Multiple sequence alignment - TraesCS5D01G437100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G437100 chr5D 100.000 5809 0 0 1 5809 491103858 491098050 0.000000e+00 10728.0
1 TraesCS5D01G437100 chr5D 83.085 603 81 13 1543 2136 491102041 491101451 3.990000e-146 529.0
2 TraesCS5D01G437100 chr5D 83.085 603 81 13 1818 2408 491102316 491101723 3.990000e-146 529.0
3 TraesCS5D01G437100 chr5D 86.014 143 18 1 1901 2041 491101450 491101308 1.010000e-32 152.0
4 TraesCS5D01G437100 chr5D 86.014 143 18 1 2409 2551 491101958 491101818 1.010000e-32 152.0
5 TraesCS5D01G437100 chr5D 86.232 138 13 6 2177 2313 491101440 491101308 1.690000e-30 145.0
6 TraesCS5D01G437100 chr5D 86.232 138 13 6 2419 2551 491101682 491101546 1.690000e-30 145.0
7 TraesCS5D01G437100 chr5D 86.614 127 17 0 1639 1765 491101434 491101308 2.180000e-29 141.0
8 TraesCS5D01G437100 chr5D 86.614 127 17 0 2425 2551 491102220 491102094 2.180000e-29 141.0
9 TraesCS5D01G437100 chr5B 89.446 2615 140 45 368 2908 605830330 605827778 0.000000e+00 3175.0
10 TraesCS5D01G437100 chr5B 91.524 991 54 13 3330 4319 605827386 605826425 0.000000e+00 1338.0
11 TraesCS5D01G437100 chr5B 92.117 685 33 6 5048 5715 605825522 605824842 0.000000e+00 946.0
12 TraesCS5D01G437100 chr5B 91.429 595 28 6 4318 4909 605826342 605825768 0.000000e+00 795.0
13 TraesCS5D01G437100 chr5B 82.702 607 75 14 1543 2136 605828871 605828282 4.010000e-141 512.0
14 TraesCS5D01G437100 chr5B 82.353 595 90 12 1818 2403 605829149 605828561 2.420000e-138 503.0
15 TraesCS5D01G437100 chr5B 93.125 320 20 2 2914 3231 605827691 605827372 8.810000e-128 468.0
16 TraesCS5D01G437100 chr5B 87.097 310 31 7 1556 1860 605828587 605828282 5.570000e-90 342.0
17 TraesCS5D01G437100 chr5B 89.209 139 9 6 2418 2551 605828514 605828377 1.000000e-37 169.0
18 TraesCS5D01G437100 chr5B 85.938 128 18 0 1638 1765 605828282 605828155 2.820000e-28 137.0
19 TraesCS5D01G437100 chr5B 85.039 127 19 0 2425 2551 605829050 605828924 4.720000e-26 130.0
20 TraesCS5D01G437100 chr5A 90.161 2490 138 37 337 2788 613548025 613545605 0.000000e+00 3142.0
21 TraesCS5D01G437100 chr5A 92.128 1931 109 19 2997 4914 613545255 613543355 0.000000e+00 2684.0
22 TraesCS5D01G437100 chr5A 90.600 883 56 10 4944 5809 613543356 613542484 0.000000e+00 1146.0
23 TraesCS5D01G437100 chr5A 83.193 595 80 13 1546 2133 613546565 613545984 1.430000e-145 527.0
24 TraesCS5D01G437100 chr5A 81.414 608 90 17 1818 2413 613546849 613546253 5.270000e-130 475.0
25 TraesCS5D01G437100 chr5A 86.452 310 32 8 1556 1857 613546291 613545984 1.210000e-86 331.0
26 TraesCS5D01G437100 chr5A 78.712 559 73 19 2036 2551 613546910 613546355 1.210000e-86 331.0
27 TraesCS5D01G437100 chr5A 94.309 123 7 0 2788 2910 613545575 613545453 7.680000e-44 189.0
28 TraesCS5D01G437100 chr5A 86.232 138 13 6 2419 2551 613546213 613546077 1.690000e-30 145.0
29 TraesCS5D01G437100 chr5A 91.111 90 7 1 2914 3002 613545373 613545284 2.840000e-23 121.0
30 TraesCS5D01G437100 chr2D 90.441 136 11 2 1076 1210 291854504 291854638 1.660000e-40 178.0
31 TraesCS5D01G437100 chr2B 90.441 136 11 2 1076 1210 368303860 368303994 1.660000e-40 178.0
32 TraesCS5D01G437100 chr2B 85.385 130 17 2 3878 4005 368308694 368308823 3.650000e-27 134.0
33 TraesCS5D01G437100 chr2A 90.441 136 11 2 1076 1210 367580008 367580142 1.660000e-40 178.0
34 TraesCS5D01G437100 chr2A 85.075 134 17 3 3875 4005 367587000 367587133 3.650000e-27 134.0
35 TraesCS5D01G437100 chr1A 91.176 68 4 2 2928 2995 287305700 287305635 2.230000e-14 91.6
36 TraesCS5D01G437100 chr7D 88.235 68 7 1 2914 2980 461144018 461143951 4.830000e-11 80.5
37 TraesCS5D01G437100 chr3B 92.453 53 1 3 2946 2995 222813471 222813523 8.070000e-09 73.1
38 TraesCS5D01G437100 chr3A 92.157 51 2 2 2928 2978 667355218 667355266 2.900000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G437100 chr5D 491098050 491103858 5808 True 1406.888889 10728 87.098889 1 5809 9 chr5D.!!$R1 5808
1 TraesCS5D01G437100 chr5B 605824842 605830330 5488 True 774.090909 3175 88.179909 368 5715 11 chr5B.!!$R1 5347
2 TraesCS5D01G437100 chr5A 613542484 613548025 5541 True 909.100000 3142 87.431200 337 5809 10 chr5A.!!$R1 5472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 788 0.037877 CAGGCATCCTCATCCCCATC 59.962 60.000 0.00 0.00 0.00 3.51 F
1736 1794 1.136891 CTGTAGCATCGGTGATGTCCA 59.863 52.381 0.00 0.00 41.60 4.02 F
2725 2798 1.373497 CCTATCTGGCCTAAGCGCG 60.373 63.158 3.32 0.00 41.24 6.86 F
3867 4100 0.031515 TCTCGGGGATTGAAGCCCTA 60.032 55.000 19.16 6.21 45.30 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1814 0.625316 ATATCACAACAGGCAGCCCA 59.375 50.0 8.22 0.00 0.00 5.36 R
2769 2851 0.618981 AACTTAGGTGTGCCCTAGGC 59.381 55.0 2.05 0.00 46.62 3.93 R
4185 4421 0.594796 GGCAAGCACCGTTCTTGTTG 60.595 55.0 11.77 0.00 42.06 3.33 R
5113 5570 0.343372 TCCAGGGAGGCTCCAACTAT 59.657 55.0 33.27 11.75 38.64 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 9.566432 AGATCCATCTACATCCTTTGATTTAAC 57.434 33.333 0.00 0.00 34.85 2.01
162 163 9.342308 GATCCATCTACATCCTTTGATTTAACA 57.658 33.333 0.00 0.00 0.00 2.41
163 164 9.699410 ATCCATCTACATCCTTTGATTTAACAA 57.301 29.630 0.00 0.00 0.00 2.83
164 165 9.527157 TCCATCTACATCCTTTGATTTAACAAA 57.473 29.630 0.00 0.00 37.98 2.83
165 166 9.573133 CCATCTACATCCTTTGATTTAACAAAC 57.427 33.333 0.00 0.00 36.11 2.93
171 172 9.097257 ACATCCTTTGATTTAACAAACTTTGTG 57.903 29.630 7.93 0.00 44.59 3.33
172 173 9.311916 CATCCTTTGATTTAACAAACTTTGTGA 57.688 29.630 7.93 0.00 44.59 3.58
173 174 8.925161 TCCTTTGATTTAACAAACTTTGTGAG 57.075 30.769 7.93 0.00 44.59 3.51
174 175 8.744652 TCCTTTGATTTAACAAACTTTGTGAGA 58.255 29.630 7.93 0.00 44.59 3.27
175 176 9.533253 CCTTTGATTTAACAAACTTTGTGAGAT 57.467 29.630 7.93 1.58 44.59 2.75
202 203 5.467035 AAACATCACCAACTTTGTATGGG 57.533 39.130 0.00 0.00 41.17 4.00
203 204 2.825532 ACATCACCAACTTTGTATGGGC 59.174 45.455 0.00 0.00 41.17 5.36
204 205 2.969821 TCACCAACTTTGTATGGGCT 57.030 45.000 0.00 0.00 41.17 5.19
205 206 2.513753 TCACCAACTTTGTATGGGCTG 58.486 47.619 0.00 0.00 41.17 4.85
206 207 1.067635 CACCAACTTTGTATGGGCTGC 60.068 52.381 0.00 0.00 41.17 5.25
207 208 1.255882 CCAACTTTGTATGGGCTGCA 58.744 50.000 0.50 0.00 32.87 4.41
208 209 1.203052 CCAACTTTGTATGGGCTGCAG 59.797 52.381 10.11 10.11 32.87 4.41
209 210 1.888512 CAACTTTGTATGGGCTGCAGT 59.111 47.619 16.64 0.00 0.00 4.40
210 211 2.292828 ACTTTGTATGGGCTGCAGTT 57.707 45.000 16.64 0.71 0.00 3.16
211 212 1.888512 ACTTTGTATGGGCTGCAGTTG 59.111 47.619 16.64 0.00 0.00 3.16
212 213 2.161855 CTTTGTATGGGCTGCAGTTGA 58.838 47.619 16.64 0.00 0.00 3.18
213 214 1.825090 TTGTATGGGCTGCAGTTGAG 58.175 50.000 16.64 0.00 0.00 3.02
214 215 0.677731 TGTATGGGCTGCAGTTGAGC 60.678 55.000 16.64 0.03 35.57 4.26
215 216 1.450134 TATGGGCTGCAGTTGAGCG 60.450 57.895 16.64 0.00 37.32 5.03
216 217 1.898330 TATGGGCTGCAGTTGAGCGA 61.898 55.000 16.64 0.00 37.32 4.93
217 218 3.123620 GGGCTGCAGTTGAGCGAG 61.124 66.667 16.64 0.00 37.32 5.03
218 219 3.797546 GGCTGCAGTTGAGCGAGC 61.798 66.667 16.64 0.00 37.32 5.03
219 220 3.046087 GCTGCAGTTGAGCGAGCA 61.046 61.111 16.64 0.00 38.04 4.26
220 221 3.166421 CTGCAGTTGAGCGAGCAG 58.834 61.111 5.25 0.00 46.98 4.24
221 222 2.736531 TGCAGTTGAGCGAGCAGA 59.263 55.556 0.00 0.00 37.31 4.26
222 223 1.069596 TGCAGTTGAGCGAGCAGAA 59.930 52.632 0.00 0.00 37.31 3.02
223 224 0.532640 TGCAGTTGAGCGAGCAGAAA 60.533 50.000 0.00 0.00 37.31 2.52
224 225 0.588252 GCAGTTGAGCGAGCAGAAAA 59.412 50.000 0.00 0.00 0.00 2.29
225 226 1.002468 GCAGTTGAGCGAGCAGAAAAA 60.002 47.619 0.00 0.00 0.00 1.94
226 227 2.913613 CAGTTGAGCGAGCAGAAAAAG 58.086 47.619 0.00 0.00 0.00 2.27
227 228 2.545526 CAGTTGAGCGAGCAGAAAAAGA 59.454 45.455 0.00 0.00 0.00 2.52
228 229 3.002656 CAGTTGAGCGAGCAGAAAAAGAA 59.997 43.478 0.00 0.00 0.00 2.52
229 230 3.627577 AGTTGAGCGAGCAGAAAAAGAAA 59.372 39.130 0.00 0.00 0.00 2.52
230 231 4.096382 AGTTGAGCGAGCAGAAAAAGAAAA 59.904 37.500 0.00 0.00 0.00 2.29
231 232 4.630894 TGAGCGAGCAGAAAAAGAAAAA 57.369 36.364 0.00 0.00 0.00 1.94
232 233 4.601019 TGAGCGAGCAGAAAAAGAAAAAG 58.399 39.130 0.00 0.00 0.00 2.27
233 234 4.096382 TGAGCGAGCAGAAAAAGAAAAAGT 59.904 37.500 0.00 0.00 0.00 2.66
234 235 4.998788 AGCGAGCAGAAAAAGAAAAAGTT 58.001 34.783 0.00 0.00 0.00 2.66
235 236 5.410924 AGCGAGCAGAAAAAGAAAAAGTTT 58.589 33.333 0.00 0.00 0.00 2.66
236 237 5.289434 AGCGAGCAGAAAAAGAAAAAGTTTG 59.711 36.000 0.00 0.00 0.00 2.93
237 238 5.500771 GCGAGCAGAAAAAGAAAAAGTTTGG 60.501 40.000 0.00 0.00 0.00 3.28
238 239 5.576774 CGAGCAGAAAAAGAAAAAGTTTGGT 59.423 36.000 0.00 0.00 0.00 3.67
239 240 6.750039 CGAGCAGAAAAAGAAAAAGTTTGGTA 59.250 34.615 0.00 0.00 0.00 3.25
240 241 7.274686 CGAGCAGAAAAAGAAAAAGTTTGGTAA 59.725 33.333 0.00 0.00 0.00 2.85
241 242 8.251750 AGCAGAAAAAGAAAAAGTTTGGTAAC 57.748 30.769 0.00 0.00 34.36 2.50
242 243 7.333423 AGCAGAAAAAGAAAAAGTTTGGTAACC 59.667 33.333 0.00 0.00 34.71 2.85
243 244 7.333423 GCAGAAAAAGAAAAAGTTTGGTAACCT 59.667 33.333 0.00 0.00 34.71 3.50
244 245 8.655970 CAGAAAAAGAAAAAGTTTGGTAACCTG 58.344 33.333 0.00 0.00 34.71 4.00
245 246 8.372459 AGAAAAAGAAAAAGTTTGGTAACCTGT 58.628 29.630 0.00 0.00 34.71 4.00
246 247 9.642327 GAAAAAGAAAAAGTTTGGTAACCTGTA 57.358 29.630 0.00 0.00 34.71 2.74
261 262 3.131709 CCTGTATTAGGGCCAGTCATG 57.868 52.381 6.18 0.00 43.33 3.07
262 263 2.498167 CTGTATTAGGGCCAGTCATGC 58.502 52.381 6.18 0.00 0.00 4.06
270 271 4.100084 CCAGTCATGCCCGCCAGA 62.100 66.667 0.00 0.00 0.00 3.86
271 272 2.191375 CAGTCATGCCCGCCAGAT 59.809 61.111 0.00 0.00 0.00 2.90
272 273 2.184830 CAGTCATGCCCGCCAGATG 61.185 63.158 0.00 0.00 0.00 2.90
273 274 3.589881 GTCATGCCCGCCAGATGC 61.590 66.667 0.00 0.00 0.00 3.91
274 275 4.112433 TCATGCCCGCCAGATGCA 62.112 61.111 0.00 0.00 41.33 3.96
275 276 3.142162 CATGCCCGCCAGATGCAA 61.142 61.111 0.00 0.00 41.33 4.08
276 277 2.123597 ATGCCCGCCAGATGCAAT 60.124 55.556 0.00 0.00 41.33 3.56
277 278 1.759299 ATGCCCGCCAGATGCAATT 60.759 52.632 0.00 0.00 41.33 2.32
278 279 0.467844 ATGCCCGCCAGATGCAATTA 60.468 50.000 0.00 0.00 41.33 1.40
279 280 0.467844 TGCCCGCCAGATGCAATTAT 60.468 50.000 0.00 0.00 41.33 1.28
280 281 0.038892 GCCCGCCAGATGCAATTATG 60.039 55.000 0.00 0.00 41.33 1.90
281 282 1.608055 CCCGCCAGATGCAATTATGA 58.392 50.000 0.00 0.00 41.33 2.15
282 283 1.538512 CCCGCCAGATGCAATTATGAG 59.461 52.381 0.00 0.00 41.33 2.90
283 284 2.224606 CCGCCAGATGCAATTATGAGT 58.775 47.619 0.00 0.00 41.33 3.41
284 285 2.031420 CCGCCAGATGCAATTATGAGTG 60.031 50.000 0.00 0.00 41.33 3.51
285 286 2.031420 CGCCAGATGCAATTATGAGTGG 60.031 50.000 0.00 0.00 41.33 4.00
286 287 2.954318 GCCAGATGCAATTATGAGTGGT 59.046 45.455 0.00 0.00 40.77 4.16
287 288 3.382546 GCCAGATGCAATTATGAGTGGTT 59.617 43.478 0.00 0.00 40.77 3.67
288 289 4.735578 GCCAGATGCAATTATGAGTGGTTG 60.736 45.833 0.00 0.00 40.77 3.77
289 290 4.357142 CAGATGCAATTATGAGTGGTTGC 58.643 43.478 0.00 2.25 45.27 4.17
290 291 4.097437 CAGATGCAATTATGAGTGGTTGCT 59.903 41.667 9.87 0.00 45.28 3.91
291 292 4.708421 AGATGCAATTATGAGTGGTTGCTT 59.292 37.500 9.87 4.15 45.28 3.91
292 293 4.177165 TGCAATTATGAGTGGTTGCTTG 57.823 40.909 9.87 0.00 45.28 4.01
293 294 3.825585 TGCAATTATGAGTGGTTGCTTGA 59.174 39.130 9.87 0.00 45.28 3.02
294 295 4.082625 TGCAATTATGAGTGGTTGCTTGAG 60.083 41.667 9.87 0.00 45.28 3.02
295 296 4.082571 GCAATTATGAGTGGTTGCTTGAGT 60.083 41.667 0.00 0.00 42.61 3.41
296 297 5.565439 GCAATTATGAGTGGTTGCTTGAGTT 60.565 40.000 0.00 0.00 42.61 3.01
297 298 5.633830 ATTATGAGTGGTTGCTTGAGTTG 57.366 39.130 0.00 0.00 0.00 3.16
298 299 1.024271 TGAGTGGTTGCTTGAGTTGC 58.976 50.000 0.00 0.00 0.00 4.17
299 300 1.024271 GAGTGGTTGCTTGAGTTGCA 58.976 50.000 0.00 0.00 38.80 4.08
300 301 1.405105 GAGTGGTTGCTTGAGTTGCAA 59.595 47.619 0.00 0.00 46.48 4.08
308 309 4.859304 TGCTTGAGTTGCAATGAAATCT 57.141 36.364 0.59 0.00 37.51 2.40
309 310 5.204409 TGCTTGAGTTGCAATGAAATCTT 57.796 34.783 0.59 0.00 37.51 2.40
310 311 4.986034 TGCTTGAGTTGCAATGAAATCTTG 59.014 37.500 0.59 0.00 37.51 3.02
311 312 4.387862 GCTTGAGTTGCAATGAAATCTTGG 59.612 41.667 0.59 0.00 35.59 3.61
312 313 4.524316 TGAGTTGCAATGAAATCTTGGG 57.476 40.909 0.59 0.00 0.00 4.12
313 314 3.256558 GAGTTGCAATGAAATCTTGGGC 58.743 45.455 0.59 0.00 0.00 5.36
314 315 2.027837 AGTTGCAATGAAATCTTGGGCC 60.028 45.455 0.59 0.00 0.00 5.80
315 316 0.531657 TGCAATGAAATCTTGGGCCG 59.468 50.000 0.00 0.00 0.00 6.13
316 317 0.532115 GCAATGAAATCTTGGGCCGT 59.468 50.000 0.00 0.00 0.00 5.68
317 318 1.748493 GCAATGAAATCTTGGGCCGTA 59.252 47.619 0.00 0.00 0.00 4.02
318 319 2.362077 GCAATGAAATCTTGGGCCGTAT 59.638 45.455 0.00 0.00 0.00 3.06
319 320 3.796504 GCAATGAAATCTTGGGCCGTATG 60.797 47.826 0.00 0.00 0.00 2.39
320 321 3.576078 ATGAAATCTTGGGCCGTATGA 57.424 42.857 0.00 0.00 0.00 2.15
321 322 3.358111 TGAAATCTTGGGCCGTATGAA 57.642 42.857 0.00 0.00 0.00 2.57
322 323 3.013921 TGAAATCTTGGGCCGTATGAAC 58.986 45.455 0.00 0.00 0.00 3.18
323 324 2.052782 AATCTTGGGCCGTATGAACC 57.947 50.000 0.00 0.00 0.00 3.62
324 325 0.179056 ATCTTGGGCCGTATGAACCG 60.179 55.000 0.00 0.00 0.00 4.44
325 326 1.078708 CTTGGGCCGTATGAACCGT 60.079 57.895 0.00 0.00 0.00 4.83
326 327 0.176219 CTTGGGCCGTATGAACCGTA 59.824 55.000 0.00 0.00 0.00 4.02
327 328 0.612229 TTGGGCCGTATGAACCGTAA 59.388 50.000 0.00 0.00 0.00 3.18
328 329 0.612229 TGGGCCGTATGAACCGTAAA 59.388 50.000 0.00 0.00 0.00 2.01
329 330 1.292992 GGGCCGTATGAACCGTAAAG 58.707 55.000 0.00 0.00 0.00 1.85
330 331 0.654160 GGCCGTATGAACCGTAAAGC 59.346 55.000 0.00 0.00 0.00 3.51
331 332 1.361793 GCCGTATGAACCGTAAAGCA 58.638 50.000 0.00 0.00 0.00 3.91
332 333 1.937899 GCCGTATGAACCGTAAAGCAT 59.062 47.619 0.00 0.00 0.00 3.79
333 334 2.033151 GCCGTATGAACCGTAAAGCATC 60.033 50.000 0.00 0.00 0.00 3.91
334 335 3.454375 CCGTATGAACCGTAAAGCATCT 58.546 45.455 0.00 0.00 0.00 2.90
335 336 3.489785 CCGTATGAACCGTAAAGCATCTC 59.510 47.826 0.00 0.00 0.00 2.75
343 344 3.617263 ACCGTAAAGCATCTCGAATTGTC 59.383 43.478 0.00 0.00 0.00 3.18
344 345 3.616821 CCGTAAAGCATCTCGAATTGTCA 59.383 43.478 0.00 0.00 0.00 3.58
374 375 2.038863 ACCACCCATACCACTCAAGA 57.961 50.000 0.00 0.00 0.00 3.02
446 450 7.702348 CCTAAAAAGGAAGCAGATTTTATTCGG 59.298 37.037 0.00 0.00 29.71 4.30
451 455 7.227049 AGGAAGCAGATTTTATTCGGAAAAA 57.773 32.000 0.00 0.00 32.29 1.94
519 523 4.479993 GCTGCACGGCCAGGATCT 62.480 66.667 2.24 0.00 33.44 2.75
535 539 2.170607 GGATCTGATCAGGAACGGGAAA 59.829 50.000 22.42 0.00 0.00 3.13
615 627 4.787280 ACTCTCTCCGGGCCCCAG 62.787 72.222 18.66 13.09 0.00 4.45
629 641 0.407918 CCCCAGCAAGTTCCCCTTTA 59.592 55.000 0.00 0.00 0.00 1.85
752 772 1.180029 CACTTGGGCCAAGATTCAGG 58.820 55.000 44.20 23.00 43.42 3.86
768 788 0.037877 CAGGCATCCTCATCCCCATC 59.962 60.000 0.00 0.00 0.00 3.51
771 791 1.681666 CATCCTCATCCCCATCCCG 59.318 63.158 0.00 0.00 0.00 5.14
1213 1250 1.259507 CGCCGTCATATTTGGGTAACG 59.740 52.381 0.00 0.00 37.60 3.18
1239 1276 4.039609 ACAAATCCTGCCCTTTTTCTCTTG 59.960 41.667 0.00 0.00 0.00 3.02
1241 1278 3.312736 TCCTGCCCTTTTTCTCTTGTT 57.687 42.857 0.00 0.00 0.00 2.83
1242 1279 2.958355 TCCTGCCCTTTTTCTCTTGTTG 59.042 45.455 0.00 0.00 0.00 3.33
1244 1281 3.132824 CCTGCCCTTTTTCTCTTGTTGTT 59.867 43.478 0.00 0.00 0.00 2.83
1245 1282 4.363138 CTGCCCTTTTTCTCTTGTTGTTC 58.637 43.478 0.00 0.00 0.00 3.18
1280 1317 4.918201 GCTTGGGGATCTCGCGGG 62.918 72.222 6.13 1.01 0.00 6.13
1324 1366 2.532235 GTGCGTCGTTGATGTATGGTA 58.468 47.619 0.00 0.00 0.00 3.25
1326 1368 1.515631 GCGTCGTTGATGTATGGTACG 59.484 52.381 0.00 0.00 0.00 3.67
1377 1419 1.376424 CGTGTGATTCTGCAGGCCT 60.376 57.895 15.13 0.00 0.00 5.19
1486 1530 4.495422 CTCGATTACTAGTGTTTGCCTGT 58.505 43.478 5.39 0.00 0.00 4.00
1496 1540 4.144297 AGTGTTTGCCTGTTGTGTGATAT 58.856 39.130 0.00 0.00 0.00 1.63
1497 1541 4.022935 AGTGTTTGCCTGTTGTGTGATATG 60.023 41.667 0.00 0.00 0.00 1.78
1617 1664 5.045578 ACAAGGTGTGGATGTAGAGCTAATT 60.046 40.000 0.00 0.00 0.00 1.40
1626 1675 7.865385 GTGGATGTAGAGCTAATTGAGTAGAAG 59.135 40.741 0.00 0.00 0.00 2.85
1644 1694 2.470057 AGAACTTTCTGCCCCCAAAA 57.530 45.000 0.00 0.00 35.89 2.44
1678 1728 3.756933 AACTAAGCCTGTCGTTTACCA 57.243 42.857 0.00 0.00 0.00 3.25
1688 1738 4.240096 CTGTCGTTTACCAGTCGGTTTAT 58.760 43.478 0.00 0.00 46.31 1.40
1726 1784 1.359848 AACCGAAAGCTGTAGCATCG 58.640 50.000 18.87 18.87 45.63 3.84
1736 1794 1.136891 CTGTAGCATCGGTGATGTCCA 59.863 52.381 0.00 0.00 41.60 4.02
1831 1889 7.011109 GCCTATTTGTAATCTGTAATCGTGTGT 59.989 37.037 0.00 0.00 0.00 3.72
1850 1908 4.058817 GTGTGAAATTGTCGTCTTCCTCT 58.941 43.478 0.00 0.00 0.00 3.69
1871 1929 9.618890 TCCTCTTTTGATTTCTCATATACAAGG 57.381 33.333 0.00 0.00 0.00 3.61
1872 1930 9.401058 CCTCTTTTGATTTCTCATATACAAGGT 57.599 33.333 0.00 0.00 0.00 3.50
1874 1932 9.739276 TCTTTTGATTTCTCATATACAAGGTGT 57.261 29.630 0.00 0.00 0.00 4.16
1880 1938 9.988815 GATTTCTCATATACAAGGTGTAGATGT 57.011 33.333 17.81 3.82 46.74 3.06
1922 1980 4.506758 CAATAACTTTCTGCCCCCAAATG 58.493 43.478 0.00 0.00 0.00 2.32
1971 2029 2.658285 ACCGGTCGGATTATGTCACTA 58.342 47.619 16.90 0.00 38.96 2.74
1980 2045 4.296690 GGATTATGTCACTAGTACGGCAC 58.703 47.826 0.00 0.00 0.00 5.01
2064 2129 6.146184 CCTGTTGCGATATAGTGATTGGTTAG 59.854 42.308 0.00 0.00 0.00 2.34
2161 2232 8.926092 TCATAGTGTAGATGTAGAGCTAATGT 57.074 34.615 0.00 0.00 0.00 2.71
2205 2276 3.209410 CCAGAATAGCAACCTGCCTAAG 58.791 50.000 0.00 0.00 46.52 2.18
2209 2280 5.880332 CAGAATAGCAACCTGCCTAAGTAAA 59.120 40.000 0.00 0.00 46.52 2.01
2336 2408 6.650807 CCTGTTGTGATATAGCGATTGGTTAT 59.349 38.462 0.00 0.00 0.00 1.89
2397 2469 4.511826 GTGTGAGAAATTGTCGTCTTCCTT 59.488 41.667 0.00 0.00 0.00 3.36
2415 2487 9.178758 GTCTTCCTTGTTTGATATCCAATAACT 57.821 33.333 0.00 0.00 34.23 2.24
2416 2488 9.753674 TCTTCCTTGTTTGATATCCAATAACTT 57.246 29.630 0.00 0.00 34.23 2.66
2487 2559 2.488937 TCGGTTTATGTCACTGCTACGA 59.511 45.455 0.00 0.00 0.00 3.43
2490 2562 3.991773 GGTTTATGTCACTGCTACGACAA 59.008 43.478 6.72 0.00 44.78 3.18
2492 2564 2.370281 ATGTCACTGCTACGACAAGG 57.630 50.000 6.72 0.00 44.78 3.61
2554 2626 2.978156 AACTGAAAGGGCTTCCATCA 57.022 45.000 0.00 0.00 39.30 3.07
2725 2798 1.373497 CCTATCTGGCCTAAGCGCG 60.373 63.158 3.32 0.00 41.24 6.86
2768 2850 1.076332 GCATTTCGTTGTCGCCTAGT 58.924 50.000 0.00 0.00 36.96 2.57
2769 2851 1.201921 GCATTTCGTTGTCGCCTAGTG 60.202 52.381 0.00 0.00 36.96 2.74
2770 2852 1.076332 ATTTCGTTGTCGCCTAGTGC 58.924 50.000 0.00 0.00 36.96 4.40
2771 2853 0.947180 TTTCGTTGTCGCCTAGTGCC 60.947 55.000 0.00 0.00 36.24 5.01
2772 2854 1.812686 TTCGTTGTCGCCTAGTGCCT 61.813 55.000 0.00 0.00 36.24 4.75
2773 2855 0.961857 TCGTTGTCGCCTAGTGCCTA 60.962 55.000 0.00 0.00 36.24 3.93
2774 2856 0.525668 CGTTGTCGCCTAGTGCCTAG 60.526 60.000 3.06 3.06 36.24 3.02
2792 2904 3.948735 GGGCACACCTAAGTTGCTA 57.051 52.632 0.00 0.00 35.85 3.49
2880 2992 4.427312 CATAAAAGAACATGCTCTTGGCC 58.573 43.478 11.99 0.00 40.92 5.36
2936 3130 4.910195 TCCCGCTGCATCAAATATAAGAT 58.090 39.130 0.00 0.00 0.00 2.40
3172 3400 2.430694 TCTCGTAGCACAACTGGCATAT 59.569 45.455 0.00 0.00 0.00 1.78
3180 3408 4.640201 AGCACAACTGGCATATTTTATCGT 59.360 37.500 0.00 0.00 0.00 3.73
3187 3415 3.314913 TGGCATATTTTATCGTGGCACAG 59.685 43.478 19.09 10.60 41.80 3.66
3211 3439 1.475403 TTTTTGTTGGGCGAGGTCAA 58.525 45.000 0.00 0.00 0.00 3.18
3237 3465 2.246067 TCTCTAGAGCCCAGAGGACAAT 59.754 50.000 15.35 0.00 40.04 2.71
3265 3493 2.300152 TGTCTTCTGCAAGGTACTGAGG 59.700 50.000 0.00 0.00 40.86 3.86
3304 3532 8.816640 ATTAAATATCAGCTTTATTTTGCGGG 57.183 30.769 13.79 0.00 32.83 6.13
3320 3548 1.405661 GCGGGGTTTTGTTTGTTTGGA 60.406 47.619 0.00 0.00 0.00 3.53
3390 3618 7.611855 CAGGAATGTCTACTTTCTACCCAATTT 59.388 37.037 8.19 0.00 32.53 1.82
3398 3626 1.828979 TCTACCCAATTTCGGTTGCC 58.171 50.000 0.00 0.00 34.66 4.52
3399 3627 1.353022 TCTACCCAATTTCGGTTGCCT 59.647 47.619 0.00 0.00 34.66 4.75
3400 3628 1.472480 CTACCCAATTTCGGTTGCCTG 59.528 52.381 0.00 0.00 34.66 4.85
3401 3629 1.079888 CCCAATTTCGGTTGCCTGC 60.080 57.895 0.00 0.00 0.00 4.85
3402 3630 1.664873 CCAATTTCGGTTGCCTGCA 59.335 52.632 0.00 0.00 0.00 4.41
3403 3631 0.033228 CCAATTTCGGTTGCCTGCAA 59.967 50.000 0.00 0.00 0.00 4.08
3404 3632 1.421382 CAATTTCGGTTGCCTGCAAG 58.579 50.000 4.52 0.00 36.52 4.01
3429 3657 2.293399 GCAAGACTTAAACACACCCTGG 59.707 50.000 0.00 0.00 0.00 4.45
3450 3678 9.745018 CCCTGGAATTGTGATAACTGATAATAT 57.255 33.333 0.00 0.00 0.00 1.28
3485 3714 4.588899 TCCAGTTCGATGTTCATTGGATT 58.411 39.130 0.00 0.00 0.00 3.01
3486 3715 4.395854 TCCAGTTCGATGTTCATTGGATTG 59.604 41.667 0.00 0.00 0.00 2.67
3489 3718 6.250819 CAGTTCGATGTTCATTGGATTGTAC 58.749 40.000 0.00 0.00 0.00 2.90
3508 3737 2.323968 CCCCTTTGGTTTGGTTTGTG 57.676 50.000 0.00 0.00 0.00 3.33
3509 3738 1.134250 CCCCTTTGGTTTGGTTTGTGG 60.134 52.381 0.00 0.00 0.00 4.17
3510 3739 1.557371 CCCTTTGGTTTGGTTTGTGGT 59.443 47.619 0.00 0.00 0.00 4.16
3511 3740 2.026729 CCCTTTGGTTTGGTTTGTGGTT 60.027 45.455 0.00 0.00 0.00 3.67
3512 3741 3.560239 CCCTTTGGTTTGGTTTGTGGTTT 60.560 43.478 0.00 0.00 0.00 3.27
3513 3742 4.323562 CCCTTTGGTTTGGTTTGTGGTTTA 60.324 41.667 0.00 0.00 0.00 2.01
3514 3743 5.432645 CCTTTGGTTTGGTTTGTGGTTTAT 58.567 37.500 0.00 0.00 0.00 1.40
3526 3755 6.307077 GGTTTGTGGTTTATTAAGATCGCAAC 59.693 38.462 0.00 0.00 0.00 4.17
3548 3777 7.854422 GCAACCTACTTAGTTTAGTTTGACAAC 59.146 37.037 0.00 0.00 0.00 3.32
3592 3821 6.368779 AAACTACATACATGGTACCAGTGT 57.631 37.500 21.41 23.14 0.00 3.55
3657 3889 9.112725 GGAGAACAAACTAGTGGTTTTAAGTAA 57.887 33.333 12.81 0.00 44.77 2.24
3818 4050 8.548025 TCCTCTTTATGACTACCATTCAATCAA 58.452 33.333 0.00 0.00 36.71 2.57
3852 4085 7.408132 TCTTCAAATGACTAAACTGTTCTCG 57.592 36.000 0.00 0.00 0.00 4.04
3854 4087 4.994852 TCAAATGACTAAACTGTTCTCGGG 59.005 41.667 0.00 0.00 0.00 5.14
3865 4098 0.748367 GTTCTCGGGGATTGAAGCCC 60.748 60.000 10.71 10.71 45.25 5.19
3867 4100 0.031515 TCTCGGGGATTGAAGCCCTA 60.032 55.000 19.16 6.21 45.30 3.53
3869 4102 1.211949 CTCGGGGATTGAAGCCCTAAA 59.788 52.381 19.16 3.26 45.30 1.85
3895 4128 7.507616 AGGTCTGTTGGAAATTGGTTTAATGTA 59.492 33.333 0.00 0.00 0.00 2.29
3899 4132 9.150348 CTGTTGGAAATTGGTTTAATGTATTCC 57.850 33.333 0.00 0.00 35.29 3.01
4028 4263 5.344743 TCTTTAGGCCATCTCTTACTGTG 57.655 43.478 5.01 0.00 0.00 3.66
4033 4268 7.618019 TTAGGCCATCTCTTACTGTGATTAT 57.382 36.000 5.01 0.00 0.00 1.28
4036 4271 7.846066 AGGCCATCTCTTACTGTGATTATATC 58.154 38.462 5.01 0.00 0.00 1.63
4121 4357 6.546034 ACCAACTACTCTTAAGTTTGCACAAT 59.454 34.615 1.63 0.00 34.99 2.71
4122 4358 7.078228 CCAACTACTCTTAAGTTTGCACAATC 58.922 38.462 1.63 0.00 34.99 2.67
4123 4359 7.041098 CCAACTACTCTTAAGTTTGCACAATCT 60.041 37.037 1.63 0.00 34.99 2.40
4124 4360 7.426929 ACTACTCTTAAGTTTGCACAATCTG 57.573 36.000 1.63 0.00 36.92 2.90
4125 4361 6.992715 ACTACTCTTAAGTTTGCACAATCTGT 59.007 34.615 1.63 0.00 36.92 3.41
4126 4362 8.148351 ACTACTCTTAAGTTTGCACAATCTGTA 58.852 33.333 1.63 0.00 36.92 2.74
4127 4363 7.801716 ACTCTTAAGTTTGCACAATCTGTAA 57.198 32.000 1.63 0.00 28.74 2.41
4128 4364 8.396272 ACTCTTAAGTTTGCACAATCTGTAAT 57.604 30.769 1.63 0.00 28.74 1.89
4138 4374 6.554419 TGCACAATCTGTAATTCTGTATTGC 58.446 36.000 0.00 0.00 0.00 3.56
4201 4437 0.751643 AGGCAACAAGAACGGTGCTT 60.752 50.000 0.00 0.00 41.41 3.91
4213 4449 1.526575 CGGTGCTTGCCTGTGGATTT 61.527 55.000 0.00 0.00 0.00 2.17
4332 4652 7.010183 CGACCAATAAATAGTTACCAGTGACAG 59.990 40.741 0.00 0.00 0.00 3.51
4333 4653 6.598064 ACCAATAAATAGTTACCAGTGACAGC 59.402 38.462 0.00 0.00 0.00 4.40
4334 4654 6.597672 CCAATAAATAGTTACCAGTGACAGCA 59.402 38.462 0.00 0.00 0.00 4.41
4422 4744 9.305925 GGATGTAAAGATTATTTTCCTTGCTTG 57.694 33.333 0.00 0.00 0.00 4.01
4437 4759 3.106242 TGCTTGCTTCGAAAGTAGTGA 57.894 42.857 0.00 0.00 0.00 3.41
4651 4973 2.214181 CTGGACAGCGGACTAGCGTT 62.214 60.000 0.00 0.00 43.00 4.84
4861 5186 6.371548 TGTTATAGCTAAGAAGTTGTTGCTGG 59.628 38.462 15.23 0.00 32.72 4.85
4874 5199 0.662619 TTGCTGGTTGCGAGTCTTTG 59.337 50.000 0.00 0.00 46.63 2.77
4886 5212 2.576615 GAGTCTTTGAACCCTTGTGCT 58.423 47.619 0.00 0.00 0.00 4.40
4888 5214 2.952310 AGTCTTTGAACCCTTGTGCTTC 59.048 45.455 0.00 0.00 0.00 3.86
4894 5220 2.224523 TGAACCCTTGTGCTTCCTACAG 60.225 50.000 0.00 0.00 0.00 2.74
4909 5235 4.769688 TCCTACAGATGGTATTTGTGCTG 58.230 43.478 0.00 0.00 0.00 4.41
4910 5236 4.225042 TCCTACAGATGGTATTTGTGCTGT 59.775 41.667 0.00 0.00 39.61 4.40
4937 5359 4.848562 ATACTGATCGGCGTAATTCTCA 57.151 40.909 6.85 1.24 0.00 3.27
4940 5362 2.797156 CTGATCGGCGTAATTCTCAAGG 59.203 50.000 6.85 0.00 0.00 3.61
4961 5383 3.071479 GCATTGGTAGAAACAGGAACGA 58.929 45.455 0.00 0.00 0.00 3.85
4962 5384 3.689649 GCATTGGTAGAAACAGGAACGAT 59.310 43.478 0.00 0.00 0.00 3.73
5041 5463 2.708051 TGCTCTTGAGATGAAGGCTTG 58.292 47.619 3.46 0.00 0.00 4.01
5044 5466 3.619487 GCTCTTGAGATGAAGGCTTGAGT 60.619 47.826 3.46 0.00 0.00 3.41
5059 5481 4.214332 GGCTTGAGTTAGAGAAACAACAGG 59.786 45.833 0.00 0.00 40.83 4.00
5067 5524 2.171003 GAGAAACAACAGGGGGATTGG 58.829 52.381 0.00 0.00 0.00 3.16
5074 5531 0.479589 ACAGGGGGATTGGAAGGGAA 60.480 55.000 0.00 0.00 0.00 3.97
5110 5567 4.157840 ACACTGACAGAAGAAAAACAACCC 59.842 41.667 10.08 0.00 0.00 4.11
5113 5570 6.094881 CACTGACAGAAGAAAAACAACCCTAA 59.905 38.462 10.08 0.00 0.00 2.69
5143 5614 1.333177 CTCCCTGGAGGATAACTCGG 58.667 60.000 5.22 0.00 46.33 4.63
5155 5626 0.179137 TAACTCGGTCATCTGCAGCG 60.179 55.000 9.47 6.59 36.08 5.18
5186 5657 3.005539 TCCTCCTGGGAGCTGCAC 61.006 66.667 7.79 0.00 39.58 4.57
5188 5659 4.463879 CTCCTGGGAGCTGCACGG 62.464 72.222 7.79 6.63 35.31 4.94
5213 5685 0.250338 ACGGGAGAAACAGCTGGTTC 60.250 55.000 32.84 32.84 41.89 3.62
5512 5987 0.109735 CACAGCAGCTGCATCACAAG 60.110 55.000 38.24 20.33 45.16 3.16
5532 6007 3.539604 AGCAAGATTCAGGTATCTGTGC 58.460 45.455 2.20 5.17 41.59 4.57
5555 6030 1.917955 CGTTGTGCACTACCATCTACG 59.082 52.381 22.80 12.72 0.00 3.51
5603 6078 4.100189 AGTTCCTTCATTATCTCCACCTCG 59.900 45.833 0.00 0.00 0.00 4.63
5666 6141 6.237901 CAGGATCACCCCGAAATCAAATATA 58.762 40.000 0.00 0.00 36.73 0.86
5728 6203 4.758674 TGCAGAACAAGGAAAGATGAAGAG 59.241 41.667 0.00 0.00 0.00 2.85
5747 6222 4.694339 AGAGAATATTAGTTGTGCCGGTC 58.306 43.478 1.90 0.00 0.00 4.79
5749 6224 3.131577 AGAATATTAGTTGTGCCGGTCGA 59.868 43.478 1.90 0.00 0.00 4.20
5752 6227 1.219646 TTAGTTGTGCCGGTCGAAAC 58.780 50.000 1.90 3.27 0.00 2.78
5753 6228 0.600782 TAGTTGTGCCGGTCGAAACC 60.601 55.000 1.90 0.00 42.66 3.27
5762 6237 2.973420 GGTCGAAACCGCTAGATGG 58.027 57.895 0.00 0.00 35.36 3.51
5778 6253 4.070630 AGATGGTAAGCATCTGAAGCTC 57.929 45.455 7.95 0.00 42.53 4.09
5782 6257 2.605366 GGTAAGCATCTGAAGCTCGAAC 59.395 50.000 7.95 7.06 42.53 3.95
5789 6264 4.437239 CATCTGAAGCTCGAACCTTGTAT 58.563 43.478 3.00 0.00 0.00 2.29
5796 6271 6.774170 TGAAGCTCGAACCTTGTATATACCTA 59.226 38.462 10.38 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 9.566432 GTTAAATCAAAGGATGTAGATGGATCT 57.434 33.333 0.00 0.00 35.97 2.75
136 137 9.342308 TGTTAAATCAAAGGATGTAGATGGATC 57.658 33.333 0.00 0.00 32.92 3.36
137 138 9.699410 TTGTTAAATCAAAGGATGTAGATGGAT 57.301 29.630 0.00 0.00 32.92 3.41
138 139 9.527157 TTTGTTAAATCAAAGGATGTAGATGGA 57.473 29.630 0.00 0.00 34.02 3.41
139 140 9.573133 GTTTGTTAAATCAAAGGATGTAGATGG 57.427 33.333 0.00 0.00 37.87 3.51
145 146 9.097257 CACAAAGTTTGTTAAATCAAAGGATGT 57.903 29.630 18.59 0.00 43.23 3.06
146 147 9.311916 TCACAAAGTTTGTTAAATCAAAGGATG 57.688 29.630 18.59 2.99 43.23 3.51
147 148 9.533253 CTCACAAAGTTTGTTAAATCAAAGGAT 57.467 29.630 18.59 0.00 43.23 3.24
148 149 8.744652 TCTCACAAAGTTTGTTAAATCAAAGGA 58.255 29.630 18.59 7.98 43.23 3.36
149 150 8.925161 TCTCACAAAGTTTGTTAAATCAAAGG 57.075 30.769 18.59 4.03 43.23 3.11
178 179 6.287525 CCCATACAAAGTTGGTGATGTTTTT 58.712 36.000 0.00 0.00 0.00 1.94
179 180 5.741673 GCCCATACAAAGTTGGTGATGTTTT 60.742 40.000 0.00 0.00 0.00 2.43
180 181 4.262420 GCCCATACAAAGTTGGTGATGTTT 60.262 41.667 0.00 0.00 0.00 2.83
181 182 3.258123 GCCCATACAAAGTTGGTGATGTT 59.742 43.478 0.00 0.00 0.00 2.71
182 183 2.825532 GCCCATACAAAGTTGGTGATGT 59.174 45.455 0.00 0.00 0.00 3.06
183 184 3.091545 AGCCCATACAAAGTTGGTGATG 58.908 45.455 0.00 0.00 0.00 3.07
184 185 3.091545 CAGCCCATACAAAGTTGGTGAT 58.908 45.455 0.00 0.00 0.00 3.06
185 186 2.513753 CAGCCCATACAAAGTTGGTGA 58.486 47.619 0.00 0.00 0.00 4.02
186 187 1.067635 GCAGCCCATACAAAGTTGGTG 60.068 52.381 0.00 0.00 0.00 4.17
187 188 1.256812 GCAGCCCATACAAAGTTGGT 58.743 50.000 0.00 0.00 0.00 3.67
188 189 1.203052 CTGCAGCCCATACAAAGTTGG 59.797 52.381 0.00 0.00 0.00 3.77
189 190 1.888512 ACTGCAGCCCATACAAAGTTG 59.111 47.619 15.27 0.00 0.00 3.16
190 191 2.292828 ACTGCAGCCCATACAAAGTT 57.707 45.000 15.27 0.00 0.00 2.66
191 192 1.888512 CAACTGCAGCCCATACAAAGT 59.111 47.619 15.27 0.00 0.00 2.66
192 193 2.161855 TCAACTGCAGCCCATACAAAG 58.838 47.619 15.27 0.00 0.00 2.77
193 194 2.161855 CTCAACTGCAGCCCATACAAA 58.838 47.619 15.27 0.00 0.00 2.83
194 195 1.825090 CTCAACTGCAGCCCATACAA 58.175 50.000 15.27 0.00 0.00 2.41
195 196 0.677731 GCTCAACTGCAGCCCATACA 60.678 55.000 15.27 0.00 0.00 2.29
196 197 1.709147 CGCTCAACTGCAGCCCATAC 61.709 60.000 15.27 0.00 32.83 2.39
197 198 1.450134 CGCTCAACTGCAGCCCATA 60.450 57.895 15.27 0.00 32.83 2.74
198 199 2.749044 CGCTCAACTGCAGCCCAT 60.749 61.111 15.27 0.00 32.83 4.00
199 200 3.889134 CTCGCTCAACTGCAGCCCA 62.889 63.158 15.27 0.00 32.83 5.36
200 201 3.123620 CTCGCTCAACTGCAGCCC 61.124 66.667 15.27 0.00 32.83 5.19
201 202 3.797546 GCTCGCTCAACTGCAGCC 61.798 66.667 15.27 0.00 33.92 4.85
202 203 3.024782 CTGCTCGCTCAACTGCAGC 62.025 63.158 15.27 0.00 44.72 5.25
203 204 3.166421 CTGCTCGCTCAACTGCAG 58.834 61.111 13.48 13.48 45.15 4.41
204 205 0.532640 TTTCTGCTCGCTCAACTGCA 60.533 50.000 0.00 0.00 0.00 4.41
205 206 0.588252 TTTTCTGCTCGCTCAACTGC 59.412 50.000 0.00 0.00 0.00 4.40
206 207 2.545526 TCTTTTTCTGCTCGCTCAACTG 59.454 45.455 0.00 0.00 0.00 3.16
207 208 2.838736 TCTTTTTCTGCTCGCTCAACT 58.161 42.857 0.00 0.00 0.00 3.16
208 209 3.609103 TTCTTTTTCTGCTCGCTCAAC 57.391 42.857 0.00 0.00 0.00 3.18
209 210 4.630894 TTTTCTTTTTCTGCTCGCTCAA 57.369 36.364 0.00 0.00 0.00 3.02
210 211 4.096382 ACTTTTTCTTTTTCTGCTCGCTCA 59.904 37.500 0.00 0.00 0.00 4.26
211 212 4.602006 ACTTTTTCTTTTTCTGCTCGCTC 58.398 39.130 0.00 0.00 0.00 5.03
212 213 4.639135 ACTTTTTCTTTTTCTGCTCGCT 57.361 36.364 0.00 0.00 0.00 4.93
213 214 5.484085 CAAACTTTTTCTTTTTCTGCTCGC 58.516 37.500 0.00 0.00 0.00 5.03
214 215 5.576774 ACCAAACTTTTTCTTTTTCTGCTCG 59.423 36.000 0.00 0.00 0.00 5.03
215 216 6.968131 ACCAAACTTTTTCTTTTTCTGCTC 57.032 33.333 0.00 0.00 0.00 4.26
216 217 7.333423 GGTTACCAAACTTTTTCTTTTTCTGCT 59.667 33.333 0.00 0.00 35.81 4.24
217 218 7.333423 AGGTTACCAAACTTTTTCTTTTTCTGC 59.667 33.333 3.51 0.00 35.81 4.26
218 219 8.655970 CAGGTTACCAAACTTTTTCTTTTTCTG 58.344 33.333 3.51 0.00 35.81 3.02
219 220 8.372459 ACAGGTTACCAAACTTTTTCTTTTTCT 58.628 29.630 3.51 0.00 35.81 2.52
220 221 8.542497 ACAGGTTACCAAACTTTTTCTTTTTC 57.458 30.769 3.51 0.00 35.81 2.29
225 226 9.074576 CCTAATACAGGTTACCAAACTTTTTCT 57.925 33.333 3.51 0.00 39.91 2.52
226 227 8.301720 CCCTAATACAGGTTACCAAACTTTTTC 58.698 37.037 3.51 0.00 43.80 2.29
227 228 7.256048 GCCCTAATACAGGTTACCAAACTTTTT 60.256 37.037 3.51 0.00 43.80 1.94
228 229 6.209986 GCCCTAATACAGGTTACCAAACTTTT 59.790 38.462 3.51 0.00 43.80 2.27
229 230 5.713389 GCCCTAATACAGGTTACCAAACTTT 59.287 40.000 3.51 0.00 43.80 2.66
230 231 5.258841 GCCCTAATACAGGTTACCAAACTT 58.741 41.667 3.51 0.00 43.80 2.66
231 232 4.324797 GGCCCTAATACAGGTTACCAAACT 60.325 45.833 3.51 0.00 43.80 2.66
232 233 3.949754 GGCCCTAATACAGGTTACCAAAC 59.050 47.826 3.51 0.00 43.80 2.93
233 234 3.592427 TGGCCCTAATACAGGTTACCAAA 59.408 43.478 3.51 0.00 43.80 3.28
234 235 3.191273 TGGCCCTAATACAGGTTACCAA 58.809 45.455 3.51 0.00 43.80 3.67
235 236 2.775384 CTGGCCCTAATACAGGTTACCA 59.225 50.000 3.51 0.00 43.80 3.25
236 237 2.775960 ACTGGCCCTAATACAGGTTACC 59.224 50.000 0.00 0.00 43.80 2.85
237 238 3.453353 TGACTGGCCCTAATACAGGTTAC 59.547 47.826 0.00 0.00 43.80 2.50
238 239 3.726790 TGACTGGCCCTAATACAGGTTA 58.273 45.455 0.00 0.00 43.80 2.85
239 240 2.557869 TGACTGGCCCTAATACAGGTT 58.442 47.619 0.00 0.00 43.80 3.50
240 241 2.263895 TGACTGGCCCTAATACAGGT 57.736 50.000 0.00 0.00 43.80 4.00
241 242 2.811873 GCATGACTGGCCCTAATACAGG 60.812 54.545 0.00 0.00 45.07 4.00
242 243 2.498167 GCATGACTGGCCCTAATACAG 58.502 52.381 0.00 0.00 38.19 2.74
243 244 1.142870 GGCATGACTGGCCCTAATACA 59.857 52.381 0.00 0.00 45.87 2.29
244 245 1.897560 GGCATGACTGGCCCTAATAC 58.102 55.000 0.00 0.00 45.87 1.89
253 254 3.411114 ATCTGGCGGGCATGACTGG 62.411 63.158 10.08 0.00 0.00 4.00
254 255 2.184830 CATCTGGCGGGCATGACTG 61.185 63.158 1.77 1.77 0.00 3.51
255 256 2.191375 CATCTGGCGGGCATGACT 59.809 61.111 4.16 0.00 0.00 3.41
256 257 3.589881 GCATCTGGCGGGCATGAC 61.590 66.667 4.16 0.00 0.00 3.06
265 266 2.954318 ACCACTCATAATTGCATCTGGC 59.046 45.455 0.00 0.00 45.13 4.85
266 267 4.735578 GCAACCACTCATAATTGCATCTGG 60.736 45.833 3.06 0.00 45.38 3.86
267 268 4.357142 GCAACCACTCATAATTGCATCTG 58.643 43.478 3.06 0.00 45.38 2.90
268 269 4.644103 GCAACCACTCATAATTGCATCT 57.356 40.909 3.06 0.00 45.38 2.90
272 273 4.082571 ACTCAAGCAACCACTCATAATTGC 60.083 41.667 0.00 0.00 46.21 3.56
273 274 5.633830 ACTCAAGCAACCACTCATAATTG 57.366 39.130 0.00 0.00 0.00 2.32
274 275 5.565439 GCAACTCAAGCAACCACTCATAATT 60.565 40.000 0.00 0.00 0.00 1.40
275 276 4.082571 GCAACTCAAGCAACCACTCATAAT 60.083 41.667 0.00 0.00 0.00 1.28
276 277 3.253188 GCAACTCAAGCAACCACTCATAA 59.747 43.478 0.00 0.00 0.00 1.90
277 278 2.813754 GCAACTCAAGCAACCACTCATA 59.186 45.455 0.00 0.00 0.00 2.15
278 279 1.610522 GCAACTCAAGCAACCACTCAT 59.389 47.619 0.00 0.00 0.00 2.90
279 280 1.024271 GCAACTCAAGCAACCACTCA 58.976 50.000 0.00 0.00 0.00 3.41
280 281 1.024271 TGCAACTCAAGCAACCACTC 58.976 50.000 0.00 0.00 39.39 3.51
281 282 1.473258 TTGCAACTCAAGCAACCACT 58.527 45.000 0.00 0.00 46.13 4.00
287 288 4.859304 AGATTTCATTGCAACTCAAGCA 57.141 36.364 0.00 0.00 38.22 3.91
288 289 4.387862 CCAAGATTTCATTGCAACTCAAGC 59.612 41.667 0.00 0.00 38.22 4.01
289 290 4.927425 CCCAAGATTTCATTGCAACTCAAG 59.073 41.667 0.00 0.00 38.22 3.02
290 291 4.800249 GCCCAAGATTTCATTGCAACTCAA 60.800 41.667 0.00 0.00 39.32 3.02
291 292 3.306225 GCCCAAGATTTCATTGCAACTCA 60.306 43.478 0.00 0.00 0.00 3.41
292 293 3.256558 GCCCAAGATTTCATTGCAACTC 58.743 45.455 0.00 0.00 0.00 3.01
293 294 2.027837 GGCCCAAGATTTCATTGCAACT 60.028 45.455 0.00 0.00 0.00 3.16
294 295 2.349590 GGCCCAAGATTTCATTGCAAC 58.650 47.619 0.00 0.00 0.00 4.17
295 296 1.067000 CGGCCCAAGATTTCATTGCAA 60.067 47.619 0.00 0.00 0.00 4.08
296 297 0.531657 CGGCCCAAGATTTCATTGCA 59.468 50.000 0.00 0.00 0.00 4.08
297 298 0.532115 ACGGCCCAAGATTTCATTGC 59.468 50.000 0.00 0.00 0.00 3.56
298 299 3.631686 TCATACGGCCCAAGATTTCATTG 59.368 43.478 0.00 0.00 0.00 2.82
299 300 3.897239 TCATACGGCCCAAGATTTCATT 58.103 40.909 0.00 0.00 0.00 2.57
300 301 3.576078 TCATACGGCCCAAGATTTCAT 57.424 42.857 0.00 0.00 0.00 2.57
301 302 3.013921 GTTCATACGGCCCAAGATTTCA 58.986 45.455 0.00 0.00 0.00 2.69
302 303 2.357952 GGTTCATACGGCCCAAGATTTC 59.642 50.000 0.00 0.00 0.00 2.17
303 304 2.375146 GGTTCATACGGCCCAAGATTT 58.625 47.619 0.00 0.00 0.00 2.17
304 305 1.745827 CGGTTCATACGGCCCAAGATT 60.746 52.381 0.00 0.00 0.00 2.40
305 306 0.179056 CGGTTCATACGGCCCAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
306 307 1.219664 CGGTTCATACGGCCCAAGA 59.780 57.895 0.00 0.00 0.00 3.02
307 308 0.176219 TACGGTTCATACGGCCCAAG 59.824 55.000 0.00 0.00 35.23 3.61
308 309 0.612229 TTACGGTTCATACGGCCCAA 59.388 50.000 0.00 0.00 35.23 4.12
309 310 0.612229 TTTACGGTTCATACGGCCCA 59.388 50.000 0.00 0.00 35.23 5.36
310 311 1.292992 CTTTACGGTTCATACGGCCC 58.707 55.000 0.00 0.00 35.23 5.80
311 312 0.654160 GCTTTACGGTTCATACGGCC 59.346 55.000 0.00 0.00 35.23 6.13
312 313 1.361793 TGCTTTACGGTTCATACGGC 58.638 50.000 0.00 0.00 35.23 5.68
313 314 3.454375 AGATGCTTTACGGTTCATACGG 58.546 45.455 0.00 0.00 35.23 4.02
314 315 3.179795 CGAGATGCTTTACGGTTCATACG 59.820 47.826 0.00 0.00 37.36 3.06
315 316 4.357142 TCGAGATGCTTTACGGTTCATAC 58.643 43.478 0.00 0.00 0.00 2.39
316 317 4.642445 TCGAGATGCTTTACGGTTCATA 57.358 40.909 0.00 0.00 0.00 2.15
317 318 3.520290 TCGAGATGCTTTACGGTTCAT 57.480 42.857 0.00 0.00 0.00 2.57
318 319 3.306917 TTCGAGATGCTTTACGGTTCA 57.693 42.857 0.00 0.00 0.00 3.18
319 320 4.092968 ACAATTCGAGATGCTTTACGGTTC 59.907 41.667 0.00 0.00 0.00 3.62
320 321 4.000988 ACAATTCGAGATGCTTTACGGTT 58.999 39.130 0.00 0.00 0.00 4.44
321 322 3.596214 ACAATTCGAGATGCTTTACGGT 58.404 40.909 0.00 0.00 0.00 4.83
322 323 3.616821 TGACAATTCGAGATGCTTTACGG 59.383 43.478 0.00 0.00 0.00 4.02
323 324 4.840401 TGACAATTCGAGATGCTTTACG 57.160 40.909 0.00 0.00 0.00 3.18
324 325 8.452989 AAAAATGACAATTCGAGATGCTTTAC 57.547 30.769 0.00 0.00 0.00 2.01
350 351 1.349688 GAGTGGTATGGGTGGTTGTGA 59.650 52.381 0.00 0.00 0.00 3.58
354 355 2.344592 TCTTGAGTGGTATGGGTGGTT 58.655 47.619 0.00 0.00 0.00 3.67
362 363 6.174720 TCTTCACTGTTTCTTGAGTGGTAT 57.825 37.500 0.00 0.00 40.11 2.73
374 375 6.757897 TTTGACACTCAATCTTCACTGTTT 57.242 33.333 0.00 0.00 36.11 2.83
409 410 7.781056 TGCTTCCTTTTTAGGCCTATAAAATG 58.219 34.615 23.38 19.06 35.24 2.32
415 419 4.862641 TCTGCTTCCTTTTTAGGCCTAT 57.137 40.909 14.74 0.00 0.00 2.57
420 424 7.702348 CCGAATAAAATCTGCTTCCTTTTTAGG 59.298 37.037 0.00 0.00 29.85 2.69
425 429 6.834168 TTCCGAATAAAATCTGCTTCCTTT 57.166 33.333 0.00 0.00 0.00 3.11
519 523 2.500229 GTTGTTTCCCGTTCCTGATCA 58.500 47.619 0.00 0.00 0.00 2.92
535 539 2.260434 CCGATCGTCCACCGTTGT 59.740 61.111 15.09 0.00 37.94 3.32
615 627 1.254026 GGTGGTAAAGGGGAACTTGC 58.746 55.000 0.00 0.00 39.96 4.01
621 633 1.080722 TAGGCGGTGGTAAAGGGGA 59.919 57.895 0.00 0.00 0.00 4.81
623 635 1.153509 CGTAGGCGGTGGTAAAGGG 60.154 63.158 0.00 0.00 0.00 3.95
725 745 0.178964 TTGGCCCAAGTGGAAAGGAG 60.179 55.000 0.00 0.00 37.39 3.69
726 746 0.178964 CTTGGCCCAAGTGGAAAGGA 60.179 55.000 15.63 0.00 36.79 3.36
752 772 1.381851 GGGATGGGGATGAGGATGC 59.618 63.158 0.00 0.00 0.00 3.91
768 788 1.077501 AATGAGGTGGCATGACGGG 60.078 57.895 0.00 0.00 0.00 5.28
771 791 0.257039 AGGGAATGAGGTGGCATGAC 59.743 55.000 0.00 0.00 0.00 3.06
811 833 1.079127 GACGGTGTGGGACCAGATG 60.079 63.158 0.00 0.00 46.55 2.90
812 834 1.535444 TGACGGTGTGGGACCAGAT 60.535 57.895 0.00 0.00 46.55 2.90
1242 1279 3.089284 CACCAAAACCTAGGGATGGAAC 58.911 50.000 27.20 0.00 0.00 3.62
1244 1281 1.005450 GCACCAAAACCTAGGGATGGA 59.995 52.381 27.20 0.00 0.00 3.41
1245 1282 1.005924 AGCACCAAAACCTAGGGATGG 59.994 52.381 21.70 21.70 0.00 3.51
1280 1317 1.454653 GCTATAACGGAAATCGCGACC 59.545 52.381 12.93 7.73 43.89 4.79
1324 1366 1.152525 AGGGGACGATATCAGCCGT 60.153 57.895 3.12 0.00 42.17 5.68
1326 1368 1.066573 CATCAGGGGACGATATCAGCC 60.067 57.143 3.12 2.99 0.00 4.85
1377 1419 2.655073 ATCCCACGGCGTGTCATCA 61.655 57.895 34.74 16.06 0.00 3.07
1486 1530 5.008980 TCAACCAATCAGCATATCACACAA 58.991 37.500 0.00 0.00 0.00 3.33
1496 1540 0.527113 CGCCAATCAACCAATCAGCA 59.473 50.000 0.00 0.00 0.00 4.41
1497 1541 0.803380 GCGCCAATCAACCAATCAGC 60.803 55.000 0.00 0.00 0.00 4.26
1596 1643 4.716784 TCAATTAGCTCTACATCCACACCT 59.283 41.667 0.00 0.00 0.00 4.00
1617 1664 3.008049 GGGGCAGAAAGTTCTTCTACTCA 59.992 47.826 0.00 0.00 34.74 3.41
1626 1675 3.368427 GCTATTTTGGGGGCAGAAAGTTC 60.368 47.826 0.00 0.00 0.00 3.01
1644 1694 3.809905 GCTTAGTTAGGCAGGTTGCTAT 58.190 45.455 0.67 0.00 44.28 2.97
1678 1728 4.382685 CCATACCAGTGACATAAACCGACT 60.383 45.833 0.00 0.00 0.00 4.18
1688 1738 1.357137 TTCCTGCCATACCAGTGACA 58.643 50.000 0.00 0.00 0.00 3.58
1736 1794 6.071051 AGCCCATTACGTTTCCATTAAACAAT 60.071 34.615 0.00 0.00 46.59 2.71
1756 1814 0.625316 ATATCACAACAGGCAGCCCA 59.375 50.000 8.22 0.00 0.00 5.36
1831 1889 5.820423 TCAAAAGAGGAAGACGACAATTTCA 59.180 36.000 0.00 0.00 0.00 2.69
1871 1929 6.346096 TCCCATTAGCTTTACACATCTACAC 58.654 40.000 0.00 0.00 0.00 2.90
1872 1930 6.553953 TCCCATTAGCTTTACACATCTACA 57.446 37.500 0.00 0.00 0.00 2.74
1873 1931 7.011482 CACTTCCCATTAGCTTTACACATCTAC 59.989 40.741 0.00 0.00 0.00 2.59
1874 1932 7.047891 CACTTCCCATTAGCTTTACACATCTA 58.952 38.462 0.00 0.00 0.00 1.98
1875 1933 5.882557 CACTTCCCATTAGCTTTACACATCT 59.117 40.000 0.00 0.00 0.00 2.90
1876 1934 5.449177 GCACTTCCCATTAGCTTTACACATC 60.449 44.000 0.00 0.00 0.00 3.06
1877 1935 4.399303 GCACTTCCCATTAGCTTTACACAT 59.601 41.667 0.00 0.00 0.00 3.21
1878 1936 3.756434 GCACTTCCCATTAGCTTTACACA 59.244 43.478 0.00 0.00 0.00 3.72
1879 1937 3.756434 TGCACTTCCCATTAGCTTTACAC 59.244 43.478 0.00 0.00 0.00 2.90
1880 1938 4.027674 TGCACTTCCCATTAGCTTTACA 57.972 40.909 0.00 0.00 0.00 2.41
1922 1980 2.242047 GCTTAGTTAGGCAGGTAGGC 57.758 55.000 0.00 0.00 44.61 3.93
1980 2045 1.144969 TGCTACAGCTTTCGGTTTCG 58.855 50.000 2.44 0.00 42.66 3.46
2047 2112 7.311408 GGTACCGACTAACCAATCACTATATC 58.689 42.308 0.00 0.00 35.73 1.63
2064 2129 1.735559 GTCCAACTGCGGTACCGAC 60.736 63.158 37.62 26.69 42.83 4.79
2123 2188 9.087424 CATCTACACTATGAGAAATCAAACGAA 57.913 33.333 0.00 0.00 0.00 3.85
2161 2232 5.007682 GGGGCAAAAGACTAATGTACTTCA 58.992 41.667 0.00 0.00 0.00 3.02
2174 2245 1.357420 TGCTATTCTGGGGGCAAAAGA 59.643 47.619 0.00 0.00 0.00 2.52
2336 2408 5.836024 ATAGGTCCAACTTCAGTACCAAA 57.164 39.130 0.00 0.00 32.43 3.28
2423 2495 2.205342 AGGCAGGTAGCTATTTTGGGA 58.795 47.619 0.00 0.00 44.79 4.37
2474 2546 1.324383 TCCTTGTCGTAGCAGTGACA 58.676 50.000 0.00 1.38 42.98 3.58
2487 2559 1.053424 TACAGCTTCCGGTTCCTTGT 58.947 50.000 0.00 4.04 0.00 3.16
2490 2562 0.834687 TGGTACAGCTTCCGGTTCCT 60.835 55.000 0.00 0.00 30.12 3.36
2538 2610 2.225091 ACACATGATGGAAGCCCTTTCA 60.225 45.455 0.00 0.00 37.54 2.69
2554 2626 5.121142 GCATTAAAGCAGCAATCAAACACAT 59.879 36.000 0.00 0.00 0.00 3.21
2687 2759 2.616510 GGCACTACACAGAGGCAAGATT 60.617 50.000 0.00 0.00 37.77 2.40
2725 2798 0.878086 CCTTAAGAGCTGCTAGGCGC 60.878 60.000 0.15 0.00 37.29 6.53
2737 2810 3.906720 ACGAAATGCCTAGCCTTAAGA 57.093 42.857 3.36 0.00 0.00 2.10
2769 2851 0.618981 AACTTAGGTGTGCCCTAGGC 59.381 55.000 2.05 0.00 46.62 3.93
2770 2852 1.679032 GCAACTTAGGTGTGCCCTAGG 60.679 57.143 0.06 0.06 46.62 3.02
2771 2853 1.279271 AGCAACTTAGGTGTGCCCTAG 59.721 52.381 0.00 0.00 46.62 3.02
2772 2854 1.358152 AGCAACTTAGGTGTGCCCTA 58.642 50.000 0.00 0.00 43.87 3.53
2774 2856 2.420058 ATAGCAACTTAGGTGTGCCC 57.580 50.000 0.00 0.00 34.57 5.36
2775 2857 4.941873 ACTTTATAGCAACTTAGGTGTGCC 59.058 41.667 0.00 0.00 0.00 5.01
2776 2858 5.411669 ACACTTTATAGCAACTTAGGTGTGC 59.588 40.000 0.00 0.00 34.72 4.57
2792 2904 5.759273 TGGCAAACTGTAACGTACACTTTAT 59.241 36.000 0.00 0.00 34.46 1.40
2814 2926 1.134401 CAGGTGTGCCAGGTAGTATGG 60.134 57.143 0.00 0.00 41.04 2.74
2880 2992 6.036083 CACACTCCGTCACTATTATTTCAAGG 59.964 42.308 0.00 0.00 0.00 3.61
2910 3022 1.838112 ATTTGATGCAGCGGGAGAAA 58.162 45.000 0.00 0.00 0.00 2.52
2911 3023 2.708216 TATTTGATGCAGCGGGAGAA 57.292 45.000 0.00 0.00 0.00 2.87
3043 3271 3.593096 CGCTCATATGATGGCTACACAT 58.407 45.455 5.72 0.00 0.00 3.21
3172 3400 5.950758 AAATACACTGTGCCACGATAAAA 57.049 34.783 7.90 0.00 0.00 1.52
3180 3408 3.181471 CCCAACAAAAATACACTGTGCCA 60.181 43.478 7.90 0.00 0.00 4.92
3187 3415 2.295070 ACCTCGCCCAACAAAAATACAC 59.705 45.455 0.00 0.00 0.00 2.90
3211 3439 3.141838 TCCTCTGGGCTCTAGAGATGAAT 59.858 47.826 24.24 0.00 43.41 2.57
3237 3465 5.827797 AGTACCTTGCAGAAGACAAAATTGA 59.172 36.000 0.00 0.00 0.00 2.57
3265 3493 5.534654 TGATATTTAATTACTGCAGCCCCAC 59.465 40.000 15.27 0.00 0.00 4.61
3301 3529 2.673862 GTTCCAAACAAACAAAACCCCG 59.326 45.455 0.00 0.00 0.00 5.73
3326 3554 9.019656 CATGTGTATTCTAGGCTTCTAGAGTAT 57.980 37.037 0.00 2.50 46.97 2.12
3346 3574 5.625568 TCCTGAATCAGATGATCATGTGT 57.374 39.130 26.80 13.02 34.15 3.72
3347 3575 6.486993 ACATTCCTGAATCAGATGATCATGTG 59.513 38.462 23.43 23.43 32.75 3.21
3401 3629 3.066621 TGTGTTTAAGTCTTGCAGCCTTG 59.933 43.478 0.00 0.00 0.00 3.61
3402 3630 3.066760 GTGTGTTTAAGTCTTGCAGCCTT 59.933 43.478 0.00 0.00 0.00 4.35
3403 3631 2.618709 GTGTGTTTAAGTCTTGCAGCCT 59.381 45.455 0.00 0.00 0.00 4.58
3404 3632 2.287608 GGTGTGTTTAAGTCTTGCAGCC 60.288 50.000 0.00 0.00 0.00 4.85
3405 3633 2.287608 GGGTGTGTTTAAGTCTTGCAGC 60.288 50.000 0.00 0.00 0.00 5.25
3489 3718 1.134250 CCACAAACCAAACCAAAGGGG 60.134 52.381 0.00 0.00 44.81 4.79
3508 3737 7.549615 AAGTAGGTTGCGATCTTAATAAACC 57.450 36.000 0.00 0.00 37.84 3.27
3509 3738 9.310716 ACTAAGTAGGTTGCGATCTTAATAAAC 57.689 33.333 0.00 0.00 0.00 2.01
3510 3739 9.880157 AACTAAGTAGGTTGCGATCTTAATAAA 57.120 29.630 0.00 0.00 0.00 1.40
3511 3740 9.880157 AAACTAAGTAGGTTGCGATCTTAATAA 57.120 29.630 0.00 0.00 30.71 1.40
3513 3742 9.530633 CTAAACTAAGTAGGTTGCGATCTTAAT 57.469 33.333 0.00 0.00 34.53 1.40
3514 3743 8.526147 ACTAAACTAAGTAGGTTGCGATCTTAA 58.474 33.333 0.00 0.00 34.53 1.85
3526 3755 8.672823 AAGGTTGTCAAACTAAACTAAGTAGG 57.327 34.615 2.89 0.00 36.48 3.18
3548 3777 4.362470 TCCTTGGATCATGAGCATAAGG 57.638 45.455 27.32 27.32 35.39 2.69
3592 3821 6.653320 GGAAAGACACAGTGTGAACCATATTA 59.347 38.462 29.58 0.00 36.96 0.98
3601 3830 2.618241 GCAATGGAAAGACACAGTGTGA 59.382 45.455 29.58 5.62 36.96 3.58
3603 3832 2.620115 CAGCAATGGAAAGACACAGTGT 59.380 45.455 5.68 5.68 35.34 3.55
3852 4085 1.288037 ACCTTTAGGGCTTCAATCCCC 59.712 52.381 0.00 0.00 45.03 4.81
3865 4098 6.405278 AACCAATTTCCAACAGACCTTTAG 57.595 37.500 0.00 0.00 0.00 1.85
3867 4100 5.692115 AAACCAATTTCCAACAGACCTTT 57.308 34.783 0.00 0.00 0.00 3.11
3869 4102 6.326323 ACATTAAACCAATTTCCAACAGACCT 59.674 34.615 0.00 0.00 0.00 3.85
3895 4128 7.062322 TGCATAAACTGGACAGATAATGGAAT 58.938 34.615 6.29 0.00 0.00 3.01
3899 4132 7.308408 CCATCTGCATAAACTGGACAGATAATG 60.308 40.741 6.29 7.13 44.19 1.90
3941 4174 2.419297 GCTCCACTGGTTCTGTAGGATG 60.419 54.545 0.00 0.00 0.00 3.51
4033 4268 6.403866 ACCAACAAAGCTGTCAAATTGATA 57.596 33.333 0.00 0.00 33.45 2.15
4036 4271 4.494526 GCAACCAACAAAGCTGTCAAATTG 60.495 41.667 0.00 0.00 33.45 2.32
4121 4357 7.330262 TGATGACAGCAATACAGAATTACAGA 58.670 34.615 0.00 0.00 0.00 3.41
4122 4358 7.493645 TCTGATGACAGCAATACAGAATTACAG 59.506 37.037 0.00 0.00 43.17 2.74
4123 4359 7.330262 TCTGATGACAGCAATACAGAATTACA 58.670 34.615 0.00 0.00 43.17 2.41
4124 4360 7.776933 TCTGATGACAGCAATACAGAATTAC 57.223 36.000 0.00 0.00 43.17 1.89
4125 4361 8.043113 ACTTCTGATGACAGCAATACAGAATTA 58.957 33.333 0.00 0.00 43.17 1.40
4126 4362 6.883217 ACTTCTGATGACAGCAATACAGAATT 59.117 34.615 0.00 0.00 43.17 2.17
4127 4363 6.413052 ACTTCTGATGACAGCAATACAGAAT 58.587 36.000 0.00 0.00 43.17 2.40
4128 4364 5.798132 ACTTCTGATGACAGCAATACAGAA 58.202 37.500 0.00 0.00 43.17 3.02
4138 4374 6.867662 AACAGGTTTTACTTCTGATGACAG 57.132 37.500 0.00 0.00 44.66 3.51
4169 4405 6.852420 TCTTGTTGCCTCTATACTACTGTT 57.148 37.500 0.00 0.00 0.00 3.16
4173 4409 5.041940 CCGTTCTTGTTGCCTCTATACTAC 58.958 45.833 0.00 0.00 0.00 2.73
4185 4421 0.594796 GGCAAGCACCGTTCTTGTTG 60.595 55.000 11.77 0.00 42.06 3.33
4201 4437 1.179152 CTCATGCAAATCCACAGGCA 58.821 50.000 0.00 0.00 41.00 4.75
4332 4652 8.909671 GCTATTTATGATCAAACTTTAGCATGC 58.090 33.333 10.51 10.51 29.77 4.06
4333 4653 9.955208 TGCTATTTATGATCAAACTTTAGCATG 57.045 29.630 18.76 0.00 32.57 4.06
4417 4739 2.800544 GTCACTACTTTCGAAGCAAGCA 59.199 45.455 0.00 0.00 0.00 3.91
4422 4744 2.338500 CCAGGTCACTACTTTCGAAGC 58.662 52.381 0.00 0.00 0.00 3.86
4651 4973 1.683943 GCTTATTGCAGGATCTGGCA 58.316 50.000 7.59 7.59 42.31 4.92
4714 5036 4.446385 GGGTTTTCAATGTTTTAGTTCGGC 59.554 41.667 0.00 0.00 0.00 5.54
4720 5042 4.694982 GCCATGGGGTTTTCAATGTTTTAG 59.305 41.667 15.13 0.00 36.17 1.85
4855 5180 0.662619 CAAAGACTCGCAACCAGCAA 59.337 50.000 0.00 0.00 46.13 3.91
4861 5186 1.594331 AGGGTTCAAAGACTCGCAAC 58.406 50.000 0.00 0.00 0.00 4.17
4886 5212 5.185454 CAGCACAAATACCATCTGTAGGAA 58.815 41.667 0.00 0.00 31.61 3.36
4888 5214 4.517285 ACAGCACAAATACCATCTGTAGG 58.483 43.478 0.00 0.00 33.56 3.18
4924 5346 1.299541 ATGCCTTGAGAATTACGCCG 58.700 50.000 0.00 0.00 0.00 6.46
4926 5348 2.423538 ACCAATGCCTTGAGAATTACGC 59.576 45.455 2.97 0.00 34.04 4.42
4928 5350 7.094377 TGTTTCTACCAATGCCTTGAGAATTAC 60.094 37.037 2.97 3.14 34.04 1.89
4937 5359 3.806949 TCCTGTTTCTACCAATGCCTT 57.193 42.857 0.00 0.00 0.00 4.35
4940 5362 3.071479 TCGTTCCTGTTTCTACCAATGC 58.929 45.455 0.00 0.00 0.00 3.56
5017 5439 4.342359 AGCCTTCATCTCAAGAGCAATTT 58.658 39.130 0.00 0.00 0.00 1.82
5019 5441 3.648507 AGCCTTCATCTCAAGAGCAAT 57.351 42.857 0.00 0.00 0.00 3.56
5026 5448 5.481824 TCTCTAACTCAAGCCTTCATCTCAA 59.518 40.000 0.00 0.00 0.00 3.02
5041 5463 3.326880 TCCCCCTGTTGTTTCTCTAACTC 59.673 47.826 0.00 0.00 37.64 3.01
5044 5466 4.508405 CCAATCCCCCTGTTGTTTCTCTAA 60.508 45.833 0.00 0.00 0.00 2.10
5110 5567 2.370189 CCAGGGAGGCTCCAACTATTAG 59.630 54.545 33.27 13.38 38.64 1.73
5113 5570 0.343372 TCCAGGGAGGCTCCAACTAT 59.657 55.000 33.27 11.75 38.64 2.12
5155 5626 1.144503 AGGAGGATGGATGAACATGCC 59.855 52.381 4.06 1.34 39.68 4.40
5184 5655 0.533308 TTTCTCCCGTCCAAACCGTG 60.533 55.000 0.00 0.00 0.00 4.94
5186 5657 0.533308 TGTTTCTCCCGTCCAAACCG 60.533 55.000 0.00 0.00 30.32 4.44
5188 5659 0.591659 GCTGTTTCTCCCGTCCAAAC 59.408 55.000 0.00 0.00 0.00 2.93
5213 5685 4.022503 TCCAGATTCAGCAGATAGACGATG 60.023 45.833 0.00 0.00 0.00 3.84
5444 5919 1.985116 GAGGAGCTTCGTGGACCCT 60.985 63.158 0.00 0.00 0.00 4.34
5506 5981 5.181009 CAGATACCTGAATCTTGCTTGTGA 58.819 41.667 0.00 0.00 43.02 3.58
5512 5987 3.311871 CAGCACAGATACCTGAATCTTGC 59.688 47.826 0.00 0.00 43.02 4.01
5555 6030 5.106237 GGTATGTATGATCGGTCACCTAGTC 60.106 48.000 0.00 0.00 37.14 2.59
5603 6078 4.631813 GGAAAGCCGATCACATCCATATAC 59.368 45.833 0.00 0.00 0.00 1.47
5694 6169 5.129634 TCCTTGTTCTGCAATGTCACTTTA 58.870 37.500 0.00 0.00 36.36 1.85
5728 6203 3.450578 TCGACCGGCACAACTAATATTC 58.549 45.455 0.00 0.00 0.00 1.75
5747 6222 1.859080 GCTTACCATCTAGCGGTTTCG 59.141 52.381 8.75 1.03 37.99 3.46
5749 6224 3.467803 GATGCTTACCATCTAGCGGTTT 58.532 45.455 8.75 0.00 45.58 3.27
5762 6237 2.605366 GGTTCGAGCTTCAGATGCTTAC 59.395 50.000 11.93 10.23 41.30 2.34
5778 6253 9.193133 CAAACTGATAGGTATATACAAGGTTCG 57.807 37.037 14.70 0.55 0.00 3.95
5782 6257 7.387948 GCACCAAACTGATAGGTATATACAAGG 59.612 40.741 14.70 3.80 33.49 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.