22 0.00 0.00 6.13
1749 1802 4.926238 AGCGATGAACAAACAAACAAACAA 59.074 33.333 0.00 0.00 0.00 2.83
1750 1803 4.489810 AGCGATGAACAAACAAACAAACA 58.510 34.783 0.00 0.00 0.00 2.83
1751 1804 5.061560 TCAAGCGATGAACAAACAAACAAAC 59.938 36.000 0.00 0.00 34.30 2.93
1752 1805 5.164233 TCAAGCGATGAACAAACAAACAAA 58.836 33.333 0.00 0.00 34.30 2.83
1753 1806 4.738124 TCAAGCGATGAACAAACAAACAA 58.262 34.783 0.00 0.00 34.30 2.83
1754 1807 4.362932 TCAAGCGATGAACAAACAAACA 57.637 36.364 0.00 0.00 34.30 2.83
1755 1808 5.458452 TGAATCAAGCGATGAACAAACAAAC 59.542 36.000 0.00 0.00 42.54 2.93
1870 1932 1.254284 ACCCTCACCTCTGCTCTTCG 61.254 60.000 0.00 0.00 0.00 3.79
2120 2182 1.824658 CGGATGCTTTACCCGGGTA 59.175 57.895 30.02 30.02 39.59 3.69
2145 2207 9.049523 CATGATGCTACAAAACTATCTGTATGT 57.950 33.333 0.00 0.00 34.57 2.29
2178 2240 1.745489 GGTCCAGCACCAATCCGTC 60.745 63.158 0.00 0.00 45.98 4.79
2179 2241 2.351276 GGTCCAGCACCAATCCGT 59.649 61.111 0.00 0.00 45.98 4.69
2187 2249 1.956629 TAGGCGCTTAGGTCCAGCAC 61.957 60.000 7.64 0.00 37.07 4.40
2188 2250 1.261938 TTAGGCGCTTAGGTCCAGCA 61.262 55.000 7.64 0.00 37.07 4.41
2189 2251 0.530870 CTTAGGCGCTTAGGTCCAGC 60.531 60.000 7.64 0.00 0.00 4.85
2190 2252 0.530870 GCTTAGGCGCTTAGGTCCAG 60.531 60.000 7.64 0.00 0.00 3.86
2191 2253 1.520666 GCTTAGGCGCTTAGGTCCA 59.479 57.895 7.64 0.00 0.00 4.02
2192 2254 1.227586 GGCTTAGGCGCTTAGGTCC 60.228 63.158 7.64 6.86 39.81 4.46
2193 2255 0.107848 TTGGCTTAGGCGCTTAGGTC 60.108 55.000 7.64 6.88 39.81 3.85
2194 2256 0.546598 ATTGGCTTAGGCGCTTAGGT 59.453 50.000 7.64 0.00 39.81 3.08
2195 2257 0.947244 CATTGGCTTAGGCGCTTAGG 59.053 55.000 7.64 5.68 39.81 2.69
2196 2258 1.331756 CACATTGGCTTAGGCGCTTAG 59.668 52.381 7.64 3.30 39.81 2.18
2197 2259 1.339631 ACACATTGGCTTAGGCGCTTA 60.340 47.619 7.64 0.00 39.81 3.09
2198 2260 0.609131 ACACATTGGCTTAGGCGCTT 60.609 50.000 7.64 0.52 39.81 4.68
2199 2261 1.002134 ACACATTGGCTTAGGCGCT 60.002 52.632 7.64 0.00 39.81 5.92
2208 2270 1.753956 GACGAAACACACACATTGGC 58.246 50.000 0.00 0.00 0.00 4.52
2398 2462 3.991051 CTCCTGCCGTGTCCGTGT 61.991 66.667 0.00 0.00 0.00 4.49
2477 2574 0.873743 CTCGATTTCTCCTGCTCGCC 60.874 60.000 0.00 0.00 0.00 5.54
2479 2576 0.249238 CCCTCGATTTCTCCTGCTCG 60.249 60.000 0.00 0.00 0.00 5.03
2835 2933 2.123854 ATGCATGCAGCTCCAGGG 60.124 61.111 26.69 0.00 45.94 4.45
2855 2953 4.560128 GTCACACTCACATGTACACTCAT 58.440 43.478 0.00 0.00 0.00 2.90
2858 2956 2.288213 CCGTCACACTCACATGTACACT 60.288 50.000 0.00 0.00 0.00 3.55
2859 2957 2.058798 CCGTCACACTCACATGTACAC 58.941 52.381 0.00 0.00 0.00 2.90
2860 2958 1.000394 CCCGTCACACTCACATGTACA 60.000 52.381 0.00 0.00 0.00 2.90
2861 2959 1.271379 TCCCGTCACACTCACATGTAC 59.729 52.381 0.00 0.00 0.00 2.90
2862 2960 1.623163 TCCCGTCACACTCACATGTA 58.377 50.000 0.00 0.00 0.00 2.29
2863 2961 0.756294 TTCCCGTCACACTCACATGT 59.244 50.000 0.00 0.00 0.00 3.21
2864 2962 2.099141 ATTCCCGTCACACTCACATG 57.901 50.000 0.00 0.00 0.00 3.21
2865 2963 3.973206 TTATTCCCGTCACACTCACAT 57.027 42.857 0.00 0.00 0.00 3.21
2866 2964 3.755112 TTTATTCCCGTCACACTCACA 57.245 42.857 0.00 0.00 0.00 3.58
2867 2965 4.270325 GCTATTTATTCCCGTCACACTCAC 59.730 45.833 0.00 0.00 0.00 3.51
2868 2966 4.161565 AGCTATTTATTCCCGTCACACTCA 59.838 41.667 0.00 0.00 0.00 3.41
2869 2967 4.694339 AGCTATTTATTCCCGTCACACTC 58.306 43.478 0.00 0.00 0.00 3.51
2870 2968 4.755266 AGCTATTTATTCCCGTCACACT 57.245 40.909 0.00 0.00 0.00 3.55
2871 2969 4.448060 GCTAGCTATTTATTCCCGTCACAC 59.552 45.833 7.70 0.00 0.00 3.82
2905 3007 2.601481 ACACGCACGTACTGTAGTAC 57.399 50.000 11.28 11.28 45.47 2.73
2942 3050 1.651138 CGAACACAAGCATCGTCTCTC 59.349 52.381 0.00 0.00 0.00 3.20
2943 3051 1.000163 ACGAACACAAGCATCGTCTCT 60.000 47.619 0.00 0.00 45.84 3.10
2946 3054 0.451135 GCACGAACACAAGCATCGTC 60.451 55.000 0.00 0.00 45.84 4.20
2949 3057 1.793613 GCGCACGAACACAAGCATC 60.794 57.895 0.30 0.00 0.00 3.91
3008 3134 5.510674 CGGAAAACTCACGTACTACTACATG 59.489 44.000 0.00 0.00 0.00 3.21
3014 3140 3.288809 ACCGGAAAACTCACGTACTAC 57.711 47.619 9.46 0.00 0.00 2.73
3118 3247 2.840673 CGATCGATCGGTCTATGTGAC 58.159 52.381 34.54 0.96 45.93 3.67
3130 3259 6.089016 TGTTTTTGTCTGTTACTCGATCGATC 59.911 38.462 19.78 15.68 0.00 3.69
3131 3260 5.924254 TGTTTTTGTCTGTTACTCGATCGAT 59.076 36.000 19.78 11.36 0.00 3.59
3219 3348 2.177594 AAAGTGGCTGGCGAGAGGAG 62.178 60.000 0.00 0.00 0.00 3.69
3241 3370 0.541063 TAACTGTCCTGACTCCGGCA 60.541 55.000 0.00 0.00 0.00 5.69
3352 3493 2.215604 CGAAGTCGTCGTCCATCGC 61.216 63.158 0.00 0.00 45.09 4.58
3353 3494 3.963841 CGAAGTCGTCGTCCATCG 58.036 61.111 0.00 0.00 45.09 3.84
3399 3542 3.810896 GCCACCACCGCGAATTCC 61.811 66.667 8.23 0.00 0.00 3.01
3477 3620 3.976758 GGTGGTTACCGGTTCTGC 58.023 61.111 15.04 0.00 37.19 4.26
3587 3742 2.505557 GAACCTTGCGCTGCATGC 60.506 61.111 11.82 11.82 38.76 4.06
3588 3743 2.202388 CGAACCTTGCGCTGCATG 60.202 61.111 9.73 6.73 38.76 4.06
3625 3780 4.410400 CCGGTCAGCCCCTTCCAC 62.410 72.222 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.