Multiple sequence alignment - TraesCS5D01G437600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G437600 chr5D 100.000 6159 0 0 1 6159 491449009 491442851 0.000000e+00 11374.0
1 TraesCS5D01G437600 chr5D 90.511 137 6 5 5718 5850 534572670 534572803 2.280000e-39 174.0
2 TraesCS5D01G437600 chr5D 85.714 63 9 0 5566 5628 542273709 542273771 3.980000e-07 67.6
3 TraesCS5D01G437600 chr5B 92.283 3369 158 34 2163 5496 606029168 606025867 0.000000e+00 4687.0
4 TraesCS5D01G437600 chr5B 93.707 1319 39 21 817 2105 606030449 606029145 0.000000e+00 1936.0
5 TraesCS5D01G437600 chr5B 91.449 421 35 1 1 421 606037855 606037436 1.490000e-160 577.0
6 TraesCS5D01G437600 chr5B 94.512 328 18 0 492 819 606037439 606037112 1.980000e-139 507.0
7 TraesCS5D01G437600 chr5B 95.455 198 9 0 5962 6159 606025540 606025343 3.580000e-82 316.0
8 TraesCS5D01G437600 chr5B 79.821 223 36 7 398 620 605527851 605527638 2.970000e-33 154.0
9 TraesCS5D01G437600 chr5B 95.699 93 4 0 5847 5939 532347335 532347427 3.850000e-32 150.0
10 TraesCS5D01G437600 chr5B 86.957 92 6 2 5634 5719 606025633 606025542 1.410000e-16 99.0
11 TraesCS5D01G437600 chr5A 94.662 2379 94 9 2217 4569 613596563 613594192 0.000000e+00 3659.0
12 TraesCS5D01G437600 chr5A 88.667 1800 111 35 380 2105 613598449 613596669 0.000000e+00 2108.0
13 TraesCS5D01G437600 chr5A 90.224 1115 61 17 4610 5720 613594198 613593128 0.000000e+00 1411.0
14 TraesCS5D01G437600 chr5A 89.209 278 23 3 1 273 613615721 613615446 2.130000e-89 340.0
15 TraesCS5D01G437600 chr5A 93.467 199 12 1 5962 6159 613593121 613592923 1.680000e-75 294.0
16 TraesCS5D01G437600 chr5A 82.759 232 30 7 383 611 676752006 676751782 1.350000e-46 198.0
17 TraesCS5D01G437600 chr2D 85.455 275 36 4 113 385 83811535 83811807 3.630000e-72 283.0
18 TraesCS5D01G437600 chr2D 83.556 225 37 0 160 384 23732206 23732430 1.740000e-50 211.0
19 TraesCS5D01G437600 chr2D 90.370 135 11 2 5718 5850 29624353 29624487 6.350000e-40 176.0
20 TraesCS5D01G437600 chr2D 94.000 50 3 0 2217 2266 218045365 218045414 6.620000e-10 76.8
21 TraesCS5D01G437600 chr4A 85.455 220 32 0 160 379 631374618 631374837 4.800000e-56 230.0
22 TraesCS5D01G437600 chr4A 79.757 247 36 11 381 622 438310590 438310353 3.820000e-37 167.0
23 TraesCS5D01G437600 chr4A 82.723 191 23 6 382 569 175416186 175416003 1.780000e-35 161.0
24 TraesCS5D01G437600 chr3B 84.255 235 32 5 124 356 755077933 755077702 2.230000e-54 224.0
25 TraesCS5D01G437600 chr3B 81.061 264 44 5 125 385 349933839 349934099 8.090000e-49 206.0
26 TraesCS5D01G437600 chr3B 93.204 103 5 2 5837 5939 629921483 629921383 3.850000e-32 150.0
27 TraesCS5D01G437600 chr6B 81.955 266 40 8 113 372 514668394 514668657 1.040000e-52 219.0
28 TraesCS5D01G437600 chr6B 95.699 93 4 0 5847 5939 654640647 654640739 3.850000e-32 150.0
29 TraesCS5D01G437600 chr6B 77.959 245 43 9 379 621 483377357 483377592 6.440000e-30 143.0
30 TraesCS5D01G437600 chr4B 81.853 259 40 4 119 377 456580450 456580199 1.740000e-50 211.0
31 TraesCS5D01G437600 chr4B 84.492 187 26 1 432 618 499908202 499908019 1.360000e-41 182.0
32 TraesCS5D01G437600 chr4B 92.233 103 6 2 5837 5939 499586500 499586400 1.790000e-30 145.0
33 TraesCS5D01G437600 chr4B 95.652 46 2 0 2217 2262 14016232 14016277 2.380000e-09 75.0
34 TraesCS5D01G437600 chr7B 82.000 250 38 5 123 370 591602814 591603058 8.090000e-49 206.0
35 TraesCS5D01G437600 chr7B 95.699 93 4 0 5847 5939 41171707 41171615 3.850000e-32 150.0
36 TraesCS5D01G437600 chr7B 81.250 192 25 8 378 566 624466147 624466330 1.790000e-30 145.0
37 TraesCS5D01G437600 chr7B 86.508 126 10 5 5838 5958 503865970 503865847 1.390000e-26 132.0
38 TraesCS5D01G437600 chr7D 86.528 193 17 6 382 571 4737165 4736979 2.910000e-48 204.0
39 TraesCS5D01G437600 chr7D 85.222 203 25 4 182 384 248457652 248457849 2.910000e-48 204.0
40 TraesCS5D01G437600 chr7D 82.743 226 39 0 160 385 270708074 270707849 1.050000e-47 202.0
41 TraesCS5D01G437600 chr7D 89.706 136 11 2 5718 5850 4504314 4504179 2.950000e-38 171.0
42 TraesCS5D01G437600 chr7D 81.188 202 35 3 379 578 19968180 19968380 6.390000e-35 159.0
43 TraesCS5D01G437600 chr7D 95.556 45 2 0 2217 2261 611816915 611816959 8.560000e-09 73.1
44 TraesCS5D01G437600 chr4D 80.669 269 40 8 119 385 68486664 68486922 1.350000e-46 198.0
45 TraesCS5D01G437600 chr4D 92.683 123 5 3 5724 5842 402553290 402553168 2.280000e-39 174.0
46 TraesCS5D01G437600 chr4D 92.157 102 8 0 5838 5939 54799341 54799442 1.790000e-30 145.0
47 TraesCS5D01G437600 chrUn 89.542 153 11 4 5702 5850 95996590 95996439 8.150000e-44 189.0
48 TraesCS5D01G437600 chr7A 91.912 136 8 2 5718 5850 130229695 130229560 2.930000e-43 187.0
49 TraesCS5D01G437600 chr7A 85.345 116 17 0 3 118 10013094 10013209 3.020000e-23 121.0
50 TraesCS5D01G437600 chr7A 89.062 64 7 0 5565 5628 699935221 699935158 5.120000e-11 80.5
51 TraesCS5D01G437600 chr7A 88.136 59 6 1 5569 5627 98754868 98754811 1.110000e-07 69.4
52 TraesCS5D01G437600 chr3A 83.168 202 24 7 380 578 577630560 577630754 6.350000e-40 176.0
53 TraesCS5D01G437600 chr3A 89.706 136 11 2 5718 5850 739801396 739801261 2.950000e-38 171.0
54 TraesCS5D01G437600 chr3A 97.826 46 1 0 2217 2262 600084558 600084513 5.120000e-11 80.5
55 TraesCS5D01G437600 chr3A 95.652 46 2 0 2218 2263 600084571 600084616 2.380000e-09 75.0
56 TraesCS5D01G437600 chr2A 90.441 136 8 3 5718 5850 107386657 107386524 2.280000e-39 174.0
57 TraesCS5D01G437600 chr2A 88.636 44 3 2 5510 5551 678029256 678029299 1.100000e-02 52.8
58 TraesCS5D01G437600 chr1A 88.514 148 12 4 5714 5858 452449997 452450142 2.280000e-39 174.0
59 TraesCS5D01G437600 chr1A 93.750 48 3 0 5581 5628 10004836 10004789 8.560000e-09 73.1
60 TraesCS5D01G437600 chr1A 88.333 60 7 0 5569 5628 427302675 427302616 8.560000e-09 73.1
61 TraesCS5D01G437600 chr1A 86.364 66 9 0 5569 5634 568702338 568702273 8.560000e-09 73.1
62 TraesCS5D01G437600 chr1A 86.885 61 6 2 5579 5638 517098406 517098347 3.980000e-07 67.6
63 TraesCS5D01G437600 chr1A 91.304 46 4 0 2217 2262 80190790 80190745 5.150000e-06 63.9
64 TraesCS5D01G437600 chr1D 80.841 214 35 4 411 623 420378675 420378883 4.940000e-36 163.0
65 TraesCS5D01G437600 chr1B 95.789 95 4 0 5845 5939 415223384 415223290 2.970000e-33 154.0
66 TraesCS5D01G437600 chr1B 88.793 116 13 0 1 116 565684189 565684304 6.440000e-30 143.0
67 TraesCS5D01G437600 chr1B 94.340 53 3 0 2217 2269 402110404 402110456 1.420000e-11 82.4
68 TraesCS5D01G437600 chr1B 91.304 46 4 0 2217 2262 138037445 138037400 5.150000e-06 63.9
69 TraesCS5D01G437600 chr2B 94.792 96 5 0 5844 5939 695437641 695437546 3.850000e-32 150.0
70 TraesCS5D01G437600 chr3D 85.714 70 9 1 5573 5641 30427872 30427941 8.560000e-09 73.1
71 TraesCS5D01G437600 chr6D 84.375 64 10 0 5565 5628 78749713 78749776 5.150000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G437600 chr5D 491442851 491449009 6158 True 11374.0 11374 100.0000 1 6159 1 chr5D.!!$R1 6158
1 TraesCS5D01G437600 chr5B 606025343 606030449 5106 True 1759.5 4687 92.1005 817 6159 4 chr5B.!!$R2 5342
2 TraesCS5D01G437600 chr5B 606037112 606037855 743 True 542.0 577 92.9805 1 819 2 chr5B.!!$R3 818
3 TraesCS5D01G437600 chr5A 613592923 613598449 5526 True 1868.0 3659 91.7550 380 6159 4 chr5A.!!$R3 5779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.031111 TCCCTCCCTCCGATCACATT 60.031 55.000 0.00 0.0 0.00 2.71 F
439 440 0.035739 TTTGGTGAGTTAGGGCGGTC 59.964 55.000 0.00 0.0 0.00 4.79 F
1798 1924 0.036590 CCAAGTTGCCAATTTGGGGG 59.963 55.000 20.65 0.0 42.63 5.40 F
2110 2261 0.183492 TGTCTATTGCATCCCCTGGC 59.817 55.000 0.00 0.0 0.00 4.85 F
2111 2262 0.183492 GTCTATTGCATCCCCTGGCA 59.817 55.000 0.00 0.0 38.46 4.92 F
2174 2341 0.767375 ACTGCCTCTGTCACCATTGT 59.233 50.000 0.00 0.0 0.00 2.71 F
3525 3719 0.836400 TTGTTCTCCCTCGAGCCCTT 60.836 55.000 6.99 0.0 35.94 3.95 F
3526 3720 1.219393 GTTCTCCCTCGAGCCCTTG 59.781 63.158 6.99 0.0 35.94 3.61 F
5114 5313 0.384309 TTTGCAGTCTCTGTCGTCGT 59.616 50.000 0.00 0.0 33.43 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2256 0.033796 ATCCTGACAATGGTGCCAGG 60.034 55.000 2.90 2.90 45.63 4.45 R
2106 2257 1.100510 CATCCTGACAATGGTGCCAG 58.899 55.000 0.00 0.00 0.00 4.85 R
3616 3810 0.461870 TGCTGGCCGCATGTAGTTAG 60.462 55.000 16.62 0.00 45.47 2.34 R
3736 3930 2.356125 GCCACTTCCATATGGTGTGACT 60.356 50.000 32.26 10.17 40.36 3.41 R
4012 4206 3.623060 CACCCACATTAAAGGTCATCGAG 59.377 47.826 0.00 0.00 0.00 4.04 R
4167 4361 2.810488 AAATTGGCTGGGAGCTGGGG 62.810 60.000 0.00 0.00 41.99 4.96 R
4947 5145 0.745845 ATGGGTGCAGACGAATCAGC 60.746 55.000 0.00 0.00 37.84 4.26 R
5122 5321 0.807667 GCGCCCACACATCAGACTAG 60.808 60.000 0.00 0.00 0.00 2.57 R
5940 6310 0.400093 CCCTCCCTCCGTTCCCTAAT 60.400 60.000 0.00 0.00 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.174009 CTCGATGTACAAGTGGATTTCGT 58.826 43.478 0.00 0.00 0.00 3.85
37 38 2.146342 ACAAGTGGATTTCGTCAGCTG 58.854 47.619 7.63 7.63 0.00 4.24
46 47 0.889186 TTCGTCAGCTGGAAAAGGGC 60.889 55.000 15.13 0.00 0.00 5.19
66 67 1.137194 TGGTACACCATCGCGTACG 59.863 57.895 11.84 11.84 42.01 3.67
96 97 2.521708 GCAAGTGCCCAGGGTTGT 60.522 61.111 7.55 0.00 34.31 3.32
155 156 0.336737 AGATGAACGGGGAGAGGAGT 59.663 55.000 0.00 0.00 0.00 3.85
172 173 2.292323 GGAGTACAAGGAGGAGGAGGAA 60.292 54.545 0.00 0.00 0.00 3.36
183 184 1.646189 GAGGAGGAAGCGATGTGAAC 58.354 55.000 0.00 0.00 0.00 3.18
208 209 1.202582 CCAGAGCGCGGCTTATATAGT 59.797 52.381 8.83 0.00 39.88 2.12
288 289 0.391263 GGTTCCTCGGAAATCTGCGT 60.391 55.000 0.00 0.00 37.69 5.24
290 291 0.108329 TTCCTCGGAAATCTGCGTCC 60.108 55.000 0.00 0.00 37.69 4.79
327 328 2.623915 CCGAGAGGTCACGTCGGTT 61.624 63.158 1.80 0.00 46.66 4.44
330 331 0.179169 GAGAGGTCACGTCGGTTAGC 60.179 60.000 0.00 0.00 0.00 3.09
333 334 3.177249 GTCACGTCGGTTAGCGCC 61.177 66.667 2.29 0.00 0.00 6.53
357 358 0.031111 TCCCTCCCTCCGATCACATT 60.031 55.000 0.00 0.00 0.00 2.71
365 366 1.524355 CTCCGATCACATTGCGACATC 59.476 52.381 0.00 0.00 0.00 3.06
418 419 4.677151 GGGAGGGGTGGTGAGGGT 62.677 72.222 0.00 0.00 0.00 4.34
419 420 2.531942 GGAGGGGTGGTGAGGGTT 60.532 66.667 0.00 0.00 0.00 4.11
420 421 2.160853 GGAGGGGTGGTGAGGGTTT 61.161 63.158 0.00 0.00 0.00 3.27
421 422 1.726192 GGAGGGGTGGTGAGGGTTTT 61.726 60.000 0.00 0.00 0.00 2.43
422 423 0.187606 GAGGGGTGGTGAGGGTTTTT 59.812 55.000 0.00 0.00 0.00 1.94
423 424 0.105709 AGGGGTGGTGAGGGTTTTTG 60.106 55.000 0.00 0.00 0.00 2.44
424 425 1.118965 GGGGTGGTGAGGGTTTTTGG 61.119 60.000 0.00 0.00 0.00 3.28
425 426 0.397957 GGGTGGTGAGGGTTTTTGGT 60.398 55.000 0.00 0.00 0.00 3.67
426 427 0.750249 GGTGGTGAGGGTTTTTGGTG 59.250 55.000 0.00 0.00 0.00 4.17
427 428 1.686741 GGTGGTGAGGGTTTTTGGTGA 60.687 52.381 0.00 0.00 0.00 4.02
428 429 1.681264 GTGGTGAGGGTTTTTGGTGAG 59.319 52.381 0.00 0.00 0.00 3.51
429 430 1.286553 TGGTGAGGGTTTTTGGTGAGT 59.713 47.619 0.00 0.00 0.00 3.41
430 431 2.291930 TGGTGAGGGTTTTTGGTGAGTT 60.292 45.455 0.00 0.00 0.00 3.01
431 432 3.053544 TGGTGAGGGTTTTTGGTGAGTTA 60.054 43.478 0.00 0.00 0.00 2.24
432 433 3.568430 GGTGAGGGTTTTTGGTGAGTTAG 59.432 47.826 0.00 0.00 0.00 2.34
433 434 3.568430 GTGAGGGTTTTTGGTGAGTTAGG 59.432 47.826 0.00 0.00 0.00 2.69
434 435 3.154710 GAGGGTTTTTGGTGAGTTAGGG 58.845 50.000 0.00 0.00 0.00 3.53
435 436 1.616865 GGGTTTTTGGTGAGTTAGGGC 59.383 52.381 0.00 0.00 0.00 5.19
436 437 1.268625 GGTTTTTGGTGAGTTAGGGCG 59.731 52.381 0.00 0.00 0.00 6.13
437 438 1.268625 GTTTTTGGTGAGTTAGGGCGG 59.731 52.381 0.00 0.00 0.00 6.13
438 439 0.475044 TTTTGGTGAGTTAGGGCGGT 59.525 50.000 0.00 0.00 0.00 5.68
439 440 0.035739 TTTGGTGAGTTAGGGCGGTC 59.964 55.000 0.00 0.00 0.00 4.79
440 441 1.122632 TTGGTGAGTTAGGGCGGTCA 61.123 55.000 0.00 0.00 0.00 4.02
441 442 1.218316 GGTGAGTTAGGGCGGTCAG 59.782 63.158 0.00 0.00 0.00 3.51
442 443 1.255667 GGTGAGTTAGGGCGGTCAGA 61.256 60.000 0.00 0.00 0.00 3.27
443 444 0.606604 GTGAGTTAGGGCGGTCAGAA 59.393 55.000 0.00 0.00 0.00 3.02
444 445 0.895530 TGAGTTAGGGCGGTCAGAAG 59.104 55.000 0.00 0.00 0.00 2.85
445 446 0.460459 GAGTTAGGGCGGTCAGAAGC 60.460 60.000 0.00 0.00 0.00 3.86
447 448 3.014085 TTAGGGCGGTCAGAAGCGG 62.014 63.158 0.00 0.00 46.20 5.52
452 453 3.197790 CGGTCAGAAGCGGGCATG 61.198 66.667 0.00 0.00 42.53 4.06
453 454 2.825836 GGTCAGAAGCGGGCATGG 60.826 66.667 0.00 0.00 0.00 3.66
454 455 2.825836 GTCAGAAGCGGGCATGGG 60.826 66.667 0.00 0.00 0.00 4.00
455 456 3.008517 TCAGAAGCGGGCATGGGA 61.009 61.111 0.00 0.00 0.00 4.37
456 457 2.194056 CAGAAGCGGGCATGGGAT 59.806 61.111 0.00 0.00 0.00 3.85
457 458 1.895707 CAGAAGCGGGCATGGGATC 60.896 63.158 0.00 0.00 0.00 3.36
458 459 2.974698 GAAGCGGGCATGGGATCG 60.975 66.667 0.00 0.00 0.00 3.69
459 460 4.569180 AAGCGGGCATGGGATCGG 62.569 66.667 0.00 0.00 0.00 4.18
461 462 4.875713 GCGGGCATGGGATCGGTT 62.876 66.667 0.00 0.00 0.00 4.44
462 463 2.591715 CGGGCATGGGATCGGTTC 60.592 66.667 0.00 0.00 0.00 3.62
463 464 2.591715 GGGCATGGGATCGGTTCG 60.592 66.667 0.00 0.00 0.00 3.95
464 465 2.504032 GGCATGGGATCGGTTCGA 59.496 61.111 0.00 0.00 41.13 3.71
465 466 1.153249 GGCATGGGATCGGTTCGAA 60.153 57.895 0.00 0.00 39.99 3.71
466 467 1.436983 GGCATGGGATCGGTTCGAAC 61.437 60.000 20.14 20.14 39.99 3.95
467 468 0.462047 GCATGGGATCGGTTCGAACT 60.462 55.000 26.32 8.28 39.99 3.01
468 469 1.571919 CATGGGATCGGTTCGAACTC 58.428 55.000 26.32 16.42 39.99 3.01
469 470 0.464452 ATGGGATCGGTTCGAACTCC 59.536 55.000 26.32 23.44 39.99 3.85
470 471 1.143401 GGGATCGGTTCGAACTCCC 59.857 63.158 28.46 28.46 44.39 4.30
471 472 1.226888 GGATCGGTTCGAACTCCCG 60.227 63.158 26.32 21.46 39.99 5.14
472 473 1.877165 GATCGGTTCGAACTCCCGC 60.877 63.158 26.32 9.58 39.99 6.13
473 474 2.552585 GATCGGTTCGAACTCCCGCA 62.553 60.000 26.32 12.66 39.99 5.69
474 475 2.162338 ATCGGTTCGAACTCCCGCAA 62.162 55.000 26.32 8.64 39.99 4.85
475 476 1.957186 CGGTTCGAACTCCCGCAAA 60.957 57.895 26.32 0.00 34.62 3.68
476 477 1.866925 GGTTCGAACTCCCGCAAAG 59.133 57.895 26.32 0.00 0.00 2.77
477 478 1.206831 GTTCGAACTCCCGCAAAGC 59.793 57.895 20.97 0.00 0.00 3.51
478 479 1.964373 TTCGAACTCCCGCAAAGCC 60.964 57.895 0.00 0.00 0.00 4.35
479 480 3.431725 CGAACTCCCGCAAAGCCC 61.432 66.667 0.00 0.00 0.00 5.19
480 481 3.062466 GAACTCCCGCAAAGCCCC 61.062 66.667 0.00 0.00 0.00 5.80
481 482 4.678743 AACTCCCGCAAAGCCCCC 62.679 66.667 0.00 0.00 0.00 5.40
536 608 4.717629 CGTTCGGACCGCTCTGCA 62.718 66.667 9.66 0.00 0.00 4.41
667 739 5.285401 TGTTAGATCTATTGTGGGGAAGGA 58.715 41.667 2.58 0.00 0.00 3.36
686 758 0.170339 ATCGACGATGCTCGACAACA 59.830 50.000 10.09 0.00 45.14 3.33
787 859 6.824305 AAATCAATCGAAAGACTTGGATGT 57.176 33.333 0.00 0.00 46.97 3.06
829 901 4.803613 GCCCTTGACTTTACACAAACAAAG 59.196 41.667 0.00 0.00 37.69 2.77
912 990 1.471829 GGTGAAGCCCCAAAACCCTG 61.472 60.000 0.00 0.00 0.00 4.45
916 994 2.023760 AAGCCCCAAAACCCTGCTCT 62.024 55.000 0.00 0.00 0.00 4.09
959 1037 2.386935 CCCAATCCCCTCCCCACTC 61.387 68.421 0.00 0.00 0.00 3.51
1172 1266 1.436336 CGTAAGAATCCGCGACCCT 59.564 57.895 8.23 0.00 43.02 4.34
1294 1390 0.621571 ACCTGCTCTTCTATGGCCCA 60.622 55.000 0.00 0.00 0.00 5.36
1460 1568 4.630894 TTTTCTGCTGACATTTTCGTGT 57.369 36.364 0.00 0.00 34.39 4.49
1467 1575 3.857093 GCTGACATTTTCGTGTGTTTTGT 59.143 39.130 0.00 0.00 31.16 2.83
1552 1660 1.821216 TTCAGCCCATCTCCGTTTTC 58.179 50.000 0.00 0.00 0.00 2.29
1646 1771 1.886542 CAGCTCATGTGGCATGCATAT 59.113 47.619 21.36 7.38 0.00 1.78
1689 1814 6.149308 CAGTTTGTGCTATTGGTGAACATAGA 59.851 38.462 0.00 0.00 0.00 1.98
1745 1870 4.888823 TGCCATTGCTGTGTATGTTGATAT 59.111 37.500 0.00 0.00 38.71 1.63
1746 1871 6.060788 TGCCATTGCTGTGTATGTTGATATA 58.939 36.000 0.00 0.00 38.71 0.86
1747 1872 6.205270 TGCCATTGCTGTGTATGTTGATATAG 59.795 38.462 0.00 0.00 38.71 1.31
1748 1873 6.605849 CCATTGCTGTGTATGTTGATATAGC 58.394 40.000 0.00 0.00 0.00 2.97
1749 1874 6.429078 CCATTGCTGTGTATGTTGATATAGCT 59.571 38.462 0.00 0.00 0.00 3.32
1750 1875 7.040892 CCATTGCTGTGTATGTTGATATAGCTT 60.041 37.037 0.00 0.00 0.00 3.74
1751 1876 8.992073 CATTGCTGTGTATGTTGATATAGCTTA 58.008 33.333 0.00 0.00 0.00 3.09
1752 1877 8.593492 TTGCTGTGTATGTTGATATAGCTTAG 57.407 34.615 0.00 0.00 0.00 2.18
1753 1878 7.951591 TGCTGTGTATGTTGATATAGCTTAGA 58.048 34.615 0.00 0.00 0.00 2.10
1754 1879 8.084684 TGCTGTGTATGTTGATATAGCTTAGAG 58.915 37.037 0.00 0.00 0.00 2.43
1755 1880 7.062839 GCTGTGTATGTTGATATAGCTTAGAGC 59.937 40.741 0.00 0.00 42.84 4.09
1773 1899 0.320697 GCCTTAGACTGTTCCGTGGT 59.679 55.000 0.00 0.00 0.00 4.16
1798 1924 0.036590 CCAAGTTGCCAATTTGGGGG 59.963 55.000 20.65 0.00 42.63 5.40
2009 2149 5.464168 CAAGAGAGCATTTAAAGGTTGGTG 58.536 41.667 1.37 0.00 0.00 4.17
2105 2256 2.035066 GCACCATTGTCTATTGCATCCC 59.965 50.000 0.00 0.00 33.24 3.85
2106 2257 2.624838 CACCATTGTCTATTGCATCCCC 59.375 50.000 0.00 0.00 0.00 4.81
2108 2259 2.889045 CCATTGTCTATTGCATCCCCTG 59.111 50.000 0.00 0.00 0.00 4.45
2109 2260 2.734755 TTGTCTATTGCATCCCCTGG 57.265 50.000 0.00 0.00 0.00 4.45
2110 2261 0.183492 TGTCTATTGCATCCCCTGGC 59.817 55.000 0.00 0.00 0.00 4.85
2111 2262 0.183492 GTCTATTGCATCCCCTGGCA 59.817 55.000 0.00 0.00 38.46 4.92
2112 2263 0.183492 TCTATTGCATCCCCTGGCAC 59.817 55.000 0.00 0.00 40.23 5.01
2113 2264 0.825010 CTATTGCATCCCCTGGCACC 60.825 60.000 0.00 0.00 40.23 5.01
2114 2265 1.579140 TATTGCATCCCCTGGCACCA 61.579 55.000 0.00 0.00 40.23 4.17
2115 2266 2.246513 ATTGCATCCCCTGGCACCAT 62.247 55.000 0.00 0.00 40.23 3.55
2116 2267 2.042639 GCATCCCCTGGCACCATT 60.043 61.111 0.00 0.00 0.00 3.16
2117 2268 2.428925 GCATCCCCTGGCACCATTG 61.429 63.158 0.00 0.00 0.00 2.82
2118 2269 1.000739 CATCCCCTGGCACCATTGT 59.999 57.895 0.00 0.00 0.00 2.71
2119 2270 1.039233 CATCCCCTGGCACCATTGTC 61.039 60.000 0.00 0.00 0.00 3.18
2120 2271 1.508667 ATCCCCTGGCACCATTGTCA 61.509 55.000 0.00 0.00 35.51 3.58
2125 2276 3.269578 TGGCACCATTGTCAGGATG 57.730 52.632 0.00 0.00 30.23 3.51
2158 2325 5.590259 CCCCTGGATGATTTACTTGTTACTG 59.410 44.000 0.00 0.00 0.00 2.74
2163 2330 6.116126 GGATGATTTACTTGTTACTGCCTCT 58.884 40.000 0.00 0.00 0.00 3.69
2166 2333 5.932303 TGATTTACTTGTTACTGCCTCTGTC 59.068 40.000 0.00 0.00 0.00 3.51
2167 2334 4.948341 TTACTTGTTACTGCCTCTGTCA 57.052 40.909 0.00 0.00 0.00 3.58
2169 2336 2.224305 ACTTGTTACTGCCTCTGTCACC 60.224 50.000 0.00 0.00 0.00 4.02
2170 2337 1.419381 TGTTACTGCCTCTGTCACCA 58.581 50.000 0.00 0.00 0.00 4.17
2171 2338 1.977854 TGTTACTGCCTCTGTCACCAT 59.022 47.619 0.00 0.00 0.00 3.55
2172 2339 2.371841 TGTTACTGCCTCTGTCACCATT 59.628 45.455 0.00 0.00 0.00 3.16
2173 2340 2.744202 GTTACTGCCTCTGTCACCATTG 59.256 50.000 0.00 0.00 0.00 2.82
2174 2341 0.767375 ACTGCCTCTGTCACCATTGT 59.233 50.000 0.00 0.00 0.00 2.71
2175 2342 1.271054 ACTGCCTCTGTCACCATTGTC 60.271 52.381 0.00 0.00 0.00 3.18
2176 2343 1.002888 CTGCCTCTGTCACCATTGTCT 59.997 52.381 0.00 0.00 0.00 3.41
2178 2345 2.840038 TGCCTCTGTCACCATTGTCTAT 59.160 45.455 0.00 0.00 0.00 1.98
2179 2346 3.264193 TGCCTCTGTCACCATTGTCTATT 59.736 43.478 0.00 0.00 0.00 1.73
2180 2347 3.624861 GCCTCTGTCACCATTGTCTATTG 59.375 47.826 0.00 0.00 0.00 1.90
2181 2348 3.624861 CCTCTGTCACCATTGTCTATTGC 59.375 47.826 0.00 0.00 0.00 3.56
2182 2349 4.256110 CTCTGTCACCATTGTCTATTGCA 58.744 43.478 0.00 0.00 0.00 4.08
2183 2350 4.002982 TCTGTCACCATTGTCTATTGCAC 58.997 43.478 0.00 0.00 0.00 4.57
2184 2351 3.081061 TGTCACCATTGTCTATTGCACC 58.919 45.455 0.00 0.00 0.00 5.01
2185 2352 2.423538 GTCACCATTGTCTATTGCACCC 59.576 50.000 0.00 0.00 0.00 4.61
2188 2355 2.308570 ACCATTGTCTATTGCACCCTGA 59.691 45.455 0.00 0.00 0.00 3.86
2189 2356 2.947652 CCATTGTCTATTGCACCCTGAG 59.052 50.000 0.00 0.00 0.00 3.35
2190 2357 3.370846 CCATTGTCTATTGCACCCTGAGA 60.371 47.826 0.00 0.00 0.00 3.27
2192 2359 3.548745 TGTCTATTGCACCCTGAGATG 57.451 47.619 0.00 0.00 0.00 2.90
2193 2360 3.106827 TGTCTATTGCACCCTGAGATGA 58.893 45.455 0.00 0.00 0.00 2.92
2194 2361 3.519107 TGTCTATTGCACCCTGAGATGAA 59.481 43.478 0.00 0.00 0.00 2.57
2195 2362 4.125703 GTCTATTGCACCCTGAGATGAAG 58.874 47.826 0.00 0.00 0.00 3.02
2196 2363 4.033009 TCTATTGCACCCTGAGATGAAGA 58.967 43.478 0.00 0.00 0.00 2.87
2197 2364 3.726557 ATTGCACCCTGAGATGAAGAA 57.273 42.857 0.00 0.00 0.00 2.52
2198 2365 3.726557 TTGCACCCTGAGATGAAGAAT 57.273 42.857 0.00 0.00 0.00 2.40
2199 2366 3.272574 TGCACCCTGAGATGAAGAATC 57.727 47.619 0.00 0.00 35.29 2.52
2200 2367 2.208431 GCACCCTGAGATGAAGAATCG 58.792 52.381 0.00 0.00 40.54 3.34
2201 2368 2.419297 GCACCCTGAGATGAAGAATCGT 60.419 50.000 0.00 0.00 40.54 3.73
2202 2369 3.452474 CACCCTGAGATGAAGAATCGTC 58.548 50.000 0.00 0.00 40.54 4.20
2203 2370 2.432510 ACCCTGAGATGAAGAATCGTCC 59.567 50.000 0.00 0.00 41.68 4.79
2204 2371 2.224161 CCCTGAGATGAAGAATCGTCCC 60.224 54.545 0.00 0.00 41.68 4.46
2205 2372 2.697751 CCTGAGATGAAGAATCGTCCCT 59.302 50.000 0.00 0.00 41.68 4.20
2206 2373 3.243704 CCTGAGATGAAGAATCGTCCCTC 60.244 52.174 8.06 8.06 41.68 4.30
2207 2374 3.636300 CTGAGATGAAGAATCGTCCCTCT 59.364 47.826 13.27 7.35 41.68 3.69
2208 2375 4.793201 TGAGATGAAGAATCGTCCCTCTA 58.207 43.478 13.27 2.78 41.68 2.43
2209 2376 5.389520 TGAGATGAAGAATCGTCCCTCTAT 58.610 41.667 13.27 0.00 41.68 1.98
2210 2377 6.543735 TGAGATGAAGAATCGTCCCTCTATA 58.456 40.000 13.27 0.80 41.68 1.31
2211 2378 6.431543 TGAGATGAAGAATCGTCCCTCTATAC 59.568 42.308 13.27 0.06 41.68 1.47
2212 2379 5.712917 AGATGAAGAATCGTCCCTCTATACC 59.287 44.000 0.00 0.00 41.68 2.73
2213 2380 4.800023 TGAAGAATCGTCCCTCTATACCA 58.200 43.478 0.00 0.00 0.00 3.25
2214 2381 5.394738 TGAAGAATCGTCCCTCTATACCAT 58.605 41.667 0.00 0.00 0.00 3.55
2215 2382 5.243954 TGAAGAATCGTCCCTCTATACCATG 59.756 44.000 0.00 0.00 0.00 3.66
2233 2400 6.362210 ACCATGAAATTGAACTGCAAAAAC 57.638 33.333 0.00 0.00 40.48 2.43
2315 2482 3.630769 ACAGATGATGCTATGCAAAGTGG 59.369 43.478 0.00 0.00 43.62 4.00
2322 2489 2.301346 GCTATGCAAAGTGGCCATACT 58.699 47.619 9.72 0.00 0.00 2.12
2323 2490 2.291741 GCTATGCAAAGTGGCCATACTC 59.708 50.000 9.72 0.00 0.00 2.59
2621 2788 8.076910 TGGATATTTGATGCCATTTTTACTGT 57.923 30.769 0.00 0.00 0.00 3.55
2679 2846 3.211865 TGGTCGGTGCTACTATGTCTAG 58.788 50.000 0.00 0.00 0.00 2.43
2717 2884 2.224992 TGCATGGGTTCCTTTGCTTCTA 60.225 45.455 14.00 0.00 35.48 2.10
2811 2982 2.081462 CGGGACTTTACCATGGTTGTC 58.919 52.381 25.38 25.04 0.00 3.18
3201 3393 2.747396 TCTCGCTTTTTACGCCCTTA 57.253 45.000 0.00 0.00 0.00 2.69
3233 3425 6.663734 ACATTTATCTGGTCTTCCCTTAAGG 58.336 40.000 15.14 15.14 35.75 2.69
3287 3479 3.815856 TTTTCAGCAAATCAAGTGGCA 57.184 38.095 0.00 0.00 0.00 4.92
3444 3638 8.870160 TTCATTTCCTGTTTACATGTTTTCAG 57.130 30.769 2.30 9.92 0.00 3.02
3446 3640 8.134895 TCATTTCCTGTTTACATGTTTTCAGTC 58.865 33.333 2.30 0.00 0.00 3.51
3478 3672 9.984190 TTTTAGTTACCACATATTTGTTTTCCC 57.016 29.630 0.00 0.00 32.34 3.97
3525 3719 0.836400 TTGTTCTCCCTCGAGCCCTT 60.836 55.000 6.99 0.00 35.94 3.95
3526 3720 1.219393 GTTCTCCCTCGAGCCCTTG 59.781 63.158 6.99 0.00 35.94 3.61
3548 3742 4.224433 GTTTCATGCATCATAATGGCTCG 58.776 43.478 0.00 0.00 33.19 5.03
3573 3767 3.653344 CCATCAGTGTATACCCATCGTG 58.347 50.000 0.00 0.00 0.00 4.35
3728 3922 7.428020 TGCATCTGCTTGGAATGTTATATTTC 58.572 34.615 3.53 0.00 42.66 2.17
3756 3950 3.055167 TGAGTCACACCATATGGAAGTGG 60.055 47.826 32.19 21.75 41.48 4.00
3810 4004 6.858993 TGTTACACACTTTTGTTCTTCACAAC 59.141 34.615 0.00 0.00 45.54 3.32
3844 4038 7.696992 TTAATTTTCCTTACATGGTGAGTCC 57.303 36.000 0.00 0.00 0.00 3.85
3865 4059 5.532779 GTCCTCTGAGACATTTTCTGGTTTT 59.467 40.000 6.17 0.00 36.73 2.43
3871 4065 7.068103 TCTGAGACATTTTCTGGTTTTGCTTTA 59.932 33.333 0.00 0.00 33.22 1.85
3991 4185 2.880268 TGAAGGTGACACAATGCTTCTG 59.120 45.455 17.64 0.00 0.00 3.02
4012 4206 4.870363 TGTTGCTGCTTTACCTTCATTTC 58.130 39.130 0.00 0.00 0.00 2.17
4242 4437 9.429359 CACAGTAGACTTTTCATGTTCTATCTT 57.571 33.333 0.00 0.00 0.00 2.40
4256 4451 9.979270 CATGTTCTATCTTCACTAATTTCACAC 57.021 33.333 0.00 0.00 0.00 3.82
4319 4514 7.391148 TGTATTTTCTTCCTTATTGGTGCTC 57.609 36.000 0.00 0.00 37.07 4.26
4320 4515 7.175104 TGTATTTTCTTCCTTATTGGTGCTCT 58.825 34.615 0.00 0.00 37.07 4.09
4321 4516 7.669722 TGTATTTTCTTCCTTATTGGTGCTCTT 59.330 33.333 0.00 0.00 37.07 2.85
4322 4517 6.976934 TTTTCTTCCTTATTGGTGCTCTTT 57.023 33.333 0.00 0.00 37.07 2.52
4443 4638 3.241067 GGTACATCTCGTGCACCTTTA 57.759 47.619 12.15 0.00 40.55 1.85
4475 4670 5.221880 GTGTGTTGTGCATAATGTTGTCAT 58.778 37.500 0.00 0.00 35.59 3.06
4622 4820 4.517952 AGAGTGTCATGTCTTCTCACAG 57.482 45.455 13.87 0.00 0.00 3.66
4655 4853 5.446143 TGGCACCATGTAACAAGTAAAAG 57.554 39.130 0.00 0.00 0.00 2.27
4691 4889 8.682710 TGATTGCACTATTAAAAACATAGGTCC 58.317 33.333 0.00 0.00 0.00 4.46
4744 4942 6.008960 ACTTTCTCTCAAAATGGAGCTTCAT 58.991 36.000 0.01 0.01 34.84 2.57
4777 4975 7.560368 ACAATCCTACAAATTGAACCAACAAA 58.440 30.769 0.00 0.00 37.51 2.83
4805 5003 6.552008 TGAAAAACTCCTTACAATCCTCCAT 58.448 36.000 0.00 0.00 0.00 3.41
4947 5145 2.599082 GTCGGTACTCAAAAGCTGATCG 59.401 50.000 0.00 0.00 32.14 3.69
5062 5261 4.081406 TGGTTGAGCAAAACAGAGCATAT 58.919 39.130 4.22 0.00 29.89 1.78
5097 5296 2.165998 GCAAGAAGATGCTCCCAGTTT 58.834 47.619 0.00 0.00 43.06 2.66
5114 5313 0.384309 TTTGCAGTCTCTGTCGTCGT 59.616 50.000 0.00 0.00 33.43 4.34
5118 5317 3.004862 TGCAGTCTCTGTCGTCGTAATA 58.995 45.455 0.00 0.00 33.43 0.98
5122 5321 3.556775 AGTCTCTGTCGTCGTAATAGCTC 59.443 47.826 0.00 0.00 0.00 4.09
5124 5323 4.744137 GTCTCTGTCGTCGTAATAGCTCTA 59.256 45.833 0.00 0.00 0.00 2.43
5335 5534 2.236489 ATGCCAACAGGGTGCTAAAT 57.764 45.000 0.00 0.00 39.65 1.40
5363 5562 6.786967 TCACTACCTCCTTTCTGGTTATAC 57.213 41.667 0.00 0.00 37.74 1.47
5369 5568 4.080299 CCTCCTTTCTGGTTATACAAGGCT 60.080 45.833 0.00 0.00 34.99 4.58
5370 5569 5.501156 CTCCTTTCTGGTTATACAAGGCTT 58.499 41.667 0.00 0.00 34.99 4.35
5371 5570 6.352737 CCTCCTTTCTGGTTATACAAGGCTTA 60.353 42.308 0.00 0.00 34.99 3.09
5485 5684 9.457110 CTGTTCTGATATGTGTTAGAGATACAC 57.543 37.037 0.00 0.00 44.73 2.90
5489 5688 6.981722 TGATATGTGTTAGAGATACACGCAT 58.018 36.000 0.00 3.34 46.85 4.73
5492 5691 4.421058 TGTGTTAGAGATACACGCATGAC 58.579 43.478 0.00 0.00 46.85 3.06
5496 5695 5.535030 TGTTAGAGATACACGCATGACCTAT 59.465 40.000 0.00 0.00 0.00 2.57
5497 5696 6.713450 TGTTAGAGATACACGCATGACCTATA 59.287 38.462 0.00 0.00 0.00 1.31
5509 5870 8.394877 CACGCATGACCTATAAAATTAGAAACA 58.605 33.333 0.00 0.00 0.00 2.83
5517 5878 8.914011 ACCTATAAAATTAGAAACAGGATTGCC 58.086 33.333 0.00 0.00 0.00 4.52
5528 5889 4.525912 ACAGGATTGCCAAATTTCAGTC 57.474 40.909 0.00 0.00 36.29 3.51
5531 5892 4.019174 AGGATTGCCAAATTTCAGTCGAT 58.981 39.130 0.00 0.00 36.29 3.59
5612 5976 7.061752 CCAAGACTTGGTTAAATCTTAGTCG 57.938 40.000 23.92 0.00 45.93 4.18
5613 5977 6.872020 CCAAGACTTGGTTAAATCTTAGTCGA 59.128 38.462 23.92 0.00 45.93 4.20
5614 5978 7.148623 CCAAGACTTGGTTAAATCTTAGTCGAC 60.149 40.741 23.92 7.70 45.93 4.20
5615 5979 7.229581 AGACTTGGTTAAATCTTAGTCGACT 57.770 36.000 23.66 23.66 37.62 4.18
5616 5980 7.091443 AGACTTGGTTAAATCTTAGTCGACTG 58.909 38.462 28.12 12.46 37.62 3.51
5617 5981 6.989659 ACTTGGTTAAATCTTAGTCGACTGA 58.010 36.000 28.12 19.13 0.00 3.41
5618 5982 7.091443 ACTTGGTTAAATCTTAGTCGACTGAG 58.909 38.462 26.80 26.80 0.00 3.35
5619 5983 6.829229 TGGTTAAATCTTAGTCGACTGAGA 57.171 37.500 33.88 33.88 41.83 3.27
5621 5985 7.481642 TGGTTAAATCTTAGTCGACTGAGATC 58.518 38.462 37.96 28.60 45.13 2.75
5622 5986 7.339721 TGGTTAAATCTTAGTCGACTGAGATCT 59.660 37.037 37.96 31.39 45.13 2.75
5643 6007 3.386932 AGCCATGCCCAATTAGAAAGA 57.613 42.857 0.00 0.00 0.00 2.52
5656 6020 7.834181 CCCAATTAGAAAGAAGGGAGTAAATCA 59.166 37.037 0.00 0.00 38.60 2.57
5665 6029 8.525290 AAGAAGGGAGTAAATCATAACAATGG 57.475 34.615 0.00 0.00 0.00 3.16
5722 6092 9.857656 ATGACATCAATGTATTCCATTTACTCT 57.142 29.630 0.00 0.00 41.93 3.24
5723 6093 9.330063 TGACATCAATGTATTCCATTTACTCTC 57.670 33.333 0.00 0.00 41.93 3.20
5724 6094 9.553064 GACATCAATGTATTCCATTTACTCTCT 57.447 33.333 0.00 0.00 41.93 3.10
5725 6095 9.553064 ACATCAATGTATTCCATTTACTCTCTC 57.447 33.333 0.00 0.00 41.93 3.20
5726 6096 8.997323 CATCAATGTATTCCATTTACTCTCTCC 58.003 37.037 0.00 0.00 41.93 3.71
5727 6097 7.210174 TCAATGTATTCCATTTACTCTCTCCG 58.790 38.462 0.00 0.00 41.93 4.63
5728 6098 6.732896 ATGTATTCCATTTACTCTCTCCGT 57.267 37.500 0.00 0.00 0.00 4.69
5729 6099 6.540438 TGTATTCCATTTACTCTCTCCGTT 57.460 37.500 0.00 0.00 0.00 4.44
5730 6100 6.942976 TGTATTCCATTTACTCTCTCCGTTT 58.057 36.000 0.00 0.00 0.00 3.60
5731 6101 7.039882 TGTATTCCATTTACTCTCTCCGTTTC 58.960 38.462 0.00 0.00 0.00 2.78
5732 6102 4.467198 TCCATTTACTCTCTCCGTTTCC 57.533 45.455 0.00 0.00 0.00 3.13
5733 6103 4.094476 TCCATTTACTCTCTCCGTTTCCT 58.906 43.478 0.00 0.00 0.00 3.36
5734 6104 5.266788 TCCATTTACTCTCTCCGTTTCCTA 58.733 41.667 0.00 0.00 0.00 2.94
5735 6105 5.718130 TCCATTTACTCTCTCCGTTTCCTAA 59.282 40.000 0.00 0.00 0.00 2.69
5736 6106 6.383147 TCCATTTACTCTCTCCGTTTCCTAAT 59.617 38.462 0.00 0.00 0.00 1.73
5737 6107 7.562454 TCCATTTACTCTCTCCGTTTCCTAATA 59.438 37.037 0.00 0.00 0.00 0.98
5738 6108 8.368668 CCATTTACTCTCTCCGTTTCCTAATAT 58.631 37.037 0.00 0.00 0.00 1.28
5742 6112 9.857656 TTACTCTCTCCGTTTCCTAATATAAGA 57.142 33.333 0.00 0.00 0.00 2.10
5743 6113 8.168790 ACTCTCTCCGTTTCCTAATATAAGAC 57.831 38.462 0.00 0.00 0.00 3.01
5744 6114 7.231115 ACTCTCTCCGTTTCCTAATATAAGACC 59.769 40.741 0.00 0.00 0.00 3.85
5745 6115 7.296098 TCTCTCCGTTTCCTAATATAAGACCT 58.704 38.462 0.00 0.00 0.00 3.85
5746 6116 7.783596 TCTCTCCGTTTCCTAATATAAGACCTT 59.216 37.037 0.00 0.00 0.00 3.50
5747 6117 8.315220 TCTCCGTTTCCTAATATAAGACCTTT 57.685 34.615 0.00 0.00 0.00 3.11
5748 6118 8.765517 TCTCCGTTTCCTAATATAAGACCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
5751 6121 8.771766 CCGTTTCCTAATATAAGACCTTTTAGC 58.228 37.037 0.00 0.00 0.00 3.09
5752 6122 9.543783 CGTTTCCTAATATAAGACCTTTTAGCT 57.456 33.333 0.00 0.00 0.00 3.32
5791 6161 9.847224 TGACTACATACATACTAAGATGAGTGA 57.153 33.333 0.00 0.00 0.00 3.41
5811 6181 9.719355 TGAGTGAACATACATACTAAAATGTGT 57.281 29.630 0.00 0.00 40.29 3.72
5845 6215 8.496707 ACAAATCAAGAAAAAGCAAAATGTCT 57.503 26.923 0.00 0.00 0.00 3.41
5846 6216 8.949177 ACAAATCAAGAAAAAGCAAAATGTCTT 58.051 25.926 0.00 0.00 0.00 3.01
5857 6227 8.499403 AAAGCAAAATGTCTTATACTCTCTCC 57.501 34.615 0.00 0.00 0.00 3.71
5858 6228 6.276847 AGCAAAATGTCTTATACTCTCTCCG 58.723 40.000 0.00 0.00 0.00 4.63
5859 6229 6.043411 GCAAAATGTCTTATACTCTCTCCGT 58.957 40.000 0.00 0.00 0.00 4.69
5860 6230 6.199342 GCAAAATGTCTTATACTCTCTCCGTC 59.801 42.308 0.00 0.00 0.00 4.79
5861 6231 6.394025 AAATGTCTTATACTCTCTCCGTCC 57.606 41.667 0.00 0.00 0.00 4.79
5862 6232 3.818180 TGTCTTATACTCTCTCCGTCCC 58.182 50.000 0.00 0.00 0.00 4.46
5863 6233 3.201487 TGTCTTATACTCTCTCCGTCCCA 59.799 47.826 0.00 0.00 0.00 4.37
5864 6234 4.205587 GTCTTATACTCTCTCCGTCCCAA 58.794 47.826 0.00 0.00 0.00 4.12
5865 6235 4.643784 GTCTTATACTCTCTCCGTCCCAAA 59.356 45.833 0.00 0.00 0.00 3.28
5866 6236 5.126707 GTCTTATACTCTCTCCGTCCCAAAA 59.873 44.000 0.00 0.00 0.00 2.44
5867 6237 5.897824 TCTTATACTCTCTCCGTCCCAAAAT 59.102 40.000 0.00 0.00 0.00 1.82
5868 6238 7.014038 GTCTTATACTCTCTCCGTCCCAAAATA 59.986 40.741 0.00 0.00 0.00 1.40
5869 6239 7.562454 TCTTATACTCTCTCCGTCCCAAAATAA 59.438 37.037 0.00 0.00 0.00 1.40
5870 6240 4.473477 ACTCTCTCCGTCCCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
5871 6241 3.838903 ACTCTCTCCGTCCCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
5872 6242 4.184629 CTCTCTCCGTCCCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
5873 6243 3.581332 TCTCTCCGTCCCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
5874 6244 3.933332 CTCTCCGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
5875 6245 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
5876 6246 4.041198 TCTCCGTCCCAAAATAAGTGTCTT 59.959 41.667 0.00 0.00 0.00 3.01
5877 6247 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
5878 6248 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
5879 6249 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
5880 6250 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
5881 6251 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
5882 6252 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
5883 6253 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
5884 6254 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
5885 6255 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
5886 6256 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
5887 6257 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
5888 6258 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
5889 6259 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
5890 6260 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
5891 6261 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
5892 6262 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
5893 6263 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
5894 6264 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
5895 6265 6.578919 GTGTCTTGAGCTTAGTACAAATTTGC 59.421 38.462 18.12 2.93 0.00 3.68
5896 6266 6.262049 TGTCTTGAGCTTAGTACAAATTTGCA 59.738 34.615 18.12 2.00 0.00 4.08
5897 6267 7.040478 TGTCTTGAGCTTAGTACAAATTTGCAT 60.040 33.333 18.12 6.83 0.00 3.96
5898 6268 7.809806 GTCTTGAGCTTAGTACAAATTTGCATT 59.190 33.333 18.12 4.87 0.00 3.56
5899 6269 9.008965 TCTTGAGCTTAGTACAAATTTGCATTA 57.991 29.630 18.12 3.84 0.00 1.90
5900 6270 9.282247 CTTGAGCTTAGTACAAATTTGCATTAG 57.718 33.333 18.12 10.07 0.00 1.73
5901 6271 8.560355 TGAGCTTAGTACAAATTTGCATTAGA 57.440 30.769 18.12 0.00 0.00 2.10
5902 6272 8.668353 TGAGCTTAGTACAAATTTGCATTAGAG 58.332 33.333 18.12 10.11 0.00 2.43
5903 6273 7.475840 AGCTTAGTACAAATTTGCATTAGAGC 58.524 34.615 18.12 17.96 0.00 4.09
5904 6274 7.337942 AGCTTAGTACAAATTTGCATTAGAGCT 59.662 33.333 18.12 19.59 34.99 4.09
5905 6275 8.612619 GCTTAGTACAAATTTGCATTAGAGCTA 58.387 33.333 18.12 6.37 34.99 3.32
5916 6286 9.793252 ATTTGCATTAGAGCTAATACAAAGTTG 57.207 29.630 22.82 6.75 44.89 3.16
5917 6287 8.560355 TTGCATTAGAGCTAATACAAAGTTGA 57.440 30.769 11.56 0.00 36.44 3.18
5918 6288 8.201554 TGCATTAGAGCTAATACAAAGTTGAG 57.798 34.615 2.65 0.00 34.27 3.02
5919 6289 8.040727 TGCATTAGAGCTAATACAAAGTTGAGA 58.959 33.333 2.65 0.00 34.27 3.27
5920 6290 8.331742 GCATTAGAGCTAATACAAAGTTGAGAC 58.668 37.037 2.65 0.00 34.27 3.36
5921 6291 9.371136 CATTAGAGCTAATACAAAGTTGAGACA 57.629 33.333 2.65 0.00 34.27 3.41
5922 6292 8.758633 TTAGAGCTAATACAAAGTTGAGACAC 57.241 34.615 0.00 0.00 0.00 3.67
5923 6293 6.998802 AGAGCTAATACAAAGTTGAGACACT 58.001 36.000 0.00 0.00 0.00 3.55
5924 6294 7.445945 AGAGCTAATACAAAGTTGAGACACTT 58.554 34.615 0.00 0.00 38.74 3.16
5925 6295 8.585881 AGAGCTAATACAAAGTTGAGACACTTA 58.414 33.333 0.00 0.00 35.87 2.24
5926 6296 9.372369 GAGCTAATACAAAGTTGAGACACTTAT 57.628 33.333 0.00 0.00 35.87 1.73
5927 6297 9.726438 AGCTAATACAAAGTTGAGACACTTATT 57.274 29.630 0.00 0.00 35.87 1.40
5933 6303 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
5934 6304 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
5935 6305 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
5936 6306 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
5937 6307 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
5938 6308 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
5952 6322 2.442236 ACGGAGTATTAGGGAACGGA 57.558 50.000 0.00 0.00 41.94 4.69
5953 6323 2.305009 ACGGAGTATTAGGGAACGGAG 58.695 52.381 0.00 0.00 41.94 4.63
5954 6324 1.612463 CGGAGTATTAGGGAACGGAGG 59.388 57.143 0.00 0.00 0.00 4.30
5955 6325 1.969208 GGAGTATTAGGGAACGGAGGG 59.031 57.143 0.00 0.00 0.00 4.30
5956 6326 2.425392 GGAGTATTAGGGAACGGAGGGA 60.425 54.545 0.00 0.00 0.00 4.20
5957 6327 2.892215 GAGTATTAGGGAACGGAGGGAG 59.108 54.545 0.00 0.00 0.00 4.30
5958 6328 1.969208 GTATTAGGGAACGGAGGGAGG 59.031 57.143 0.00 0.00 0.00 4.30
5959 6329 0.400093 ATTAGGGAACGGAGGGAGGG 60.400 60.000 0.00 0.00 0.00 4.30
5960 6330 2.540842 TTAGGGAACGGAGGGAGGGG 62.541 65.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.000727 CCACTTGTACATCGAGGTTTCC 58.999 50.000 8.51 0.00 32.04 3.13
31 32 1.600636 CACGCCCTTTTCCAGCTGA 60.601 57.895 17.39 0.00 0.00 4.26
37 38 1.239296 GGTGTACCACGCCCTTTTCC 61.239 60.000 0.00 0.00 42.80 3.13
121 122 1.055040 CATCTCCCTCCACATCTCCC 58.945 60.000 0.00 0.00 0.00 4.30
122 123 2.094100 TCATCTCCCTCCACATCTCC 57.906 55.000 0.00 0.00 0.00 3.71
155 156 1.867363 GCTTCCTCCTCCTCCTTGTA 58.133 55.000 0.00 0.00 0.00 2.41
172 173 2.809601 GGCGTCGTTCACATCGCT 60.810 61.111 12.94 0.00 46.37 4.93
189 190 2.520979 GACTATATAAGCCGCGCTCTG 58.479 52.381 5.56 0.00 38.25 3.35
198 199 2.417515 GCCTGGCCTCGACTATATAAGC 60.418 54.545 7.66 0.00 0.00 3.09
241 242 1.297158 CGCTACGCTGCATTGAAGC 60.297 57.895 6.56 6.56 37.31 3.86
265 266 2.084546 CAGATTTCCGAGGAACCAACC 58.915 52.381 3.71 0.00 33.41 3.77
365 366 1.626654 GCACACGGAGGTCGACATTG 61.627 60.000 18.91 8.40 42.43 2.82
370 371 2.212900 CTGATGCACACGGAGGTCGA 62.213 60.000 0.00 0.00 42.43 4.20
417 418 1.268625 CCGCCCTAACTCACCAAAAAC 59.731 52.381 0.00 0.00 0.00 2.43
418 419 1.133730 ACCGCCCTAACTCACCAAAAA 60.134 47.619 0.00 0.00 0.00 1.94
419 420 0.475044 ACCGCCCTAACTCACCAAAA 59.525 50.000 0.00 0.00 0.00 2.44
420 421 0.035739 GACCGCCCTAACTCACCAAA 59.964 55.000 0.00 0.00 0.00 3.28
421 422 1.122632 TGACCGCCCTAACTCACCAA 61.123 55.000 0.00 0.00 0.00 3.67
422 423 1.534476 TGACCGCCCTAACTCACCA 60.534 57.895 0.00 0.00 0.00 4.17
423 424 1.218316 CTGACCGCCCTAACTCACC 59.782 63.158 0.00 0.00 0.00 4.02
424 425 0.606604 TTCTGACCGCCCTAACTCAC 59.393 55.000 0.00 0.00 0.00 3.51
425 426 0.895530 CTTCTGACCGCCCTAACTCA 59.104 55.000 0.00 0.00 0.00 3.41
426 427 0.460459 GCTTCTGACCGCCCTAACTC 60.460 60.000 0.00 0.00 0.00 3.01
427 428 1.597461 GCTTCTGACCGCCCTAACT 59.403 57.895 0.00 0.00 0.00 2.24
428 429 1.810030 CGCTTCTGACCGCCCTAAC 60.810 63.158 0.00 0.00 0.00 2.34
429 430 2.577059 CGCTTCTGACCGCCCTAA 59.423 61.111 0.00 0.00 0.00 2.69
430 431 3.458163 CCGCTTCTGACCGCCCTA 61.458 66.667 0.00 0.00 0.00 3.53
435 436 3.197790 CATGCCCGCTTCTGACCG 61.198 66.667 0.00 0.00 0.00 4.79
436 437 2.825836 CCATGCCCGCTTCTGACC 60.826 66.667 0.00 0.00 0.00 4.02
437 438 2.615227 ATCCCATGCCCGCTTCTGAC 62.615 60.000 0.00 0.00 0.00 3.51
438 439 2.329539 GATCCCATGCCCGCTTCTGA 62.330 60.000 0.00 0.00 0.00 3.27
439 440 1.895707 GATCCCATGCCCGCTTCTG 60.896 63.158 0.00 0.00 0.00 3.02
440 441 2.512896 GATCCCATGCCCGCTTCT 59.487 61.111 0.00 0.00 0.00 2.85
441 442 2.974698 CGATCCCATGCCCGCTTC 60.975 66.667 0.00 0.00 0.00 3.86
442 443 4.569180 CCGATCCCATGCCCGCTT 62.569 66.667 0.00 0.00 0.00 4.68
444 445 4.875713 AACCGATCCCATGCCCGC 62.876 66.667 0.00 0.00 0.00 6.13
445 446 2.591715 GAACCGATCCCATGCCCG 60.592 66.667 0.00 0.00 0.00 6.13
446 447 2.591715 CGAACCGATCCCATGCCC 60.592 66.667 0.00 0.00 0.00 5.36
447 448 1.153249 TTCGAACCGATCCCATGCC 60.153 57.895 0.00 0.00 35.23 4.40
448 449 0.462047 AGTTCGAACCGATCCCATGC 60.462 55.000 24.22 0.00 35.23 4.06
449 450 1.571919 GAGTTCGAACCGATCCCATG 58.428 55.000 24.22 0.00 35.23 3.66
450 451 0.464452 GGAGTTCGAACCGATCCCAT 59.536 55.000 24.22 3.25 35.23 4.00
451 452 1.895238 GGAGTTCGAACCGATCCCA 59.105 57.895 24.22 0.00 35.23 4.37
452 453 1.143401 GGGAGTTCGAACCGATCCC 59.857 63.158 28.46 28.46 44.39 3.85
453 454 4.829588 GGGAGTTCGAACCGATCC 57.170 61.111 24.22 22.46 35.18 3.36
458 459 1.866925 CTTTGCGGGAGTTCGAACC 59.133 57.895 24.22 15.24 0.00 3.62
459 460 1.206831 GCTTTGCGGGAGTTCGAAC 59.793 57.895 20.71 20.71 0.00 3.95
460 461 1.964373 GGCTTTGCGGGAGTTCGAA 60.964 57.895 0.00 0.00 0.00 3.71
461 462 2.358247 GGCTTTGCGGGAGTTCGA 60.358 61.111 0.00 0.00 0.00 3.71
462 463 3.431725 GGGCTTTGCGGGAGTTCG 61.432 66.667 0.00 0.00 0.00 3.95
463 464 3.062466 GGGGCTTTGCGGGAGTTC 61.062 66.667 0.00 0.00 0.00 3.01
464 465 4.678743 GGGGGCTTTGCGGGAGTT 62.679 66.667 0.00 0.00 0.00 3.01
482 483 1.002502 GGAGACAAACGGAAGGGGG 60.003 63.158 0.00 0.00 0.00 5.40
483 484 1.375523 CGGAGACAAACGGAAGGGG 60.376 63.158 0.00 0.00 0.00 4.79
484 485 4.278956 CGGAGACAAACGGAAGGG 57.721 61.111 0.00 0.00 0.00 3.95
490 491 1.083015 CGCAAACCGGAGACAAACG 60.083 57.895 9.46 0.00 0.00 3.60
533 605 0.249031 CGAGCATGTATCGGTCTGCA 60.249 55.000 12.84 0.00 37.09 4.41
536 608 1.008424 CGCGAGCATGTATCGGTCT 60.008 57.895 19.50 0.00 40.50 3.85
639 711 5.491078 TCCCCACAATAGATCTAACAACCTT 59.509 40.000 6.52 0.00 0.00 3.50
773 845 7.672983 TCATGAAAGTACATCCAAGTCTTTC 57.327 36.000 0.00 0.00 42.10 2.62
787 859 5.324409 AGGGCTCAAATGTTCATGAAAGTA 58.676 37.500 10.35 0.03 0.00 2.24
829 901 2.829120 TGCCCAAAATTTAGTGCCCTAC 59.171 45.455 0.00 0.00 0.00 3.18
951 1029 1.850755 GGGAACTTGGGAGTGGGGA 60.851 63.158 0.00 0.00 35.91 4.81
954 1032 2.359975 GCGGGAACTTGGGAGTGG 60.360 66.667 0.00 0.00 35.91 4.00
959 1037 2.359975 GACTGGCGGGAACTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
1172 1266 3.208592 AGTGGTCTGGGGAGGGGA 61.209 66.667 0.00 0.00 0.00 4.81
1212 1308 2.735663 GTCAGAACAGATCAGCACACAG 59.264 50.000 0.00 0.00 0.00 3.66
1460 1568 1.272490 TGCAACGGAACCAACAAAACA 59.728 42.857 0.00 0.00 0.00 2.83
1467 1575 0.394488 TTCACCTGCAACGGAACCAA 60.394 50.000 0.00 0.00 0.00 3.67
1552 1660 4.780815 TGCAATAGTGACCATAAGAAGGG 58.219 43.478 0.00 0.00 0.00 3.95
1663 1788 3.317711 TGTTCACCAATAGCACAAACTGG 59.682 43.478 0.00 0.00 0.00 4.00
1689 1814 4.508551 TTCCTATCATGGTGCATCAGTT 57.491 40.909 5.59 0.00 0.00 3.16
1745 1870 4.645588 GGAACAGTCTAAGGCTCTAAGCTA 59.354 45.833 0.00 0.00 41.99 3.32
1746 1871 3.449377 GGAACAGTCTAAGGCTCTAAGCT 59.551 47.826 0.00 0.00 41.99 3.74
1747 1872 3.735514 CGGAACAGTCTAAGGCTCTAAGC 60.736 52.174 0.00 0.00 41.46 3.09
1748 1873 3.444388 ACGGAACAGTCTAAGGCTCTAAG 59.556 47.826 0.00 0.00 0.00 2.18
1749 1874 3.192844 CACGGAACAGTCTAAGGCTCTAA 59.807 47.826 0.00 0.00 0.00 2.10
1750 1875 2.753452 CACGGAACAGTCTAAGGCTCTA 59.247 50.000 0.00 0.00 0.00 2.43
1751 1876 1.546476 CACGGAACAGTCTAAGGCTCT 59.454 52.381 0.00 0.00 0.00 4.09
1752 1877 1.404315 CCACGGAACAGTCTAAGGCTC 60.404 57.143 0.00 0.00 0.00 4.70
1753 1878 0.608640 CCACGGAACAGTCTAAGGCT 59.391 55.000 0.00 0.00 0.00 4.58
1754 1879 0.320697 ACCACGGAACAGTCTAAGGC 59.679 55.000 0.00 0.00 0.00 4.35
1755 1880 1.343465 ACACCACGGAACAGTCTAAGG 59.657 52.381 0.00 0.00 0.00 2.69
1773 1899 4.262808 CCCAAATTGGCAACTTGGATAACA 60.263 41.667 34.84 0.00 40.85 2.41
1798 1924 4.199310 TGCACCTCAATTTCATAGCTACC 58.801 43.478 0.00 0.00 0.00 3.18
2009 2149 9.980780 GAGAGTTATAAGAACAAAATCAGAAGC 57.019 33.333 0.00 0.00 0.00 3.86
2105 2256 0.033796 ATCCTGACAATGGTGCCAGG 60.034 55.000 2.90 2.90 45.63 4.45
2106 2257 1.100510 CATCCTGACAATGGTGCCAG 58.899 55.000 0.00 0.00 0.00 4.85
2108 2259 2.062971 ATCATCCTGACAATGGTGCC 57.937 50.000 0.00 0.00 0.00 5.01
2109 2260 4.641989 AGTAAATCATCCTGACAATGGTGC 59.358 41.667 0.00 0.00 0.00 5.01
2110 2261 6.183360 GGAAGTAAATCATCCTGACAATGGTG 60.183 42.308 0.00 0.00 31.87 4.17
2111 2262 5.888161 GGAAGTAAATCATCCTGACAATGGT 59.112 40.000 0.00 0.00 31.87 3.55
2112 2263 5.300286 GGGAAGTAAATCATCCTGACAATGG 59.700 44.000 0.00 0.00 34.66 3.16
2113 2264 5.300286 GGGGAAGTAAATCATCCTGACAATG 59.700 44.000 0.00 0.00 34.66 2.82
2114 2265 5.194537 AGGGGAAGTAAATCATCCTGACAAT 59.805 40.000 0.00 0.00 34.66 2.71
2115 2266 4.540099 AGGGGAAGTAAATCATCCTGACAA 59.460 41.667 0.00 0.00 34.66 3.18
2116 2267 4.080356 CAGGGGAAGTAAATCATCCTGACA 60.080 45.833 0.00 0.00 41.14 3.58
2117 2268 4.455606 CAGGGGAAGTAAATCATCCTGAC 58.544 47.826 0.00 0.00 41.14 3.51
2118 2269 3.459598 CCAGGGGAAGTAAATCATCCTGA 59.540 47.826 13.76 0.00 41.14 3.86
2119 2270 3.459598 TCCAGGGGAAGTAAATCATCCTG 59.540 47.826 0.00 0.00 39.72 3.86
2120 2271 3.747852 TCCAGGGGAAGTAAATCATCCT 58.252 45.455 0.00 0.00 34.66 3.24
2121 2272 4.104738 TCATCCAGGGGAAGTAAATCATCC 59.895 45.833 0.00 0.00 34.34 3.51
2122 2273 5.310409 TCATCCAGGGGAAGTAAATCATC 57.690 43.478 0.00 0.00 34.34 2.92
2123 2274 5.937492 ATCATCCAGGGGAAGTAAATCAT 57.063 39.130 0.00 0.00 34.34 2.45
2125 2276 7.290813 AGTAAATCATCCAGGGGAAGTAAATC 58.709 38.462 0.00 0.00 34.34 2.17
2126 2277 7.226059 AGTAAATCATCCAGGGGAAGTAAAT 57.774 36.000 0.00 0.00 34.34 1.40
2129 2280 5.491078 ACAAGTAAATCATCCAGGGGAAGTA 59.509 40.000 0.00 0.00 34.34 2.24
2130 2281 4.292306 ACAAGTAAATCATCCAGGGGAAGT 59.708 41.667 0.00 0.00 34.34 3.01
2132 2283 4.946160 ACAAGTAAATCATCCAGGGGAA 57.054 40.909 0.00 0.00 34.34 3.97
2134 2285 5.590259 CAGTAACAAGTAAATCATCCAGGGG 59.410 44.000 0.00 0.00 0.00 4.79
2135 2286 5.066505 GCAGTAACAAGTAAATCATCCAGGG 59.933 44.000 0.00 0.00 0.00 4.45
2136 2287 5.066505 GGCAGTAACAAGTAAATCATCCAGG 59.933 44.000 0.00 0.00 0.00 4.45
2166 2333 2.424601 CAGGGTGCAATAGACAATGGTG 59.575 50.000 0.00 0.00 0.00 4.17
2167 2334 2.308570 TCAGGGTGCAATAGACAATGGT 59.691 45.455 0.00 0.00 0.00 3.55
2169 2336 3.877559 TCTCAGGGTGCAATAGACAATG 58.122 45.455 0.00 0.00 0.00 2.82
2170 2337 4.164796 TCATCTCAGGGTGCAATAGACAAT 59.835 41.667 0.00 0.00 0.00 2.71
2171 2338 3.519107 TCATCTCAGGGTGCAATAGACAA 59.481 43.478 0.00 0.00 0.00 3.18
2172 2339 3.106827 TCATCTCAGGGTGCAATAGACA 58.893 45.455 0.00 0.00 0.00 3.41
2173 2340 3.827008 TCATCTCAGGGTGCAATAGAC 57.173 47.619 0.00 0.00 0.00 2.59
2174 2341 4.033009 TCTTCATCTCAGGGTGCAATAGA 58.967 43.478 0.00 0.00 0.00 1.98
2175 2342 4.412796 TCTTCATCTCAGGGTGCAATAG 57.587 45.455 0.00 0.00 0.00 1.73
2176 2343 4.842531 TTCTTCATCTCAGGGTGCAATA 57.157 40.909 0.00 0.00 0.00 1.90
2178 2345 3.614092 GATTCTTCATCTCAGGGTGCAA 58.386 45.455 0.00 0.00 0.00 4.08
2179 2346 2.419159 CGATTCTTCATCTCAGGGTGCA 60.419 50.000 0.00 0.00 0.00 4.57
2180 2347 2.208431 CGATTCTTCATCTCAGGGTGC 58.792 52.381 0.00 0.00 0.00 5.01
2181 2348 3.452474 GACGATTCTTCATCTCAGGGTG 58.548 50.000 0.00 0.00 0.00 4.61
2182 2349 2.432510 GGACGATTCTTCATCTCAGGGT 59.567 50.000 0.00 0.00 0.00 4.34
2183 2350 2.224161 GGGACGATTCTTCATCTCAGGG 60.224 54.545 0.00 0.00 0.00 4.45
2184 2351 2.697751 AGGGACGATTCTTCATCTCAGG 59.302 50.000 0.00 0.00 0.00 3.86
2185 2352 3.636300 AGAGGGACGATTCTTCATCTCAG 59.364 47.826 12.07 0.00 0.00 3.35
2188 2355 5.712917 GGTATAGAGGGACGATTCTTCATCT 59.287 44.000 0.00 3.65 0.00 2.90
2189 2356 5.477291 TGGTATAGAGGGACGATTCTTCATC 59.523 44.000 0.00 0.00 0.00 2.92
2190 2357 5.394738 TGGTATAGAGGGACGATTCTTCAT 58.605 41.667 0.00 0.00 0.00 2.57
2192 2359 5.477291 TCATGGTATAGAGGGACGATTCTTC 59.523 44.000 0.00 0.00 0.00 2.87
2193 2360 5.394738 TCATGGTATAGAGGGACGATTCTT 58.605 41.667 0.00 0.00 0.00 2.52
2194 2361 4.999310 TCATGGTATAGAGGGACGATTCT 58.001 43.478 0.00 0.00 0.00 2.40
2195 2362 5.723672 TTCATGGTATAGAGGGACGATTC 57.276 43.478 0.00 0.00 0.00 2.52
2196 2363 6.688073 ATTTCATGGTATAGAGGGACGATT 57.312 37.500 0.00 0.00 0.00 3.34
2197 2364 6.270000 TCAATTTCATGGTATAGAGGGACGAT 59.730 38.462 0.00 0.00 0.00 3.73
2198 2365 5.600898 TCAATTTCATGGTATAGAGGGACGA 59.399 40.000 0.00 0.00 0.00 4.20
2199 2366 5.853936 TCAATTTCATGGTATAGAGGGACG 58.146 41.667 0.00 0.00 0.00 4.79
2200 2367 7.227512 CAGTTCAATTTCATGGTATAGAGGGAC 59.772 40.741 0.00 0.00 0.00 4.46
2201 2368 7.282585 CAGTTCAATTTCATGGTATAGAGGGA 58.717 38.462 0.00 0.00 0.00 4.20
2202 2369 6.016777 GCAGTTCAATTTCATGGTATAGAGGG 60.017 42.308 0.00 0.00 0.00 4.30
2203 2370 6.543465 TGCAGTTCAATTTCATGGTATAGAGG 59.457 38.462 0.00 0.00 0.00 3.69
2204 2371 7.558161 TGCAGTTCAATTTCATGGTATAGAG 57.442 36.000 0.00 0.00 0.00 2.43
2205 2372 7.936496 TTGCAGTTCAATTTCATGGTATAGA 57.064 32.000 0.00 0.00 0.00 1.98
2206 2373 8.984891 TTTTGCAGTTCAATTTCATGGTATAG 57.015 30.769 0.00 0.00 34.12 1.31
2207 2374 9.202273 GTTTTTGCAGTTCAATTTCATGGTATA 57.798 29.630 0.00 0.00 34.12 1.47
2208 2375 7.095691 CGTTTTTGCAGTTCAATTTCATGGTAT 60.096 33.333 0.00 0.00 34.12 2.73
2209 2376 6.199908 CGTTTTTGCAGTTCAATTTCATGGTA 59.800 34.615 0.00 0.00 34.12 3.25
2210 2377 5.006552 CGTTTTTGCAGTTCAATTTCATGGT 59.993 36.000 0.00 0.00 34.12 3.55
2211 2378 5.006552 ACGTTTTTGCAGTTCAATTTCATGG 59.993 36.000 0.00 0.00 34.12 3.66
2212 2379 6.019640 AGACGTTTTTGCAGTTCAATTTCATG 60.020 34.615 0.00 0.00 34.12 3.07
2213 2380 6.042143 AGACGTTTTTGCAGTTCAATTTCAT 58.958 32.000 0.00 0.00 34.12 2.57
2214 2381 5.406649 AGACGTTTTTGCAGTTCAATTTCA 58.593 33.333 0.00 0.00 34.12 2.69
2215 2382 5.949233 AGACGTTTTTGCAGTTCAATTTC 57.051 34.783 0.00 0.00 34.12 2.17
2621 2788 6.665992 AAGATCCACAACTGACACTAGTTA 57.334 37.500 0.00 0.00 38.78 2.24
2679 2846 4.298332 CATGCAAGTTTTGAACACCCTAC 58.702 43.478 0.00 0.00 0.00 3.18
2762 2933 6.389830 ACAGATGCAATTCACAACACTTAA 57.610 33.333 0.00 0.00 0.00 1.85
2804 2975 3.324846 ACATAGAGCAGTTCAGACAACCA 59.675 43.478 0.00 0.00 0.00 3.67
2811 2982 6.166279 TCAAACCTTACATAGAGCAGTTCAG 58.834 40.000 0.00 0.00 0.00 3.02
2908 3100 5.866075 CAGTATGCATGACTTCTTCAACTG 58.134 41.667 10.16 6.98 37.92 3.16
3201 3393 8.803235 GGGAAGACCAGATAAATGTAAAAACTT 58.197 33.333 0.00 0.00 39.85 2.66
3287 3479 0.907230 GCTCCCAGTCAAGAGGAGGT 60.907 60.000 7.36 0.00 46.14 3.85
3459 3653 8.929487 AGAAAAAGGGAAAACAAATATGTGGTA 58.071 29.630 0.00 0.00 40.46 3.25
3525 3719 4.261280 CGAGCCATTATGATGCATGAAACA 60.261 41.667 2.46 0.00 31.67 2.83
3526 3720 4.224433 CGAGCCATTATGATGCATGAAAC 58.776 43.478 2.46 0.00 31.67 2.78
3548 3742 0.602905 GGGTATACACTGATGGCCGC 60.603 60.000 5.01 0.00 0.00 6.53
3616 3810 0.461870 TGCTGGCCGCATGTAGTTAG 60.462 55.000 16.62 0.00 45.47 2.34
3684 3878 4.037222 TGCAGATCCATTACCACTCCTAA 58.963 43.478 0.00 0.00 0.00 2.69
3728 3922 4.132336 CCATATGGTGTGACTCAAGATGG 58.868 47.826 14.09 1.72 0.00 3.51
3730 3924 5.190528 ACTTCCATATGGTGTGACTCAAGAT 59.809 40.000 21.28 3.93 36.34 2.40
3736 3930 2.356125 GCCACTTCCATATGGTGTGACT 60.356 50.000 32.26 10.17 40.36 3.41
3756 3950 4.260784 CGAACCACCTAAAATAGCAGATGC 60.261 45.833 0.00 0.00 42.49 3.91
3836 4030 3.971245 AAATGTCTCAGAGGACTCACC 57.029 47.619 1.75 0.00 37.16 4.02
3844 4038 5.009410 AGCAAAACCAGAAAATGTCTCAGAG 59.991 40.000 0.00 0.00 32.70 3.35
3991 4185 5.126396 AGAAATGAAGGTAAAGCAGCAAC 57.874 39.130 0.00 0.00 0.00 4.17
4012 4206 3.623060 CACCCACATTAAAGGTCATCGAG 59.377 47.826 0.00 0.00 0.00 4.04
4167 4361 2.810488 AAATTGGCTGGGAGCTGGGG 62.810 60.000 0.00 0.00 41.99 4.96
4242 4437 7.176865 AGAGCTAGTACTGTGTGAAATTAGTGA 59.823 37.037 5.39 0.00 0.00 3.41
4443 4638 1.615883 TGCACAACACACCAGTTTGTT 59.384 42.857 0.00 0.00 36.35 2.83
4475 4670 2.869801 CACGCTAGACCAACAAGAAACA 59.130 45.455 0.00 0.00 0.00 2.83
4526 4721 8.918202 ATTAATGCCGATTATAACCAGAGAAA 57.082 30.769 0.00 0.00 0.00 2.52
4539 4737 5.746990 AGCTAGGTCTATTAATGCCGATT 57.253 39.130 0.00 0.00 0.00 3.34
4552 4750 3.008485 GGCAATAAGGCATAGCTAGGTCT 59.992 47.826 6.71 6.71 43.51 3.85
4622 4820 2.682856 ACATGGTGCCATCAAATCGTAC 59.317 45.455 0.00 0.00 33.90 3.67
4655 4853 5.424121 AATAGTGCAATCAAATCTACGGC 57.576 39.130 0.00 0.00 0.00 5.68
4726 4924 3.760151 CCACATGAAGCTCCATTTTGAGA 59.240 43.478 0.00 0.00 34.11 3.27
4744 4942 8.519526 GTTCAATTTGTAGGATTGTATTCCACA 58.480 33.333 0.00 0.00 38.32 4.17
4777 4975 9.190317 GGAGGATTGTAAGGAGTTTTTCATATT 57.810 33.333 0.00 0.00 0.00 1.28
4852 5050 7.716612 TGTACACAGATCTTGAGGTGTATATG 58.283 38.462 20.47 0.00 45.28 1.78
4858 5056 5.240891 ACAATGTACACAGATCTTGAGGTG 58.759 41.667 10.73 8.88 37.29 4.00
4925 5123 2.450609 TCAGCTTTTGAGTACCGACC 57.549 50.000 0.00 0.00 0.00 4.79
4947 5145 0.745845 ATGGGTGCAGACGAATCAGC 60.746 55.000 0.00 0.00 37.84 4.26
5097 5296 1.232119 TTACGACGACAGAGACTGCA 58.768 50.000 0.00 0.00 34.37 4.41
5114 5313 5.536538 CCCACACATCAGACTAGAGCTATTA 59.463 44.000 0.00 0.00 0.00 0.98
5118 5317 2.106566 CCCACACATCAGACTAGAGCT 58.893 52.381 0.00 0.00 0.00 4.09
5122 5321 0.807667 GCGCCCACACATCAGACTAG 60.808 60.000 0.00 0.00 0.00 2.57
5124 5323 2.046892 GCGCCCACACATCAGACT 60.047 61.111 0.00 0.00 0.00 3.24
5335 5534 5.529289 ACCAGAAAGGAGGTAGTGATATCA 58.471 41.667 0.00 0.00 41.22 2.15
5474 5673 7.754851 TTATAGGTCATGCGTGTATCTCTAA 57.245 36.000 5.68 3.53 0.00 2.10
5485 5684 8.070171 CCTGTTTCTAATTTTATAGGTCATGCG 58.930 37.037 0.00 0.00 0.00 4.73
5492 5691 8.912988 TGGCAATCCTGTTTCTAATTTTATAGG 58.087 33.333 0.00 0.00 0.00 2.57
5497 5696 8.922931 AATTTGGCAATCCTGTTTCTAATTTT 57.077 26.923 0.00 0.00 0.00 1.82
5509 5870 3.420893 TCGACTGAAATTTGGCAATCCT 58.579 40.909 0.00 0.00 0.00 3.24
5517 5878 6.958193 GCTAAGTCTCAATCGACTGAAATTTG 59.042 38.462 0.00 0.00 43.14 2.32
5541 5902 6.814506 ATATAGCATCAATTGAGACTTGGC 57.185 37.500 14.54 9.90 0.00 4.52
5589 5953 7.599245 AGTCGACTAAGATTTAACCAAGTCTTG 59.401 37.037 18.46 5.53 40.01 3.02
5594 5958 7.313646 TCTCAGTCGACTAAGATTTAACCAAG 58.686 38.462 19.57 0.26 0.00 3.61
5599 5963 8.561212 GCTAGATCTCAGTCGACTAAGATTTAA 58.439 37.037 28.06 16.87 31.22 1.52
5600 5964 7.173562 GGCTAGATCTCAGTCGACTAAGATTTA 59.826 40.741 28.06 24.57 31.22 1.40
5601 5965 6.016610 GGCTAGATCTCAGTCGACTAAGATTT 60.017 42.308 28.06 24.75 31.22 2.17
5602 5966 5.472137 GGCTAGATCTCAGTCGACTAAGATT 59.528 44.000 28.06 20.12 31.22 2.40
5603 5967 5.001232 GGCTAGATCTCAGTCGACTAAGAT 58.999 45.833 27.83 27.83 33.72 2.40
5604 5968 4.141688 TGGCTAGATCTCAGTCGACTAAGA 60.142 45.833 20.63 20.63 0.00 2.10
5605 5969 4.130857 TGGCTAGATCTCAGTCGACTAAG 58.869 47.826 19.57 14.47 0.00 2.18
5606 5970 4.152284 TGGCTAGATCTCAGTCGACTAA 57.848 45.455 19.57 1.94 0.00 2.24
5607 5971 3.840124 TGGCTAGATCTCAGTCGACTA 57.160 47.619 19.57 2.81 0.00 2.59
5608 5972 2.719531 TGGCTAGATCTCAGTCGACT 57.280 50.000 13.58 13.58 0.00 4.18
5609 5973 2.606795 GCATGGCTAGATCTCAGTCGAC 60.607 54.545 7.70 7.70 0.00 4.20
5610 5974 1.611006 GCATGGCTAGATCTCAGTCGA 59.389 52.381 0.00 0.00 0.00 4.20
5611 5975 1.336702 GGCATGGCTAGATCTCAGTCG 60.337 57.143 12.86 0.00 0.00 4.18
5612 5976 1.001860 GGGCATGGCTAGATCTCAGTC 59.998 57.143 19.78 0.00 0.00 3.51
5613 5977 1.055040 GGGCATGGCTAGATCTCAGT 58.945 55.000 19.78 0.00 0.00 3.41
5614 5978 1.054231 TGGGCATGGCTAGATCTCAG 58.946 55.000 19.78 0.00 0.00 3.35
5615 5979 1.510492 TTGGGCATGGCTAGATCTCA 58.490 50.000 19.78 3.53 0.00 3.27
5616 5980 2.875094 ATTGGGCATGGCTAGATCTC 57.125 50.000 19.78 0.61 0.00 2.75
5617 5981 3.912528 TCTAATTGGGCATGGCTAGATCT 59.087 43.478 19.78 0.00 0.00 2.75
5618 5982 4.292186 TCTAATTGGGCATGGCTAGATC 57.708 45.455 19.78 2.17 0.00 2.75
5619 5983 4.729552 TTCTAATTGGGCATGGCTAGAT 57.270 40.909 19.78 8.24 0.00 1.98
5620 5984 4.165950 TCTTTCTAATTGGGCATGGCTAGA 59.834 41.667 19.78 14.61 0.00 2.43
5621 5985 4.464008 TCTTTCTAATTGGGCATGGCTAG 58.536 43.478 19.78 12.51 0.00 3.42
5622 5986 4.518278 TCTTTCTAATTGGGCATGGCTA 57.482 40.909 19.78 10.80 0.00 3.93
5643 6007 9.762381 TTAACCATTGTTATGATTTACTCCCTT 57.238 29.630 0.00 0.00 36.84 3.95
5665 6029 5.285370 GCGCTTGGCTGTTTAAGTATTTAAC 59.715 40.000 0.00 0.00 39.11 2.01
5720 6090 7.296098 AGGTCTTATATTAGGAAACGGAGAGA 58.704 38.462 0.00 0.00 0.00 3.10
5721 6091 7.527568 AGGTCTTATATTAGGAAACGGAGAG 57.472 40.000 0.00 0.00 0.00 3.20
5722 6092 7.909485 AAGGTCTTATATTAGGAAACGGAGA 57.091 36.000 0.00 0.00 0.00 3.71
5723 6093 8.959705 AAAAGGTCTTATATTAGGAAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
5725 6095 8.771766 GCTAAAAGGTCTTATATTAGGAAACGG 58.228 37.037 0.00 0.00 0.00 4.44
5726 6096 9.543783 AGCTAAAAGGTCTTATATTAGGAAACG 57.456 33.333 0.00 0.00 0.00 3.60
5765 6135 9.847224 TCACTCATCTTAGTATGTATGTAGTCA 57.153 33.333 0.00 0.00 0.00 3.41
5785 6155 9.719355 ACACATTTTAGTATGTATGTTCACTCA 57.281 29.630 0.00 0.00 36.64 3.41
5819 6189 9.598517 AGACATTTTGCTTTTTCTTGATTTGTA 57.401 25.926 0.00 0.00 0.00 2.41
5820 6190 8.496707 AGACATTTTGCTTTTTCTTGATTTGT 57.503 26.923 0.00 0.00 0.00 2.83
5831 6201 8.951243 GGAGAGAGTATAAGACATTTTGCTTTT 58.049 33.333 0.00 0.00 0.00 2.27
5832 6202 7.278868 CGGAGAGAGTATAAGACATTTTGCTTT 59.721 37.037 0.00 0.00 0.00 3.51
5833 6203 6.758886 CGGAGAGAGTATAAGACATTTTGCTT 59.241 38.462 0.00 0.00 0.00 3.91
5834 6204 6.127310 ACGGAGAGAGTATAAGACATTTTGCT 60.127 38.462 0.00 0.00 0.00 3.91
5835 6205 6.043411 ACGGAGAGAGTATAAGACATTTTGC 58.957 40.000 0.00 0.00 0.00 3.68
5836 6206 6.697892 GGACGGAGAGAGTATAAGACATTTTG 59.302 42.308 0.00 0.00 0.00 2.44
5837 6207 6.183360 GGGACGGAGAGAGTATAAGACATTTT 60.183 42.308 0.00 0.00 0.00 1.82
5838 6208 5.302313 GGGACGGAGAGAGTATAAGACATTT 59.698 44.000 0.00 0.00 0.00 2.32
5839 6209 4.828387 GGGACGGAGAGAGTATAAGACATT 59.172 45.833 0.00 0.00 0.00 2.71
5840 6210 4.141228 TGGGACGGAGAGAGTATAAGACAT 60.141 45.833 0.00 0.00 0.00 3.06
5841 6211 3.201487 TGGGACGGAGAGAGTATAAGACA 59.799 47.826 0.00 0.00 0.00 3.41
5842 6212 3.818180 TGGGACGGAGAGAGTATAAGAC 58.182 50.000 0.00 0.00 0.00 3.01
5843 6213 4.515028 TTGGGACGGAGAGAGTATAAGA 57.485 45.455 0.00 0.00 0.00 2.10
5844 6214 5.593679 TTTTGGGACGGAGAGAGTATAAG 57.406 43.478 0.00 0.00 0.00 1.73
5845 6215 7.343833 ACTTATTTTGGGACGGAGAGAGTATAA 59.656 37.037 0.00 0.00 0.00 0.98
5846 6216 6.837568 ACTTATTTTGGGACGGAGAGAGTATA 59.162 38.462 0.00 0.00 0.00 1.47
5847 6217 5.661759 ACTTATTTTGGGACGGAGAGAGTAT 59.338 40.000 0.00 0.00 0.00 2.12
5848 6218 5.021458 ACTTATTTTGGGACGGAGAGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
5849 6219 3.838903 ACTTATTTTGGGACGGAGAGAGT 59.161 43.478 0.00 0.00 0.00 3.24
5850 6220 4.184629 CACTTATTTTGGGACGGAGAGAG 58.815 47.826 0.00 0.00 0.00 3.20
5851 6221 3.581332 ACACTTATTTTGGGACGGAGAGA 59.419 43.478 0.00 0.00 0.00 3.10
5852 6222 3.933332 GACACTTATTTTGGGACGGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
5853 6223 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
5854 6224 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
5855 6225 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
5856 6226 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
5857 6227 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
5858 6228 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
5859 6229 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
5860 6230 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
5861 6231 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
5862 6232 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
5863 6233 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
5864 6234 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
5865 6235 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
5866 6236 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
5867 6237 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
5868 6238 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
5869 6239 7.520614 GCAAATTTGTACTAAGCTCAAGACACT 60.521 37.037 19.03 0.00 0.00 3.55
5870 6240 6.578919 GCAAATTTGTACTAAGCTCAAGACAC 59.421 38.462 19.03 2.09 0.00 3.67
5871 6241 6.262049 TGCAAATTTGTACTAAGCTCAAGACA 59.738 34.615 19.03 0.60 0.00 3.41
5872 6242 6.668323 TGCAAATTTGTACTAAGCTCAAGAC 58.332 36.000 19.03 0.00 0.00 3.01
5873 6243 6.875948 TGCAAATTTGTACTAAGCTCAAGA 57.124 33.333 19.03 0.00 0.00 3.02
5874 6244 9.282247 CTAATGCAAATTTGTACTAAGCTCAAG 57.718 33.333 19.03 0.00 0.00 3.02
5875 6245 9.008965 TCTAATGCAAATTTGTACTAAGCTCAA 57.991 29.630 19.03 0.00 0.00 3.02
5876 6246 8.560355 TCTAATGCAAATTTGTACTAAGCTCA 57.440 30.769 19.03 6.00 0.00 4.26
5877 6247 7.641802 GCTCTAATGCAAATTTGTACTAAGCTC 59.358 37.037 19.03 0.40 0.00 4.09
5878 6248 7.337942 AGCTCTAATGCAAATTTGTACTAAGCT 59.662 33.333 20.99 20.99 34.99 3.74
5879 6249 7.475840 AGCTCTAATGCAAATTTGTACTAAGC 58.524 34.615 19.03 18.70 34.99 3.09
5893 6263 8.040727 TCTCAACTTTGTATTAGCTCTAATGCA 58.959 33.333 13.81 13.81 43.17 3.96
5894 6264 8.331742 GTCTCAACTTTGTATTAGCTCTAATGC 58.668 37.037 11.33 10.51 38.22 3.56
5895 6265 9.371136 TGTCTCAACTTTGTATTAGCTCTAATG 57.629 33.333 11.33 0.00 36.52 1.90
5896 6266 9.372369 GTGTCTCAACTTTGTATTAGCTCTAAT 57.628 33.333 7.25 7.25 39.02 1.73
5897 6267 8.585881 AGTGTCTCAACTTTGTATTAGCTCTAA 58.414 33.333 0.00 0.00 0.00 2.10
5898 6268 8.123639 AGTGTCTCAACTTTGTATTAGCTCTA 57.876 34.615 0.00 0.00 0.00 2.43
5899 6269 6.998802 AGTGTCTCAACTTTGTATTAGCTCT 58.001 36.000 0.00 0.00 0.00 4.09
5900 6270 7.659652 AAGTGTCTCAACTTTGTATTAGCTC 57.340 36.000 0.00 0.00 37.05 4.09
5901 6271 9.726438 AATAAGTGTCTCAACTTTGTATTAGCT 57.274 29.630 0.00 0.00 40.77 3.32
5907 6277 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
5908 6278 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
5909 6279 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
5910 6280 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
5911 6281 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
5912 6282 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
5913 6283 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
5914 6284 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
5915 6285 5.010719 ACTCCGTCTCAAAATAAGTGTCTCA 59.989 40.000 0.00 0.00 0.00 3.27
5916 6286 5.471257 ACTCCGTCTCAAAATAAGTGTCTC 58.529 41.667 0.00 0.00 0.00 3.36
5917 6287 5.470047 ACTCCGTCTCAAAATAAGTGTCT 57.530 39.130 0.00 0.00 0.00 3.41
5918 6288 7.829378 AATACTCCGTCTCAAAATAAGTGTC 57.171 36.000 0.00 0.00 0.00 3.67
5919 6289 7.980099 CCTAATACTCCGTCTCAAAATAAGTGT 59.020 37.037 0.00 0.00 0.00 3.55
5920 6290 7.438459 CCCTAATACTCCGTCTCAAAATAAGTG 59.562 40.741 0.00 0.00 0.00 3.16
5921 6291 7.343833 TCCCTAATACTCCGTCTCAAAATAAGT 59.656 37.037 0.00 0.00 0.00 2.24
5922 6292 7.723324 TCCCTAATACTCCGTCTCAAAATAAG 58.277 38.462 0.00 0.00 0.00 1.73
5923 6293 7.664552 TCCCTAATACTCCGTCTCAAAATAA 57.335 36.000 0.00 0.00 0.00 1.40
5924 6294 7.495055 GTTCCCTAATACTCCGTCTCAAAATA 58.505 38.462 0.00 0.00 0.00 1.40
5925 6295 6.346896 GTTCCCTAATACTCCGTCTCAAAAT 58.653 40.000 0.00 0.00 0.00 1.82
5926 6296 5.622914 CGTTCCCTAATACTCCGTCTCAAAA 60.623 44.000 0.00 0.00 0.00 2.44
5927 6297 4.142315 CGTTCCCTAATACTCCGTCTCAAA 60.142 45.833 0.00 0.00 0.00 2.69
5928 6298 3.379372 CGTTCCCTAATACTCCGTCTCAA 59.621 47.826 0.00 0.00 0.00 3.02
5929 6299 2.947652 CGTTCCCTAATACTCCGTCTCA 59.052 50.000 0.00 0.00 0.00 3.27
5930 6300 2.292845 CCGTTCCCTAATACTCCGTCTC 59.707 54.545 0.00 0.00 0.00 3.36
5931 6301 2.092212 TCCGTTCCCTAATACTCCGTCT 60.092 50.000 0.00 0.00 0.00 4.18
5932 6302 2.292845 CTCCGTTCCCTAATACTCCGTC 59.707 54.545 0.00 0.00 0.00 4.79
5933 6303 2.305009 CTCCGTTCCCTAATACTCCGT 58.695 52.381 0.00 0.00 0.00 4.69
5934 6304 1.612463 CCTCCGTTCCCTAATACTCCG 59.388 57.143 0.00 0.00 0.00 4.63
5935 6305 1.969208 CCCTCCGTTCCCTAATACTCC 59.031 57.143 0.00 0.00 0.00 3.85
5936 6306 2.892215 CTCCCTCCGTTCCCTAATACTC 59.108 54.545 0.00 0.00 0.00 2.59
5937 6307 2.425975 CCTCCCTCCGTTCCCTAATACT 60.426 54.545 0.00 0.00 0.00 2.12
5938 6308 1.969208 CCTCCCTCCGTTCCCTAATAC 59.031 57.143 0.00 0.00 0.00 1.89
5939 6309 1.132945 CCCTCCCTCCGTTCCCTAATA 60.133 57.143 0.00 0.00 0.00 0.98
5940 6310 0.400093 CCCTCCCTCCGTTCCCTAAT 60.400 60.000 0.00 0.00 0.00 1.73
5941 6311 1.002533 CCCTCCCTCCGTTCCCTAA 59.997 63.158 0.00 0.00 0.00 2.69
5942 6312 2.694305 CCCTCCCTCCGTTCCCTA 59.306 66.667 0.00 0.00 0.00 3.53
5943 6313 4.416601 CCCCTCCCTCCGTTCCCT 62.417 72.222 0.00 0.00 0.00 4.20
5944 6314 3.321901 TACCCCTCCCTCCGTTCCC 62.322 68.421 0.00 0.00 0.00 3.97
5945 6315 2.062777 GTACCCCTCCCTCCGTTCC 61.063 68.421 0.00 0.00 0.00 3.62
5946 6316 0.616964 AAGTACCCCTCCCTCCGTTC 60.617 60.000 0.00 0.00 0.00 3.95
5947 6317 0.712380 TAAGTACCCCTCCCTCCGTT 59.288 55.000 0.00 0.00 0.00 4.44
5948 6318 0.712380 TTAAGTACCCCTCCCTCCGT 59.288 55.000 0.00 0.00 0.00 4.69
5949 6319 1.692519 CATTAAGTACCCCTCCCTCCG 59.307 57.143 0.00 0.00 0.00 4.63
5950 6320 1.420514 GCATTAAGTACCCCTCCCTCC 59.579 57.143 0.00 0.00 0.00 4.30
5951 6321 2.124411 TGCATTAAGTACCCCTCCCTC 58.876 52.381 0.00 0.00 0.00 4.30
5952 6322 2.280308 TGCATTAAGTACCCCTCCCT 57.720 50.000 0.00 0.00 0.00 4.20
5953 6323 3.595190 AATGCATTAAGTACCCCTCCC 57.405 47.619 11.02 0.00 0.00 4.30
5954 6324 4.278310 ACAAATGCATTAAGTACCCCTCC 58.722 43.478 13.39 0.00 0.00 4.30
5955 6325 7.399245 TTTACAAATGCATTAAGTACCCCTC 57.601 36.000 13.39 0.00 0.00 4.30
5956 6326 7.781056 CATTTACAAATGCATTAAGTACCCCT 58.219 34.615 13.39 1.80 39.29 4.79
5991 6361 4.286707 TGTACATGTGTATAGACAGGCCT 58.713 43.478 13.91 0.00 35.82 5.19
6098 6469 5.489278 AGGCTTATCATTATCCTCCCTTACC 59.511 44.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.