Multiple sequence alignment - TraesCS5D01G439900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G439900 chr5D 100.000 7562 0 0 1 7562 493373505 493381066 0.000000e+00 13965.0
1 TraesCS5D01G439900 chr5D 89.362 470 44 5 3703 4171 123805243 123804779 3.040000e-163 586.0
2 TraesCS5D01G439900 chr5D 85.362 567 68 10 2963 3525 123805793 123805238 2.370000e-159 573.0
3 TraesCS5D01G439900 chr5D 84.132 334 45 6 1811 2143 123806862 123806536 4.400000e-82 316.0
4 TraesCS5D01G439900 chr5D 88.755 249 12 10 2688 2934 123806018 123805784 2.670000e-74 291.0
5 TraesCS5D01G439900 chr5D 85.827 127 9 5 4162 4280 123804687 123804562 7.970000e-25 126.0
6 TraesCS5D01G439900 chr5B 89.771 3490 212 71 4146 7562 609141849 609145266 0.000000e+00 4333.0
7 TraesCS5D01G439900 chr5B 93.869 1207 58 11 2950 4148 609140565 609141763 0.000000e+00 1805.0
8 TraesCS5D01G439900 chr5B 83.581 1955 130 94 1034 2942 609138778 609140587 0.000000e+00 1655.0
9 TraesCS5D01G439900 chr5B 84.751 905 65 32 164 1041 609133520 609134378 0.000000e+00 839.0
10 TraesCS5D01G439900 chr5B 83.495 103 14 1 1 100 609133441 609133543 8.080000e-15 93.5
11 TraesCS5D01G439900 chr5A 92.949 2255 113 25 4146 6379 616521334 616523563 0.000000e+00 3241.0
12 TraesCS5D01G439900 chr5A 84.967 2887 193 110 170 2938 616517305 616520068 0.000000e+00 2704.0
13 TraesCS5D01G439900 chr5A 93.433 1203 61 13 2957 4148 616520053 616521248 0.000000e+00 1768.0
14 TraesCS5D01G439900 chr5A 87.594 798 57 22 6443 7234 616523590 616524351 0.000000e+00 887.0
15 TraesCS5D01G439900 chr5A 86.813 273 10 13 7275 7537 616524672 616524928 1.610000e-71 281.0
16 TraesCS5D01G439900 chr6B 89.722 467 42 5 3706 4171 4417218 4416757 6.530000e-165 592.0
17 TraesCS5D01G439900 chr6B 88.936 470 45 6 3703 4171 550599364 550599827 2.370000e-159 573.0
18 TraesCS5D01G439900 chr6B 84.156 486 61 11 3044 3525 550598896 550599369 2.490000e-124 457.0
19 TraesCS5D01G439900 chr6B 83.402 488 56 17 3044 3525 4417684 4417216 5.420000e-116 429.0
20 TraesCS5D01G439900 chr6B 86.885 122 8 4 4162 4275 4416665 4416544 6.160000e-26 130.0
21 TraesCS5D01G439900 chr6B 86.400 125 9 4 4159 4275 550599916 550600040 6.160000e-26 130.0
22 TraesCS5D01G439900 chr2A 89.362 470 44 5 3703 4171 423190845 423191309 3.040000e-163 586.0
23 TraesCS5D01G439900 chr2A 83.197 488 57 17 3044 3525 423190382 423190850 2.520000e-114 424.0
24 TraesCS5D01G439900 chr2A 86.139 101 6 4 4183 4275 423191433 423191533 1.340000e-17 102.0
25 TraesCS5D01G439900 chr6A 89.079 467 45 5 3706 4171 58177017 58176556 6.580000e-160 575.0
26 TraesCS5D01G439900 chr6A 88.936 470 45 6 3703 4171 397206613 397207076 2.370000e-159 573.0
27 TraesCS5D01G439900 chr6A 84.912 570 65 16 2961 3525 397206065 397206618 2.380000e-154 556.0
28 TraesCS5D01G439900 chr6A 83.721 516 67 14 3015 3525 58177518 58177015 8.880000e-129 472.0
29 TraesCS5D01G439900 chr6A 84.431 334 44 5 1811 2143 397204990 397205316 9.470000e-84 322.0
30 TraesCS5D01G439900 chr6A 86.747 249 18 10 2688 2934 58185402 58185167 5.820000e-66 263.0
31 TraesCS5D01G439900 chr6A 89.796 98 10 0 2030 2127 58194907 58194810 7.970000e-25 126.0
32 TraesCS5D01G439900 chr6A 85.385 130 10 5 4159 4280 397207165 397207293 7.970000e-25 126.0
33 TraesCS5D01G439900 chr4B 82.738 672 83 17 4159 4820 483093162 483092514 1.100000e-157 568.0
34 TraesCS5D01G439900 chrUn 87.854 247 24 5 3926 4171 34744925 34744684 1.240000e-72 285.0
35 TraesCS5D01G439900 chr2B 87.097 124 14 2 3593 3716 202494374 202494495 1.020000e-28 139.0
36 TraesCS5D01G439900 chr4A 85.542 83 11 1 6443 6525 559050396 559050315 1.350000e-12 86.1
37 TraesCS5D01G439900 chr3D 77.941 136 29 1 6440 6575 546611700 546611834 4.860000e-12 84.2
38 TraesCS5D01G439900 chr7D 90.909 44 4 0 6534 6577 31997331 31997374 8.190000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G439900 chr5D 493373505 493381066 7561 False 13965.000000 13965 100.000000 1 7562 1 chr5D.!!$F1 7561
1 TraesCS5D01G439900 chr5D 123804562 123806862 2300 True 378.400000 586 86.687600 1811 4280 5 chr5D.!!$R1 2469
2 TraesCS5D01G439900 chr5B 609138778 609145266 6488 False 2597.666667 4333 89.073667 1034 7562 3 chr5B.!!$F2 6528
3 TraesCS5D01G439900 chr5B 609133441 609134378 937 False 466.250000 839 84.123000 1 1041 2 chr5B.!!$F1 1040
4 TraesCS5D01G439900 chr5A 616517305 616524928 7623 False 1776.200000 3241 89.151200 170 7537 5 chr5A.!!$F1 7367
5 TraesCS5D01G439900 chr6B 550598896 550600040 1144 False 386.666667 573 86.497333 3044 4275 3 chr6B.!!$F1 1231
6 TraesCS5D01G439900 chr6B 4416544 4417684 1140 True 383.666667 592 86.669667 3044 4275 3 chr6B.!!$R1 1231
7 TraesCS5D01G439900 chr2A 423190382 423191533 1151 False 370.666667 586 86.232667 3044 4275 3 chr2A.!!$F1 1231
8 TraesCS5D01G439900 chr6A 58176556 58177518 962 True 523.500000 575 86.400000 3015 4171 2 chr6A.!!$R3 1156
9 TraesCS5D01G439900 chr6A 397204990 397207293 2303 False 394.250000 573 85.916000 1811 4280 4 chr6A.!!$F1 2469
10 TraesCS5D01G439900 chr4B 483092514 483093162 648 True 568.000000 568 82.738000 4159 4820 1 chr4B.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 740 0.034896 GTCCCACCTGTCAATGACGT 59.965 55.0 9.00 0.0 34.95 4.34 F
1365 1479 0.107945 CGCCCTCCTCTCCTTTTCTG 60.108 60.0 0.00 0.0 0.00 3.02 F
1461 1579 0.325765 ACTCTAGCCCCAACTCCCTC 60.326 60.0 0.00 0.0 0.00 4.30 F
1709 1880 0.463833 ATTCGGTCCGAGATTTGGGC 60.464 55.0 14.79 0.0 37.14 5.36 F
3497 3785 0.472734 ACTGGCTCCACTCTTCACCT 60.473 55.0 0.00 0.0 0.00 4.00 F
3554 3842 0.032615 AGCCTCCGAGACCTTCATCT 60.033 55.0 0.00 0.0 0.00 2.90 F
5480 5922 0.036022 AGCTGACCAGTTGCTTCTCC 59.964 55.0 0.00 0.0 32.61 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2349 0.029267 ATCCTTGAGAGGGAGGGCAT 60.029 55.000 0.00 0.00 43.72 4.40 R
3163 3446 0.099968 CCGCTTCAACGACCGATCTA 59.900 55.000 0.00 0.00 34.06 1.98 R
3167 3453 1.011968 CATTCCGCTTCAACGACCGA 61.012 55.000 0.00 0.00 34.06 4.69 R
3526 3814 1.734465 GTCTCGGAGGCTTTGACAATG 59.266 52.381 1.53 0.00 0.00 2.82 R
4965 5395 0.036388 AAACATGTCCGCATCTCCGT 60.036 50.000 0.00 0.00 31.99 4.69 R
5542 5990 1.681327 GTGAGGACCGGTCAGCCTA 60.681 63.158 34.40 13.78 30.70 3.93 R
7411 8181 0.178955 CCATATTGCCATGAGCCCCA 60.179 55.000 0.00 0.00 42.71 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.249447 GCTTGGGCAAAAGCGAAGTT 60.249 50.000 8.19 0.00 42.86 2.66
31 32 2.102252 TGGGCAAAAGCGAAGTTCAAAT 59.898 40.909 3.32 0.00 0.00 2.32
35 36 3.058129 GCAAAAGCGAAGTTCAAATAGCG 59.942 43.478 3.32 0.00 0.00 4.26
36 37 3.471495 AAAGCGAAGTTCAAATAGCGG 57.529 42.857 3.32 0.00 0.00 5.52
37 38 1.369625 AGCGAAGTTCAAATAGCGGG 58.630 50.000 3.32 0.00 0.00 6.13
43 47 0.878416 GTTCAAATAGCGGGTGCACA 59.122 50.000 20.43 0.00 46.23 4.57
72 76 4.677584 GTGCTGATTCTGTAGGAGTAGTG 58.322 47.826 0.00 0.00 0.00 2.74
76 80 4.353777 TGATTCTGTAGGAGTAGTGCCTT 58.646 43.478 0.00 0.00 36.96 4.35
77 81 4.777896 TGATTCTGTAGGAGTAGTGCCTTT 59.222 41.667 0.00 0.00 36.96 3.11
78 82 5.248477 TGATTCTGTAGGAGTAGTGCCTTTT 59.752 40.000 0.00 0.00 36.96 2.27
79 83 5.562298 TTCTGTAGGAGTAGTGCCTTTTT 57.438 39.130 0.00 0.00 36.96 1.94
97 101 1.855513 TTTCGTGTGTAACCCTGTCG 58.144 50.000 0.00 0.00 34.36 4.35
98 102 1.031235 TTCGTGTGTAACCCTGTCGA 58.969 50.000 0.00 0.00 34.36 4.20
99 103 1.250328 TCGTGTGTAACCCTGTCGAT 58.750 50.000 0.00 0.00 34.36 3.59
100 104 1.200716 TCGTGTGTAACCCTGTCGATC 59.799 52.381 0.00 0.00 34.36 3.69
101 105 1.734707 CGTGTGTAACCCTGTCGATCC 60.735 57.143 0.00 0.00 34.36 3.36
102 106 1.274167 GTGTGTAACCCTGTCGATCCA 59.726 52.381 0.00 0.00 34.36 3.41
103 107 2.093658 GTGTGTAACCCTGTCGATCCAT 60.094 50.000 0.00 0.00 34.36 3.41
104 108 2.167693 TGTGTAACCCTGTCGATCCATC 59.832 50.000 0.00 0.00 34.36 3.51
105 109 2.431057 GTGTAACCCTGTCGATCCATCT 59.569 50.000 0.00 0.00 0.00 2.90
106 110 2.430694 TGTAACCCTGTCGATCCATCTG 59.569 50.000 0.00 0.00 0.00 2.90
107 111 1.866015 AACCCTGTCGATCCATCTGA 58.134 50.000 0.00 0.00 0.00 3.27
108 112 1.866015 ACCCTGTCGATCCATCTGAA 58.134 50.000 0.00 0.00 0.00 3.02
109 113 1.759445 ACCCTGTCGATCCATCTGAAG 59.241 52.381 0.00 0.00 0.00 3.02
110 114 1.539929 CCCTGTCGATCCATCTGAAGC 60.540 57.143 0.00 0.00 0.00 3.86
111 115 1.539929 CCTGTCGATCCATCTGAAGCC 60.540 57.143 0.00 0.00 0.00 4.35
112 116 0.465705 TGTCGATCCATCTGAAGCCC 59.534 55.000 0.00 0.00 0.00 5.19
113 117 0.465705 GTCGATCCATCTGAAGCCCA 59.534 55.000 0.00 0.00 0.00 5.36
114 118 0.465705 TCGATCCATCTGAAGCCCAC 59.534 55.000 0.00 0.00 0.00 4.61
115 119 0.467384 CGATCCATCTGAAGCCCACT 59.533 55.000 0.00 0.00 0.00 4.00
116 120 1.809271 CGATCCATCTGAAGCCCACTG 60.809 57.143 0.00 0.00 0.00 3.66
117 121 1.211457 GATCCATCTGAAGCCCACTGT 59.789 52.381 0.00 0.00 0.00 3.55
118 122 0.325933 TCCATCTGAAGCCCACTGTG 59.674 55.000 0.00 0.00 0.00 3.66
119 123 0.037303 CCATCTGAAGCCCACTGTGT 59.963 55.000 7.08 0.00 0.00 3.72
120 124 1.546323 CCATCTGAAGCCCACTGTGTT 60.546 52.381 7.08 0.00 0.00 3.32
121 125 1.538512 CATCTGAAGCCCACTGTGTTG 59.461 52.381 7.08 0.00 0.00 3.33
122 126 0.546122 TCTGAAGCCCACTGTGTTGT 59.454 50.000 7.08 0.00 0.00 3.32
123 127 0.664761 CTGAAGCCCACTGTGTTGTG 59.335 55.000 7.08 0.00 37.66 3.33
124 128 0.254462 TGAAGCCCACTGTGTTGTGA 59.746 50.000 7.08 0.00 40.12 3.58
125 129 0.663153 GAAGCCCACTGTGTTGTGAC 59.337 55.000 7.08 0.00 40.12 3.67
126 130 1.095228 AAGCCCACTGTGTTGTGACG 61.095 55.000 7.08 0.00 40.12 4.35
127 131 1.522806 GCCCACTGTGTTGTGACGA 60.523 57.895 7.08 0.00 40.12 4.20
128 132 1.092921 GCCCACTGTGTTGTGACGAA 61.093 55.000 7.08 0.00 40.12 3.85
129 133 0.937304 CCCACTGTGTTGTGACGAAG 59.063 55.000 7.08 0.00 40.12 3.79
130 134 1.472552 CCCACTGTGTTGTGACGAAGA 60.473 52.381 7.08 0.00 40.12 2.87
131 135 2.483876 CCACTGTGTTGTGACGAAGAT 58.516 47.619 7.08 0.00 40.12 2.40
132 136 3.554129 CCCACTGTGTTGTGACGAAGATA 60.554 47.826 7.08 0.00 40.12 1.98
133 137 4.055360 CCACTGTGTTGTGACGAAGATAA 58.945 43.478 7.08 0.00 40.12 1.75
134 138 4.690748 CCACTGTGTTGTGACGAAGATAAT 59.309 41.667 7.08 0.00 40.12 1.28
135 139 5.179368 CCACTGTGTTGTGACGAAGATAATT 59.821 40.000 7.08 0.00 40.12 1.40
136 140 6.293407 CCACTGTGTTGTGACGAAGATAATTT 60.293 38.462 7.08 0.00 40.12 1.82
137 141 7.132213 CACTGTGTTGTGACGAAGATAATTTT 58.868 34.615 0.00 0.00 40.12 1.82
138 142 7.643764 CACTGTGTTGTGACGAAGATAATTTTT 59.356 33.333 0.00 0.00 40.12 1.94
161 165 4.674281 TTTTTGCGGGTAAAACCAAGAT 57.326 36.364 0.00 0.00 41.02 2.40
162 166 5.786264 TTTTTGCGGGTAAAACCAAGATA 57.214 34.783 0.00 0.00 41.02 1.98
211 215 4.988598 AAGCCCGCTGTGTGACCG 62.989 66.667 0.00 0.00 0.00 4.79
230 234 2.075979 GGTTCCGGCCGAGATATTAC 57.924 55.000 30.73 15.92 0.00 1.89
337 350 2.960819 AGAAGGAGGAAATCAACGACG 58.039 47.619 0.00 0.00 0.00 5.12
340 353 2.173519 AGGAGGAAATCAACGACGGTA 58.826 47.619 0.00 0.00 0.00 4.02
413 426 0.322456 CTGAAAATCCACCCAGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
477 490 0.179000 ACCTATAGCAGTGCCAGTGC 59.821 55.000 16.76 16.76 44.65 4.40
484 528 2.125912 AGTGCCAGTGCGATCGAC 60.126 61.111 21.57 13.97 41.78 4.20
486 530 3.690280 TGCCAGTGCGATCGACCA 61.690 61.111 21.57 5.14 41.78 4.02
590 634 1.221840 GAGGCGCATCCAAGGAAGA 59.778 57.895 11.78 0.00 37.29 2.87
687 734 1.385347 ACCTGGTCCCACCTGTCAA 60.385 57.895 0.00 0.00 39.58 3.18
690 737 0.692476 CTGGTCCCACCTGTCAATGA 59.308 55.000 0.00 0.00 39.58 2.57
693 740 0.034896 GTCCCACCTGTCAATGACGT 59.965 55.000 9.00 0.00 34.95 4.34
709 771 2.888863 GTGCGGAGAGGAGACAGG 59.111 66.667 0.00 0.00 0.00 4.00
953 1020 3.697424 GCATGTCACCAATGCCCA 58.303 55.556 0.00 0.00 35.44 5.36
954 1021 1.216178 GCATGTCACCAATGCCCAC 59.784 57.895 0.00 0.00 35.44 4.61
955 1022 1.507630 CATGTCACCAATGCCCACG 59.492 57.895 0.00 0.00 0.00 4.94
956 1023 2.342650 ATGTCACCAATGCCCACGC 61.343 57.895 0.00 0.00 0.00 5.34
1023 1119 1.850345 TCTTCCTCCTCCTCTCCTCTC 59.150 57.143 0.00 0.00 0.00 3.20
1051 1147 2.438254 CCGTGCATGCCTGGCTAA 60.438 61.111 21.03 0.00 0.00 3.09
1053 1149 1.357690 CGTGCATGCCTGGCTAATG 59.642 57.895 21.03 16.60 0.00 1.90
1054 1150 1.737816 GTGCATGCCTGGCTAATGG 59.262 57.895 21.03 5.80 0.00 3.16
1079 1175 2.757077 CTCGCACCTTTTCCCCCT 59.243 61.111 0.00 0.00 0.00 4.79
1179 1290 3.643398 GGGGGAGTCGCCATTAGT 58.357 61.111 26.04 0.00 44.52 2.24
1181 1292 0.680061 GGGGGAGTCGCCATTAGTAG 59.320 60.000 26.04 0.00 44.52 2.57
1182 1293 1.700955 GGGGAGTCGCCATTAGTAGA 58.299 55.000 20.82 0.00 38.95 2.59
1198 1309 7.094805 CCATTAGTAGAAGCACTAAACAAAGCA 60.095 37.037 0.28 0.00 42.63 3.91
1199 1310 5.931441 AGTAGAAGCACTAAACAAAGCAG 57.069 39.130 0.00 0.00 32.49 4.24
1209 1320 4.835615 ACTAAACAAAGCAGAGAGAGAGGA 59.164 41.667 0.00 0.00 0.00 3.71
1231 1342 0.108774 GAGGGCGAGGATAAAAGGGG 59.891 60.000 0.00 0.00 0.00 4.79
1232 1343 0.327191 AGGGCGAGGATAAAAGGGGA 60.327 55.000 0.00 0.00 0.00 4.81
1278 1392 1.735920 CGAGGCATAGCGGATCAGC 60.736 63.158 10.10 10.10 37.41 4.26
1281 1395 0.250209 AGGCATAGCGGATCAGCAAG 60.250 55.000 20.15 9.79 40.15 4.01
1282 1396 1.573436 GCATAGCGGATCAGCAAGC 59.427 57.895 20.15 15.43 40.15 4.01
1298 1412 4.863925 GCCCGCAGTCTCTCGCTC 62.864 72.222 0.00 0.00 0.00 5.03
1299 1413 3.137459 CCCGCAGTCTCTCGCTCT 61.137 66.667 0.00 0.00 0.00 4.09
1300 1414 2.407210 CCGCAGTCTCTCGCTCTC 59.593 66.667 0.00 0.00 0.00 3.20
1301 1415 2.022623 CGCAGTCTCTCGCTCTCG 59.977 66.667 0.00 0.00 0.00 4.04
1302 1416 2.277884 GCAGTCTCTCGCTCTCGC 60.278 66.667 0.00 0.00 35.26 5.03
1303 1417 2.407210 CAGTCTCTCGCTCTCGCC 59.593 66.667 0.00 0.00 35.26 5.54
1304 1418 2.826738 AGTCTCTCGCTCTCGCCC 60.827 66.667 0.00 0.00 35.26 6.13
1305 1419 2.826738 GTCTCTCGCTCTCGCCCT 60.827 66.667 0.00 0.00 35.26 5.19
1349 1463 4.237724 CATTTTCTTTCTTTTCCTCCGCC 58.762 43.478 0.00 0.00 0.00 6.13
1364 1478 1.268283 CCGCCCTCCTCTCCTTTTCT 61.268 60.000 0.00 0.00 0.00 2.52
1365 1479 0.107945 CGCCCTCCTCTCCTTTTCTG 60.108 60.000 0.00 0.00 0.00 3.02
1378 1492 1.174712 TTTTCTGCTGGCTGGCTGTC 61.175 55.000 9.69 3.40 33.78 3.51
1450 1568 1.291877 CGCACAACACCACTCTAGCC 61.292 60.000 0.00 0.00 0.00 3.93
1451 1569 0.955919 GCACAACACCACTCTAGCCC 60.956 60.000 0.00 0.00 0.00 5.19
1460 1578 0.618968 CACTCTAGCCCCAACTCCCT 60.619 60.000 0.00 0.00 0.00 4.20
1461 1579 0.325765 ACTCTAGCCCCAACTCCCTC 60.326 60.000 0.00 0.00 0.00 4.30
1462 1580 1.003051 TCTAGCCCCAACTCCCTCC 59.997 63.158 0.00 0.00 0.00 4.30
1463 1581 2.042261 TAGCCCCAACTCCCTCCC 59.958 66.667 0.00 0.00 0.00 4.30
1464 1582 2.840203 CTAGCCCCAACTCCCTCCCA 62.840 65.000 0.00 0.00 0.00 4.37
1465 1583 2.840203 TAGCCCCAACTCCCTCCCAG 62.840 65.000 0.00 0.00 0.00 4.45
1466 1584 3.732849 CCCCAACTCCCTCCCAGC 61.733 72.222 0.00 0.00 0.00 4.85
1467 1585 2.935481 CCCAACTCCCTCCCAGCA 60.935 66.667 0.00 0.00 0.00 4.41
1468 1586 2.673523 CCAACTCCCTCCCAGCAG 59.326 66.667 0.00 0.00 0.00 4.24
1469 1587 2.227036 CCAACTCCCTCCCAGCAGT 61.227 63.158 0.00 0.00 0.00 4.40
1470 1588 0.909610 CCAACTCCCTCCCAGCAGTA 60.910 60.000 0.00 0.00 0.00 2.74
1471 1589 0.539051 CAACTCCCTCCCAGCAGTAG 59.461 60.000 0.00 0.00 0.00 2.57
1472 1590 1.268283 AACTCCCTCCCAGCAGTAGC 61.268 60.000 0.00 0.00 42.56 3.58
1561 1706 4.443266 AGCAAGCTCCTCGCCGTC 62.443 66.667 0.00 0.00 40.39 4.79
1590 1737 1.425428 GCATTGCTTCCTCGGTTCG 59.575 57.895 0.16 0.00 0.00 3.95
1592 1739 1.745489 ATTGCTTCCTCGGTTCGGC 60.745 57.895 0.00 0.00 0.00 5.54
1594 1741 2.815647 GCTTCCTCGGTTCGGCTG 60.816 66.667 0.00 0.00 0.00 4.85
1595 1742 2.815647 CTTCCTCGGTTCGGCTGC 60.816 66.667 0.00 0.00 0.00 5.25
1596 1743 4.735132 TTCCTCGGTTCGGCTGCG 62.735 66.667 0.00 0.00 0.00 5.18
1709 1880 0.463833 ATTCGGTCCGAGATTTGGGC 60.464 55.000 14.79 0.00 37.14 5.36
1711 1882 2.582436 GGTCCGAGATTTGGGCGA 59.418 61.111 0.00 0.00 29.54 5.54
1712 1883 1.814169 GGTCCGAGATTTGGGCGAC 60.814 63.158 0.00 0.00 29.54 5.19
1724 1895 2.434359 GGCGACTTCCCCTGTTCG 60.434 66.667 0.00 0.00 0.00 3.95
1731 1902 1.152204 TTCCCCTGTTCGGAGTCCA 60.152 57.895 10.49 0.00 33.16 4.02
1742 1913 1.153349 GGAGTCCAGGATTCCGTGC 60.153 63.158 15.07 0.00 29.27 5.34
1789 1960 1.672356 GAGGAGCTTTCCTTGCGCA 60.672 57.895 5.66 5.66 40.86 6.09
1943 2121 6.642733 ATGAGGGAGGAGATTAACAAGAAA 57.357 37.500 0.00 0.00 0.00 2.52
1983 2183 4.202212 GCCTACTTCTTCCTCAATCTCTCC 60.202 50.000 0.00 0.00 0.00 3.71
2143 2343 1.324383 CACCACCCAAGGTAACCAAC 58.676 55.000 0.00 0.00 40.77 3.77
2154 2354 2.448926 GTAACCAACCAACAATGCCC 57.551 50.000 0.00 0.00 0.00 5.36
2157 2357 0.831711 ACCAACCAACAATGCCCTCC 60.832 55.000 0.00 0.00 0.00 4.30
2205 2405 3.199727 AGAGGAGGAAGGATTCTGCTTTC 59.800 47.826 0.00 0.00 46.56 2.62
2215 2415 2.440539 TTCTGCTTTCCTCTCACGAC 57.559 50.000 0.00 0.00 0.00 4.34
2332 2535 2.771763 CTTCCGTCGAGCTGCTGGTT 62.772 60.000 7.01 0.00 0.00 3.67
2362 2565 1.875963 CTTGCTGTGCGGTTTAGGG 59.124 57.895 0.00 0.00 0.00 3.53
2401 2610 4.579753 TGTTGAATGCAGTTTCAGTCATGA 59.420 37.500 3.16 0.00 40.18 3.07
2421 2630 2.911636 GACCTCCCCATCATCATCATCT 59.088 50.000 0.00 0.00 0.00 2.90
2432 2641 4.700700 TCATCATCATCTTGTGCCTGTAG 58.299 43.478 0.00 0.00 0.00 2.74
2603 2822 8.561738 AAATCAATGGTGTACAAGTACTTAGG 57.438 34.615 8.04 0.00 37.00 2.69
2661 2892 1.028905 TTTTGTTTGTCCGGAGCTGG 58.971 50.000 3.06 0.00 0.00 4.85
2927 3200 2.363147 GACCACGCTCCCCTCTCT 60.363 66.667 0.00 0.00 0.00 3.10
2929 3202 2.043450 CCACGCTCCCCTCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
2930 3203 2.124693 CCACGCTCCCCTCTCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
2931 3204 1.077068 CACGCTCCCCTCTCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
2932 3205 1.101049 CACGCTCCCCTCTCTCTCTC 61.101 65.000 0.00 0.00 0.00 3.20
2933 3206 1.279025 ACGCTCCCCTCTCTCTCTCT 61.279 60.000 0.00 0.00 0.00 3.10
2934 3207 0.535102 CGCTCCCCTCTCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
2935 3208 0.846693 GCTCCCCTCTCTCTCTCTCT 59.153 60.000 0.00 0.00 0.00 3.10
2936 3209 1.202818 GCTCCCCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
2937 3210 2.412591 CTCCCCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
2938 3211 2.370189 CTCCCCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
2939 3212 2.022035 TCCCCTCTCTCTCTCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
2940 3213 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
2941 3214 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
2942 3215 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
2943 3216 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
2944 3217 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
2945 3218 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2946 3219 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2947 3220 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2948 3221 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2949 3222 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2950 3223 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2951 3224 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2952 3225 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2953 3226 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2954 3227 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2955 3228 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2956 3229 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2957 3230 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2958 3231 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2959 3232 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3134 3417 8.375493 ACCCTACTTATCTGACTGTTCATTTA 57.625 34.615 0.00 0.00 0.00 1.40
3160 3443 2.107950 TCTGTTGTTCCTTATGGGCG 57.892 50.000 0.00 0.00 34.39 6.13
3163 3446 3.199071 TCTGTTGTTCCTTATGGGCGTAT 59.801 43.478 0.00 0.00 34.39 3.06
3167 3453 5.071250 TGTTGTTCCTTATGGGCGTATAGAT 59.929 40.000 0.00 0.00 34.39 1.98
3208 3494 2.032290 TCGATCGCGTTCGTAGATCAAT 60.032 45.455 31.48 3.90 40.39 2.57
3274 3561 2.288886 GGTACCACCTGTTCACTGTCTC 60.289 54.545 7.15 0.00 34.73 3.36
3311 3598 6.025749 TGTAGTAATAGGGATTCGATGCAG 57.974 41.667 0.00 0.00 0.00 4.41
3363 3650 5.001232 ACCAGAGCTAGTTTTCGCAATTTA 58.999 37.500 0.00 0.00 0.00 1.40
3488 3776 4.414337 AGATTTAGATGACTGGCTCCAC 57.586 45.455 0.00 0.00 0.00 4.02
3497 3785 0.472734 ACTGGCTCCACTCTTCACCT 60.473 55.000 0.00 0.00 0.00 4.00
3518 3806 4.020396 CCTCCTGCTGATATCTATGTGCTT 60.020 45.833 3.98 0.00 0.00 3.91
3526 3814 5.491070 TGATATCTATGTGCTTGGGTATGC 58.509 41.667 3.98 0.00 0.00 3.14
3541 3829 2.099756 GGTATGCATTGTCAAAGCCTCC 59.900 50.000 3.54 6.35 0.00 4.30
3545 3833 1.945819 GCATTGTCAAAGCCTCCGAGA 60.946 52.381 1.22 0.00 0.00 4.04
3553 3841 0.827368 AAGCCTCCGAGACCTTCATC 59.173 55.000 0.00 0.00 0.00 2.92
3554 3842 0.032615 AGCCTCCGAGACCTTCATCT 60.033 55.000 0.00 0.00 0.00 2.90
3560 3848 4.100189 CCTCCGAGACCTTCATCTTGTAAT 59.900 45.833 0.00 0.00 0.00 1.89
3564 3852 6.371548 TCCGAGACCTTCATCTTGTAATTTTG 59.628 38.462 0.00 0.00 0.00 2.44
3565 3853 6.149474 CCGAGACCTTCATCTTGTAATTTTGT 59.851 38.462 0.00 0.00 0.00 2.83
3566 3854 7.333423 CCGAGACCTTCATCTTGTAATTTTGTA 59.667 37.037 0.00 0.00 0.00 2.41
3567 3855 8.169268 CGAGACCTTCATCTTGTAATTTTGTAC 58.831 37.037 0.00 0.00 0.00 2.90
3568 3856 9.220767 GAGACCTTCATCTTGTAATTTTGTACT 57.779 33.333 0.00 0.00 0.00 2.73
3569 3857 9.574516 AGACCTTCATCTTGTAATTTTGTACTT 57.425 29.630 0.00 0.00 0.00 2.24
3570 3858 9.827411 GACCTTCATCTTGTAATTTTGTACTTC 57.173 33.333 0.00 0.00 0.00 3.01
3588 3879 7.163027 GTACTTCAAGTACTGTGTTCTTGAC 57.837 40.000 18.94 5.54 44.92 3.18
3589 3880 4.804139 ACTTCAAGTACTGTGTTCTTGACG 59.196 41.667 15.70 15.87 44.92 4.35
3590 3881 4.642445 TCAAGTACTGTGTTCTTGACGA 57.358 40.909 13.18 0.00 42.13 4.20
3591 3882 4.607955 TCAAGTACTGTGTTCTTGACGAG 58.392 43.478 13.18 0.00 42.13 4.18
3592 3883 4.337274 TCAAGTACTGTGTTCTTGACGAGA 59.663 41.667 13.18 0.00 42.13 4.04
3593 3884 4.491234 AGTACTGTGTTCTTGACGAGAG 57.509 45.455 0.00 0.00 35.37 3.20
3594 3885 2.141535 ACTGTGTTCTTGACGAGAGC 57.858 50.000 0.00 0.00 35.37 4.09
3595 3886 1.683917 ACTGTGTTCTTGACGAGAGCT 59.316 47.619 7.93 0.00 36.63 4.09
3596 3887 2.885266 ACTGTGTTCTTGACGAGAGCTA 59.115 45.455 7.93 0.00 36.63 3.32
3611 3902 6.740110 ACGAGAGCTATGTCCTTTAACTATG 58.260 40.000 0.00 0.00 0.00 2.23
3613 3904 7.147880 ACGAGAGCTATGTCCTTTAACTATGTT 60.148 37.037 0.00 0.00 0.00 2.71
3741 4032 2.158813 GGACACTGAACAAGAACCCTGA 60.159 50.000 0.00 0.00 0.00 3.86
3859 4150 2.094675 AGCTCATCATTTTTCCACCGG 58.905 47.619 0.00 0.00 0.00 5.28
3971 4262 1.272480 ACCCAGTTAACATTGGAGGCC 60.272 52.381 13.99 0.00 36.55 5.19
4117 4408 5.131642 ACCTATGGAAGAAGATGATGAGCAA 59.868 40.000 0.00 0.00 0.00 3.91
4149 4440 6.768381 ACTTCTAGGTATTATCTTTTGGCAGC 59.232 38.462 0.00 0.00 0.00 5.25
4156 4549 6.990349 GGTATTATCTTTTGGCAGCTGTACTA 59.010 38.462 16.64 3.07 0.00 1.82
4157 4550 7.497909 GGTATTATCTTTTGGCAGCTGTACTAA 59.502 37.037 16.64 9.22 0.00 2.24
4215 4619 6.785164 GCACTAACACAAATATTTTGTTTGCG 59.215 34.615 22.30 17.85 39.55 4.85
4286 4698 2.812011 AGTTTGGGTACGCAGTGAAATC 59.188 45.455 12.78 0.00 45.73 2.17
4332 4744 4.949121 AGTTTCCTGTGTAGGTAGAGGAT 58.051 43.478 0.00 0.00 44.88 3.24
4360 4779 9.777008 AATGGGTTATCTTGGAAATAAGGTAAA 57.223 29.630 0.00 0.00 35.62 2.01
4370 4789 7.079182 TGGAAATAAGGTAAAATGCTGTACG 57.921 36.000 0.00 0.00 0.00 3.67
4404 4823 6.954616 TGCACTTGCTTGATTTTGATAATG 57.045 33.333 2.33 0.00 42.66 1.90
4405 4824 5.870433 TGCACTTGCTTGATTTTGATAATGG 59.130 36.000 2.33 0.00 42.66 3.16
4422 4841 8.359875 TGATAATGGTGTATGGTTCATTGTTT 57.640 30.769 0.00 0.00 32.81 2.83
4423 4842 8.465999 TGATAATGGTGTATGGTTCATTGTTTC 58.534 33.333 0.00 0.00 32.81 2.78
4538 4967 2.227388 CTGTTGTCATTTGACCTCTGGC 59.773 50.000 8.16 0.00 44.15 4.85
4589 5018 7.499563 AGAAATTCTGATGTCATGGAGATCTTG 59.500 37.037 0.00 0.00 34.11 3.02
4677 5106 8.334263 TGAGCATGAGTATGTATTTGTTTTCA 57.666 30.769 0.00 0.00 36.65 2.69
4708 5137 5.435686 ACATAGTAATGTGGAAGCCAGAA 57.564 39.130 0.00 0.00 44.79 3.02
4872 5302 7.013464 AGAGATCAGGTAATTTACACTACTCCG 59.987 40.741 8.73 0.00 0.00 4.63
4895 5325 5.618195 CGTTACACGGCAAGGTTAATTTCAT 60.618 40.000 0.00 0.00 38.08 2.57
5322 5752 2.159382 GCGGAGGTTGAAATTCTCCAA 58.841 47.619 9.97 0.00 45.40 3.53
5418 5848 7.824779 AGCCATGGAAACTTAAAGTTCTACTAG 59.175 37.037 18.40 0.00 37.47 2.57
5445 5882 7.090808 TCTCCATGCTATAAGTAAGTATTGCG 58.909 38.462 0.00 0.00 35.70 4.85
5480 5922 0.036022 AGCTGACCAGTTGCTTCTCC 59.964 55.000 0.00 0.00 32.61 3.71
5490 5932 4.156739 CCAGTTGCTTCTCCATTAAGAACC 59.843 45.833 0.00 0.00 32.03 3.62
5491 5933 5.006386 CAGTTGCTTCTCCATTAAGAACCT 58.994 41.667 0.00 0.00 32.03 3.50
5492 5934 5.474876 CAGTTGCTTCTCCATTAAGAACCTT 59.525 40.000 0.00 0.00 32.03 3.50
5542 5990 6.432162 ACACATCTCTTCTGTTTATGCAATGT 59.568 34.615 0.00 0.00 0.00 2.71
5633 6084 8.772705 TGTGCAATATTTTTCCATCTGTTTTTC 58.227 29.630 0.00 0.00 0.00 2.29
5634 6085 7.951565 GTGCAATATTTTTCCATCTGTTTTTCG 59.048 33.333 0.00 0.00 0.00 3.46
5635 6086 7.655328 TGCAATATTTTTCCATCTGTTTTTCGT 59.345 29.630 0.00 0.00 0.00 3.85
5679 6130 3.374764 TGTAAAGCCTAGGAGAGATGCA 58.625 45.455 14.75 0.01 0.00 3.96
5680 6131 3.386078 TGTAAAGCCTAGGAGAGATGCAG 59.614 47.826 14.75 0.00 0.00 4.41
5691 6142 2.439507 GAGAGATGCAGGGGGAACATTA 59.560 50.000 0.00 0.00 0.00 1.90
5703 6154 4.161377 GGGGGAACATTATAGCTGCAAAAA 59.839 41.667 1.02 0.00 0.00 1.94
5827 6284 1.683917 TGCAACTAACAATTTGCCCGT 59.316 42.857 3.99 0.00 46.28 5.28
5898 6355 5.073311 TGACTATACAACTCAACCAGCTC 57.927 43.478 0.00 0.00 0.00 4.09
5901 6358 2.724977 TACAACTCAACCAGCTCTCG 57.275 50.000 0.00 0.00 0.00 4.04
5902 6359 0.601311 ACAACTCAACCAGCTCTCGC 60.601 55.000 0.00 0.00 0.00 5.03
5903 6360 1.004440 AACTCAACCAGCTCTCGCC 60.004 57.895 0.00 0.00 36.60 5.54
5908 6365 2.217038 AACCAGCTCTCGCCTTCCA 61.217 57.895 0.00 0.00 36.60 3.53
5909 6366 2.177594 AACCAGCTCTCGCCTTCCAG 62.178 60.000 0.00 0.00 36.60 3.86
5910 6367 2.654079 CCAGCTCTCGCCTTCCAGT 61.654 63.158 0.00 0.00 36.60 4.00
5911 6368 1.153667 CAGCTCTCGCCTTCCAGTC 60.154 63.158 0.00 0.00 36.60 3.51
5912 6369 2.185608 GCTCTCGCCTTCCAGTCC 59.814 66.667 0.00 0.00 0.00 3.85
5913 6370 2.650116 GCTCTCGCCTTCCAGTCCA 61.650 63.158 0.00 0.00 0.00 4.02
5914 6371 1.965754 GCTCTCGCCTTCCAGTCCAT 61.966 60.000 0.00 0.00 0.00 3.41
5915 6372 0.539051 CTCTCGCCTTCCAGTCCATT 59.461 55.000 0.00 0.00 0.00 3.16
5916 6373 0.537188 TCTCGCCTTCCAGTCCATTC 59.463 55.000 0.00 0.00 0.00 2.67
6104 6566 4.649267 TGATACTTGGATTGGACCAACA 57.351 40.909 9.67 0.64 43.79 3.33
6136 6601 7.827236 AGTTGTTAGTTTTTCCGGATGATGATA 59.173 33.333 4.15 0.00 0.00 2.15
6257 6723 1.117150 ACATGATGCCTCCATTTGCC 58.883 50.000 0.00 0.00 0.00 4.52
6258 6724 0.031585 CATGATGCCTCCATTTGCCG 59.968 55.000 0.00 0.00 0.00 5.69
6379 6850 2.609427 TAGTGCAGTGCCTCATCATC 57.391 50.000 13.72 0.00 0.00 2.92
6399 6870 9.803130 CATCATCGTAGTTCTTTTATGCTAATG 57.197 33.333 0.00 0.00 0.00 1.90
6400 6871 7.851508 TCATCGTAGTTCTTTTATGCTAATGC 58.148 34.615 0.00 0.00 40.20 3.56
6415 6886 3.065371 GCTAATGCGAAACATAAGCTGGT 59.935 43.478 0.00 0.00 38.34 4.00
6417 6888 1.164411 TGCGAAACATAAGCTGGTGG 58.836 50.000 0.00 0.00 0.00 4.61
6424 6895 5.276678 CGAAACATAAGCTGGTGGTTATACG 60.277 44.000 2.18 0.00 42.76 3.06
6426 6897 5.857471 ACATAAGCTGGTGGTTATACGTA 57.143 39.130 0.00 0.00 42.76 3.57
6427 6898 6.224665 ACATAAGCTGGTGGTTATACGTAA 57.775 37.500 0.00 0.00 42.76 3.18
6428 6899 6.278363 ACATAAGCTGGTGGTTATACGTAAG 58.722 40.000 0.00 0.00 42.76 2.34
6429 6900 4.813750 AAGCTGGTGGTTATACGTAAGT 57.186 40.909 0.00 0.00 42.86 2.24
6430 6901 5.156608 AAGCTGGTGGTTATACGTAAGTT 57.843 39.130 0.00 0.00 41.30 2.66
6432 6903 6.593515 AAGCTGGTGGTTATACGTAAGTTGC 61.594 44.000 0.00 0.00 41.30 4.17
6475 6953 5.063880 GCCATTAGATTAAGATCCAACGGT 58.936 41.667 0.00 0.00 32.44 4.83
6481 6959 1.646912 TAAGATCCAACGGTGGTCCA 58.353 50.000 21.31 0.00 46.11 4.02
6508 6986 1.645710 TCTTCCTCCGGCTTTCTTCT 58.354 50.000 0.00 0.00 0.00 2.85
6522 7000 4.502087 GCTTTCTTCTTGCTCCAACCATTT 60.502 41.667 0.00 0.00 0.00 2.32
6526 7004 3.507162 TCTTGCTCCAACCATTTCTCA 57.493 42.857 0.00 0.00 0.00 3.27
6529 7007 4.834496 TCTTGCTCCAACCATTTCTCATTT 59.166 37.500 0.00 0.00 0.00 2.32
6553 7031 4.323336 CGCAAAATCGACTAACCCAAATTG 59.677 41.667 0.00 0.00 0.00 2.32
6658 7136 6.737720 ATCAAGTGGAGCATCAAGATAGTA 57.262 37.500 0.00 0.00 36.25 1.82
6659 7137 5.907207 TCAAGTGGAGCATCAAGATAGTAC 58.093 41.667 0.00 0.00 36.25 2.73
6715 7193 2.785713 TTTTTGCCGTTGCTTACTCC 57.214 45.000 0.00 0.00 38.71 3.85
6729 7207 2.105006 TACTCCGCAGTCTACGTTCT 57.895 50.000 0.00 0.00 33.62 3.01
6880 7358 4.035208 CACGGTTAATCTGGAGTTAATGGC 59.965 45.833 0.00 0.00 0.00 4.40
6881 7359 4.080526 ACGGTTAATCTGGAGTTAATGGCT 60.081 41.667 0.00 0.00 0.00 4.75
6882 7360 4.273480 CGGTTAATCTGGAGTTAATGGCTG 59.727 45.833 0.00 0.00 0.00 4.85
6883 7361 4.580580 GGTTAATCTGGAGTTAATGGCTGG 59.419 45.833 0.00 0.00 0.00 4.85
6884 7362 5.193679 GTTAATCTGGAGTTAATGGCTGGT 58.806 41.667 0.00 0.00 0.00 4.00
6885 7363 4.322057 AATCTGGAGTTAATGGCTGGTT 57.678 40.909 0.00 0.00 0.00 3.67
6984 7463 6.380190 AGTAGACTGAAAGCTGTTAGTTACG 58.620 40.000 2.34 0.00 37.60 3.18
6987 7466 4.304939 ACTGAAAGCTGTTAGTTACGGAC 58.695 43.478 0.00 0.00 37.60 4.79
6997 7476 4.037803 TGTTAGTTACGGACTTGCAGTACA 59.962 41.667 0.00 0.00 39.86 2.90
6998 7477 3.955650 AGTTACGGACTTGCAGTACAT 57.044 42.857 0.00 0.00 33.92 2.29
7000 7479 2.554806 TACGGACTTGCAGTACATCG 57.445 50.000 0.00 0.00 0.00 3.84
7021 7500 0.252012 AGATGGGAGATCTAGCGGGG 60.252 60.000 0.00 0.00 0.00 5.73
7050 7529 2.572333 GATAAAGGGCAGCTGGGGCA 62.572 60.000 17.12 0.00 41.70 5.36
7051 7530 1.953100 ATAAAGGGCAGCTGGGGCAT 61.953 55.000 17.12 0.00 41.70 4.40
7184 7665 9.962783 GTTTATCGTCAGTGGTATTATTCTACT 57.037 33.333 0.00 0.00 0.00 2.57
7188 7669 7.512130 TCGTCAGTGGTATTATTCTACTCCTA 58.488 38.462 0.00 0.00 0.00 2.94
7189 7670 8.162085 TCGTCAGTGGTATTATTCTACTCCTAT 58.838 37.037 0.00 0.00 0.00 2.57
7221 7702 4.770795 ACAGGTTGCCAGAATATACACTC 58.229 43.478 0.00 0.00 0.00 3.51
7224 7705 4.051922 GGTTGCCAGAATATACACTCTCG 58.948 47.826 0.00 0.00 0.00 4.04
7267 8012 4.015872 TCCACTTGGAATGAAGTACCAC 57.984 45.455 0.00 0.00 42.18 4.16
7269 8014 4.841813 TCCACTTGGAATGAAGTACCACTA 59.158 41.667 0.00 0.00 42.18 2.74
7270 8015 5.487488 TCCACTTGGAATGAAGTACCACTAT 59.513 40.000 0.00 0.00 42.18 2.12
7272 8017 6.986817 CCACTTGGAATGAAGTACCACTATAG 59.013 42.308 0.00 0.00 34.29 1.31
7311 8077 2.235016 GCATGTACCAGGGTCAAACAA 58.765 47.619 0.00 0.00 0.00 2.83
7327 8096 7.147776 GGGTCAAACAAGCTAGTAGTAGGATAA 60.148 40.741 6.73 0.00 0.00 1.75
7406 8176 1.078848 GAAGGCTGTGCTCGGTGAT 60.079 57.895 0.00 0.00 0.00 3.06
7410 8180 1.374631 GCTGTGCTCGGTGATGTCA 60.375 57.895 0.00 0.00 0.00 3.58
7411 8181 0.742281 GCTGTGCTCGGTGATGTCAT 60.742 55.000 0.00 0.00 0.00 3.06
7537 8313 2.753043 CATGGCACTGGTCCCTGC 60.753 66.667 0.00 0.69 0.00 4.85
7545 8321 3.931631 CTGGTCCCTGCCTCCCTGA 62.932 68.421 0.00 0.00 0.00 3.86
7549 8325 3.013932 CCCTGCCTCCCTGAAGCT 61.014 66.667 0.00 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.217429 TTTGAACTTCGCTTTTGCCC 57.783 45.000 0.00 0.00 43.93 5.36
12 13 3.364920 GCTATTTGAACTTCGCTTTTGCC 59.635 43.478 0.00 0.00 43.93 4.52
14 15 3.603770 CCGCTATTTGAACTTCGCTTTTG 59.396 43.478 0.00 0.00 0.00 2.44
21 22 1.810151 TGCACCCGCTATTTGAACTTC 59.190 47.619 0.00 0.00 39.64 3.01
23 24 1.165270 GTGCACCCGCTATTTGAACT 58.835 50.000 5.22 0.00 39.64 3.01
26 27 1.539388 CTTTGTGCACCCGCTATTTGA 59.461 47.619 15.69 0.00 39.64 2.69
31 32 4.057224 CACTTTGTGCACCCGCTA 57.943 55.556 15.69 0.00 39.64 4.26
43 47 1.597742 ACAGAATCAGCACGCACTTT 58.402 45.000 0.00 0.00 0.00 2.66
76 80 2.608546 CGACAGGGTTACACACGAAAAA 59.391 45.455 0.00 0.00 0.00 1.94
77 81 2.159128 TCGACAGGGTTACACACGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
78 82 1.408340 TCGACAGGGTTACACACGAAA 59.592 47.619 0.00 0.00 0.00 3.46
79 83 1.031235 TCGACAGGGTTACACACGAA 58.969 50.000 0.00 0.00 0.00 3.85
80 84 1.200716 GATCGACAGGGTTACACACGA 59.799 52.381 4.50 4.50 0.00 4.35
81 85 1.625616 GATCGACAGGGTTACACACG 58.374 55.000 0.00 0.00 0.00 4.49
82 86 1.274167 TGGATCGACAGGGTTACACAC 59.726 52.381 0.00 0.00 0.00 3.82
83 87 1.634960 TGGATCGACAGGGTTACACA 58.365 50.000 0.00 0.00 0.00 3.72
84 88 2.431057 AGATGGATCGACAGGGTTACAC 59.569 50.000 0.00 0.00 0.00 2.90
85 89 2.430694 CAGATGGATCGACAGGGTTACA 59.569 50.000 0.00 0.00 0.00 2.41
86 90 2.693591 TCAGATGGATCGACAGGGTTAC 59.306 50.000 0.00 0.00 0.00 2.50
87 91 3.026707 TCAGATGGATCGACAGGGTTA 57.973 47.619 0.00 0.00 0.00 2.85
88 92 1.866015 TCAGATGGATCGACAGGGTT 58.134 50.000 0.00 0.00 0.00 4.11
89 93 1.759445 CTTCAGATGGATCGACAGGGT 59.241 52.381 0.00 0.00 0.00 4.34
90 94 1.539929 GCTTCAGATGGATCGACAGGG 60.540 57.143 0.00 0.00 0.00 4.45
91 95 1.539929 GGCTTCAGATGGATCGACAGG 60.540 57.143 0.00 0.00 0.00 4.00
92 96 1.539929 GGGCTTCAGATGGATCGACAG 60.540 57.143 0.00 0.00 0.00 3.51
93 97 0.465705 GGGCTTCAGATGGATCGACA 59.534 55.000 0.00 0.00 0.00 4.35
94 98 0.465705 TGGGCTTCAGATGGATCGAC 59.534 55.000 0.00 0.00 0.00 4.20
95 99 0.465705 GTGGGCTTCAGATGGATCGA 59.534 55.000 0.00 0.00 0.00 3.59
96 100 0.467384 AGTGGGCTTCAGATGGATCG 59.533 55.000 0.00 0.00 0.00 3.69
97 101 1.211457 ACAGTGGGCTTCAGATGGATC 59.789 52.381 0.00 0.00 0.00 3.36
98 102 1.064906 CACAGTGGGCTTCAGATGGAT 60.065 52.381 0.00 0.00 0.00 3.41
99 103 0.325933 CACAGTGGGCTTCAGATGGA 59.674 55.000 0.00 0.00 0.00 3.41
100 104 0.037303 ACACAGTGGGCTTCAGATGG 59.963 55.000 5.31 0.00 0.00 3.51
101 105 1.538512 CAACACAGTGGGCTTCAGATG 59.461 52.381 5.31 0.00 0.00 2.90
102 106 1.143684 ACAACACAGTGGGCTTCAGAT 59.856 47.619 5.31 0.00 0.00 2.90
103 107 0.546122 ACAACACAGTGGGCTTCAGA 59.454 50.000 5.31 0.00 0.00 3.27
104 108 0.664761 CACAACACAGTGGGCTTCAG 59.335 55.000 5.31 0.00 35.88 3.02
105 109 0.254462 TCACAACACAGTGGGCTTCA 59.746 50.000 5.31 0.00 39.93 3.02
106 110 0.663153 GTCACAACACAGTGGGCTTC 59.337 55.000 5.31 0.00 39.93 3.86
107 111 1.095228 CGTCACAACACAGTGGGCTT 61.095 55.000 5.31 0.00 39.93 4.35
108 112 1.523711 CGTCACAACACAGTGGGCT 60.524 57.895 5.31 0.00 39.93 5.19
109 113 1.092921 TTCGTCACAACACAGTGGGC 61.093 55.000 5.31 0.00 39.93 5.36
110 114 0.937304 CTTCGTCACAACACAGTGGG 59.063 55.000 5.31 0.00 39.93 4.61
111 115 1.934589 TCTTCGTCACAACACAGTGG 58.065 50.000 5.31 0.00 39.93 4.00
112 116 5.845985 ATTATCTTCGTCACAACACAGTG 57.154 39.130 0.00 0.00 40.85 3.66
113 117 6.861065 AAATTATCTTCGTCACAACACAGT 57.139 33.333 0.00 0.00 0.00 3.55
140 144 4.674281 ATCTTGGTTTTACCCGCAAAAA 57.326 36.364 0.00 0.00 37.50 1.94
141 145 5.986501 ATATCTTGGTTTTACCCGCAAAA 57.013 34.783 0.00 0.00 37.50 2.44
142 146 5.986501 AATATCTTGGTTTTACCCGCAAA 57.013 34.783 0.00 0.00 37.50 3.68
143 147 5.986501 AAATATCTTGGTTTTACCCGCAA 57.013 34.783 0.00 0.00 37.50 4.85
144 148 5.986501 AAAATATCTTGGTTTTACCCGCA 57.013 34.783 0.00 0.00 37.50 5.69
145 149 5.513849 CGAAAAATATCTTGGTTTTACCCGC 59.486 40.000 0.00 0.00 37.50 6.13
146 150 6.525280 CACGAAAAATATCTTGGTTTTACCCG 59.475 38.462 0.00 0.00 37.50 5.28
147 151 7.327518 CACACGAAAAATATCTTGGTTTTACCC 59.672 37.037 0.00 0.00 37.50 3.69
148 152 7.863877 ACACACGAAAAATATCTTGGTTTTACC 59.136 33.333 0.00 0.00 39.22 2.85
149 153 8.791355 ACACACGAAAAATATCTTGGTTTTAC 57.209 30.769 0.00 0.00 0.00 2.01
151 155 9.240159 GTTACACACGAAAAATATCTTGGTTTT 57.760 29.630 0.00 0.00 0.00 2.43
152 156 8.626526 AGTTACACACGAAAAATATCTTGGTTT 58.373 29.630 0.00 0.00 0.00 3.27
153 157 8.161699 AGTTACACACGAAAAATATCTTGGTT 57.838 30.769 0.00 0.00 0.00 3.67
154 158 7.660208 AGAGTTACACACGAAAAATATCTTGGT 59.340 33.333 0.00 0.00 0.00 3.67
155 159 7.957484 CAGAGTTACACACGAAAAATATCTTGG 59.043 37.037 0.00 0.00 0.00 3.61
156 160 8.495949 ACAGAGTTACACACGAAAAATATCTTG 58.504 33.333 0.00 0.00 0.00 3.02
157 161 8.603242 ACAGAGTTACACACGAAAAATATCTT 57.397 30.769 0.00 0.00 0.00 2.40
158 162 7.061905 CGACAGAGTTACACACGAAAAATATCT 59.938 37.037 0.00 0.00 0.00 1.98
159 163 7.061441 TCGACAGAGTTACACACGAAAAATATC 59.939 37.037 0.00 0.00 0.00 1.63
160 164 6.864685 TCGACAGAGTTACACACGAAAAATAT 59.135 34.615 0.00 0.00 0.00 1.28
161 165 6.207928 TCGACAGAGTTACACACGAAAAATA 58.792 36.000 0.00 0.00 0.00 1.40
162 166 5.045215 TCGACAGAGTTACACACGAAAAAT 58.955 37.500 0.00 0.00 0.00 1.82
211 215 1.617357 AGTAATATCTCGGCCGGAACC 59.383 52.381 27.83 5.41 0.00 3.62
230 234 1.756538 ACAAAAGGTTGCCCTGAACAG 59.243 47.619 0.00 0.00 41.56 3.16
388 401 2.576191 CTGGGTGGATTTTCAGAGGGTA 59.424 50.000 0.00 0.00 0.00 3.69
389 402 1.355720 CTGGGTGGATTTTCAGAGGGT 59.644 52.381 0.00 0.00 0.00 4.34
430 443 1.153628 CCTCCCAACACGATCGACC 60.154 63.158 24.34 0.00 0.00 4.79
434 447 1.153349 GGCTCCTCCCAACACGATC 60.153 63.158 0.00 0.00 0.00 3.69
484 528 0.533491 TCCCGGTTTACATCGACTGG 59.467 55.000 0.00 0.00 41.13 4.00
486 530 1.553706 ACTCCCGGTTTACATCGACT 58.446 50.000 0.00 0.00 0.00 4.18
531 575 7.554835 TGTGTTGGTGTATGTAAACTCTCTTTT 59.445 33.333 0.00 0.00 0.00 2.27
533 577 6.482308 GTGTGTTGGTGTATGTAAACTCTCTT 59.518 38.462 0.00 0.00 0.00 2.85
534 578 5.989777 GTGTGTTGGTGTATGTAAACTCTCT 59.010 40.000 0.00 0.00 0.00 3.10
590 634 2.210116 TCTTCTCGCACGCTTTTTCTT 58.790 42.857 0.00 0.00 0.00 2.52
672 718 0.400213 GTCATTGACAGGTGGGACCA 59.600 55.000 11.93 0.00 41.95 4.02
687 734 1.378646 TCTCCTCTCCGCACGTCAT 60.379 57.895 0.00 0.00 0.00 3.06
690 737 2.282251 TGTCTCCTCTCCGCACGT 60.282 61.111 0.00 0.00 0.00 4.49
693 740 3.071206 GCCTGTCTCCTCTCCGCA 61.071 66.667 0.00 0.00 0.00 5.69
709 771 1.237285 ACGTGCCAGTTTCCATCTGC 61.237 55.000 0.00 0.00 0.00 4.26
751 813 2.348998 GTCAGTCAGTGGGGCAGG 59.651 66.667 0.00 0.00 0.00 4.85
755 817 2.343758 CACCGTCAGTCAGTGGGG 59.656 66.667 0.00 0.00 0.00 4.96
758 820 2.343758 CCCCACCGTCAGTCAGTG 59.656 66.667 0.00 0.00 0.00 3.66
759 821 3.626924 GCCCCACCGTCAGTCAGT 61.627 66.667 0.00 0.00 0.00 3.41
848 914 2.434331 CGGAAAGAACAGGGCCCA 59.566 61.111 27.56 0.00 0.00 5.36
856 922 0.317854 GCACACTTGCCGGAAAGAAC 60.318 55.000 29.73 10.63 43.66 3.01
901 968 2.355444 TGGGTCTTTCCGAAAACGAAAC 59.645 45.455 0.00 0.00 37.00 2.78
902 969 2.355444 GTGGGTCTTTCCGAAAACGAAA 59.645 45.455 0.00 0.00 37.00 3.46
903 970 1.941975 GTGGGTCTTTCCGAAAACGAA 59.058 47.619 0.00 0.00 37.00 3.85
904 971 1.585297 GTGGGTCTTTCCGAAAACGA 58.415 50.000 0.00 0.00 37.00 3.85
905 972 0.589708 GGTGGGTCTTTCCGAAAACG 59.410 55.000 0.00 0.00 37.00 3.60
906 973 0.956633 GGGTGGGTCTTTCCGAAAAC 59.043 55.000 0.00 0.00 37.00 2.43
974 1056 3.728279 AATAACTCGGCGGGGCGTC 62.728 63.158 13.20 0.00 0.00 5.19
975 1057 3.319441 AAATAACTCGGCGGGGCGT 62.319 57.895 13.20 0.00 0.00 5.68
1051 1147 1.601759 GGTGCGAGCATATGGCCAT 60.602 57.895 24.45 24.45 46.50 4.40
1053 1149 1.103398 AAAGGTGCGAGCATATGGCC 61.103 55.000 4.56 0.00 46.50 5.36
1054 1150 0.740737 AAAAGGTGCGAGCATATGGC 59.259 50.000 4.56 0.00 45.30 4.40
1055 1151 1.334869 GGAAAAGGTGCGAGCATATGG 59.665 52.381 4.56 0.00 0.00 2.74
1056 1152 1.334869 GGGAAAAGGTGCGAGCATATG 59.665 52.381 0.00 0.00 0.00 1.78
1057 1153 1.680338 GGGAAAAGGTGCGAGCATAT 58.320 50.000 0.00 0.00 0.00 1.78
1060 1156 2.282180 GGGGAAAAGGTGCGAGCA 60.282 61.111 0.00 0.00 0.00 4.26
1061 1157 3.062466 GGGGGAAAAGGTGCGAGC 61.062 66.667 0.00 0.00 0.00 5.03
1062 1158 1.377333 GAGGGGGAAAAGGTGCGAG 60.377 63.158 0.00 0.00 0.00 5.03
1079 1175 2.203938 AGGGTTTGAGGCTCGGGA 60.204 61.111 10.42 0.00 0.00 5.14
1165 1276 2.100916 TGCTTCTACTAATGGCGACTCC 59.899 50.000 0.00 0.00 0.00 3.85
1166 1277 3.117046 GTGCTTCTACTAATGGCGACTC 58.883 50.000 0.00 0.00 0.00 3.36
1179 1290 5.853936 TCTCTGCTTTGTTTAGTGCTTCTA 58.146 37.500 0.00 0.00 0.00 2.10
1181 1292 4.752101 TCTCTCTGCTTTGTTTAGTGCTTC 59.248 41.667 0.00 0.00 0.00 3.86
1182 1293 4.708177 TCTCTCTGCTTTGTTTAGTGCTT 58.292 39.130 0.00 0.00 0.00 3.91
1198 1309 0.846693 GCCCTCTCTCCTCTCTCTCT 59.153 60.000 0.00 0.00 0.00 3.10
1199 1310 0.535102 CGCCCTCTCTCCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
1209 1320 2.043227 CCTTTTATCCTCGCCCTCTCT 58.957 52.381 0.00 0.00 0.00 3.10
1257 1371 1.080434 GATCCGCTATGCCTCGTCC 60.080 63.158 0.00 0.00 0.00 4.79
1278 1392 2.507992 CGAGAGACTGCGGGCTTG 60.508 66.667 0.07 0.00 0.00 4.01
1281 1395 4.863925 GAGCGAGAGACTGCGGGC 62.864 72.222 0.00 0.00 35.87 6.13
1282 1396 3.119709 GAGAGCGAGAGACTGCGGG 62.120 68.421 0.00 0.00 35.87 6.13
1349 1463 1.065564 CCAGCAGAAAAGGAGAGGAGG 60.066 57.143 0.00 0.00 0.00 4.30
1364 1478 3.124051 AACAGACAGCCAGCCAGCA 62.124 57.895 0.00 0.00 34.23 4.41
1365 1479 2.282040 AACAGACAGCCAGCCAGC 60.282 61.111 0.00 0.00 0.00 4.85
1378 1492 0.661187 GTCGGTGTGCAATGCAACAG 60.661 55.000 10.44 11.32 41.47 3.16
1450 1568 2.935481 TGCTGGGAGGGAGTTGGG 60.935 66.667 0.00 0.00 0.00 4.12
1451 1569 0.909610 TACTGCTGGGAGGGAGTTGG 60.910 60.000 0.00 0.00 38.72 3.77
1460 1578 2.423898 GCTACCGCTACTGCTGGGA 61.424 63.158 0.00 0.00 37.25 4.37
1461 1579 2.107141 GCTACCGCTACTGCTGGG 59.893 66.667 0.00 0.00 37.25 4.45
1462 1580 1.227089 CTGCTACCGCTACTGCTGG 60.227 63.158 0.00 0.00 38.30 4.85
1463 1581 1.880340 GCTGCTACCGCTACTGCTG 60.880 63.158 0.00 0.00 36.97 4.41
1464 1582 2.351244 TGCTGCTACCGCTACTGCT 61.351 57.895 0.00 0.00 36.97 4.24
1465 1583 2.167861 GTGCTGCTACCGCTACTGC 61.168 63.158 0.00 0.00 36.97 4.40
1466 1584 1.519455 GGTGCTGCTACCGCTACTG 60.519 63.158 0.00 0.00 36.97 2.74
1467 1585 1.949847 CTGGTGCTGCTACCGCTACT 61.950 60.000 13.83 0.00 43.87 2.57
1468 1586 1.519455 CTGGTGCTGCTACCGCTAC 60.519 63.158 13.83 0.00 43.87 3.58
1469 1587 0.681887 TACTGGTGCTGCTACCGCTA 60.682 55.000 13.83 5.64 43.87 4.26
1470 1588 1.949847 CTACTGGTGCTGCTACCGCT 61.950 60.000 13.83 6.36 43.87 5.52
1471 1589 1.519455 CTACTGGTGCTGCTACCGC 60.519 63.158 13.83 0.00 43.87 5.68
1472 1590 1.519455 GCTACTGGTGCTGCTACCG 60.519 63.158 13.83 11.48 43.87 4.02
1473 1591 1.153349 GGCTACTGGTGCTGCTACC 60.153 63.158 12.44 12.44 41.24 3.18
1474 1592 0.250513 AAGGCTACTGGTGCTGCTAC 59.749 55.000 0.00 0.00 0.00 3.58
1475 1593 0.537188 GAAGGCTACTGGTGCTGCTA 59.463 55.000 0.00 0.00 0.00 3.49
1476 1594 1.298014 GAAGGCTACTGGTGCTGCT 59.702 57.895 0.00 0.00 0.00 4.24
1477 1595 1.003355 TGAAGGCTACTGGTGCTGC 60.003 57.895 0.00 0.00 0.00 5.25
1478 1596 0.322975 AGTGAAGGCTACTGGTGCTG 59.677 55.000 0.00 0.00 0.00 4.41
1479 1597 1.002544 GAAGTGAAGGCTACTGGTGCT 59.997 52.381 0.00 0.00 0.00 4.40
1480 1598 1.270839 TGAAGTGAAGGCTACTGGTGC 60.271 52.381 0.00 0.00 0.00 5.01
1481 1599 2.037772 ACTGAAGTGAAGGCTACTGGTG 59.962 50.000 0.00 0.00 0.00 4.17
1482 1600 2.330216 ACTGAAGTGAAGGCTACTGGT 58.670 47.619 0.00 0.00 0.00 4.00
1483 1601 4.246458 GTTACTGAAGTGAAGGCTACTGG 58.754 47.826 0.00 0.00 0.00 4.00
1561 1706 4.824166 GCAATGCCGCTGCTCACG 62.824 66.667 0.70 0.00 38.71 4.35
1709 1880 1.215647 CTCCGAACAGGGGAAGTCG 59.784 63.158 0.00 0.00 46.06 4.18
1711 1882 1.192803 GGACTCCGAACAGGGGAAGT 61.193 60.000 0.00 0.00 46.06 3.01
1712 1883 1.192146 TGGACTCCGAACAGGGGAAG 61.192 60.000 0.00 0.00 46.06 3.46
1724 1895 1.153349 GCACGGAATCCTGGACTCC 60.153 63.158 14.17 14.17 0.00 3.85
1742 1913 0.673644 ACCGATTTGCCTCTCCGTTG 60.674 55.000 0.00 0.00 0.00 4.10
1789 1960 0.328258 GTATGGAAGGTGGTGTGGCT 59.672 55.000 0.00 0.00 0.00 4.75
1983 2183 1.097547 AATGGCGGCTCGAATGGAAG 61.098 55.000 11.43 0.00 0.00 3.46
2143 2343 0.394899 GAGAGGGAGGGCATTGTTGG 60.395 60.000 0.00 0.00 0.00 3.77
2146 2346 0.622665 CTTGAGAGGGAGGGCATTGT 59.377 55.000 0.00 0.00 0.00 2.71
2147 2347 0.106819 CCTTGAGAGGGAGGGCATTG 60.107 60.000 0.00 0.00 39.55 2.82
2148 2348 0.253347 TCCTTGAGAGGGAGGGCATT 60.253 55.000 0.00 0.00 43.72 3.56
2149 2349 0.029267 ATCCTTGAGAGGGAGGGCAT 60.029 55.000 0.00 0.00 43.72 4.40
2154 2354 1.918957 ACCCAAATCCTTGAGAGGGAG 59.081 52.381 0.00 0.00 43.72 4.30
2157 2357 3.439857 TTGACCCAAATCCTTGAGAGG 57.560 47.619 0.00 0.00 45.02 3.69
2205 2405 1.025812 AAGGCTATCGTCGTGAGAGG 58.974 55.000 0.00 0.00 46.73 3.69
2215 2415 4.096984 AGCTTGAAATCCAAAAGGCTATCG 59.903 41.667 0.00 0.00 33.65 2.92
2401 2610 3.001325 AGATGATGATGATGGGGAGGT 57.999 47.619 0.00 0.00 0.00 3.85
2421 2630 3.838244 AGTGAGAAACTACAGGCACAA 57.162 42.857 0.00 0.00 37.36 3.33
2432 2641 1.993370 CGTCCGATGGAAGTGAGAAAC 59.007 52.381 0.00 0.00 31.38 2.78
2603 2822 0.438830 GGCGTTGTGATTGAGACGTC 59.561 55.000 7.70 7.70 37.78 4.34
2661 2892 0.737219 AGCATGCGAAAAGATCCAGC 59.263 50.000 13.01 0.00 0.00 4.85
2927 3200 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2929 3202 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2930 3203 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2931 3204 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2932 3205 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2933 3206 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2934 3207 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2935 3208 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2936 3209 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2937 3210 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2938 3211 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2939 3212 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2940 3213 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2941 3214 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2942 3215 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2943 3216 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2944 3217 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2945 3218 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2946 3219 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2947 3220 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2948 3221 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2949 3222 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2950 3223 5.507149 CGAAGAGAGAGAGAGAGAGAGAGAG 60.507 52.000 0.00 0.00 0.00 3.20
2951 3224 4.339530 CGAAGAGAGAGAGAGAGAGAGAGA 59.660 50.000 0.00 0.00 0.00 3.10
2952 3225 4.500545 CCGAAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
2953 3226 3.384789 CCGAAGAGAGAGAGAGAGAGAGA 59.615 52.174 0.00 0.00 0.00 3.10
2954 3227 3.384789 TCCGAAGAGAGAGAGAGAGAGAG 59.615 52.174 0.00 0.00 0.00 3.20
2955 3228 3.132289 GTCCGAAGAGAGAGAGAGAGAGA 59.868 52.174 0.00 0.00 0.00 3.10
2956 3229 3.118775 TGTCCGAAGAGAGAGAGAGAGAG 60.119 52.174 0.00 0.00 0.00 3.20
2957 3230 2.835156 TGTCCGAAGAGAGAGAGAGAGA 59.165 50.000 0.00 0.00 0.00 3.10
2958 3231 3.260475 TGTCCGAAGAGAGAGAGAGAG 57.740 52.381 0.00 0.00 0.00 3.20
2959 3232 3.198853 TGATGTCCGAAGAGAGAGAGAGA 59.801 47.826 0.00 0.00 0.00 3.10
3103 3386 4.160439 CAGTCAGATAAGTAGGGTTGCTCA 59.840 45.833 0.00 0.00 0.00 4.26
3134 3417 5.711976 CCCATAAGGAACAACAGAAACAGAT 59.288 40.000 0.00 0.00 38.24 2.90
3160 3443 2.971915 CGCTTCAACGACCGATCTATAC 59.028 50.000 0.00 0.00 34.06 1.47
3163 3446 0.099968 CCGCTTCAACGACCGATCTA 59.900 55.000 0.00 0.00 34.06 1.98
3167 3453 1.011968 CATTCCGCTTCAACGACCGA 61.012 55.000 0.00 0.00 34.06 4.69
3208 3494 4.475028 GCGTGACACATCAAATTCATTCA 58.525 39.130 6.37 0.00 36.31 2.57
3236 3522 4.081087 TGGTACCTGTAATCTTGAGCTTCC 60.081 45.833 14.36 0.00 0.00 3.46
3274 3561 5.886960 ATTACTACAAGGCAAAGAAGCAG 57.113 39.130 0.00 0.00 35.83 4.24
3344 3631 7.617325 GCAAAGTTAAATTGCGAAAACTAGCTC 60.617 37.037 10.44 0.00 43.14 4.09
3497 3785 4.262765 CCAAGCACATAGATATCAGCAGGA 60.263 45.833 5.32 0.00 0.00 3.86
3518 3806 1.824230 GGCTTTGACAATGCATACCCA 59.176 47.619 22.98 0.00 33.57 4.51
3526 3814 1.734465 GTCTCGGAGGCTTTGACAATG 59.266 52.381 1.53 0.00 0.00 2.82
3541 3829 7.133891 ACAAAATTACAAGATGAAGGTCTCG 57.866 36.000 0.00 0.00 0.00 4.04
3545 3833 9.349713 TGAAGTACAAAATTACAAGATGAAGGT 57.650 29.630 0.00 0.00 0.00 3.50
3565 3853 5.975344 CGTCAAGAACACAGTACTTGAAGTA 59.025 40.000 14.49 0.00 46.98 2.24
3566 3854 4.804139 CGTCAAGAACACAGTACTTGAAGT 59.196 41.667 2.37 2.37 46.98 3.01
3567 3855 5.041287 TCGTCAAGAACACAGTACTTGAAG 58.959 41.667 14.49 15.51 46.98 3.02
3568 3856 5.001237 TCGTCAAGAACACAGTACTTGAA 57.999 39.130 14.49 3.23 46.98 2.69
3569 3857 4.337274 TCTCGTCAAGAACACAGTACTTGA 59.663 41.667 0.00 0.00 44.66 3.02
3570 3858 4.607955 TCTCGTCAAGAACACAGTACTTG 58.392 43.478 0.00 0.00 41.27 3.16
3581 3872 3.357203 AGGACATAGCTCTCGTCAAGAA 58.643 45.455 11.03 0.00 32.23 2.52
3588 3879 6.740110 ACATAGTTAAAGGACATAGCTCTCG 58.260 40.000 0.00 0.00 0.00 4.04
3589 3880 8.950208 AAACATAGTTAAAGGACATAGCTCTC 57.050 34.615 0.00 0.00 0.00 3.20
3590 3881 9.740710 AAAAACATAGTTAAAGGACATAGCTCT 57.259 29.630 0.00 0.00 0.00 4.09
3591 3882 9.989869 GAAAAACATAGTTAAAGGACATAGCTC 57.010 33.333 0.00 0.00 0.00 4.09
3592 3883 9.515226 TGAAAAACATAGTTAAAGGACATAGCT 57.485 29.630 0.00 0.00 0.00 3.32
3611 3902 9.771915 TTGAAATCTGCAAAAAGATTGAAAAAC 57.228 25.926 0.15 0.00 44.35 2.43
3613 3904 9.381033 TCTTGAAATCTGCAAAAAGATTGAAAA 57.619 25.926 0.15 0.00 44.35 2.29
3622 3913 8.397148 GGAACAATTTCTTGAAATCTGCAAAAA 58.603 29.630 8.77 0.00 36.20 1.94
3623 3914 7.769970 AGGAACAATTTCTTGAAATCTGCAAAA 59.230 29.630 8.77 0.00 36.20 2.44
3741 4032 1.910722 CCACCATGACTGCTAGGCT 59.089 57.895 0.00 0.00 0.00 4.58
3859 4150 3.798202 ACTAAGGTTCTGGAATGATCGC 58.202 45.455 0.00 0.00 0.00 4.58
3971 4262 4.764679 TTCCATCAAAATCACTTGGTCG 57.235 40.909 0.00 0.00 0.00 4.79
4148 4439 8.226448 GCATCATCATGAAGTTATTAGTACAGC 58.774 37.037 0.00 0.00 30.57 4.40
4149 4440 9.486497 AGCATCATCATGAAGTTATTAGTACAG 57.514 33.333 0.00 0.00 30.57 2.74
4207 4611 1.323412 ACAATACCTGGCGCAAACAA 58.677 45.000 10.83 0.00 0.00 2.83
4215 4619 1.337728 GGCAACCAAACAATACCTGGC 60.338 52.381 0.00 0.00 33.19 4.85
4319 4731 8.239478 AGATAACCCATTAATCCTCTACCTACA 58.761 37.037 0.00 0.00 0.00 2.74
4360 4779 4.553938 GCAACTTGTACAACGTACAGCATT 60.554 41.667 3.59 1.82 0.00 3.56
4404 4823 6.095440 AGCATAGAAACAATGAACCATACACC 59.905 38.462 0.00 0.00 0.00 4.16
4405 4824 6.968904 CAGCATAGAAACAATGAACCATACAC 59.031 38.462 0.00 0.00 0.00 2.90
4538 4967 3.065925 GCAATTCATCTCCCTCCTTTTCG 59.934 47.826 0.00 0.00 0.00 3.46
4677 5106 8.893727 GCTTCCACATTACTATGTTGAATAAGT 58.106 33.333 5.57 0.00 42.28 2.24
4736 5166 4.215399 GCCATAAGATACGGCTGCAATTAA 59.785 41.667 0.50 0.00 42.78 1.40
4839 5269 7.708752 GTGTAAATTACCTGATCTCTCTCCAAG 59.291 40.741 0.18 0.00 0.00 3.61
4872 5302 5.110940 TGAAATTAACCTTGCCGTGTAAC 57.889 39.130 0.00 0.00 0.00 2.50
4965 5395 0.036388 AAACATGTCCGCATCTCCGT 60.036 50.000 0.00 0.00 31.99 4.69
5152 5582 6.152932 TCGTCAGTAAGTTCCTTACAACTT 57.847 37.500 14.60 4.16 46.01 2.66
5176 5606 6.257849 CACCTTTGGTAAGAAAAAGAAAAGCC 59.742 38.462 0.00 0.00 35.79 4.35
5322 5752 4.043596 AGCCCATATTTCTTCTCCTCTGT 58.956 43.478 0.00 0.00 0.00 3.41
5418 5848 8.713271 GCAATACTTACTTATAGCATGGAGAAC 58.287 37.037 0.00 0.00 0.00 3.01
5445 5882 3.426525 GTCAGCTTGCACATACAAAAAGC 59.573 43.478 0.00 0.00 42.78 3.51
5542 5990 1.681327 GTGAGGACCGGTCAGCCTA 60.681 63.158 34.40 13.78 30.70 3.93
5633 6084 5.574055 TCTCGGCAGTTACTAAAATGTTACG 59.426 40.000 0.00 0.00 33.27 3.18
5634 6085 6.956299 TCTCGGCAGTTACTAAAATGTTAC 57.044 37.500 0.00 0.00 33.27 2.50
5635 6086 7.101054 ACATCTCGGCAGTTACTAAAATGTTA 58.899 34.615 0.00 0.00 33.27 2.41
5679 6130 2.135189 TGCAGCTATAATGTTCCCCCT 58.865 47.619 0.00 0.00 0.00 4.79
5680 6131 2.656947 TGCAGCTATAATGTTCCCCC 57.343 50.000 0.00 0.00 0.00 5.40
5691 6142 7.112779 ACCTCTATGTTAGTTTTTGCAGCTAT 58.887 34.615 0.00 0.00 0.00 2.97
5703 6154 9.159364 GAAATCGGTTTTTACCTCTATGTTAGT 57.841 33.333 0.00 0.00 0.00 2.24
5827 6284 0.533308 AACAAAGCCGTTCTACGCCA 60.533 50.000 0.00 0.00 40.91 5.69
5830 6287 2.222508 CGATGAACAAAGCCGTTCTACG 60.223 50.000 11.27 11.74 44.59 3.51
5832 6289 2.028839 TCCGATGAACAAAGCCGTTCTA 60.029 45.455 11.27 1.29 44.59 2.10
5833 6290 1.156736 CCGATGAACAAAGCCGTTCT 58.843 50.000 11.27 0.06 44.59 3.01
5901 6358 1.076705 GGGGAATGGACTGGAAGGC 60.077 63.158 0.00 0.00 46.31 4.35
5902 6359 1.615262 GGGGGAATGGACTGGAAGG 59.385 63.158 0.00 0.00 39.30 3.46
5982 6440 4.199002 ACAGGGTTTCCAAAGGAGAAAT 57.801 40.909 0.00 0.00 35.77 2.17
6104 6566 9.471084 CATCCGGAAAAACTAACAACTAATTTT 57.529 29.630 9.01 0.00 0.00 1.82
6269 6740 3.581755 CATTTCATGGCCACAGAAACAG 58.418 45.455 28.03 21.52 34.47 3.16
6361 6832 0.461516 CGATGATGAGGCACTGCACT 60.462 55.000 2.82 0.00 41.55 4.40
6379 6850 6.268797 TCGCATTAGCATAAAAGAACTACG 57.731 37.500 0.00 0.00 42.27 3.51
6399 6870 1.165270 ACCACCAGCTTATGTTTCGC 58.835 50.000 0.00 0.00 0.00 4.70
6400 6871 5.276678 CGTATAACCACCAGCTTATGTTTCG 60.277 44.000 0.00 0.00 0.00 3.46
6415 6886 6.147492 ACAAAATCGCAACTTACGTATAACCA 59.853 34.615 0.00 0.00 0.00 3.67
6417 6888 8.586273 TCTACAAAATCGCAACTTACGTATAAC 58.414 33.333 0.00 0.00 0.00 1.89
6424 6895 8.950403 AGAAAATCTACAAAATCGCAACTTAC 57.050 30.769 0.00 0.00 0.00 2.34
6426 6897 8.237267 CCTAGAAAATCTACAAAATCGCAACTT 58.763 33.333 0.00 0.00 0.00 2.66
6427 6898 7.626452 GCCTAGAAAATCTACAAAATCGCAACT 60.626 37.037 0.00 0.00 0.00 3.16
6428 6899 6.469275 GCCTAGAAAATCTACAAAATCGCAAC 59.531 38.462 0.00 0.00 0.00 4.17
6429 6900 6.404293 GGCCTAGAAAATCTACAAAATCGCAA 60.404 38.462 0.00 0.00 0.00 4.85
6430 6901 5.065988 GGCCTAGAAAATCTACAAAATCGCA 59.934 40.000 0.00 0.00 0.00 5.10
6432 6903 6.677781 TGGCCTAGAAAATCTACAAAATCG 57.322 37.500 3.32 0.00 0.00 3.34
6435 6906 9.920946 ATCTAATGGCCTAGAAAATCTACAAAA 57.079 29.630 3.32 0.00 31.76 2.44
6475 6953 3.264450 GGAGGAAGAAGAAAGATGGACCA 59.736 47.826 0.00 0.00 0.00 4.02
6508 6986 4.321156 CGAAATGAGAAATGGTTGGAGCAA 60.321 41.667 0.00 0.00 0.00 3.91
6522 7000 5.163893 GGTTAGTCGATTTTGCGAAATGAGA 60.164 40.000 16.80 12.30 42.55 3.27
6526 7004 3.754323 TGGGTTAGTCGATTTTGCGAAAT 59.246 39.130 11.86 11.86 42.55 2.17
6529 7007 2.459060 TGGGTTAGTCGATTTTGCGA 57.541 45.000 0.00 0.00 38.07 5.10
6583 7061 9.258826 CACATGATTCAGTTTATTTTTCCACAA 57.741 29.630 0.00 0.00 0.00 3.33
6586 7064 9.695526 CTTCACATGATTCAGTTTATTTTTCCA 57.304 29.630 0.00 0.00 0.00 3.53
6587 7065 9.696917 ACTTCACATGATTCAGTTTATTTTTCC 57.303 29.630 0.00 0.00 0.00 3.13
6595 7073 7.642669 CACAGTAACTTCACATGATTCAGTTT 58.357 34.615 0.00 0.00 0.00 2.66
6599 7077 5.308014 AGCACAGTAACTTCACATGATTCA 58.692 37.500 0.00 0.00 0.00 2.57
6607 7085 4.686554 CCTGACTAAGCACAGTAACTTCAC 59.313 45.833 0.00 0.00 32.93 3.18
6658 7136 5.104776 TGCTCCACTTGATTCAGCTAATAGT 60.105 40.000 0.00 0.00 0.00 2.12
6659 7137 5.363101 TGCTCCACTTGATTCAGCTAATAG 58.637 41.667 0.00 0.00 0.00 1.73
6703 7181 0.388649 AGACTGCGGAGTAAGCAACG 60.389 55.000 10.47 0.00 44.67 4.10
6711 7189 1.245732 AAGAACGTAGACTGCGGAGT 58.754 50.000 10.23 10.23 33.98 3.85
6715 7193 1.136336 GCCAAAAGAACGTAGACTGCG 60.136 52.381 11.65 11.65 0.00 5.18
6729 7207 7.523293 TCTTTCATTCATCAACTAGCCAAAA 57.477 32.000 0.00 0.00 0.00 2.44
6867 7345 3.012518 CAGAACCAGCCATTAACTCCAG 58.987 50.000 0.00 0.00 0.00 3.86
6880 7358 2.158608 AGGGTCAAAGAACCAGAACCAG 60.159 50.000 3.63 0.00 42.91 4.00
6881 7359 1.850345 AGGGTCAAAGAACCAGAACCA 59.150 47.619 3.63 0.00 42.91 3.67
6882 7360 2.623416 CAAGGGTCAAAGAACCAGAACC 59.377 50.000 3.63 0.00 42.91 3.62
6883 7361 3.315470 GTCAAGGGTCAAAGAACCAGAAC 59.685 47.826 3.63 0.00 42.91 3.01
6884 7362 3.202151 AGTCAAGGGTCAAAGAACCAGAA 59.798 43.478 3.63 0.00 42.91 3.02
6885 7363 2.777692 AGTCAAGGGTCAAAGAACCAGA 59.222 45.455 3.63 0.00 42.91 3.86
6963 7442 4.280174 TCCGTAACTAACAGCTTTCAGTCT 59.720 41.667 0.00 0.00 0.00 3.24
6964 7443 4.385146 GTCCGTAACTAACAGCTTTCAGTC 59.615 45.833 0.00 0.00 0.00 3.51
6987 7466 2.477825 CCATCTCCGATGTACTGCAAG 58.522 52.381 0.00 0.00 42.29 4.01
6997 7476 2.733956 GCTAGATCTCCCATCTCCGAT 58.266 52.381 0.00 0.00 0.00 4.18
6998 7477 1.611936 CGCTAGATCTCCCATCTCCGA 60.612 57.143 0.00 0.00 0.00 4.55
7000 7479 1.181786 CCGCTAGATCTCCCATCTCC 58.818 60.000 0.00 0.00 0.00 3.71
7021 7500 3.129462 GCTGCCCTTTATCTTTCAACCTC 59.871 47.826 0.00 0.00 0.00 3.85
7050 7529 6.824305 ATCTTTTACTTACTGCTGCACAAT 57.176 33.333 0.00 0.00 0.00 2.71
7051 7530 7.737972 TTATCTTTTACTTACTGCTGCACAA 57.262 32.000 0.00 0.00 0.00 3.33
7114 7595 4.401925 ACAGTCAAAAGAAGAATCAGGGG 58.598 43.478 0.00 0.00 0.00 4.79
7196 7677 4.096382 GTGTATATTCTGGCAACCTGTTGG 59.904 45.833 11.66 0.00 40.74 3.77
7202 7683 4.051922 CGAGAGTGTATATTCTGGCAACC 58.948 47.826 0.00 0.00 0.00 3.77
7221 7702 6.477669 AATGCATGCTACTTATGAATCGAG 57.522 37.500 20.33 0.00 0.00 4.04
7224 7705 8.180267 GTGGATAATGCATGCTACTTATGAATC 58.820 37.037 20.33 9.85 0.00 2.52
7287 8053 4.109675 ACCCTGGTACATGCGGCC 62.110 66.667 0.00 0.00 38.20 6.13
7311 8077 4.778427 GCCCCATTTATCCTACTACTAGCT 59.222 45.833 0.00 0.00 0.00 3.32
7392 8162 0.742281 ATGACATCACCGAGCACAGC 60.742 55.000 0.00 0.00 0.00 4.40
7410 8180 1.551560 CCATATTGCCATGAGCCCCAT 60.552 52.381 0.00 0.00 42.71 4.00
7411 8181 0.178955 CCATATTGCCATGAGCCCCA 60.179 55.000 0.00 0.00 42.71 4.96
7442 8212 4.087892 GGCAGCGGCAGGAAGAGA 62.088 66.667 11.88 0.00 43.71 3.10
7537 8313 2.818132 CCGCTAGCTTCAGGGAGG 59.182 66.667 13.93 0.00 0.00 4.30
7538 8314 2.037620 ATGCCGCTAGCTTCAGGGAG 62.038 60.000 13.93 0.00 44.23 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.