Multiple sequence alignment - TraesCS5D01G438300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G438300 chr5D 100.000 3338 0 0 1 3338 491790967 491794304 0.000000e+00 6165.0
1 TraesCS5D01G438300 chr5A 87.882 2129 157 49 557 2632 614363165 614365245 0.000000e+00 2409.0
2 TraesCS5D01G438300 chr5A 90.592 287 22 3 2783 3068 614365280 614365562 3.140000e-100 375.0
3 TraesCS5D01G438300 chr5A 83.267 251 7 15 92 338 614362674 614362893 7.300000e-47 198.0
4 TraesCS5D01G438300 chr5A 97.959 49 1 0 1 49 614362621 614362669 5.930000e-13 86.1
5 TraesCS5D01G438300 chr5B 93.978 1428 61 10 1299 2712 606849738 606851154 0.000000e+00 2137.0
6 TraesCS5D01G438300 chr5B 96.491 741 20 3 575 1312 606848985 606849722 0.000000e+00 1219.0
7 TraesCS5D01G438300 chr5B 87.582 459 25 13 1 447 606846781 606847219 1.380000e-138 503.0
8 TraesCS5D01G438300 chr5B 94.215 121 7 0 457 577 606848518 606848638 5.690000e-43 185.0
9 TraesCS5D01G438300 chr5B 87.500 144 15 2 2724 2866 606852182 606852323 2.660000e-36 163.0
10 TraesCS5D01G438300 chr1B 87.396 960 101 14 1400 2348 100052674 100053624 0.000000e+00 1085.0
11 TraesCS5D01G438300 chr1B 82.282 666 73 21 685 1331 100044900 100045539 4.900000e-148 534.0
12 TraesCS5D01G438300 chr1B 93.182 132 6 2 208 338 100044359 100044230 1.220000e-44 191.0
13 TraesCS5D01G438300 chr1D 84.940 1089 137 21 1406 2476 62794176 62795255 0.000000e+00 1077.0
14 TraesCS5D01G438300 chr1D 83.936 747 70 24 682 1407 62793297 62794014 0.000000e+00 669.0
15 TraesCS5D01G438300 chr1D 89.053 338 23 10 1 337 62792509 62792833 1.110000e-109 407.0
16 TraesCS5D01G438300 chr1A 85.639 954 118 17 1406 2348 60911109 60912054 0.000000e+00 985.0
17 TraesCS5D01G438300 chr1A 82.704 821 77 35 613 1417 60910180 60910951 0.000000e+00 669.0
18 TraesCS5D01G438300 chr1A 86.538 260 21 9 77 335 60875168 60875414 1.180000e-69 274.0
19 TraesCS5D01G438300 chr1A 80.226 354 41 14 588 929 60875823 60876159 4.300000e-59 239.0
20 TraesCS5D01G438300 chr1A 87.432 183 23 0 412 594 60875574 60875756 9.380000e-51 211.0
21 TraesCS5D01G438300 chr1A 100.000 28 0 0 2687 2714 516780573 516780546 6.000000e-03 52.8
22 TraesCS5D01G438300 chrUn 84.369 499 59 13 1400 1887 287999265 287999755 3.900000e-129 472.0
23 TraesCS5D01G438300 chr6B 100.000 30 0 0 2699 2728 648114435 648114406 4.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G438300 chr5D 491790967 491794304 3337 False 6165.000000 6165 100.000000 1 3338 1 chr5D.!!$F1 3337
1 TraesCS5D01G438300 chr5A 614362621 614365562 2941 False 767.025000 2409 89.925000 1 3068 4 chr5A.!!$F1 3067
2 TraesCS5D01G438300 chr5B 606846781 606852323 5542 False 841.400000 2137 91.953200 1 2866 5 chr5B.!!$F1 2865
3 TraesCS5D01G438300 chr1B 100052674 100053624 950 False 1085.000000 1085 87.396000 1400 2348 1 chr1B.!!$F2 948
4 TraesCS5D01G438300 chr1B 100044900 100045539 639 False 534.000000 534 82.282000 685 1331 1 chr1B.!!$F1 646
5 TraesCS5D01G438300 chr1D 62792509 62795255 2746 False 717.666667 1077 85.976333 1 2476 3 chr1D.!!$F1 2475
6 TraesCS5D01G438300 chr1A 60910180 60912054 1874 False 827.000000 985 84.171500 613 2348 2 chr1A.!!$F2 1735
7 TraesCS5D01G438300 chr1A 60875168 60876159 991 False 241.333333 274 84.732000 77 929 3 chr1A.!!$F1 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 140 1.135199 GCACAATCAACTCCTGCATGG 60.135 52.381 0.00 0.0 37.10 3.66 F
149 167 1.226491 CAGGCAGCAGCGCAATTAC 60.226 57.895 11.47 0.0 43.41 1.89 F
1575 3650 1.264749 TACAGGGTTGCGATGCCTCT 61.265 55.000 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 3650 0.616395 TGGTCGGGTCCAGCAGAATA 60.616 55.000 0.00 0.0 33.19 1.75 R
1782 3857 1.079405 GATTGACCGGAAGCCGTCA 60.079 57.895 9.46 0.0 46.80 4.35 R
3256 6377 0.033601 TGACCCTGCAACCAACAAGT 60.034 50.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.270893 TGTTAGCACAATTCCGCTCTATA 57.729 39.130 1.43 0.00 39.70 1.31
48 49 5.666462 TGTTAGCACAATTCCGCTCTATAA 58.334 37.500 1.43 0.00 39.70 0.98
49 50 6.288294 TGTTAGCACAATTCCGCTCTATAAT 58.712 36.000 1.43 0.00 39.70 1.28
50 51 6.423905 TGTTAGCACAATTCCGCTCTATAATC 59.576 38.462 1.43 0.00 39.70 1.75
51 52 5.220710 AGCACAATTCCGCTCTATAATCT 57.779 39.130 0.00 0.00 31.16 2.40
52 53 6.346477 AGCACAATTCCGCTCTATAATCTA 57.654 37.500 0.00 0.00 31.16 1.98
53 54 6.940739 AGCACAATTCCGCTCTATAATCTAT 58.059 36.000 0.00 0.00 31.16 1.98
54 55 8.067751 AGCACAATTCCGCTCTATAATCTATA 57.932 34.615 0.00 0.00 31.16 1.31
55 56 8.700051 AGCACAATTCCGCTCTATAATCTATAT 58.300 33.333 0.00 0.00 31.16 0.86
56 57 9.967346 GCACAATTCCGCTCTATAATCTATATA 57.033 33.333 0.00 0.00 0.00 0.86
89 102 5.595885 CAATCTGTACATCAGGTCTACCAG 58.404 45.833 0.00 0.00 43.76 4.00
123 140 1.135199 GCACAATCAACTCCTGCATGG 60.135 52.381 0.00 0.00 37.10 3.66
147 165 4.430765 GCAGGCAGCAGCGCAATT 62.431 61.111 11.47 0.00 44.79 2.32
148 166 3.055080 GCAGGCAGCAGCGCAATTA 62.055 57.895 11.47 0.00 44.79 1.40
149 167 1.226491 CAGGCAGCAGCGCAATTAC 60.226 57.895 11.47 0.00 43.41 1.89
150 168 1.675310 AGGCAGCAGCGCAATTACA 60.675 52.632 11.47 0.00 43.41 2.41
195 213 4.681025 ACAAAATCATGTTTAGTGCGCTTG 59.319 37.500 9.73 1.50 0.00 4.01
211 229 2.610833 CGCTTGATGCTCAGCTTCAATA 59.389 45.455 24.09 7.45 46.28 1.90
236 254 5.497464 TGAACCTGGTTCATCTGACATAA 57.503 39.130 32.67 10.88 45.88 1.90
386 451 3.560636 AACACCTTGATTATCGGGAGG 57.439 47.619 10.14 8.67 0.00 4.30
410 482 3.730761 CCACAGCAAGCGCCTGTC 61.731 66.667 13.89 3.86 39.83 3.51
454 1854 4.038282 TGATTATCATCTGCATGCCAAACC 59.962 41.667 16.68 0.00 0.00 3.27
549 1949 6.294731 GGTCATCAACAAAGCTGGAATTAACT 60.295 38.462 0.00 0.00 0.00 2.24
604 2353 2.102578 GCCAACATAGTTCAAGCCCAT 58.897 47.619 0.00 0.00 0.00 4.00
610 2359 3.264193 ACATAGTTCAAGCCCATGAGTCA 59.736 43.478 0.00 0.00 0.00 3.41
611 2360 2.957402 AGTTCAAGCCCATGAGTCAA 57.043 45.000 0.00 0.00 0.00 3.18
622 2374 4.142093 GCCCATGAGTCAAAATATGCTGTT 60.142 41.667 0.00 0.00 0.00 3.16
832 2621 5.120674 CAGACGAATTCTTTGTATGCACTGA 59.879 40.000 3.52 0.00 30.37 3.41
833 2622 5.700832 AGACGAATTCTTTGTATGCACTGAA 59.299 36.000 3.52 1.39 0.00 3.02
834 2623 5.689819 ACGAATTCTTTGTATGCACTGAAC 58.310 37.500 3.52 0.00 0.00 3.18
835 2624 5.470098 ACGAATTCTTTGTATGCACTGAACT 59.530 36.000 3.52 0.00 0.00 3.01
836 2625 6.649141 ACGAATTCTTTGTATGCACTGAACTA 59.351 34.615 3.52 0.00 0.00 2.24
889 2701 1.965754 GCTCGTCCTCATGGCCTTCT 61.966 60.000 3.32 0.00 0.00 2.85
982 2796 4.049546 AGACACACGCAAACAGTAGTAA 57.950 40.909 0.00 0.00 0.00 2.24
994 2808 7.518370 CGCAAACAGTAGTAAGTGAACAAGAAT 60.518 37.037 0.00 0.00 0.00 2.40
995 2809 8.129211 GCAAACAGTAGTAAGTGAACAAGAATT 58.871 33.333 0.00 0.00 0.00 2.17
1077 2909 4.794439 TCTGTGTCGATGGCCGCG 62.794 66.667 11.22 11.22 38.37 6.46
1342 3212 7.311092 TCCATATAAACATACTACCCCTGTG 57.689 40.000 0.00 0.00 0.00 3.66
1445 3504 8.528044 AACTAAAACTGTCAAGGTGGAAATAA 57.472 30.769 0.00 0.00 0.00 1.40
1575 3650 1.264749 TACAGGGTTGCGATGCCTCT 61.265 55.000 0.00 0.00 0.00 3.69
1827 3902 1.452108 GGTCTTCCAAGGCATCCCG 60.452 63.158 0.00 0.00 35.76 5.14
1887 3962 2.192861 CACCAAAGGCCTCAACGCA 61.193 57.895 5.23 0.00 0.00 5.24
2197 4273 2.961893 AAGACGGCGGCCATGGTAA 61.962 57.895 20.71 0.00 0.00 2.85
2223 4299 4.849310 GCCGCTAACCCCATCGCA 62.849 66.667 0.00 0.00 0.00 5.10
2241 4317 3.645660 TGGATGGCCAGGTTCGCA 61.646 61.111 13.05 1.79 39.92 5.10
2396 4487 2.618709 GCAGCTACAACTTGTGGACTTT 59.381 45.455 9.34 0.00 29.57 2.66
2403 4494 3.056891 ACAACTTGTGGACTTTGTTGGTG 60.057 43.478 0.00 0.00 41.32 4.17
2487 4578 9.626045 AAATTAGCTATGTACAAGTTGCTTTTC 57.374 29.630 16.35 0.00 32.72 2.29
2548 4640 5.290643 CCTGAAGATCGCTCTACTTTTCTTG 59.709 44.000 0.00 0.00 0.00 3.02
2553 4645 4.465632 TCGCTCTACTTTTCTTGCCATA 57.534 40.909 0.00 0.00 0.00 2.74
2609 4712 1.066430 TCATCGGTCCAAAGTGGCTAC 60.066 52.381 0.00 0.00 37.47 3.58
2618 4721 2.613977 CCAAAGTGGCTACTGAGTCAGG 60.614 54.545 23.79 8.46 38.20 3.86
2632 4735 5.186021 ACTGAGTCAGGTACCAACTAGAATG 59.814 44.000 23.79 0.46 35.51 2.67
2639 4742 6.152323 TCAGGTACCAACTAGAATGTGTACTC 59.848 42.308 15.94 0.00 31.17 2.59
2640 4743 6.153000 CAGGTACCAACTAGAATGTGTACTCT 59.847 42.308 15.94 14.86 31.17 3.24
2641 4744 6.724905 AGGTACCAACTAGAATGTGTACTCTT 59.275 38.462 15.94 0.00 31.17 2.85
2642 4745 7.034397 GGTACCAACTAGAATGTGTACTCTTC 58.966 42.308 7.15 0.00 31.17 2.87
2643 4746 5.710984 ACCAACTAGAATGTGTACTCTTCG 58.289 41.667 0.00 0.00 0.00 3.79
2644 4747 5.243283 ACCAACTAGAATGTGTACTCTTCGT 59.757 40.000 0.00 0.00 0.00 3.85
2645 4748 6.432162 ACCAACTAGAATGTGTACTCTTCGTA 59.568 38.462 0.00 0.00 0.00 3.43
2667 4770 2.287915 GGCGCAATCGACATGATAAAGT 59.712 45.455 10.83 0.00 44.84 2.66
2682 4785 6.926630 TGATAAAGTGGGGCTAAACAATTT 57.073 33.333 0.00 0.00 38.30 1.82
2692 4795 5.768662 GGGGCTAAACAATTTAGATACTCCC 59.231 44.000 11.61 10.87 44.19 4.30
2694 4797 7.061054 GGGCTAAACAATTTAGATACTCCCTT 58.939 38.462 11.61 0.00 44.19 3.95
2696 4799 7.773690 GGCTAAACAATTTAGATACTCCCTTCA 59.226 37.037 11.61 0.00 44.19 3.02
2712 4815 7.840931 ACTCCCTTCAATCCAAATTAATTGAC 58.159 34.615 0.39 0.00 40.58 3.18
2713 4816 7.454380 ACTCCCTTCAATCCAAATTAATTGACA 59.546 33.333 0.39 0.00 40.58 3.58
2716 4819 8.885722 CCCTTCAATCCAAATTAATTGACATTG 58.114 33.333 0.39 9.85 40.58 2.82
2717 4820 9.439500 CCTTCAATCCAAATTAATTGACATTGT 57.561 29.630 17.48 0.00 40.58 2.71
2753 5872 9.189723 ACTCTAGTAAAAAGTTGTACTAAAGCG 57.810 33.333 2.80 0.00 33.51 4.68
2755 5874 8.143835 TCTAGTAAAAAGTTGTACTAAAGCGGT 58.856 33.333 3.34 0.00 33.51 5.68
2762 5881 5.786311 AGTTGTACTAAAGCGGTGTCAATA 58.214 37.500 0.00 0.00 0.00 1.90
2764 5883 6.877322 AGTTGTACTAAAGCGGTGTCAATAAT 59.123 34.615 0.00 0.00 0.00 1.28
2767 5886 8.774890 TGTACTAAAGCGGTGTCAATAATTTA 57.225 30.769 0.00 0.00 0.00 1.40
2769 5888 9.090692 GTACTAAAGCGGTGTCAATAATTTAGA 57.909 33.333 8.36 0.00 34.46 2.10
2770 5889 8.732746 ACTAAAGCGGTGTCAATAATTTAGAT 57.267 30.769 8.36 0.00 34.46 1.98
2771 5890 8.827677 ACTAAAGCGGTGTCAATAATTTAGATC 58.172 33.333 8.36 0.00 34.46 2.75
2772 5891 7.624360 AAAGCGGTGTCAATAATTTAGATCA 57.376 32.000 0.00 0.00 0.00 2.92
2773 5892 7.624360 AAGCGGTGTCAATAATTTAGATCAA 57.376 32.000 0.00 0.00 0.00 2.57
2775 5894 7.697691 AGCGGTGTCAATAATTTAGATCAAAG 58.302 34.615 0.00 0.00 0.00 2.77
2776 5895 7.336931 AGCGGTGTCAATAATTTAGATCAAAGT 59.663 33.333 0.00 0.00 0.00 2.66
2844 5964 5.620206 TGTGGAGAGCTAAACAATTGAAGA 58.380 37.500 13.59 0.00 0.00 2.87
2858 5978 3.446310 TTGAAGAAGTACAGACGCACA 57.554 42.857 0.00 0.00 0.00 4.57
2867 5987 1.512926 ACAGACGCACAAATGGTCTC 58.487 50.000 0.00 0.00 35.44 3.36
2873 5993 1.267806 CGCACAAATGGTCTCTGCTTT 59.732 47.619 0.00 0.00 0.00 3.51
2882 6003 1.677217 GGTCTCTGCTTTAGCTGGGTG 60.677 57.143 8.14 1.29 40.74 4.61
2888 6009 4.151883 TCTGCTTTAGCTGGGTGAAAAAT 58.848 39.130 0.00 0.00 42.66 1.82
2929 6050 1.461127 GCTAAGCAAGGACAAGACACG 59.539 52.381 0.00 0.00 0.00 4.49
2951 6072 2.443887 GCAAACACATGCAGTTGGAT 57.556 45.000 9.55 0.00 45.70 3.41
2971 6092 1.131638 TGCAAACTGAGGAGAGTGGT 58.868 50.000 0.00 0.00 0.00 4.16
2975 6096 4.530553 TGCAAACTGAGGAGAGTGGTATTA 59.469 41.667 0.00 0.00 0.00 0.98
2979 6100 7.560368 CAAACTGAGGAGAGTGGTATTATTCT 58.440 38.462 0.00 0.00 0.00 2.40
2985 6106 6.529220 AGGAGAGTGGTATTATTCTTGATGC 58.471 40.000 0.00 0.00 0.00 3.91
3026 6147 4.453819 CAGTAAAGGAAGCAGTGGAAGAAG 59.546 45.833 0.00 0.00 0.00 2.85
3028 6149 3.864789 AAGGAAGCAGTGGAAGAAGAA 57.135 42.857 0.00 0.00 0.00 2.52
3029 6150 3.133141 AGGAAGCAGTGGAAGAAGAAC 57.867 47.619 0.00 0.00 0.00 3.01
3030 6151 2.708325 AGGAAGCAGTGGAAGAAGAACT 59.292 45.455 0.00 0.00 0.00 3.01
3046 6167 2.157738 GAACTGCTTCAGCCAGTCAAT 58.842 47.619 0.00 0.00 41.18 2.57
3048 6169 0.170561 CTGCTTCAGCCAGTCAATGC 59.829 55.000 0.00 0.00 41.18 3.56
3056 6177 1.364626 GCCAGTCAATGCTCTGTCGG 61.365 60.000 5.07 0.00 0.00 4.79
3068 6189 0.904649 TCTGTCGGGTGCAGATCATT 59.095 50.000 0.00 0.00 37.98 2.57
3069 6190 1.134699 TCTGTCGGGTGCAGATCATTC 60.135 52.381 0.00 0.00 37.98 2.67
3070 6191 0.612744 TGTCGGGTGCAGATCATTCA 59.387 50.000 0.00 0.00 0.00 2.57
3071 6192 1.003003 TGTCGGGTGCAGATCATTCAA 59.997 47.619 0.00 0.00 0.00 2.69
3072 6193 1.667724 GTCGGGTGCAGATCATTCAAG 59.332 52.381 0.00 0.00 0.00 3.02
3073 6194 1.554617 TCGGGTGCAGATCATTCAAGA 59.445 47.619 0.00 0.00 0.00 3.02
3074 6195 2.027285 TCGGGTGCAGATCATTCAAGAA 60.027 45.455 0.00 0.00 0.00 2.52
3075 6196 2.096496 CGGGTGCAGATCATTCAAGAAC 59.904 50.000 0.00 0.00 0.00 3.01
3076 6197 3.350833 GGGTGCAGATCATTCAAGAACT 58.649 45.455 0.00 0.00 0.00 3.01
3077 6198 4.517285 GGGTGCAGATCATTCAAGAACTA 58.483 43.478 0.00 0.00 0.00 2.24
3078 6199 5.128919 GGGTGCAGATCATTCAAGAACTAT 58.871 41.667 0.00 0.00 0.00 2.12
3079 6200 5.591877 GGGTGCAGATCATTCAAGAACTATT 59.408 40.000 0.00 0.00 0.00 1.73
3080 6201 6.238593 GGGTGCAGATCATTCAAGAACTATTC 60.239 42.308 0.00 0.00 0.00 1.75
3081 6202 6.541641 GGTGCAGATCATTCAAGAACTATTCT 59.458 38.462 0.00 0.00 43.15 2.40
3082 6203 7.712639 GGTGCAGATCATTCAAGAACTATTCTA 59.287 37.037 0.00 0.00 39.61 2.10
3083 6204 9.270640 GTGCAGATCATTCAAGAACTATTCTAT 57.729 33.333 0.00 0.00 39.61 1.98
3084 6205 9.842775 TGCAGATCATTCAAGAACTATTCTATT 57.157 29.630 0.00 0.00 39.61 1.73
3110 6231 7.388460 AGAGCTCTTATTGAAAATCAAGTGG 57.612 36.000 11.45 0.00 40.05 4.00
3111 6232 6.944862 AGAGCTCTTATTGAAAATCAAGTGGT 59.055 34.615 11.45 0.00 40.05 4.16
3112 6233 6.917533 AGCTCTTATTGAAAATCAAGTGGTG 58.082 36.000 0.00 0.00 40.05 4.17
3113 6234 6.491403 AGCTCTTATTGAAAATCAAGTGGTGT 59.509 34.615 0.00 0.00 40.05 4.16
3114 6235 7.014615 AGCTCTTATTGAAAATCAAGTGGTGTT 59.985 33.333 0.00 0.00 40.05 3.32
3115 6236 7.115378 GCTCTTATTGAAAATCAAGTGGTGTTG 59.885 37.037 0.00 0.00 40.05 3.33
3116 6237 8.006298 TCTTATTGAAAATCAAGTGGTGTTGT 57.994 30.769 0.00 0.00 40.05 3.32
3117 6238 8.474025 TCTTATTGAAAATCAAGTGGTGTTGTT 58.526 29.630 0.00 0.00 40.05 2.83
3118 6239 9.743057 CTTATTGAAAATCAAGTGGTGTTGTTA 57.257 29.630 0.00 0.00 40.05 2.41
3121 6242 8.417780 TTGAAAATCAAGTGGTGTTGTTATTG 57.582 30.769 0.00 0.00 31.83 1.90
3122 6243 7.551585 TGAAAATCAAGTGGTGTTGTTATTGT 58.448 30.769 0.00 0.00 0.00 2.71
3123 6244 8.037758 TGAAAATCAAGTGGTGTTGTTATTGTT 58.962 29.630 0.00 0.00 0.00 2.83
3124 6245 7.769272 AAATCAAGTGGTGTTGTTATTGTTG 57.231 32.000 0.00 0.00 0.00 3.33
3125 6246 5.255710 TCAAGTGGTGTTGTTATTGTTGG 57.744 39.130 0.00 0.00 0.00 3.77
3126 6247 4.950475 TCAAGTGGTGTTGTTATTGTTGGA 59.050 37.500 0.00 0.00 0.00 3.53
3127 6248 4.911514 AGTGGTGTTGTTATTGTTGGAC 57.088 40.909 0.00 0.00 0.00 4.02
3128 6249 4.532834 AGTGGTGTTGTTATTGTTGGACT 58.467 39.130 0.00 0.00 0.00 3.85
3129 6250 4.578928 AGTGGTGTTGTTATTGTTGGACTC 59.421 41.667 0.00 0.00 0.00 3.36
3130 6251 4.336993 GTGGTGTTGTTATTGTTGGACTCA 59.663 41.667 0.00 0.00 0.00 3.41
3131 6252 4.578516 TGGTGTTGTTATTGTTGGACTCAG 59.421 41.667 0.00 0.00 0.00 3.35
3132 6253 4.819630 GGTGTTGTTATTGTTGGACTCAGA 59.180 41.667 0.00 0.00 0.00 3.27
3133 6254 5.298276 GGTGTTGTTATTGTTGGACTCAGAA 59.702 40.000 0.00 0.00 0.00 3.02
3134 6255 6.183360 GGTGTTGTTATTGTTGGACTCAGAAA 60.183 38.462 0.00 0.00 0.00 2.52
3135 6256 6.912591 GTGTTGTTATTGTTGGACTCAGAAAG 59.087 38.462 0.00 0.00 0.00 2.62
3136 6257 5.689383 TGTTATTGTTGGACTCAGAAAGC 57.311 39.130 0.00 0.00 0.00 3.51
3137 6258 5.129634 TGTTATTGTTGGACTCAGAAAGCA 58.870 37.500 0.00 0.00 0.00 3.91
3138 6259 5.008613 TGTTATTGTTGGACTCAGAAAGCAC 59.991 40.000 0.00 0.00 0.00 4.40
3139 6260 2.708216 TGTTGGACTCAGAAAGCACA 57.292 45.000 0.00 0.00 0.00 4.57
3140 6261 2.288666 TGTTGGACTCAGAAAGCACAC 58.711 47.619 0.00 0.00 0.00 3.82
3141 6262 2.288666 GTTGGACTCAGAAAGCACACA 58.711 47.619 0.00 0.00 0.00 3.72
3142 6263 1.953559 TGGACTCAGAAAGCACACAC 58.046 50.000 0.00 0.00 0.00 3.82
3143 6264 1.209261 TGGACTCAGAAAGCACACACA 59.791 47.619 0.00 0.00 0.00 3.72
3144 6265 1.869767 GGACTCAGAAAGCACACACAG 59.130 52.381 0.00 0.00 0.00 3.66
3145 6266 1.262683 GACTCAGAAAGCACACACAGC 59.737 52.381 0.00 0.00 0.00 4.40
3146 6267 1.134280 ACTCAGAAAGCACACACAGCT 60.134 47.619 0.00 0.00 45.97 4.24
3153 6274 2.455674 AGCACACACAGCTTTATCGA 57.544 45.000 0.00 0.00 39.87 3.59
3154 6275 2.977914 AGCACACACAGCTTTATCGAT 58.022 42.857 2.16 2.16 39.87 3.59
3155 6276 2.674852 AGCACACACAGCTTTATCGATG 59.325 45.455 8.54 0.00 39.87 3.84
3156 6277 2.416547 GCACACACAGCTTTATCGATGT 59.583 45.455 8.54 0.00 33.10 3.06
3157 6278 3.120199 GCACACACAGCTTTATCGATGTT 60.120 43.478 8.54 0.00 29.89 2.71
3158 6279 4.397382 CACACACAGCTTTATCGATGTTG 58.603 43.478 8.54 2.25 29.89 3.33
3159 6280 3.120199 ACACACAGCTTTATCGATGTTGC 60.120 43.478 8.54 9.04 29.89 4.17
3160 6281 2.420022 ACACAGCTTTATCGATGTTGCC 59.580 45.455 8.54 0.00 29.89 4.52
3161 6282 2.679837 CACAGCTTTATCGATGTTGCCT 59.320 45.455 8.54 0.00 29.89 4.75
3162 6283 2.939103 ACAGCTTTATCGATGTTGCCTC 59.061 45.455 8.54 0.00 27.27 4.70
3163 6284 2.938451 CAGCTTTATCGATGTTGCCTCA 59.062 45.455 8.54 0.00 0.00 3.86
3164 6285 3.562973 CAGCTTTATCGATGTTGCCTCAT 59.437 43.478 8.54 0.00 0.00 2.90
3165 6286 4.036027 CAGCTTTATCGATGTTGCCTCATT 59.964 41.667 8.54 0.00 0.00 2.57
3166 6287 4.036027 AGCTTTATCGATGTTGCCTCATTG 59.964 41.667 8.54 0.63 0.00 2.82
3167 6288 4.201950 GCTTTATCGATGTTGCCTCATTGT 60.202 41.667 8.54 0.00 32.68 2.71
3168 6289 5.484173 TTTATCGATGTTGCCTCATTGTC 57.516 39.130 8.54 0.00 32.68 3.18
3169 6290 1.737838 TCGATGTTGCCTCATTGTCC 58.262 50.000 5.69 0.00 32.68 4.02
3170 6291 1.003003 TCGATGTTGCCTCATTGTCCA 59.997 47.619 5.69 0.00 32.68 4.02
3171 6292 1.399440 CGATGTTGCCTCATTGTCCAG 59.601 52.381 0.00 0.00 0.00 3.86
3172 6293 2.715046 GATGTTGCCTCATTGTCCAGA 58.285 47.619 0.00 0.00 0.00 3.86
3173 6294 2.655090 TGTTGCCTCATTGTCCAGAA 57.345 45.000 0.00 0.00 0.00 3.02
3174 6295 3.159213 TGTTGCCTCATTGTCCAGAAT 57.841 42.857 0.00 0.00 0.00 2.40
3175 6296 3.499338 TGTTGCCTCATTGTCCAGAATT 58.501 40.909 0.00 0.00 0.00 2.17
3176 6297 3.507233 TGTTGCCTCATTGTCCAGAATTC 59.493 43.478 0.00 0.00 0.00 2.17
3177 6298 3.438216 TGCCTCATTGTCCAGAATTCA 57.562 42.857 8.44 0.00 0.00 2.57
3178 6299 3.349927 TGCCTCATTGTCCAGAATTCAG 58.650 45.455 8.44 0.00 0.00 3.02
3179 6300 3.009363 TGCCTCATTGTCCAGAATTCAGA 59.991 43.478 8.44 0.91 0.00 3.27
3180 6301 3.376546 GCCTCATTGTCCAGAATTCAGAC 59.623 47.826 17.36 17.36 0.00 3.51
3181 6302 4.841422 CCTCATTGTCCAGAATTCAGACT 58.159 43.478 22.03 7.17 0.00 3.24
3182 6303 5.251764 CCTCATTGTCCAGAATTCAGACTT 58.748 41.667 22.03 11.79 0.00 3.01
3183 6304 6.409704 CCTCATTGTCCAGAATTCAGACTTA 58.590 40.000 22.03 14.08 0.00 2.24
3184 6305 6.881065 CCTCATTGTCCAGAATTCAGACTTAA 59.119 38.462 22.03 13.46 0.00 1.85
3185 6306 7.148340 CCTCATTGTCCAGAATTCAGACTTAAC 60.148 40.741 22.03 7.02 0.00 2.01
3186 6307 6.655003 TCATTGTCCAGAATTCAGACTTAACC 59.345 38.462 22.03 3.58 0.00 2.85
3187 6308 5.560722 TGTCCAGAATTCAGACTTAACCA 57.439 39.130 22.03 5.58 0.00 3.67
3188 6309 5.305585 TGTCCAGAATTCAGACTTAACCAC 58.694 41.667 22.03 2.93 0.00 4.16
3189 6310 5.163248 TGTCCAGAATTCAGACTTAACCACA 60.163 40.000 22.03 4.93 0.00 4.17
3190 6311 5.763204 GTCCAGAATTCAGACTTAACCACAA 59.237 40.000 17.07 0.00 0.00 3.33
3191 6312 5.997746 TCCAGAATTCAGACTTAACCACAAG 59.002 40.000 8.44 0.00 0.00 3.16
3192 6313 5.997746 CCAGAATTCAGACTTAACCACAAGA 59.002 40.000 8.44 0.00 0.00 3.02
3193 6314 6.486657 CCAGAATTCAGACTTAACCACAAGAA 59.513 38.462 8.44 0.00 0.00 2.52
3194 6315 7.355778 CAGAATTCAGACTTAACCACAAGAAC 58.644 38.462 8.44 0.00 0.00 3.01
3195 6316 7.227512 CAGAATTCAGACTTAACCACAAGAACT 59.772 37.037 8.44 0.00 0.00 3.01
3196 6317 7.442666 AGAATTCAGACTTAACCACAAGAACTC 59.557 37.037 8.44 0.00 0.00 3.01
3197 6318 5.607939 TCAGACTTAACCACAAGAACTCA 57.392 39.130 0.00 0.00 0.00 3.41
3198 6319 5.984725 TCAGACTTAACCACAAGAACTCAA 58.015 37.500 0.00 0.00 0.00 3.02
3199 6320 6.411376 TCAGACTTAACCACAAGAACTCAAA 58.589 36.000 0.00 0.00 0.00 2.69
3200 6321 7.054124 TCAGACTTAACCACAAGAACTCAAAT 58.946 34.615 0.00 0.00 0.00 2.32
3201 6322 8.208224 TCAGACTTAACCACAAGAACTCAAATA 58.792 33.333 0.00 0.00 0.00 1.40
3202 6323 8.499162 CAGACTTAACCACAAGAACTCAAATAG 58.501 37.037 0.00 0.00 0.00 1.73
3203 6324 7.173390 AGACTTAACCACAAGAACTCAAATAGC 59.827 37.037 0.00 0.00 0.00 2.97
3204 6325 6.206829 ACTTAACCACAAGAACTCAAATAGCC 59.793 38.462 0.00 0.00 0.00 3.93
3205 6326 4.373156 ACCACAAGAACTCAAATAGCCT 57.627 40.909 0.00 0.00 0.00 4.58
3206 6327 4.327680 ACCACAAGAACTCAAATAGCCTC 58.672 43.478 0.00 0.00 0.00 4.70
3207 6328 4.042187 ACCACAAGAACTCAAATAGCCTCT 59.958 41.667 0.00 0.00 0.00 3.69
3208 6329 4.394300 CCACAAGAACTCAAATAGCCTCTG 59.606 45.833 0.00 0.00 0.00 3.35
3209 6330 5.240891 CACAAGAACTCAAATAGCCTCTGA 58.759 41.667 0.00 0.00 0.00 3.27
3210 6331 5.121454 CACAAGAACTCAAATAGCCTCTGAC 59.879 44.000 0.00 0.00 0.00 3.51
3211 6332 5.221722 ACAAGAACTCAAATAGCCTCTGACA 60.222 40.000 0.00 0.00 0.00 3.58
3212 6333 5.083533 AGAACTCAAATAGCCTCTGACAG 57.916 43.478 0.00 0.00 0.00 3.51
3213 6334 4.530161 AGAACTCAAATAGCCTCTGACAGT 59.470 41.667 1.59 0.00 0.00 3.55
3214 6335 4.899352 ACTCAAATAGCCTCTGACAGTT 57.101 40.909 1.59 0.00 0.00 3.16
3215 6336 6.211584 AGAACTCAAATAGCCTCTGACAGTTA 59.788 38.462 1.59 0.00 0.00 2.24
3216 6337 6.360370 ACTCAAATAGCCTCTGACAGTTAA 57.640 37.500 1.59 0.00 0.00 2.01
3217 6338 6.402222 ACTCAAATAGCCTCTGACAGTTAAG 58.598 40.000 1.59 0.00 0.00 1.85
3218 6339 5.734720 TCAAATAGCCTCTGACAGTTAAGG 58.265 41.667 1.59 3.34 0.00 2.69
3219 6340 4.762289 AATAGCCTCTGACAGTTAAGGG 57.238 45.455 9.98 4.52 0.00 3.95
3220 6341 1.280457 AGCCTCTGACAGTTAAGGGG 58.720 55.000 9.98 0.00 37.09 4.79
3221 6342 1.203313 AGCCTCTGACAGTTAAGGGGA 60.203 52.381 9.98 0.00 35.95 4.81
3222 6343 1.628846 GCCTCTGACAGTTAAGGGGAA 59.371 52.381 9.98 0.00 35.95 3.97
3223 6344 2.615747 GCCTCTGACAGTTAAGGGGAAC 60.616 54.545 9.98 0.00 35.95 3.62
3224 6345 2.637872 CCTCTGACAGTTAAGGGGAACA 59.362 50.000 1.59 0.00 35.95 3.18
3225 6346 3.072476 CCTCTGACAGTTAAGGGGAACAA 59.928 47.826 1.59 0.00 35.95 2.83
3226 6347 4.263506 CCTCTGACAGTTAAGGGGAACAAT 60.264 45.833 1.59 0.00 35.95 2.71
3227 6348 5.316987 CTCTGACAGTTAAGGGGAACAATT 58.683 41.667 1.59 0.00 0.00 2.32
3228 6349 5.070001 TCTGACAGTTAAGGGGAACAATTG 58.930 41.667 3.24 3.24 0.00 2.32
3229 6350 5.055265 TGACAGTTAAGGGGAACAATTGA 57.945 39.130 13.59 0.00 0.00 2.57
3230 6351 5.640147 TGACAGTTAAGGGGAACAATTGAT 58.360 37.500 13.59 0.00 0.00 2.57
3231 6352 5.710099 TGACAGTTAAGGGGAACAATTGATC 59.290 40.000 13.59 10.06 0.00 2.92
3232 6353 5.892348 ACAGTTAAGGGGAACAATTGATCT 58.108 37.500 13.59 0.00 0.00 2.75
3233 6354 5.711976 ACAGTTAAGGGGAACAATTGATCTG 59.288 40.000 13.59 4.30 0.00 2.90
3234 6355 5.711976 CAGTTAAGGGGAACAATTGATCTGT 59.288 40.000 13.59 0.03 0.00 3.41
3235 6356 5.946377 AGTTAAGGGGAACAATTGATCTGTC 59.054 40.000 13.59 4.38 0.00 3.51
3236 6357 4.387026 AAGGGGAACAATTGATCTGTCA 57.613 40.909 13.59 0.00 0.00 3.58
3237 6358 3.960571 AGGGGAACAATTGATCTGTCAG 58.039 45.455 13.59 0.00 35.39 3.51
3238 6359 3.331889 AGGGGAACAATTGATCTGTCAGT 59.668 43.478 13.59 0.00 35.39 3.41
3239 6360 3.691609 GGGGAACAATTGATCTGTCAGTC 59.308 47.826 13.59 0.00 35.39 3.51
3240 6361 4.566488 GGGGAACAATTGATCTGTCAGTCT 60.566 45.833 13.59 0.00 35.39 3.24
3241 6362 4.394300 GGGAACAATTGATCTGTCAGTCTG 59.606 45.833 13.59 0.00 35.39 3.51
3242 6363 5.240891 GGAACAATTGATCTGTCAGTCTGA 58.759 41.667 13.59 0.00 35.39 3.27
3243 6364 5.702670 GGAACAATTGATCTGTCAGTCTGAA 59.297 40.000 13.59 0.00 35.39 3.02
3244 6365 6.205464 GGAACAATTGATCTGTCAGTCTGAAA 59.795 38.462 13.59 0.00 35.39 2.69
3245 6366 7.094463 GGAACAATTGATCTGTCAGTCTGAAAT 60.094 37.037 13.59 0.00 35.39 2.17
3246 6367 7.756395 ACAATTGATCTGTCAGTCTGAAATT 57.244 32.000 13.59 3.32 35.39 1.82
3247 6368 7.814642 ACAATTGATCTGTCAGTCTGAAATTC 58.185 34.615 13.59 0.49 35.39 2.17
3248 6369 6.998968 ATTGATCTGTCAGTCTGAAATTCC 57.001 37.500 3.51 0.00 35.39 3.01
3249 6370 5.752036 TGATCTGTCAGTCTGAAATTCCT 57.248 39.130 3.51 0.00 0.00 3.36
3250 6371 6.857437 TGATCTGTCAGTCTGAAATTCCTA 57.143 37.500 3.51 0.00 0.00 2.94
3251 6372 6.634805 TGATCTGTCAGTCTGAAATTCCTAC 58.365 40.000 3.51 0.00 0.00 3.18
3252 6373 6.211384 TGATCTGTCAGTCTGAAATTCCTACA 59.789 38.462 3.51 0.00 0.00 2.74
3253 6374 5.784177 TCTGTCAGTCTGAAATTCCTACAC 58.216 41.667 3.51 0.00 0.00 2.90
3254 6375 5.540337 TCTGTCAGTCTGAAATTCCTACACT 59.460 40.000 3.51 0.00 0.00 3.55
3255 6376 6.719829 TCTGTCAGTCTGAAATTCCTACACTA 59.280 38.462 3.51 0.00 0.00 2.74
3256 6377 7.232737 TCTGTCAGTCTGAAATTCCTACACTAA 59.767 37.037 3.51 0.00 0.00 2.24
3257 6378 7.152645 TGTCAGTCTGAAATTCCTACACTAAC 58.847 38.462 3.51 0.00 0.00 2.34
3258 6379 7.015292 TGTCAGTCTGAAATTCCTACACTAACT 59.985 37.037 3.51 0.00 0.00 2.24
3259 6380 7.873505 GTCAGTCTGAAATTCCTACACTAACTT 59.126 37.037 3.51 0.00 0.00 2.66
3260 6381 7.872993 TCAGTCTGAAATTCCTACACTAACTTG 59.127 37.037 0.00 0.00 0.00 3.16
3261 6382 7.657761 CAGTCTGAAATTCCTACACTAACTTGT 59.342 37.037 0.00 0.00 0.00 3.16
3262 6383 8.211629 AGTCTGAAATTCCTACACTAACTTGTT 58.788 33.333 0.00 0.00 0.00 2.83
3263 6384 8.283291 GTCTGAAATTCCTACACTAACTTGTTG 58.717 37.037 0.00 0.00 0.00 3.33
3264 6385 7.444183 TCTGAAATTCCTACACTAACTTGTTGG 59.556 37.037 0.00 0.00 42.01 3.77
3265 6386 7.057894 TGAAATTCCTACACTAACTTGTTGGT 58.942 34.615 4.10 0.00 41.54 3.67
3266 6387 7.558444 TGAAATTCCTACACTAACTTGTTGGTT 59.442 33.333 0.00 0.00 41.54 3.67
3267 6388 6.877611 ATTCCTACACTAACTTGTTGGTTG 57.122 37.500 0.00 0.37 41.54 3.77
3268 6389 4.131596 TCCTACACTAACTTGTTGGTTGC 58.868 43.478 0.00 0.00 41.54 4.17
3269 6390 3.880490 CCTACACTAACTTGTTGGTTGCA 59.120 43.478 0.00 0.00 37.54 4.08
3270 6391 4.024048 CCTACACTAACTTGTTGGTTGCAG 60.024 45.833 0.00 0.00 37.54 4.41
3271 6392 2.687935 ACACTAACTTGTTGGTTGCAGG 59.312 45.455 0.00 0.00 0.00 4.85
3272 6393 2.034558 CACTAACTTGTTGGTTGCAGGG 59.965 50.000 0.00 0.00 0.00 4.45
3273 6394 2.306847 CTAACTTGTTGGTTGCAGGGT 58.693 47.619 0.00 0.00 0.00 4.34
3274 6395 1.111277 AACTTGTTGGTTGCAGGGTC 58.889 50.000 0.00 0.00 0.00 4.46
3275 6396 0.033601 ACTTGTTGGTTGCAGGGTCA 60.034 50.000 0.00 0.00 0.00 4.02
3276 6397 0.385390 CTTGTTGGTTGCAGGGTCAC 59.615 55.000 0.00 0.00 0.00 3.67
3277 6398 0.323816 TTGTTGGTTGCAGGGTCACA 60.324 50.000 0.00 0.00 0.00 3.58
3278 6399 1.034838 TGTTGGTTGCAGGGTCACAC 61.035 55.000 0.00 0.00 0.00 3.82
3279 6400 1.454847 TTGGTTGCAGGGTCACACC 60.455 57.895 0.00 0.00 37.60 4.16
3280 6401 1.932156 TTGGTTGCAGGGTCACACCT 61.932 55.000 3.31 0.00 43.08 4.00
3281 6402 1.152756 GGTTGCAGGGTCACACCTT 60.153 57.895 0.00 0.00 39.34 3.50
3282 6403 0.755327 GGTTGCAGGGTCACACCTTT 60.755 55.000 0.00 0.00 39.34 3.11
3283 6404 1.477923 GGTTGCAGGGTCACACCTTTA 60.478 52.381 0.00 0.00 39.34 1.85
3284 6405 1.607148 GTTGCAGGGTCACACCTTTAC 59.393 52.381 0.00 0.00 39.34 2.01
3285 6406 1.136828 TGCAGGGTCACACCTTTACT 58.863 50.000 0.00 0.00 39.34 2.24
3286 6407 1.493022 TGCAGGGTCACACCTTTACTT 59.507 47.619 0.00 0.00 39.34 2.24
3287 6408 2.706723 TGCAGGGTCACACCTTTACTTA 59.293 45.455 0.00 0.00 39.34 2.24
3288 6409 3.329520 TGCAGGGTCACACCTTTACTTAT 59.670 43.478 0.00 0.00 39.34 1.73
3289 6410 3.939592 GCAGGGTCACACCTTTACTTATC 59.060 47.826 0.00 0.00 39.34 1.75
3290 6411 4.514401 CAGGGTCACACCTTTACTTATCC 58.486 47.826 0.00 0.00 39.34 2.59
3291 6412 4.225267 CAGGGTCACACCTTTACTTATCCT 59.775 45.833 0.00 0.00 39.34 3.24
3292 6413 5.424252 CAGGGTCACACCTTTACTTATCCTA 59.576 44.000 0.00 0.00 39.34 2.94
3293 6414 6.099845 CAGGGTCACACCTTTACTTATCCTAT 59.900 42.308 0.00 0.00 39.34 2.57
3294 6415 6.099845 AGGGTCACACCTTTACTTATCCTATG 59.900 42.308 0.00 0.00 37.69 2.23
3295 6416 6.099269 GGGTCACACCTTTACTTATCCTATGA 59.901 42.308 0.00 0.00 38.64 2.15
3296 6417 7.365295 GGGTCACACCTTTACTTATCCTATGAA 60.365 40.741 0.00 0.00 38.64 2.57
3297 6418 8.044908 GGTCACACCTTTACTTATCCTATGAAA 58.955 37.037 0.00 0.00 34.73 2.69
3298 6419 9.099454 GTCACACCTTTACTTATCCTATGAAAG 57.901 37.037 0.00 0.00 0.00 2.62
3299 6420 8.822805 TCACACCTTTACTTATCCTATGAAAGT 58.177 33.333 0.00 0.00 37.27 2.66
3300 6421 9.099454 CACACCTTTACTTATCCTATGAAAGTC 57.901 37.037 0.00 0.00 35.23 3.01
3301 6422 8.822805 ACACCTTTACTTATCCTATGAAAGTCA 58.177 33.333 0.00 0.00 35.23 3.41
3302 6423 9.099454 CACCTTTACTTATCCTATGAAAGTCAC 57.901 37.037 0.00 0.00 35.23 3.67
3303 6424 9.047947 ACCTTTACTTATCCTATGAAAGTCACT 57.952 33.333 0.00 0.00 35.23 3.41
3304 6425 9.319143 CCTTTACTTATCCTATGAAAGTCACTG 57.681 37.037 0.00 0.00 35.23 3.66
3313 6434 7.671302 TCCTATGAAAGTCACTGATATTAGGC 58.329 38.462 0.00 0.00 0.00 3.93
3314 6435 7.290014 TCCTATGAAAGTCACTGATATTAGGCA 59.710 37.037 0.00 0.00 0.00 4.75
3315 6436 8.099537 CCTATGAAAGTCACTGATATTAGGCAT 58.900 37.037 0.00 0.00 0.00 4.40
3316 6437 7.741027 ATGAAAGTCACTGATATTAGGCATG 57.259 36.000 0.00 0.00 0.00 4.06
3317 6438 6.057533 TGAAAGTCACTGATATTAGGCATGG 58.942 40.000 0.00 0.00 0.00 3.66
3318 6439 5.894298 AAGTCACTGATATTAGGCATGGA 57.106 39.130 0.00 0.00 0.00 3.41
3319 6440 6.445451 AAGTCACTGATATTAGGCATGGAT 57.555 37.500 0.00 0.00 0.00 3.41
3320 6441 6.047511 AGTCACTGATATTAGGCATGGATC 57.952 41.667 0.00 0.00 0.00 3.36
3321 6442 4.867047 GTCACTGATATTAGGCATGGATCG 59.133 45.833 0.00 0.00 0.00 3.69
3322 6443 4.081476 TCACTGATATTAGGCATGGATCGG 60.081 45.833 0.00 0.00 0.00 4.18
3323 6444 3.840666 ACTGATATTAGGCATGGATCGGT 59.159 43.478 0.00 0.00 32.50 4.69
3324 6445 4.287067 ACTGATATTAGGCATGGATCGGTT 59.713 41.667 0.00 0.00 33.34 4.44
3325 6446 4.578871 TGATATTAGGCATGGATCGGTTG 58.421 43.478 0.00 0.00 0.00 3.77
3326 6447 2.276732 ATTAGGCATGGATCGGTTGG 57.723 50.000 0.00 0.00 0.00 3.77
3327 6448 1.208706 TTAGGCATGGATCGGTTGGA 58.791 50.000 0.00 0.00 0.00 3.53
3328 6449 0.758734 TAGGCATGGATCGGTTGGAG 59.241 55.000 0.00 0.00 0.00 3.86
3329 6450 2.189499 GGCATGGATCGGTTGGAGC 61.189 63.158 0.00 0.00 0.00 4.70
3330 6451 1.451927 GCATGGATCGGTTGGAGCA 60.452 57.895 0.00 0.00 30.89 4.26
3331 6452 1.031571 GCATGGATCGGTTGGAGCAA 61.032 55.000 0.00 0.00 30.89 3.91
3332 6453 1.683943 CATGGATCGGTTGGAGCAAT 58.316 50.000 0.00 0.00 30.89 3.56
3333 6454 1.335810 CATGGATCGGTTGGAGCAATG 59.664 52.381 0.00 0.00 36.23 2.82
3334 6455 0.617935 TGGATCGGTTGGAGCAATGA 59.382 50.000 0.00 0.00 30.89 2.57
3335 6456 1.212688 TGGATCGGTTGGAGCAATGAT 59.787 47.619 0.00 0.00 30.89 2.45
3336 6457 1.605710 GGATCGGTTGGAGCAATGATG 59.394 52.381 0.00 0.00 30.89 3.07
3337 6458 2.292267 GATCGGTTGGAGCAATGATGT 58.708 47.619 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.760298 CAGATTGCTGCGGTGATATATAGATT 59.240 38.462 0.00 0.00 34.95 2.40
48 49 6.127225 ACAGATTGCTGCGGTGATATATAGAT 60.127 38.462 0.00 0.00 46.26 1.98
49 50 5.185828 ACAGATTGCTGCGGTGATATATAGA 59.814 40.000 0.00 0.00 46.26 1.98
50 51 5.414360 ACAGATTGCTGCGGTGATATATAG 58.586 41.667 0.00 0.00 46.26 1.31
51 52 5.405935 ACAGATTGCTGCGGTGATATATA 57.594 39.130 0.00 0.00 46.26 0.86
52 53 4.277515 ACAGATTGCTGCGGTGATATAT 57.722 40.909 0.00 0.00 46.26 0.86
53 54 3.751479 ACAGATTGCTGCGGTGATATA 57.249 42.857 0.00 0.00 46.26 0.86
54 55 2.627515 ACAGATTGCTGCGGTGATAT 57.372 45.000 0.00 0.00 46.26 1.63
55 56 2.167487 TGTACAGATTGCTGCGGTGATA 59.833 45.455 0.00 0.00 46.26 2.15
56 57 1.066215 TGTACAGATTGCTGCGGTGAT 60.066 47.619 0.00 0.00 46.26 3.06
57 58 0.320050 TGTACAGATTGCTGCGGTGA 59.680 50.000 0.00 0.00 46.26 4.02
58 59 1.328680 GATGTACAGATTGCTGCGGTG 59.671 52.381 0.33 0.00 46.26 4.94
100 113 1.881973 TGCAGGAGTTGATTGTGCTTC 59.118 47.619 0.00 0.00 35.11 3.86
135 153 3.674281 TGATTTTTGTAATTGCGCTGCTG 59.326 39.130 9.73 0.00 0.00 4.41
136 154 3.911868 TGATTTTTGTAATTGCGCTGCT 58.088 36.364 9.73 0.00 0.00 4.24
137 155 4.644044 TTGATTTTTGTAATTGCGCTGC 57.356 36.364 9.73 0.00 0.00 5.25
139 157 9.202273 TCTTTAATTGATTTTTGTAATTGCGCT 57.798 25.926 9.73 0.00 0.00 5.92
140 158 9.971744 ATCTTTAATTGATTTTTGTAATTGCGC 57.028 25.926 0.00 0.00 0.00 6.09
148 166 9.743057 TGTTCACGATCTTTAATTGATTTTTGT 57.257 25.926 0.00 0.00 0.00 2.83
195 213 5.567552 GTTCACTTATTGAAGCTGAGCATC 58.432 41.667 7.39 4.63 45.23 3.91
236 254 0.748450 TTGGTCTCCACGAACGTTCT 59.252 50.000 24.80 10.19 30.78 3.01
362 425 4.258543 TCCCGATAATCAAGGTGTTTGTC 58.741 43.478 0.00 0.00 38.01 3.18
386 451 1.503542 CGCTTGCTGTGGACATTCC 59.496 57.895 0.00 0.00 36.96 3.01
410 482 7.772332 ATCACCGACTAGCACTTATTTTAAG 57.228 36.000 0.00 0.00 0.00 1.85
454 1854 5.419542 TCAATGATTAAAGTCAGTCCCTCG 58.580 41.667 0.00 0.00 0.00 4.63
549 1949 5.103643 TCCTAGCTAGGTTGATGAGTTAGGA 60.104 44.000 33.84 13.22 45.51 2.94
604 2353 4.016444 GGGGAACAGCATATTTTGACTCA 58.984 43.478 0.00 0.00 0.00 3.41
610 2359 2.099405 CGTGGGGGAACAGCATATTTT 58.901 47.619 0.00 0.00 0.00 1.82
611 2360 1.762708 CGTGGGGGAACAGCATATTT 58.237 50.000 0.00 0.00 0.00 1.40
832 2621 8.591072 TGACCTTATTAGCTAGTGTGTTTAGTT 58.409 33.333 0.00 0.00 0.00 2.24
833 2622 8.130671 TGACCTTATTAGCTAGTGTGTTTAGT 57.869 34.615 0.00 0.00 0.00 2.24
834 2623 9.035607 CATGACCTTATTAGCTAGTGTGTTTAG 57.964 37.037 0.00 0.00 0.00 1.85
835 2624 7.494625 GCATGACCTTATTAGCTAGTGTGTTTA 59.505 37.037 0.00 0.00 0.00 2.01
836 2625 6.316390 GCATGACCTTATTAGCTAGTGTGTTT 59.684 38.462 0.00 0.00 0.00 2.83
889 2701 8.407832 TGGTTTCGACGAGTATTTATAGATCAA 58.592 33.333 0.00 0.00 0.00 2.57
982 2796 3.760684 GCCATCTCCAATTCTTGTTCACT 59.239 43.478 0.00 0.00 0.00 3.41
994 2808 1.451927 GTGCCATCGCCATCTCCAA 60.452 57.895 0.00 0.00 0.00 3.53
995 2809 2.190313 GTGCCATCGCCATCTCCA 59.810 61.111 0.00 0.00 0.00 3.86
1320 3182 7.159372 GGACACAGGGGTAGTATGTTTATATG 58.841 42.308 0.00 0.00 0.00 1.78
1342 3212 5.983540 AGTCTCATGTATTCAAGAAGGGAC 58.016 41.667 0.00 0.00 0.00 4.46
1445 3504 9.453572 ACACACATGAAAAATCTGATAGTGTAT 57.546 29.630 0.00 0.00 36.09 2.29
1499 3569 9.868389 TTGTACGTATCTATGTAGTACATTTCG 57.132 33.333 20.52 17.69 44.45 3.46
1575 3650 0.616395 TGGTCGGGTCCAGCAGAATA 60.616 55.000 0.00 0.00 33.19 1.75
1782 3857 1.079405 GATTGACCGGAAGCCGTCA 60.079 57.895 9.46 0.00 46.80 4.35
1793 3868 2.582498 CCTCGTCGGCGATTGACC 60.582 66.667 14.65 0.00 46.80 4.02
1827 3902 2.044946 AGCTGAAATGCCGGGGAC 60.045 61.111 2.18 0.00 0.00 4.46
2004 4080 1.371183 CGGGCACACCTTCTTGAGA 59.629 57.895 0.00 0.00 36.97 3.27
2197 4273 2.735857 GTTAGCGGCGTTGTCGGT 60.736 61.111 9.37 0.13 45.16 4.69
2223 4299 2.124151 GCGAACCTGGCCATCCAT 60.124 61.111 5.51 0.00 42.51 3.41
2241 4317 1.143813 CCATCTTCACCATAGCCCCT 58.856 55.000 0.00 0.00 0.00 4.79
2368 4459 1.956477 CAAGTTGTAGCTGCCCAAGTT 59.044 47.619 13.77 13.77 35.22 2.66
2396 4487 7.070074 ACCAAAATAACAAGGATTACACCAACA 59.930 33.333 0.00 0.00 0.00 3.33
2456 4547 6.927294 ACTTGTACATAGCTAATTTGAGGC 57.073 37.500 0.00 0.00 0.00 4.70
2548 4640 7.825761 AGTACGGGGTAAAATATGTAATATGGC 59.174 37.037 0.00 0.00 38.94 4.40
2553 4645 9.768662 CTGTTAGTACGGGGTAAAATATGTAAT 57.231 33.333 0.00 0.00 0.00 1.89
2609 4712 5.186021 ACATTCTAGTTGGTACCTGACTCAG 59.814 44.000 20.26 16.06 0.00 3.35
2618 4721 6.746364 CGAAGAGTACACATTCTAGTTGGTAC 59.254 42.308 0.00 0.00 33.20 3.34
2632 4735 0.169672 TGCGCCTACGAAGAGTACAC 59.830 55.000 4.18 0.00 43.93 2.90
2639 4742 0.800683 TGTCGATTGCGCCTACGAAG 60.801 55.000 18.04 0.00 43.93 3.79
2640 4743 0.179121 ATGTCGATTGCGCCTACGAA 60.179 50.000 18.04 10.98 43.93 3.85
2641 4744 0.869880 CATGTCGATTGCGCCTACGA 60.870 55.000 4.18 10.47 43.93 3.43
2642 4745 0.869880 TCATGTCGATTGCGCCTACG 60.870 55.000 4.18 7.97 44.07 3.51
2643 4746 1.502231 ATCATGTCGATTGCGCCTAC 58.498 50.000 4.18 0.00 37.46 3.18
2644 4747 3.378911 TTATCATGTCGATTGCGCCTA 57.621 42.857 4.18 0.00 35.39 3.93
2645 4748 2.238942 TTATCATGTCGATTGCGCCT 57.761 45.000 4.18 0.00 35.39 5.52
2667 4770 6.362248 GGAGTATCTAAATTGTTTAGCCCCA 58.638 40.000 4.91 0.00 41.82 4.96
2728 5847 8.645487 CCGCTTTAGTACAACTTTTTACTAGAG 58.355 37.037 0.00 7.84 36.65 2.43
2730 5849 8.219105 CACCGCTTTAGTACAACTTTTTACTAG 58.781 37.037 0.00 0.00 33.39 2.57
2733 5852 6.718388 ACACCGCTTTAGTACAACTTTTTAC 58.282 36.000 0.00 0.00 0.00 2.01
2736 5855 4.877251 TGACACCGCTTTAGTACAACTTTT 59.123 37.500 0.00 0.00 0.00 2.27
2753 5872 9.994432 CTCACTTTGATCTAAATTATTGACACC 57.006 33.333 0.00 0.00 0.00 4.16
2769 5888 9.277783 GCCATCAAATATACTACTCACTTTGAT 57.722 33.333 0.00 0.00 41.50 2.57
2770 5889 8.264347 TGCCATCAAATATACTACTCACTTTGA 58.736 33.333 0.00 0.00 37.12 2.69
2771 5890 8.437360 TGCCATCAAATATACTACTCACTTTG 57.563 34.615 0.00 0.00 0.00 2.77
2772 5891 9.113838 CTTGCCATCAAATATACTACTCACTTT 57.886 33.333 0.00 0.00 0.00 2.66
2773 5892 7.227512 GCTTGCCATCAAATATACTACTCACTT 59.772 37.037 0.00 0.00 0.00 3.16
2775 5894 6.483307 TGCTTGCCATCAAATATACTACTCAC 59.517 38.462 0.00 0.00 0.00 3.51
2776 5895 6.591001 TGCTTGCCATCAAATATACTACTCA 58.409 36.000 0.00 0.00 0.00 3.41
2823 5943 6.299141 ACTTCTTCAATTGTTTAGCTCTCCA 58.701 36.000 5.13 0.00 0.00 3.86
2844 5964 2.806244 GACCATTTGTGCGTCTGTACTT 59.194 45.455 0.00 0.00 0.00 2.24
2858 5978 3.350833 CCAGCTAAAGCAGAGACCATTT 58.649 45.455 4.54 0.00 45.16 2.32
2867 5987 4.525912 ATTTTTCACCCAGCTAAAGCAG 57.474 40.909 4.54 0.00 45.16 4.24
2873 5993 3.244044 GGTGCAAATTTTTCACCCAGCTA 60.244 43.478 20.84 0.00 43.27 3.32
2882 6003 4.379652 ACATGACCTGGTGCAAATTTTTC 58.620 39.130 2.82 0.00 0.00 2.29
2888 6009 2.819019 CACATACATGACCTGGTGCAAA 59.181 45.455 2.82 0.00 0.00 3.68
2896 6017 3.912496 TGCTTAGCACATACATGACCT 57.088 42.857 1.39 0.00 31.71 3.85
2943 6064 2.886523 TCCTCAGTTTGCAATCCAACTG 59.113 45.455 18.76 18.76 35.62 3.16
2945 6066 3.149196 TCTCCTCAGTTTGCAATCCAAC 58.851 45.455 0.00 0.00 31.97 3.77
2949 6070 2.746362 CCACTCTCCTCAGTTTGCAATC 59.254 50.000 0.00 0.00 0.00 2.67
2951 6072 1.490490 ACCACTCTCCTCAGTTTGCAA 59.510 47.619 0.00 0.00 0.00 4.08
2959 6080 7.687837 GCATCAAGAATAATACCACTCTCCTCA 60.688 40.741 0.00 0.00 0.00 3.86
2971 6092 8.733458 GCATCCAATACAGCATCAAGAATAATA 58.267 33.333 0.00 0.00 0.00 0.98
2975 6096 5.138276 AGCATCCAATACAGCATCAAGAAT 58.862 37.500 0.00 0.00 0.00 2.40
2979 6100 5.278610 GCAATAGCATCCAATACAGCATCAA 60.279 40.000 0.00 0.00 41.58 2.57
3008 6129 3.137360 AGTTCTTCTTCCACTGCTTCCTT 59.863 43.478 0.00 0.00 0.00 3.36
3026 6147 1.597742 TTGACTGGCTGAAGCAGTTC 58.402 50.000 4.43 0.00 44.36 3.01
3028 6149 1.531423 CATTGACTGGCTGAAGCAGT 58.469 50.000 4.43 5.94 44.36 4.40
3029 6150 0.170561 GCATTGACTGGCTGAAGCAG 59.829 55.000 4.43 2.83 44.36 4.24
3030 6151 0.251033 AGCATTGACTGGCTGAAGCA 60.251 50.000 4.43 0.00 44.36 3.91
3046 6167 2.285773 ATCTGCACCCGACAGAGCA 61.286 57.895 0.00 0.00 46.71 4.26
3048 6169 0.463204 ATGATCTGCACCCGACAGAG 59.537 55.000 0.00 0.00 46.71 3.35
3056 6177 6.541641 AGAATAGTTCTTGAATGATCTGCACC 59.458 38.462 0.00 0.00 36.36 5.01
3084 6205 8.950210 CCACTTGATTTTCAATAAGAGCTCTTA 58.050 33.333 32.65 32.65 42.04 2.10
3085 6206 7.449704 ACCACTTGATTTTCAATAAGAGCTCTT 59.550 33.333 30.63 30.63 35.59 2.85
3086 6207 6.944862 ACCACTTGATTTTCAATAAGAGCTCT 59.055 34.615 11.45 11.45 35.59 4.09
3087 6208 7.025963 CACCACTTGATTTTCAATAAGAGCTC 58.974 38.462 5.27 5.27 35.59 4.09
3088 6209 6.491403 ACACCACTTGATTTTCAATAAGAGCT 59.509 34.615 0.00 0.00 35.59 4.09
3089 6210 6.681777 ACACCACTTGATTTTCAATAAGAGC 58.318 36.000 0.00 0.00 35.59 4.09
3090 6211 8.137437 ACAACACCACTTGATTTTCAATAAGAG 58.863 33.333 0.00 0.00 35.59 2.85
3091 6212 8.006298 ACAACACCACTTGATTTTCAATAAGA 57.994 30.769 0.00 0.00 35.59 2.10
3092 6213 8.647143 AACAACACCACTTGATTTTCAATAAG 57.353 30.769 0.00 0.00 35.59 1.73
3095 6216 9.044150 CAATAACAACACCACTTGATTTTCAAT 57.956 29.630 0.00 0.00 35.59 2.57
3096 6217 8.037758 ACAATAACAACACCACTTGATTTTCAA 58.962 29.630 0.00 0.00 34.79 2.69
3097 6218 7.551585 ACAATAACAACACCACTTGATTTTCA 58.448 30.769 0.00 0.00 0.00 2.69
3098 6219 8.327429 CAACAATAACAACACCACTTGATTTTC 58.673 33.333 0.00 0.00 0.00 2.29
3099 6220 7.279758 CCAACAATAACAACACCACTTGATTTT 59.720 33.333 0.00 0.00 0.00 1.82
3100 6221 6.760770 CCAACAATAACAACACCACTTGATTT 59.239 34.615 0.00 0.00 0.00 2.17
3101 6222 6.097554 TCCAACAATAACAACACCACTTGATT 59.902 34.615 0.00 0.00 0.00 2.57
3102 6223 5.596361 TCCAACAATAACAACACCACTTGAT 59.404 36.000 0.00 0.00 0.00 2.57
3103 6224 4.950475 TCCAACAATAACAACACCACTTGA 59.050 37.500 0.00 0.00 0.00 3.02
3104 6225 5.040635 GTCCAACAATAACAACACCACTTG 58.959 41.667 0.00 0.00 0.00 3.16
3105 6226 4.953579 AGTCCAACAATAACAACACCACTT 59.046 37.500 0.00 0.00 0.00 3.16
3106 6227 4.532834 AGTCCAACAATAACAACACCACT 58.467 39.130 0.00 0.00 0.00 4.00
3107 6228 4.336993 TGAGTCCAACAATAACAACACCAC 59.663 41.667 0.00 0.00 0.00 4.16
3108 6229 4.527944 TGAGTCCAACAATAACAACACCA 58.472 39.130 0.00 0.00 0.00 4.17
3109 6230 4.819630 TCTGAGTCCAACAATAACAACACC 59.180 41.667 0.00 0.00 0.00 4.16
3110 6231 6.371809 TTCTGAGTCCAACAATAACAACAC 57.628 37.500 0.00 0.00 0.00 3.32
3111 6232 6.459573 GCTTTCTGAGTCCAACAATAACAACA 60.460 38.462 0.00 0.00 0.00 3.33
3112 6233 5.915196 GCTTTCTGAGTCCAACAATAACAAC 59.085 40.000 0.00 0.00 0.00 3.32
3113 6234 5.592282 TGCTTTCTGAGTCCAACAATAACAA 59.408 36.000 0.00 0.00 0.00 2.83
3114 6235 5.008613 GTGCTTTCTGAGTCCAACAATAACA 59.991 40.000 0.00 0.00 0.00 2.41
3115 6236 5.008613 TGTGCTTTCTGAGTCCAACAATAAC 59.991 40.000 0.00 0.00 0.00 1.89
3116 6237 5.008613 GTGTGCTTTCTGAGTCCAACAATAA 59.991 40.000 0.00 0.00 0.00 1.40
3117 6238 4.515191 GTGTGCTTTCTGAGTCCAACAATA 59.485 41.667 0.00 0.00 0.00 1.90
3118 6239 3.316308 GTGTGCTTTCTGAGTCCAACAAT 59.684 43.478 0.00 0.00 0.00 2.71
3119 6240 2.682856 GTGTGCTTTCTGAGTCCAACAA 59.317 45.455 0.00 0.00 0.00 2.83
3120 6241 2.288666 GTGTGCTTTCTGAGTCCAACA 58.711 47.619 0.00 0.00 0.00 3.33
3121 6242 2.032178 GTGTGTGCTTTCTGAGTCCAAC 59.968 50.000 0.00 0.00 0.00 3.77
3122 6243 2.288666 GTGTGTGCTTTCTGAGTCCAA 58.711 47.619 0.00 0.00 0.00 3.53
3123 6244 1.209261 TGTGTGTGCTTTCTGAGTCCA 59.791 47.619 0.00 0.00 0.00 4.02
3124 6245 1.869767 CTGTGTGTGCTTTCTGAGTCC 59.130 52.381 0.00 0.00 0.00 3.85
3125 6246 1.262683 GCTGTGTGTGCTTTCTGAGTC 59.737 52.381 0.00 0.00 0.00 3.36
3126 6247 1.134280 AGCTGTGTGTGCTTTCTGAGT 60.134 47.619 0.00 0.00 37.52 3.41
3127 6248 1.590932 AGCTGTGTGTGCTTTCTGAG 58.409 50.000 0.00 0.00 37.52 3.35
3128 6249 3.786656 AGCTGTGTGTGCTTTCTGA 57.213 47.368 0.00 0.00 37.52 3.27
3134 6255 2.455674 TCGATAAAGCTGTGTGTGCT 57.544 45.000 0.00 0.00 43.32 4.40
3135 6256 2.416547 ACATCGATAAAGCTGTGTGTGC 59.583 45.455 0.00 0.00 0.00 4.57
3136 6257 4.397382 CAACATCGATAAAGCTGTGTGTG 58.603 43.478 0.00 0.00 0.00 3.82
3137 6258 3.120199 GCAACATCGATAAAGCTGTGTGT 60.120 43.478 0.00 0.00 0.00 3.72
3138 6259 3.419915 GCAACATCGATAAAGCTGTGTG 58.580 45.455 0.00 0.00 0.00 3.82
3139 6260 2.420022 GGCAACATCGATAAAGCTGTGT 59.580 45.455 0.00 0.00 0.00 3.72
3140 6261 2.679837 AGGCAACATCGATAAAGCTGTG 59.320 45.455 0.00 0.00 41.41 3.66
3141 6262 2.939103 GAGGCAACATCGATAAAGCTGT 59.061 45.455 0.00 0.00 41.41 4.40
3142 6263 2.938451 TGAGGCAACATCGATAAAGCTG 59.062 45.455 0.00 0.00 41.41 4.24
3143 6264 3.266510 TGAGGCAACATCGATAAAGCT 57.733 42.857 0.00 0.00 41.41 3.74
3144 6265 4.201950 ACAATGAGGCAACATCGATAAAGC 60.202 41.667 0.00 1.85 41.41 3.51
3145 6266 5.490139 ACAATGAGGCAACATCGATAAAG 57.510 39.130 0.00 0.00 41.41 1.85
3146 6267 4.335315 GGACAATGAGGCAACATCGATAAA 59.665 41.667 0.00 0.00 41.41 1.40
3147 6268 3.876914 GGACAATGAGGCAACATCGATAA 59.123 43.478 0.00 0.00 41.41 1.75
3148 6269 3.118445 TGGACAATGAGGCAACATCGATA 60.118 43.478 0.00 0.00 41.41 2.92
3149 6270 2.292267 GGACAATGAGGCAACATCGAT 58.708 47.619 0.00 0.00 41.41 3.59
3150 6271 1.003003 TGGACAATGAGGCAACATCGA 59.997 47.619 0.00 0.00 41.41 3.59
3151 6272 1.399440 CTGGACAATGAGGCAACATCG 59.601 52.381 0.00 0.00 41.41 3.84
3152 6273 2.715046 TCTGGACAATGAGGCAACATC 58.285 47.619 0.00 0.00 41.41 3.06
3153 6274 2.885135 TCTGGACAATGAGGCAACAT 57.115 45.000 0.00 0.00 41.41 2.71
3154 6275 2.655090 TTCTGGACAATGAGGCAACA 57.345 45.000 0.00 0.00 41.41 3.33
3155 6276 3.507233 TGAATTCTGGACAATGAGGCAAC 59.493 43.478 7.05 0.00 0.00 4.17
3156 6277 3.760151 CTGAATTCTGGACAATGAGGCAA 59.240 43.478 7.05 0.00 0.00 4.52
3157 6278 3.009363 TCTGAATTCTGGACAATGAGGCA 59.991 43.478 11.89 0.00 0.00 4.75
3158 6279 3.376546 GTCTGAATTCTGGACAATGAGGC 59.623 47.826 19.63 1.23 0.00 4.70
3159 6280 4.841422 AGTCTGAATTCTGGACAATGAGG 58.159 43.478 23.55 0.00 32.98 3.86
3160 6281 7.148340 GGTTAAGTCTGAATTCTGGACAATGAG 60.148 40.741 23.55 6.23 32.98 2.90
3161 6282 6.655003 GGTTAAGTCTGAATTCTGGACAATGA 59.345 38.462 23.55 12.53 32.98 2.57
3162 6283 6.430925 TGGTTAAGTCTGAATTCTGGACAATG 59.569 38.462 23.55 0.00 32.98 2.82
3163 6284 6.431234 GTGGTTAAGTCTGAATTCTGGACAAT 59.569 38.462 23.55 17.33 32.98 2.71
3164 6285 5.763204 GTGGTTAAGTCTGAATTCTGGACAA 59.237 40.000 23.55 13.47 32.98 3.18
3165 6286 5.163248 TGTGGTTAAGTCTGAATTCTGGACA 60.163 40.000 23.55 9.77 32.98 4.02
3166 6287 5.305585 TGTGGTTAAGTCTGAATTCTGGAC 58.694 41.667 17.99 17.99 0.00 4.02
3167 6288 5.560722 TGTGGTTAAGTCTGAATTCTGGA 57.439 39.130 11.89 5.26 0.00 3.86
3168 6289 5.997746 TCTTGTGGTTAAGTCTGAATTCTGG 59.002 40.000 11.89 3.05 0.00 3.86
3169 6290 7.227512 AGTTCTTGTGGTTAAGTCTGAATTCTG 59.772 37.037 7.05 6.50 0.00 3.02
3170 6291 7.283329 AGTTCTTGTGGTTAAGTCTGAATTCT 58.717 34.615 7.05 0.00 0.00 2.40
3171 6292 7.226720 TGAGTTCTTGTGGTTAAGTCTGAATTC 59.773 37.037 0.00 0.00 0.00 2.17
3172 6293 7.054124 TGAGTTCTTGTGGTTAAGTCTGAATT 58.946 34.615 0.00 0.00 0.00 2.17
3173 6294 6.591935 TGAGTTCTTGTGGTTAAGTCTGAAT 58.408 36.000 0.00 0.00 0.00 2.57
3174 6295 5.984725 TGAGTTCTTGTGGTTAAGTCTGAA 58.015 37.500 0.00 0.00 0.00 3.02
3175 6296 5.607939 TGAGTTCTTGTGGTTAAGTCTGA 57.392 39.130 0.00 0.00 0.00 3.27
3176 6297 6.677781 TTTGAGTTCTTGTGGTTAAGTCTG 57.322 37.500 0.00 0.00 0.00 3.51
3177 6298 7.173390 GCTATTTGAGTTCTTGTGGTTAAGTCT 59.827 37.037 0.00 0.00 0.00 3.24
3178 6299 7.298854 GCTATTTGAGTTCTTGTGGTTAAGTC 58.701 38.462 0.00 0.00 0.00 3.01
3179 6300 6.206829 GGCTATTTGAGTTCTTGTGGTTAAGT 59.793 38.462 0.00 0.00 0.00 2.24
3180 6301 6.431234 AGGCTATTTGAGTTCTTGTGGTTAAG 59.569 38.462 0.00 0.00 0.00 1.85
3181 6302 6.303839 AGGCTATTTGAGTTCTTGTGGTTAA 58.696 36.000 0.00 0.00 0.00 2.01
3182 6303 5.876357 AGGCTATTTGAGTTCTTGTGGTTA 58.124 37.500 0.00 0.00 0.00 2.85
3183 6304 4.729868 AGGCTATTTGAGTTCTTGTGGTT 58.270 39.130 0.00 0.00 0.00 3.67
3184 6305 4.042187 AGAGGCTATTTGAGTTCTTGTGGT 59.958 41.667 0.00 0.00 0.00 4.16
3185 6306 4.394300 CAGAGGCTATTTGAGTTCTTGTGG 59.606 45.833 0.00 0.00 0.00 4.17
3186 6307 5.121454 GTCAGAGGCTATTTGAGTTCTTGTG 59.879 44.000 0.00 0.00 0.00 3.33
3187 6308 5.221722 TGTCAGAGGCTATTTGAGTTCTTGT 60.222 40.000 0.00 0.00 0.00 3.16
3188 6309 5.240891 TGTCAGAGGCTATTTGAGTTCTTG 58.759 41.667 0.00 0.00 0.00 3.02
3189 6310 5.012561 ACTGTCAGAGGCTATTTGAGTTCTT 59.987 40.000 6.91 0.00 0.00 2.52
3190 6311 4.530161 ACTGTCAGAGGCTATTTGAGTTCT 59.470 41.667 6.91 0.00 0.00 3.01
3191 6312 4.826556 ACTGTCAGAGGCTATTTGAGTTC 58.173 43.478 6.91 0.00 0.00 3.01
3192 6313 4.899352 ACTGTCAGAGGCTATTTGAGTT 57.101 40.909 6.91 0.00 0.00 3.01
3193 6314 4.899352 AACTGTCAGAGGCTATTTGAGT 57.101 40.909 6.91 0.00 0.00 3.41
3194 6315 5.814705 CCTTAACTGTCAGAGGCTATTTGAG 59.185 44.000 6.91 0.00 0.00 3.02
3195 6316 5.338381 CCCTTAACTGTCAGAGGCTATTTGA 60.338 44.000 6.91 0.00 0.00 2.69
3196 6317 4.878397 CCCTTAACTGTCAGAGGCTATTTG 59.122 45.833 6.91 0.00 0.00 2.32
3197 6318 4.080299 CCCCTTAACTGTCAGAGGCTATTT 60.080 45.833 6.91 0.00 0.00 1.40
3198 6319 3.456277 CCCCTTAACTGTCAGAGGCTATT 59.544 47.826 6.91 0.00 0.00 1.73
3199 6320 3.041946 CCCCTTAACTGTCAGAGGCTAT 58.958 50.000 6.91 0.00 0.00 2.97
3200 6321 2.043939 TCCCCTTAACTGTCAGAGGCTA 59.956 50.000 6.91 0.00 0.00 3.93
3201 6322 1.203313 TCCCCTTAACTGTCAGAGGCT 60.203 52.381 6.91 0.00 0.00 4.58
3202 6323 1.276622 TCCCCTTAACTGTCAGAGGC 58.723 55.000 6.91 0.00 0.00 4.70
3203 6324 2.637872 TGTTCCCCTTAACTGTCAGAGG 59.362 50.000 6.91 2.86 0.00 3.69
3204 6325 4.351874 TTGTTCCCCTTAACTGTCAGAG 57.648 45.455 6.91 0.00 0.00 3.35
3205 6326 4.993705 ATTGTTCCCCTTAACTGTCAGA 57.006 40.909 6.91 0.00 0.00 3.27
3206 6327 5.070001 TCAATTGTTCCCCTTAACTGTCAG 58.930 41.667 5.13 0.00 0.00 3.51
3207 6328 5.055265 TCAATTGTTCCCCTTAACTGTCA 57.945 39.130 5.13 0.00 0.00 3.58
3208 6329 5.946377 AGATCAATTGTTCCCCTTAACTGTC 59.054 40.000 11.99 0.00 0.00 3.51
3209 6330 5.711976 CAGATCAATTGTTCCCCTTAACTGT 59.288 40.000 11.99 0.00 0.00 3.55
3210 6331 5.711976 ACAGATCAATTGTTCCCCTTAACTG 59.288 40.000 11.99 4.56 0.00 3.16
3211 6332 5.892348 ACAGATCAATTGTTCCCCTTAACT 58.108 37.500 11.99 0.00 0.00 2.24
3212 6333 5.710099 TGACAGATCAATTGTTCCCCTTAAC 59.290 40.000 11.99 0.00 0.00 2.01
3213 6334 5.886609 TGACAGATCAATTGTTCCCCTTAA 58.113 37.500 11.99 0.00 0.00 1.85
3214 6335 5.014123 ACTGACAGATCAATTGTTCCCCTTA 59.986 40.000 10.08 0.00 33.30 2.69
3215 6336 4.202609 ACTGACAGATCAATTGTTCCCCTT 60.203 41.667 10.08 0.00 33.30 3.95
3216 6337 3.331889 ACTGACAGATCAATTGTTCCCCT 59.668 43.478 10.08 0.00 33.30 4.79
3217 6338 3.690460 ACTGACAGATCAATTGTTCCCC 58.310 45.455 10.08 3.96 33.30 4.81
3218 6339 4.394300 CAGACTGACAGATCAATTGTTCCC 59.606 45.833 10.08 4.25 33.30 3.97
3219 6340 5.240891 TCAGACTGACAGATCAATTGTTCC 58.759 41.667 10.08 0.62 33.30 3.62
3220 6341 6.791887 TTCAGACTGACAGATCAATTGTTC 57.208 37.500 10.08 6.88 33.30 3.18
3221 6342 7.756395 ATTTCAGACTGACAGATCAATTGTT 57.244 32.000 10.08 0.00 33.30 2.83
3222 6343 7.094463 GGAATTTCAGACTGACAGATCAATTGT 60.094 37.037 10.08 0.00 33.30 2.71
3223 6344 7.120873 AGGAATTTCAGACTGACAGATCAATTG 59.879 37.037 10.08 0.00 33.30 2.32
3224 6345 7.173722 AGGAATTTCAGACTGACAGATCAATT 58.826 34.615 10.08 7.40 33.30 2.32
3225 6346 6.719301 AGGAATTTCAGACTGACAGATCAAT 58.281 36.000 10.08 0.00 33.30 2.57
3226 6347 6.119240 AGGAATTTCAGACTGACAGATCAA 57.881 37.500 10.08 0.00 33.30 2.57
3227 6348 5.752036 AGGAATTTCAGACTGACAGATCA 57.248 39.130 10.08 0.00 0.00 2.92
3228 6349 6.533367 GTGTAGGAATTTCAGACTGACAGATC 59.467 42.308 10.08 3.28 0.00 2.75
3229 6350 6.212388 AGTGTAGGAATTTCAGACTGACAGAT 59.788 38.462 10.08 0.00 0.00 2.90
3230 6351 5.540337 AGTGTAGGAATTTCAGACTGACAGA 59.460 40.000 10.08 0.00 0.00 3.41
3231 6352 5.788450 AGTGTAGGAATTTCAGACTGACAG 58.212 41.667 4.15 0.00 0.00 3.51
3232 6353 5.808366 AGTGTAGGAATTTCAGACTGACA 57.192 39.130 4.15 0.00 0.00 3.58
3233 6354 7.379750 AGTTAGTGTAGGAATTTCAGACTGAC 58.620 38.462 4.15 0.00 0.00 3.51
3234 6355 7.540474 AGTTAGTGTAGGAATTTCAGACTGA 57.460 36.000 0.00 0.00 0.00 3.41
3235 6356 7.657761 ACAAGTTAGTGTAGGAATTTCAGACTG 59.342 37.037 0.00 0.00 0.00 3.51
3236 6357 7.736893 ACAAGTTAGTGTAGGAATTTCAGACT 58.263 34.615 0.00 0.00 0.00 3.24
3237 6358 7.964604 ACAAGTTAGTGTAGGAATTTCAGAC 57.035 36.000 0.00 0.00 0.00 3.51
3238 6359 7.444183 CCAACAAGTTAGTGTAGGAATTTCAGA 59.556 37.037 0.00 0.00 0.00 3.27
3239 6360 7.228706 ACCAACAAGTTAGTGTAGGAATTTCAG 59.771 37.037 0.00 0.00 0.00 3.02
3240 6361 7.057894 ACCAACAAGTTAGTGTAGGAATTTCA 58.942 34.615 0.00 0.00 0.00 2.69
3241 6362 7.506328 ACCAACAAGTTAGTGTAGGAATTTC 57.494 36.000 0.00 0.00 0.00 2.17
3242 6363 7.683463 GCAACCAACAAGTTAGTGTAGGAATTT 60.683 37.037 0.00 0.00 0.00 1.82
3243 6364 6.238925 GCAACCAACAAGTTAGTGTAGGAATT 60.239 38.462 0.00 0.00 0.00 2.17
3244 6365 5.240844 GCAACCAACAAGTTAGTGTAGGAAT 59.759 40.000 0.00 0.00 0.00 3.01
3245 6366 4.577283 GCAACCAACAAGTTAGTGTAGGAA 59.423 41.667 0.00 0.00 0.00 3.36
3246 6367 4.131596 GCAACCAACAAGTTAGTGTAGGA 58.868 43.478 0.00 0.00 0.00 2.94
3247 6368 3.880490 TGCAACCAACAAGTTAGTGTAGG 59.120 43.478 0.00 0.00 0.00 3.18
3248 6369 4.024048 CCTGCAACCAACAAGTTAGTGTAG 60.024 45.833 0.00 0.00 0.00 2.74
3249 6370 3.880490 CCTGCAACCAACAAGTTAGTGTA 59.120 43.478 0.00 0.00 0.00 2.90
3250 6371 2.687935 CCTGCAACCAACAAGTTAGTGT 59.312 45.455 0.00 0.00 0.00 3.55
3251 6372 2.034558 CCCTGCAACCAACAAGTTAGTG 59.965 50.000 0.00 0.00 0.00 2.74
3252 6373 2.306847 CCCTGCAACCAACAAGTTAGT 58.693 47.619 0.00 0.00 0.00 2.24
3253 6374 2.293399 GACCCTGCAACCAACAAGTTAG 59.707 50.000 0.00 0.00 0.00 2.34
3254 6375 2.303175 GACCCTGCAACCAACAAGTTA 58.697 47.619 0.00 0.00 0.00 2.24
3255 6376 1.111277 GACCCTGCAACCAACAAGTT 58.889 50.000 0.00 0.00 0.00 2.66
3256 6377 0.033601 TGACCCTGCAACCAACAAGT 60.034 50.000 0.00 0.00 0.00 3.16
3257 6378 0.385390 GTGACCCTGCAACCAACAAG 59.615 55.000 0.00 0.00 0.00 3.16
3258 6379 0.323816 TGTGACCCTGCAACCAACAA 60.324 50.000 0.00 0.00 0.00 2.83
3259 6380 1.034838 GTGTGACCCTGCAACCAACA 61.035 55.000 0.00 0.00 0.00 3.33
3260 6381 1.733526 GTGTGACCCTGCAACCAAC 59.266 57.895 0.00 0.00 0.00 3.77
3261 6382 1.454847 GGTGTGACCCTGCAACCAA 60.455 57.895 0.00 0.00 30.04 3.67
3262 6383 1.932156 AAGGTGTGACCCTGCAACCA 61.932 55.000 4.39 0.00 39.75 3.67
3263 6384 0.755327 AAAGGTGTGACCCTGCAACC 60.755 55.000 0.00 0.00 39.75 3.77
3264 6385 1.607148 GTAAAGGTGTGACCCTGCAAC 59.393 52.381 0.00 0.00 39.75 4.17
3265 6386 1.493022 AGTAAAGGTGTGACCCTGCAA 59.507 47.619 0.00 0.00 39.75 4.08
3266 6387 1.136828 AGTAAAGGTGTGACCCTGCA 58.863 50.000 0.00 0.00 39.75 4.41
3267 6388 2.271944 AAGTAAAGGTGTGACCCTGC 57.728 50.000 0.00 0.00 39.75 4.85
3268 6389 4.225267 AGGATAAGTAAAGGTGTGACCCTG 59.775 45.833 0.00 0.00 39.75 4.45
3269 6390 4.436079 AGGATAAGTAAAGGTGTGACCCT 58.564 43.478 0.00 0.00 39.75 4.34
3270 6391 4.838904 AGGATAAGTAAAGGTGTGACCC 57.161 45.455 0.00 0.00 39.75 4.46
3271 6392 7.120923 TCATAGGATAAGTAAAGGTGTGACC 57.879 40.000 0.00 0.00 38.99 4.02
3272 6393 9.099454 CTTTCATAGGATAAGTAAAGGTGTGAC 57.901 37.037 0.00 0.00 0.00 3.67
3273 6394 8.822805 ACTTTCATAGGATAAGTAAAGGTGTGA 58.177 33.333 0.00 0.00 30.75 3.58
3274 6395 9.099454 GACTTTCATAGGATAAGTAAAGGTGTG 57.901 37.037 5.39 0.00 32.58 3.82
3275 6396 8.822805 TGACTTTCATAGGATAAGTAAAGGTGT 58.177 33.333 5.39 0.00 32.58 4.16
3276 6397 9.099454 GTGACTTTCATAGGATAAGTAAAGGTG 57.901 37.037 5.39 0.00 32.58 4.00
3277 6398 9.047947 AGTGACTTTCATAGGATAAGTAAAGGT 57.952 33.333 5.39 0.00 32.58 3.50
3278 6399 9.319143 CAGTGACTTTCATAGGATAAGTAAAGG 57.681 37.037 5.39 0.00 32.58 3.11
3287 6408 8.317679 GCCTAATATCAGTGACTTTCATAGGAT 58.682 37.037 15.20 0.14 0.00 3.24
3288 6409 7.290014 TGCCTAATATCAGTGACTTTCATAGGA 59.710 37.037 15.20 0.00 0.00 2.94
3289 6410 7.445121 TGCCTAATATCAGTGACTTTCATAGG 58.555 38.462 0.00 3.73 0.00 2.57
3290 6411 8.933807 CATGCCTAATATCAGTGACTTTCATAG 58.066 37.037 0.00 0.00 0.00 2.23
3291 6412 7.879677 CCATGCCTAATATCAGTGACTTTCATA 59.120 37.037 0.00 0.00 0.00 2.15
3292 6413 6.713903 CCATGCCTAATATCAGTGACTTTCAT 59.286 38.462 0.00 0.00 0.00 2.57
3293 6414 6.057533 CCATGCCTAATATCAGTGACTTTCA 58.942 40.000 0.00 0.00 0.00 2.69
3294 6415 6.291377 TCCATGCCTAATATCAGTGACTTTC 58.709 40.000 0.00 0.00 0.00 2.62
3295 6416 6.252599 TCCATGCCTAATATCAGTGACTTT 57.747 37.500 0.00 0.00 0.00 2.66
3296 6417 5.894298 TCCATGCCTAATATCAGTGACTT 57.106 39.130 0.00 0.00 0.00 3.01
3297 6418 5.337089 CGATCCATGCCTAATATCAGTGACT 60.337 44.000 0.00 0.00 0.00 3.41
3298 6419 4.867047 CGATCCATGCCTAATATCAGTGAC 59.133 45.833 0.00 0.00 0.00 3.67
3299 6420 4.081476 CCGATCCATGCCTAATATCAGTGA 60.081 45.833 0.00 0.00 0.00 3.41
3300 6421 4.186926 CCGATCCATGCCTAATATCAGTG 58.813 47.826 0.00 0.00 0.00 3.66
3301 6422 3.840666 ACCGATCCATGCCTAATATCAGT 59.159 43.478 0.00 0.00 0.00 3.41
3302 6423 4.478206 ACCGATCCATGCCTAATATCAG 57.522 45.455 0.00 0.00 0.00 2.90
3303 6424 4.565444 CCAACCGATCCATGCCTAATATCA 60.565 45.833 0.00 0.00 0.00 2.15
3304 6425 3.941483 CCAACCGATCCATGCCTAATATC 59.059 47.826 0.00 0.00 0.00 1.63
3305 6426 3.587061 TCCAACCGATCCATGCCTAATAT 59.413 43.478 0.00 0.00 0.00 1.28
3306 6427 2.976185 TCCAACCGATCCATGCCTAATA 59.024 45.455 0.00 0.00 0.00 0.98
3307 6428 1.774254 TCCAACCGATCCATGCCTAAT 59.226 47.619 0.00 0.00 0.00 1.73
3308 6429 1.140852 CTCCAACCGATCCATGCCTAA 59.859 52.381 0.00 0.00 0.00 2.69
3309 6430 0.758734 CTCCAACCGATCCATGCCTA 59.241 55.000 0.00 0.00 0.00 3.93
3310 6431 1.528824 CTCCAACCGATCCATGCCT 59.471 57.895 0.00 0.00 0.00 4.75
3311 6432 2.189499 GCTCCAACCGATCCATGCC 61.189 63.158 0.00 0.00 0.00 4.40
3312 6433 1.031571 TTGCTCCAACCGATCCATGC 61.032 55.000 0.00 0.00 0.00 4.06
3313 6434 1.335810 CATTGCTCCAACCGATCCATG 59.664 52.381 0.00 0.00 0.00 3.66
3314 6435 1.212688 TCATTGCTCCAACCGATCCAT 59.787 47.619 0.00 0.00 0.00 3.41
3315 6436 0.617935 TCATTGCTCCAACCGATCCA 59.382 50.000 0.00 0.00 0.00 3.41
3316 6437 1.605710 CATCATTGCTCCAACCGATCC 59.394 52.381 0.00 0.00 0.00 3.36
3317 6438 2.292267 ACATCATTGCTCCAACCGATC 58.708 47.619 0.00 0.00 0.00 3.69
3318 6439 2.425143 ACATCATTGCTCCAACCGAT 57.575 45.000 0.00 0.00 0.00 4.18
3319 6440 3.955145 ACATCATTGCTCCAACCGA 57.045 47.368 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.