Multiple sequence alignment - TraesCS5D01G435600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G435600 chr5D 100.000 8516 0 0 1 8516 490502401 490510916 0.000000e+00 15727.0
1 TraesCS5D01G435600 chr5A 93.373 2837 120 19 3399 6180 612170671 612173494 0.000000e+00 4135.0
2 TraesCS5D01G435600 chr5A 90.181 3208 161 45 266 3372 612167196 612170350 0.000000e+00 4037.0
3 TraesCS5D01G435600 chr5A 95.184 706 31 2 6867 7569 612176732 612177437 0.000000e+00 1112.0
4 TraesCS5D01G435600 chr5A 93.966 696 39 1 6178 6870 612173597 612174292 0.000000e+00 1050.0
5 TraesCS5D01G435600 chr5A 81.672 622 74 24 7919 8513 612178253 612178861 1.660000e-131 481.0
6 TraesCS5D01G435600 chr5A 80.357 112 2 8 7566 7657 612177614 612177725 5.520000e-07 67.6
7 TraesCS5D01G435600 chr5B 94.250 2313 78 20 2164 4444 604998822 605001111 0.000000e+00 3483.0
8 TraesCS5D01G435600 chr5B 93.098 1362 54 9 824 2167 604997361 604998700 0.000000e+00 1958.0
9 TraesCS5D01G435600 chr5B 92.602 1149 63 5 5814 6941 605002535 605003682 0.000000e+00 1631.0
10 TraesCS5D01G435600 chr5B 94.633 708 30 8 5093 5796 605001690 605002393 0.000000e+00 1090.0
11 TraesCS5D01G435600 chr5B 88.908 586 30 11 4485 5037 605001109 605001692 0.000000e+00 689.0
12 TraesCS5D01G435600 chr5B 87.375 602 36 17 266 829 604994296 604994895 0.000000e+00 654.0
13 TraesCS5D01G435600 chr5B 90.220 409 21 9 7258 7658 605003891 605004288 4.560000e-142 516.0
14 TraesCS5D01G435600 chr5B 80.072 557 87 18 7964 8513 605005224 605005763 8.010000e-105 392.0
15 TraesCS5D01G435600 chr5B 97.183 213 5 1 7015 7227 605003680 605003891 8.130000e-95 359.0
16 TraesCS5D01G435600 chr5B 92.784 194 13 1 4910 5102 604992679 604992872 6.510000e-71 279.0
17 TraesCS5D01G435600 chr5B 90.323 155 8 6 28 180 604986216 604986365 6.740000e-46 196.0
18 TraesCS5D01G435600 chr5B 82.533 229 25 9 7667 7890 605004360 605004578 4.060000e-43 187.0
19 TraesCS5D01G435600 chr5B 89.000 100 9 2 180 278 604992106 604992204 1.160000e-23 122.0
20 TraesCS5D01G435600 chr4B 78.173 197 41 2 8210 8404 637628920 637629116 3.230000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G435600 chr5D 490502401 490510916 8515 False 15727.000000 15727 100.000000 1 8516 1 chr5D.!!$F1 8515
1 TraesCS5D01G435600 chr5A 612167196 612178861 11665 False 1813.766667 4135 89.122167 266 8513 6 chr5A.!!$F1 8247
2 TraesCS5D01G435600 chr5B 604992106 605005763 13657 False 946.666667 3483 90.221500 180 8513 12 chr5B.!!$F2 8333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.234625 GTCAAGCGATTTGTGTGCGA 59.765 50.000 0.00 0.00 38.01 5.10 F
411 2522 0.320421 CACGTCCCATTCTTCCACGT 60.320 55.000 0.00 0.00 44.21 4.49 F
1992 6644 0.320050 TTGCTGTCGCCATGTACAGA 59.680 50.000 18.94 6.34 44.79 3.41 F
2021 6679 0.580104 ACAAGAAGGACGCGAAAACG 59.420 50.000 15.93 0.00 39.50 3.60 F
3121 7976 1.003545 CCGTCTTGGAATAATGCTGCG 60.004 52.381 0.00 0.00 42.00 5.18 F
4816 10015 0.535102 ACAGCCAGACCAAAGGAACG 60.535 55.000 0.00 0.00 0.00 3.95 F
6575 12030 0.802222 CAGTGTCCCGATGTAGCGTG 60.802 60.000 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 6644 0.832135 TCCTTCTTGTCCGCCTCTGT 60.832 55.000 0.0 0.00 0.00 3.41 R
2392 7193 0.612732 TCCCTTCACCGTGTATCCGT 60.613 55.000 0.0 0.00 0.00 4.69 R
3587 8752 2.684881 CCAACAGCCACATAATCAGACC 59.315 50.000 0.0 0.00 0.00 3.85 R
4003 9168 1.080772 CATGCCTTGCACAGCACAG 60.081 57.895 11.8 4.79 43.04 3.66 R
4818 10017 0.827507 AACGGGAAGTGGCTGCATTT 60.828 50.000 0.5 0.00 0.00 2.32 R
6694 12149 2.735663 CTGAACTTCTGTAGCTGCACTG 59.264 50.000 0.0 2.87 0.00 3.66 R
7832 16191 0.030369 GTGGTATAGCGTCGGAGTGG 59.970 60.000 0.0 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.124921 CGGGCCGTCAAGCGATTT 61.125 61.111 19.97 0.00 44.77 2.17
32 33 2.485122 GGGCCGTCAAGCGATTTG 59.515 61.111 0.00 0.00 44.77 2.32
33 34 2.332654 GGGCCGTCAAGCGATTTGT 61.333 57.895 0.00 0.00 44.77 2.83
34 35 1.154225 GGCCGTCAAGCGATTTGTG 60.154 57.895 0.00 0.00 44.77 3.33
35 36 1.574428 GCCGTCAAGCGATTTGTGT 59.426 52.632 0.00 0.00 44.77 3.72
36 37 0.725784 GCCGTCAAGCGATTTGTGTG 60.726 55.000 0.00 0.00 44.77 3.82
37 38 0.725784 CCGTCAAGCGATTTGTGTGC 60.726 55.000 0.00 0.00 44.77 4.57
38 39 1.054348 CGTCAAGCGATTTGTGTGCG 61.054 55.000 0.00 0.00 44.77 5.34
39 40 0.234625 GTCAAGCGATTTGTGTGCGA 59.765 50.000 0.00 0.00 38.01 5.10
40 41 0.234625 TCAAGCGATTTGTGTGCGAC 59.765 50.000 0.00 0.00 38.01 5.19
41 42 1.054348 CAAGCGATTTGTGTGCGACG 61.054 55.000 0.00 0.00 31.92 5.12
42 43 1.218875 AAGCGATTTGTGTGCGACGA 61.219 50.000 0.00 0.00 0.00 4.20
43 44 1.507096 GCGATTTGTGTGCGACGAC 60.507 57.895 0.00 0.00 0.00 4.34
44 45 1.225104 CGATTTGTGTGCGACGACG 60.225 57.895 2.12 2.12 42.93 5.12
45 46 1.129809 GATTTGTGTGCGACGACGG 59.870 57.895 9.67 0.00 40.15 4.79
46 47 2.811893 GATTTGTGTGCGACGACGGC 62.812 60.000 9.67 0.00 40.15 5.68
47 48 4.578898 TTGTGTGCGACGACGGCT 62.579 61.111 9.67 0.00 40.15 5.52
48 49 2.680693 TTTGTGTGCGACGACGGCTA 62.681 55.000 9.67 0.00 40.15 3.93
49 50 2.874780 GTGTGCGACGACGGCTAG 60.875 66.667 9.67 0.00 40.15 3.42
50 51 3.051479 TGTGCGACGACGGCTAGA 61.051 61.111 9.67 0.00 40.15 2.43
51 52 2.576317 GTGCGACGACGGCTAGAC 60.576 66.667 9.67 0.00 40.15 2.59
52 53 3.807538 TGCGACGACGGCTAGACC 61.808 66.667 9.67 0.00 40.15 3.85
53 54 4.549516 GCGACGACGGCTAGACCC 62.550 72.222 9.67 0.00 40.15 4.46
71 72 3.294079 CGTGGTCCGGTTTTACAGT 57.706 52.632 0.00 0.00 0.00 3.55
72 73 1.585297 CGTGGTCCGGTTTTACAGTT 58.415 50.000 0.00 0.00 0.00 3.16
73 74 1.528161 CGTGGTCCGGTTTTACAGTTC 59.472 52.381 0.00 0.00 0.00 3.01
74 75 2.804212 CGTGGTCCGGTTTTACAGTTCT 60.804 50.000 0.00 0.00 0.00 3.01
75 76 2.804527 GTGGTCCGGTTTTACAGTTCTC 59.195 50.000 0.00 0.00 0.00 2.87
76 77 2.701951 TGGTCCGGTTTTACAGTTCTCT 59.298 45.455 0.00 0.00 0.00 3.10
77 78 3.243975 TGGTCCGGTTTTACAGTTCTCTC 60.244 47.826 0.00 0.00 0.00 3.20
78 79 3.324117 GTCCGGTTTTACAGTTCTCTCC 58.676 50.000 0.00 0.00 0.00 3.71
79 80 3.006644 GTCCGGTTTTACAGTTCTCTCCT 59.993 47.826 0.00 0.00 0.00 3.69
80 81 3.006537 TCCGGTTTTACAGTTCTCTCCTG 59.993 47.826 0.00 0.00 36.01 3.86
81 82 3.326747 CGGTTTTACAGTTCTCTCCTGG 58.673 50.000 0.00 0.00 34.16 4.45
82 83 3.676093 GGTTTTACAGTTCTCTCCTGGG 58.324 50.000 0.00 0.00 34.16 4.45
83 84 3.072622 GGTTTTACAGTTCTCTCCTGGGT 59.927 47.826 0.00 0.00 34.16 4.51
84 85 4.445879 GGTTTTACAGTTCTCTCCTGGGTT 60.446 45.833 0.00 0.00 34.16 4.11
85 86 5.131067 GTTTTACAGTTCTCTCCTGGGTTT 58.869 41.667 0.00 0.00 34.16 3.27
86 87 5.382664 TTTACAGTTCTCTCCTGGGTTTT 57.617 39.130 0.00 0.00 34.16 2.43
87 88 3.214696 ACAGTTCTCTCCTGGGTTTTG 57.785 47.619 0.00 0.00 34.16 2.44
88 89 1.882623 CAGTTCTCTCCTGGGTTTTGC 59.117 52.381 0.00 0.00 0.00 3.68
89 90 0.875059 GTTCTCTCCTGGGTTTTGCG 59.125 55.000 0.00 0.00 0.00 4.85
90 91 0.762418 TTCTCTCCTGGGTTTTGCGA 59.238 50.000 0.00 0.00 0.00 5.10
91 92 0.984230 TCTCTCCTGGGTTTTGCGAT 59.016 50.000 0.00 0.00 0.00 4.58
92 93 1.351017 TCTCTCCTGGGTTTTGCGATT 59.649 47.619 0.00 0.00 0.00 3.34
93 94 1.740025 CTCTCCTGGGTTTTGCGATTC 59.260 52.381 0.00 0.00 0.00 2.52
94 95 1.073125 TCTCCTGGGTTTTGCGATTCA 59.927 47.619 0.00 0.00 0.00 2.57
95 96 1.470098 CTCCTGGGTTTTGCGATTCAG 59.530 52.381 0.00 0.00 0.00 3.02
96 97 1.202879 TCCTGGGTTTTGCGATTCAGT 60.203 47.619 0.00 0.00 0.00 3.41
97 98 1.613437 CCTGGGTTTTGCGATTCAGTT 59.387 47.619 0.00 0.00 0.00 3.16
98 99 2.817258 CCTGGGTTTTGCGATTCAGTTA 59.183 45.455 0.00 0.00 0.00 2.24
99 100 3.365969 CCTGGGTTTTGCGATTCAGTTAC 60.366 47.826 0.00 0.00 0.00 2.50
100 101 2.224549 TGGGTTTTGCGATTCAGTTACG 59.775 45.455 0.00 0.00 0.00 3.18
101 102 2.481185 GGGTTTTGCGATTCAGTTACGA 59.519 45.455 0.00 0.00 0.00 3.43
102 103 3.058777 GGGTTTTGCGATTCAGTTACGAA 60.059 43.478 0.00 0.00 0.00 3.85
103 104 4.529446 GGTTTTGCGATTCAGTTACGAAA 58.471 39.130 0.00 0.00 0.00 3.46
104 105 4.377738 GGTTTTGCGATTCAGTTACGAAAC 59.622 41.667 0.00 0.00 35.72 2.78
106 107 5.412526 TTTGCGATTCAGTTACGAAACTT 57.587 34.783 0.00 0.00 43.60 2.66
107 108 4.640805 TGCGATTCAGTTACGAAACTTC 57.359 40.909 0.00 0.00 43.60 3.01
108 109 4.304110 TGCGATTCAGTTACGAAACTTCT 58.696 39.130 0.00 0.00 43.60 2.85
109 110 5.463286 TGCGATTCAGTTACGAAACTTCTA 58.537 37.500 0.00 0.00 43.60 2.10
110 111 5.344128 TGCGATTCAGTTACGAAACTTCTAC 59.656 40.000 0.00 0.00 43.60 2.59
111 112 5.572126 GCGATTCAGTTACGAAACTTCTACT 59.428 40.000 0.00 0.00 43.60 2.57
112 113 6.744537 GCGATTCAGTTACGAAACTTCTACTA 59.255 38.462 0.00 0.00 43.60 1.82
113 114 7.253256 GCGATTCAGTTACGAAACTTCTACTAC 60.253 40.741 0.00 0.00 43.60 2.73
114 115 7.961827 CGATTCAGTTACGAAACTTCTACTACT 59.038 37.037 0.00 0.00 43.60 2.57
118 119 9.664332 TCAGTTACGAAACTTCTACTACTATCT 57.336 33.333 0.00 0.00 43.60 1.98
119 120 9.919348 CAGTTACGAAACTTCTACTACTATCTC 57.081 37.037 0.00 0.00 43.60 2.75
120 121 9.889128 AGTTACGAAACTTCTACTACTATCTCT 57.111 33.333 0.00 0.00 43.60 3.10
124 125 9.452287 ACGAAACTTCTACTACTATCTCTCTTT 57.548 33.333 0.00 0.00 0.00 2.52
125 126 9.710979 CGAAACTTCTACTACTATCTCTCTTTG 57.289 37.037 0.00 0.00 0.00 2.77
168 169 7.913674 AACATGTGAAAGAAGATTCTACTCC 57.086 36.000 0.00 0.00 36.28 3.85
169 170 6.410540 ACATGTGAAAGAAGATTCTACTCCC 58.589 40.000 0.00 0.00 36.28 4.30
170 171 6.013379 ACATGTGAAAGAAGATTCTACTCCCA 60.013 38.462 0.00 0.00 36.28 4.37
171 172 6.042638 TGTGAAAGAAGATTCTACTCCCAG 57.957 41.667 0.00 0.00 36.28 4.45
172 173 5.544176 TGTGAAAGAAGATTCTACTCCCAGT 59.456 40.000 0.00 0.00 36.28 4.00
173 174 6.724441 TGTGAAAGAAGATTCTACTCCCAGTA 59.276 38.462 0.00 0.00 36.28 2.74
175 176 5.862678 AAGAAGATTCTACTCCCAGTAGC 57.137 43.478 5.90 0.00 45.93 3.58
176 177 5.137412 AGAAGATTCTACTCCCAGTAGCT 57.863 43.478 5.90 0.00 45.93 3.32
177 178 5.524535 AGAAGATTCTACTCCCAGTAGCTT 58.475 41.667 5.90 4.39 45.93 3.74
178 179 5.961421 AGAAGATTCTACTCCCAGTAGCTTT 59.039 40.000 5.90 0.00 45.93 3.51
182 183 6.841755 AGATTCTACTCCCAGTAGCTTTACAT 59.158 38.462 5.90 0.00 45.93 2.29
199 200 3.970332 TGGAGACACACAGGCACT 58.030 55.556 0.00 0.00 33.84 4.40
210 211 3.067091 AGGCACTGCTGTGAGGAG 58.933 61.111 25.94 0.81 46.55 3.69
282 2387 5.772521 AGATGCAAAACACAACTATTCACC 58.227 37.500 0.00 0.00 0.00 4.02
313 2418 1.342374 TGCTAGCCAGAGTCTCATCCA 60.342 52.381 13.29 0.00 0.00 3.41
344 2449 2.457813 AGCACATGCCCATGGATAAA 57.542 45.000 15.22 0.00 42.91 1.40
346 2451 1.342174 GCACATGCCCATGGATAAAGG 59.658 52.381 15.22 0.00 42.91 3.11
347 2452 2.948115 CACATGCCCATGGATAAAGGA 58.052 47.619 15.22 0.00 42.91 3.36
350 2460 1.208706 TGCCCATGGATAAAGGACGA 58.791 50.000 15.22 0.00 0.00 4.20
411 2522 0.320421 CACGTCCCATTCTTCCACGT 60.320 55.000 0.00 0.00 44.21 4.49
412 2523 0.320421 ACGTCCCATTCTTCCACGTG 60.320 55.000 9.08 9.08 41.90 4.49
526 2654 4.083862 GTCCTCTGTCCGTGCCCC 62.084 72.222 0.00 0.00 0.00 5.80
766 2931 6.481984 GTTACGCACGTACTCTTACTTATCT 58.518 40.000 1.73 0.00 0.00 1.98
848 5494 6.083487 AGGACCACCAGTATACTGTAGTAA 57.917 41.667 27.07 0.00 42.27 2.24
849 5495 6.127793 AGGACCACCAGTATACTGTAGTAAG 58.872 44.000 27.07 15.30 42.27 2.34
850 5496 5.890419 GGACCACCAGTATACTGTAGTAAGT 59.110 44.000 27.07 18.89 42.27 2.24
851 5497 7.056635 GGACCACCAGTATACTGTAGTAAGTA 58.943 42.308 27.07 0.00 42.27 2.24
987 5636 4.767255 CCCCACACGCTCAGGCTC 62.767 72.222 0.00 0.00 36.09 4.70
1278 5927 4.771356 GCCGCGTACGTGCTCTCA 62.771 66.667 23.00 0.00 37.70 3.27
1638 6287 3.558411 GCCGTCGCAGTGCTCATC 61.558 66.667 14.33 0.00 34.03 2.92
1956 6605 5.871396 ACCAGGTATTCAGGTGTACATAG 57.129 43.478 0.00 0.00 33.57 2.23
1992 6644 0.320050 TTGCTGTCGCCATGTACAGA 59.680 50.000 18.94 6.34 44.79 3.41
2021 6679 0.580104 ACAAGAAGGACGCGAAAACG 59.420 50.000 15.93 0.00 39.50 3.60
2037 6695 3.790177 CGGGAAATTCCGTCGACC 58.210 61.111 10.58 0.00 44.60 4.79
2100 6770 9.203421 CTAATTTGACCCATTTTTGTTAGGAAC 57.797 33.333 0.00 0.00 0.00 3.62
2105 6775 4.587262 ACCCATTTTTGTTAGGAACTCACC 59.413 41.667 0.00 0.00 41.75 4.02
2138 6808 5.163953 CGTTTGCTTAATCTGGTAGAGTGTG 60.164 44.000 0.00 0.00 0.00 3.82
2139 6809 5.483685 TTGCTTAATCTGGTAGAGTGTGT 57.516 39.130 0.00 0.00 0.00 3.72
2145 6815 2.239400 TCTGGTAGAGTGTGTGGTCTG 58.761 52.381 0.00 0.00 0.00 3.51
2191 6986 8.319146 ACATTTGTACTACTGCTACTACCAAAT 58.681 33.333 0.00 0.00 0.00 2.32
2287 7083 5.064325 GCATCTTTTGATCTTTTTCCATGGC 59.936 40.000 6.96 0.00 36.97 4.40
2357 7153 1.327303 CCAGGTAGTTTTTGCTGCCA 58.673 50.000 0.00 0.00 42.63 4.92
2359 7155 1.956477 CAGGTAGTTTTTGCTGCCAGT 59.044 47.619 0.00 0.00 42.63 4.00
2392 7193 7.450014 TGGTTGGCTTTCTGAAGATTATTGTTA 59.550 33.333 0.00 0.00 34.71 2.41
2437 7245 2.165998 GATGCCTCCTTCTTTTGCTGT 58.834 47.619 0.00 0.00 0.00 4.40
2438 7246 1.321474 TGCCTCCTTCTTTTGCTGTG 58.679 50.000 0.00 0.00 0.00 3.66
2537 7345 7.496346 TCTCCTCCATTTGTAAGTCACTAAT 57.504 36.000 0.00 0.00 33.57 1.73
2603 7437 6.207417 CCATAACATCCTTAATCCTTTCGCAT 59.793 38.462 0.00 0.00 0.00 4.73
2609 7443 5.118990 TCCTTAATCCTTTCGCATTCTCAG 58.881 41.667 0.00 0.00 0.00 3.35
2671 7505 8.936864 GGCGATATAGCAAAGTAATTTGAGTAT 58.063 33.333 19.18 15.24 39.27 2.12
2729 7575 3.023832 ACCTTTGGGTGACTTTGTTCTG 58.976 45.455 0.00 0.00 45.43 3.02
2828 7675 7.424452 GCCGTACGTTCATAAGTATTTTCTTTG 59.576 37.037 15.21 0.00 0.00 2.77
2906 7760 3.700538 TCAAGCTCATGGTGGCTTTAAT 58.299 40.909 15.16 0.00 45.03 1.40
3121 7976 1.003545 CCGTCTTGGAATAATGCTGCG 60.004 52.381 0.00 0.00 42.00 5.18
3196 8051 5.308825 AGAGTTTGGAATGGTAAGTCTGTG 58.691 41.667 0.00 0.00 31.99 3.66
3224 8079 6.421485 ACAGAAGATGATAAGATGCTTGGTT 58.579 36.000 0.00 0.00 0.00 3.67
3321 8178 6.599437 CCCTCACTAAATTTGAAACTGTACG 58.401 40.000 0.00 0.00 0.00 3.67
3493 8644 1.909700 AGTGGCATGTTTGTGGTAGG 58.090 50.000 0.00 0.00 0.00 3.18
3603 8768 7.685155 GCAAAATAATGGTCTGATTATGTGGCT 60.685 37.037 0.00 0.00 32.65 4.75
3607 8772 3.346315 TGGTCTGATTATGTGGCTGTTG 58.654 45.455 0.00 0.00 0.00 3.33
3674 8839 5.827797 ACAAAGCAGATGTTGGTTAGAGAAA 59.172 36.000 0.00 0.00 46.27 2.52
3970 9135 4.081917 GTCGAAGAGAACCTTGGAGATCTT 60.082 45.833 0.00 0.00 39.72 2.40
4003 9168 5.622378 GCTGTAGCTTACTTGAATGTTGAC 58.378 41.667 0.00 0.00 38.21 3.18
4088 9253 7.658167 TGATCGATGTTACAAGACAGGTAAAAA 59.342 33.333 0.54 0.00 32.94 1.94
4140 9305 5.373222 TGGCTCAAGTTCACTTTTAGCTAA 58.627 37.500 17.38 0.86 40.02 3.09
4205 9370 0.958382 GTACCTGCATGTTTCCCGCA 60.958 55.000 0.00 0.00 0.00 5.69
4244 9409 7.208080 AGTTAGCTTAACCATCGTTATGTAGG 58.792 38.462 0.00 0.00 39.47 3.18
4271 9436 1.588404 CATTACGACATCAGCGTCACC 59.412 52.381 0.00 0.00 42.62 4.02
4280 9445 1.214325 CAGCGTCACCGTGGTATGA 59.786 57.895 0.00 0.00 36.15 2.15
4507 9672 9.010029 TCTAGTTGCTCTAAAATGGTTAAAAGG 57.990 33.333 0.00 0.00 0.00 3.11
4509 9674 6.041523 AGTTGCTCTAAAATGGTTAAAAGGCA 59.958 34.615 0.00 0.00 0.00 4.75
4521 9687 6.512297 TGGTTAAAAGGCAAATGAGAGTTTC 58.488 36.000 0.00 0.00 0.00 2.78
4531 9697 2.595124 TGAGAGTTTCACAACAGCGA 57.405 45.000 0.00 0.00 35.05 4.93
4628 9794 9.823647 TGGTCTCATAATTTTCTTACTGATCTC 57.176 33.333 0.00 0.00 0.00 2.75
4680 9879 1.906574 GGGACAGACATAGTGTTCCCA 59.093 52.381 11.61 0.00 37.59 4.37
4816 10015 0.535102 ACAGCCAGACCAAAGGAACG 60.535 55.000 0.00 0.00 0.00 3.95
4818 10017 1.896660 GCCAGACCAAAGGAACGCA 60.897 57.895 0.00 0.00 0.00 5.24
4869 10068 8.147704 TGATGTGTATTTCTAATCCGAGCAATA 58.852 33.333 0.00 0.00 0.00 1.90
4872 10071 7.652105 TGTGTATTTCTAATCCGAGCAATACTC 59.348 37.037 7.24 5.03 36.84 2.59
4873 10072 7.116519 GTGTATTTCTAATCCGAGCAATACTCC 59.883 40.741 7.24 0.00 43.01 3.85
5217 10416 2.890808 TGGTCTTACCGATCATGCTC 57.109 50.000 0.00 0.00 42.58 4.26
5233 10433 1.999735 TGCTCGCGTAATTCAGAAAGG 59.000 47.619 5.77 0.00 0.00 3.11
5236 10436 3.120304 GCTCGCGTAATTCAGAAAGGTTT 60.120 43.478 5.77 0.00 0.00 3.27
5239 10439 3.435671 CGCGTAATTCAGAAAGGTTTCCT 59.564 43.478 0.00 0.00 37.92 3.36
5254 10454 2.113860 TTCCTCCTCATTTTGCCTCG 57.886 50.000 0.00 0.00 0.00 4.63
5286 10486 5.483811 TCTTTGCTAATGTAATCACGGACA 58.516 37.500 0.00 0.00 0.00 4.02
5596 10797 5.843969 TCAGCATATATGTAGTTTGAGGGGA 59.156 40.000 14.14 0.00 0.00 4.81
5624 10826 8.942338 AAACTGTCCTTTTTCCAAATAGAAAC 57.058 30.769 0.00 0.00 35.53 2.78
5887 11218 5.657474 TCTATCTTTTCATACCACGTGTCC 58.343 41.667 15.65 0.00 0.00 4.02
5920 11264 8.078060 TCTGTTAATCATCATCACTAACCAGA 57.922 34.615 0.00 0.00 0.00 3.86
5946 11290 7.839705 AGTACTACTGATACAGAATTTCCTGGA 59.160 37.037 5.76 0.00 38.44 3.86
6167 11511 5.984926 TGACTGGTGCTTGAAAAATGATTTC 59.015 36.000 0.00 0.00 0.00 2.17
6181 11525 6.389830 AAATGATTTCCGCAAGCATGTATA 57.610 33.333 0.00 0.00 40.78 1.47
6371 11820 7.511268 AGCATATTCATTATTGTTGGGCATTT 58.489 30.769 0.00 0.00 0.00 2.32
6391 11840 7.335422 GGCATTTCTTTCTCTGTCTTCATAAGA 59.665 37.037 0.00 0.00 34.51 2.10
6396 11845 8.298729 TCTTTCTCTGTCTTCATAAGATGCTA 57.701 34.615 0.00 0.00 40.18 3.49
6454 11903 4.883759 TCCAGATCAGGGATTAACTCTCA 58.116 43.478 4.05 0.00 0.00 3.27
6456 11905 5.907662 TCCAGATCAGGGATTAACTCTCATT 59.092 40.000 4.05 0.00 0.00 2.57
6526 11978 4.261741 GCAAATCTGGTCTGTCAAACACAT 60.262 41.667 0.00 0.00 33.23 3.21
6574 12029 1.248785 ACAGTGTCCCGATGTAGCGT 61.249 55.000 0.00 0.00 0.00 5.07
6575 12030 0.802222 CAGTGTCCCGATGTAGCGTG 60.802 60.000 0.00 0.00 0.00 5.34
6628 12083 9.104965 GTAACATTACAGGAGCATACAAATGTA 57.895 33.333 0.00 0.00 35.61 2.29
6652 12107 4.558226 TGCTGACAGGATGAACAATAGT 57.442 40.909 4.26 0.00 39.69 2.12
6703 12158 2.753452 CAATGATCTTTCCAGTGCAGCT 59.247 45.455 0.00 0.00 0.00 4.24
6730 12185 2.979678 AGTTCAGAAGGAGGCAAAGGTA 59.020 45.455 0.00 0.00 0.00 3.08
6735 12190 3.441572 CAGAAGGAGGCAAAGGTATGTTG 59.558 47.826 0.00 0.00 0.00 3.33
6746 12201 5.007724 GCAAAGGTATGTTGAGGCTATACAC 59.992 44.000 7.30 0.00 0.00 2.90
6787 12242 8.133024 TCCTTTGTATTGCTCCATTGTAATTT 57.867 30.769 0.00 0.00 0.00 1.82
6789 12244 9.218440 CCTTTGTATTGCTCCATTGTAATTTTT 57.782 29.630 0.00 0.00 0.00 1.94
6810 12265 5.866335 TTTGTTCGTGTACTTGTGTTTCT 57.134 34.783 0.00 0.00 0.00 2.52
6831 12286 8.476925 GTTTCTTATTTTCGTTTGGACATTGTC 58.523 33.333 8.34 8.34 0.00 3.18
6850 12305 0.947244 CGGGCTCCAAGAATATGCAC 59.053 55.000 0.00 0.00 0.00 4.57
6925 14825 2.431419 TGACCACTGAGTTACCGTTGAA 59.569 45.455 0.00 0.00 0.00 2.69
6980 14882 0.690762 AACACTATCAGGCCACGGTT 59.309 50.000 5.01 0.00 0.00 4.44
7007 14909 6.889198 TGAAATGGTTTGGGTGTGAAATTTA 58.111 32.000 0.00 0.00 0.00 1.40
7014 14916 5.941555 TTGGGTGTGAAATTTAGTGGTTT 57.058 34.783 0.00 0.00 0.00 3.27
7115 15017 0.878523 TGTTGAACGACCGCCTTCTG 60.879 55.000 0.00 0.00 0.00 3.02
7223 15125 0.390209 GCAACAATGGCGCCAAGAAT 60.390 50.000 36.33 15.14 0.00 2.40
7247 15149 9.988815 AATAACTTGATCATATTTCTAGCGACT 57.011 29.630 0.00 0.00 0.00 4.18
7277 15180 4.098807 ACGCCTTTCCAACAACAGTTTATT 59.901 37.500 0.00 0.00 0.00 1.40
7282 15185 7.148323 GCCTTTCCAACAACAGTTTATTTGTTT 60.148 33.333 0.00 0.00 42.04 2.83
7338 15241 1.226435 CGAGCTCTCGTTCTTCCCG 60.226 63.158 12.85 0.00 46.99 5.14
7485 15388 1.599606 TTGGCGCACACAACAAACCT 61.600 50.000 10.83 0.00 0.00 3.50
7569 15472 6.863275 TGTTTCTCGTAGAAATGAGAGCATA 58.137 36.000 11.46 0.00 46.09 3.14
7594 15679 1.383799 CAGTTTCCCCCTGCCATGA 59.616 57.895 0.00 0.00 0.00 3.07
7595 15680 0.032813 CAGTTTCCCCCTGCCATGAT 60.033 55.000 0.00 0.00 0.00 2.45
7596 15681 0.712380 AGTTTCCCCCTGCCATGATT 59.288 50.000 0.00 0.00 0.00 2.57
7597 15682 1.114627 GTTTCCCCCTGCCATGATTC 58.885 55.000 0.00 0.00 0.00 2.52
7601 15695 0.105862 CCCCCTGCCATGATTCACAT 60.106 55.000 0.00 0.00 40.17 3.21
7632 15726 2.034879 AGTCAGGCATTCCAACGCG 61.035 57.895 3.53 3.53 33.74 6.01
7659 15762 1.265905 CAAAACGCCGCTAAACTTCCT 59.734 47.619 0.00 0.00 0.00 3.36
7660 15763 0.872388 AAACGCCGCTAAACTTCCTG 59.128 50.000 0.00 0.00 0.00 3.86
7661 15764 1.574702 AACGCCGCTAAACTTCCTGC 61.575 55.000 0.00 0.00 0.00 4.85
7662 15765 2.032634 CGCCGCTAAACTTCCTGCA 61.033 57.895 0.00 0.00 0.00 4.41
7664 15767 0.596082 GCCGCTAAACTTCCTGCAAA 59.404 50.000 0.00 0.00 0.00 3.68
7665 15768 1.666023 GCCGCTAAACTTCCTGCAAAC 60.666 52.381 0.00 0.00 0.00 2.93
7709 15880 3.366052 AACTTGGAGAGGTTTGTGTGT 57.634 42.857 0.00 0.00 0.00 3.72
7712 15883 2.799126 TGGAGAGGTTTGTGTGTGTT 57.201 45.000 0.00 0.00 0.00 3.32
7713 15884 2.639065 TGGAGAGGTTTGTGTGTGTTC 58.361 47.619 0.00 0.00 0.00 3.18
7770 16107 2.293399 CAGAAACACCACAAAGCCCTAC 59.707 50.000 0.00 0.00 0.00 3.18
7783 16120 0.696501 GCCCTACTTTTGTCCCTCCA 59.303 55.000 0.00 0.00 0.00 3.86
7788 16125 0.771755 ACTTTTGTCCCTCCACCCTC 59.228 55.000 0.00 0.00 0.00 4.30
7821 16160 0.822532 AGTCTGAGACCGACACCGTT 60.823 55.000 9.33 0.00 33.89 4.44
7831 16190 2.509845 GACACCGTTGTCGTACCAC 58.490 57.895 0.00 0.00 42.86 4.16
7832 16191 0.940991 GACACCGTTGTCGTACCACC 60.941 60.000 0.00 0.00 42.86 4.61
7833 16192 1.665599 CACCGTTGTCGTACCACCC 60.666 63.158 0.00 0.00 35.01 4.61
7834 16193 2.132996 ACCGTTGTCGTACCACCCA 61.133 57.895 0.00 0.00 35.01 4.51
7835 16194 1.665599 CCGTTGTCGTACCACCCAC 60.666 63.158 0.00 0.00 35.01 4.61
7836 16195 1.364901 CGTTGTCGTACCACCCACT 59.635 57.895 0.00 0.00 0.00 4.00
7837 16196 0.665369 CGTTGTCGTACCACCCACTC 60.665 60.000 0.00 0.00 0.00 3.51
7838 16197 0.320160 GTTGTCGTACCACCCACTCC 60.320 60.000 0.00 0.00 0.00 3.85
7839 16198 1.808531 TTGTCGTACCACCCACTCCG 61.809 60.000 0.00 0.00 0.00 4.63
7840 16199 1.973281 GTCGTACCACCCACTCCGA 60.973 63.158 0.00 0.00 0.00 4.55
7841 16200 1.973281 TCGTACCACCCACTCCGAC 60.973 63.158 0.00 0.00 0.00 4.79
7842 16201 2.570181 GTACCACCCACTCCGACG 59.430 66.667 0.00 0.00 0.00 5.12
7843 16202 3.376078 TACCACCCACTCCGACGC 61.376 66.667 0.00 0.00 0.00 5.19
7844 16203 3.873679 TACCACCCACTCCGACGCT 62.874 63.158 0.00 0.00 0.00 5.07
7845 16204 2.482796 TACCACCCACTCCGACGCTA 62.483 60.000 0.00 0.00 0.00 4.26
7846 16205 2.423898 CCACCCACTCCGACGCTAT 61.424 63.158 0.00 0.00 0.00 2.97
7847 16206 1.105167 CCACCCACTCCGACGCTATA 61.105 60.000 0.00 0.00 0.00 1.31
7848 16207 0.030369 CACCCACTCCGACGCTATAC 59.970 60.000 0.00 0.00 0.00 1.47
7849 16208 1.105759 ACCCACTCCGACGCTATACC 61.106 60.000 0.00 0.00 0.00 2.73
7850 16209 1.105167 CCCACTCCGACGCTATACCA 61.105 60.000 0.00 0.00 0.00 3.25
7857 16216 0.458669 CGACGCTATACCACCCACTT 59.541 55.000 0.00 0.00 0.00 3.16
7858 16217 1.134907 CGACGCTATACCACCCACTTT 60.135 52.381 0.00 0.00 0.00 2.66
7894 16275 2.753043 GACCTCCGTCGCTACCCA 60.753 66.667 0.00 0.00 0.00 4.51
7920 16301 4.254492 GTCTGACACAAGGTTAGAATCCC 58.746 47.826 2.24 0.00 42.97 3.85
7921 16302 3.263425 TCTGACACAAGGTTAGAATCCCC 59.737 47.826 0.00 0.00 38.99 4.81
7922 16303 3.256704 TGACACAAGGTTAGAATCCCCT 58.743 45.455 0.00 0.00 0.00 4.79
7923 16304 3.009033 TGACACAAGGTTAGAATCCCCTG 59.991 47.826 0.00 0.00 0.00 4.45
7959 16377 4.278956 CGACTTGCGGCCTTACTT 57.721 55.556 0.00 0.00 36.03 2.24
7960 16378 1.787847 CGACTTGCGGCCTTACTTG 59.212 57.895 0.00 0.00 36.03 3.16
7966 16897 2.989881 GCGGCCTTACTTGCAACCC 61.990 63.158 0.00 0.00 0.00 4.11
7972 16903 1.073923 CCTTACTTGCAACCCTGGTCT 59.926 52.381 0.00 0.00 0.00 3.85
7978 16909 2.113139 CAACCCTGGTCTTGCCGT 59.887 61.111 0.00 0.00 41.21 5.68
7990 16921 1.001181 TCTTGCCGTAACACAGGTACC 59.999 52.381 2.73 2.73 0.00 3.34
7996 16927 0.108472 GTAACACAGGTACCCTCCGC 60.108 60.000 8.74 0.00 0.00 5.54
8024 16956 1.733912 CATTGTGGTCCATGACAGACG 59.266 52.381 0.00 0.00 34.97 4.18
8045 16977 1.013596 CACGTCTGGCAAGTGTTCAA 58.986 50.000 8.64 0.00 0.00 2.69
8060 16992 6.199937 AGTGTTCAATCAAATGTCATAGCC 57.800 37.500 0.00 0.00 0.00 3.93
8113 17045 9.097257 CTTTAAAGTGAACACAATGAATTTGGT 57.903 29.630 7.07 0.00 39.80 3.67
8127 17059 5.690865 TGAATTTGGTTGTGGAGTACTTCT 58.309 37.500 2.07 0.00 0.00 2.85
8145 17077 3.452755 TCTATGTCGCGTTCATGGATT 57.547 42.857 20.79 5.95 30.16 3.01
8147 17079 2.022764 ATGTCGCGTTCATGGATTCA 57.977 45.000 5.77 0.00 0.00 2.57
8155 17087 2.570135 GTTCATGGATTCAGCCTCCTC 58.430 52.381 0.00 0.00 33.69 3.71
8176 17108 3.012518 CAGATGAGGGTGAAATGGTGAC 58.987 50.000 0.00 0.00 0.00 3.67
8194 17126 0.662619 ACGATGCATGCGGTTATTGG 59.337 50.000 14.09 0.27 0.00 3.16
8310 17264 3.519107 TCCCTGATGTGCTATTTGAGTCA 59.481 43.478 0.00 0.00 0.00 3.41
8317 17271 7.315142 TGATGTGCTATTTGAGTCATTTTTCC 58.685 34.615 0.00 0.00 0.00 3.13
8330 17284 0.603172 TTTTTCCGCCGTCGATTCCA 60.603 50.000 0.00 0.00 38.10 3.53
8348 17302 4.142609 TCCAGATGAGCCAAAGTGTATC 57.857 45.455 0.00 0.00 0.00 2.24
8349 17303 3.118261 TCCAGATGAGCCAAAGTGTATCC 60.118 47.826 0.00 0.00 0.00 2.59
8350 17304 3.370846 CCAGATGAGCCAAAGTGTATCCA 60.371 47.826 0.00 0.00 0.00 3.41
8386 17340 0.178970 TCTCCGGGCCTATGAGTACC 60.179 60.000 0.84 0.00 0.00 3.34
8392 17346 1.416772 GGGCCTATGAGTACCACTTCC 59.583 57.143 0.84 0.00 0.00 3.46
8413 17367 3.238108 TCTTAAAGAAGAGCAGCCGAG 57.762 47.619 0.00 0.00 36.75 4.63
8414 17368 2.826128 TCTTAAAGAAGAGCAGCCGAGA 59.174 45.455 0.00 0.00 36.75 4.04
8415 17369 3.449018 TCTTAAAGAAGAGCAGCCGAGAT 59.551 43.478 0.00 0.00 36.75 2.75
8420 17374 1.615883 GAAGAGCAGCCGAGATATGGA 59.384 52.381 0.00 0.00 0.00 3.41
8421 17375 1.255882 AGAGCAGCCGAGATATGGAG 58.744 55.000 0.00 0.00 0.00 3.86
8422 17376 0.246086 GAGCAGCCGAGATATGGAGG 59.754 60.000 0.00 0.00 0.00 4.30
8423 17377 0.178950 AGCAGCCGAGATATGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
8424 17378 0.246086 GCAGCCGAGATATGGAGGAG 59.754 60.000 0.00 0.00 0.00 3.69
8425 17379 0.894141 CAGCCGAGATATGGAGGAGG 59.106 60.000 0.00 0.00 0.00 4.30
8426 17380 0.902516 AGCCGAGATATGGAGGAGGC 60.903 60.000 0.00 0.00 43.07 4.70
8427 17381 1.188219 GCCGAGATATGGAGGAGGCA 61.188 60.000 0.00 0.00 42.37 4.75
8428 17382 1.566211 CCGAGATATGGAGGAGGCAT 58.434 55.000 0.00 0.00 0.00 4.40
8429 17383 1.480137 CCGAGATATGGAGGAGGCATC 59.520 57.143 0.00 0.00 0.00 3.91
8441 17395 2.663188 GGCATCCGATGACGAGCC 60.663 66.667 12.79 1.74 42.66 4.70
8474 17428 3.649986 GCAGGCGCACTTCAACGT 61.650 61.111 10.83 0.00 38.36 3.99
8493 17447 1.522355 CGTCATGGCGGAAGAGCAT 60.522 57.895 12.98 0.00 39.27 3.79
8513 17467 1.209127 CGAATGCAAACGTGGGACC 59.791 57.895 0.00 0.00 0.00 4.46
8514 17468 1.584495 GAATGCAAACGTGGGACCC 59.416 57.895 2.45 2.45 0.00 4.46
8515 17469 0.893727 GAATGCAAACGTGGGACCCT 60.894 55.000 13.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.124921 AAATCGCTTGACGGCCCG 61.125 61.111 0.00 0.00 43.89 6.13
15 16 2.332654 ACAAATCGCTTGACGGCCC 61.333 57.895 0.00 0.00 43.89 5.80
16 17 1.154225 CACAAATCGCTTGACGGCC 60.154 57.895 0.00 0.00 43.89 6.13
17 18 0.725784 CACACAAATCGCTTGACGGC 60.726 55.000 4.34 0.00 43.89 5.68
18 19 0.725784 GCACACAAATCGCTTGACGG 60.726 55.000 4.34 0.00 43.89 4.79
19 20 1.054348 CGCACACAAATCGCTTGACG 61.054 55.000 4.34 0.00 45.62 4.35
20 21 0.234625 TCGCACACAAATCGCTTGAC 59.765 50.000 4.34 0.00 38.50 3.18
21 22 0.234625 GTCGCACACAAATCGCTTGA 59.765 50.000 4.34 0.00 38.50 3.02
22 23 1.054348 CGTCGCACACAAATCGCTTG 61.054 55.000 0.00 0.00 41.19 4.01
23 24 1.204062 CGTCGCACACAAATCGCTT 59.796 52.632 0.00 0.00 0.00 4.68
24 25 1.663388 TCGTCGCACACAAATCGCT 60.663 52.632 0.00 0.00 0.00 4.93
25 26 1.507096 GTCGTCGCACACAAATCGC 60.507 57.895 0.00 0.00 0.00 4.58
26 27 1.225104 CGTCGTCGCACACAAATCG 60.225 57.895 0.00 0.00 0.00 3.34
27 28 1.129809 CCGTCGTCGCACACAAATC 59.870 57.895 0.00 0.00 35.54 2.17
28 29 2.950172 GCCGTCGTCGCACACAAAT 61.950 57.895 0.00 0.00 35.54 2.32
29 30 2.680693 TAGCCGTCGTCGCACACAAA 62.681 55.000 0.00 0.00 35.54 2.83
30 31 3.196913 TAGCCGTCGTCGCACACAA 62.197 57.895 0.00 0.00 35.54 3.33
31 32 3.604494 CTAGCCGTCGTCGCACACA 62.604 63.158 0.00 0.00 35.54 3.72
32 33 2.874780 CTAGCCGTCGTCGCACAC 60.875 66.667 0.00 0.00 35.54 3.82
33 34 3.051479 TCTAGCCGTCGTCGCACA 61.051 61.111 0.00 0.00 35.54 4.57
34 35 2.576317 GTCTAGCCGTCGTCGCAC 60.576 66.667 0.00 0.00 35.54 5.34
35 36 3.807538 GGTCTAGCCGTCGTCGCA 61.808 66.667 0.00 0.00 35.54 5.10
36 37 4.549516 GGGTCTAGCCGTCGTCGC 62.550 72.222 0.00 0.00 38.44 5.19
37 38 4.233635 CGGGTCTAGCCGTCGTCG 62.234 72.222 12.30 0.00 38.44 5.12
38 39 3.130160 ACGGGTCTAGCCGTCGTC 61.130 66.667 19.77 0.00 38.29 4.20
39 40 3.437795 CACGGGTCTAGCCGTCGT 61.438 66.667 22.31 6.58 40.82 4.34
40 41 4.189188 CCACGGGTCTAGCCGTCG 62.189 72.222 22.31 13.29 40.82 5.12
41 42 3.066814 ACCACGGGTCTAGCCGTC 61.067 66.667 22.31 0.00 40.82 4.79
53 54 1.528161 GAACTGTAAAACCGGACCACG 59.472 52.381 9.46 0.10 43.80 4.94
54 55 2.804527 GAGAACTGTAAAACCGGACCAC 59.195 50.000 9.46 0.27 0.00 4.16
55 56 2.701951 AGAGAACTGTAAAACCGGACCA 59.298 45.455 9.46 0.00 0.00 4.02
56 57 3.324117 GAGAGAACTGTAAAACCGGACC 58.676 50.000 9.46 0.00 0.00 4.46
57 58 3.006644 AGGAGAGAACTGTAAAACCGGAC 59.993 47.826 9.46 0.00 0.00 4.79
58 59 3.006537 CAGGAGAGAACTGTAAAACCGGA 59.993 47.826 9.46 0.00 0.00 5.14
59 60 3.326747 CAGGAGAGAACTGTAAAACCGG 58.673 50.000 0.00 0.00 0.00 5.28
60 61 3.326747 CCAGGAGAGAACTGTAAAACCG 58.673 50.000 0.00 0.00 34.16 4.44
61 62 3.072622 ACCCAGGAGAGAACTGTAAAACC 59.927 47.826 0.00 0.00 34.16 3.27
62 63 4.353383 ACCCAGGAGAGAACTGTAAAAC 57.647 45.455 0.00 0.00 34.16 2.43
63 64 5.382664 AAACCCAGGAGAGAACTGTAAAA 57.617 39.130 0.00 0.00 34.16 1.52
64 65 5.130350 CAAAACCCAGGAGAGAACTGTAAA 58.870 41.667 0.00 0.00 34.16 2.01
65 66 4.714632 CAAAACCCAGGAGAGAACTGTAA 58.285 43.478 0.00 0.00 34.16 2.41
66 67 3.496160 GCAAAACCCAGGAGAGAACTGTA 60.496 47.826 0.00 0.00 34.16 2.74
67 68 2.749800 GCAAAACCCAGGAGAGAACTGT 60.750 50.000 0.00 0.00 34.16 3.55
68 69 1.882623 GCAAAACCCAGGAGAGAACTG 59.117 52.381 0.00 0.00 35.74 3.16
69 70 1.543429 CGCAAAACCCAGGAGAGAACT 60.543 52.381 0.00 0.00 0.00 3.01
70 71 0.875059 CGCAAAACCCAGGAGAGAAC 59.125 55.000 0.00 0.00 0.00 3.01
71 72 0.762418 TCGCAAAACCCAGGAGAGAA 59.238 50.000 0.00 0.00 0.00 2.87
72 73 0.984230 ATCGCAAAACCCAGGAGAGA 59.016 50.000 0.00 0.00 0.00 3.10
73 74 1.740025 GAATCGCAAAACCCAGGAGAG 59.260 52.381 0.00 0.00 0.00 3.20
74 75 1.073125 TGAATCGCAAAACCCAGGAGA 59.927 47.619 0.00 0.00 0.00 3.71
75 76 1.470098 CTGAATCGCAAAACCCAGGAG 59.530 52.381 0.00 0.00 0.00 3.69
76 77 1.202879 ACTGAATCGCAAAACCCAGGA 60.203 47.619 0.00 0.00 0.00 3.86
77 78 1.247567 ACTGAATCGCAAAACCCAGG 58.752 50.000 0.00 0.00 0.00 4.45
78 79 3.666902 CGTAACTGAATCGCAAAACCCAG 60.667 47.826 0.00 0.00 0.00 4.45
79 80 2.224549 CGTAACTGAATCGCAAAACCCA 59.775 45.455 0.00 0.00 0.00 4.51
80 81 2.481185 TCGTAACTGAATCGCAAAACCC 59.519 45.455 0.00 0.00 0.00 4.11
81 82 3.799137 TCGTAACTGAATCGCAAAACC 57.201 42.857 0.00 0.00 0.00 3.27
82 83 5.202640 AGTTTCGTAACTGAATCGCAAAAC 58.797 37.500 6.64 0.00 42.91 2.43
83 84 5.412526 AGTTTCGTAACTGAATCGCAAAA 57.587 34.783 6.64 0.00 42.91 2.44
84 85 5.235616 AGAAGTTTCGTAACTGAATCGCAAA 59.764 36.000 8.28 0.00 43.74 3.68
85 86 4.748102 AGAAGTTTCGTAACTGAATCGCAA 59.252 37.500 8.28 0.00 43.74 4.85
86 87 4.304110 AGAAGTTTCGTAACTGAATCGCA 58.696 39.130 8.28 0.00 43.74 5.10
87 88 4.905412 AGAAGTTTCGTAACTGAATCGC 57.095 40.909 8.28 0.00 43.74 4.58
88 89 7.961827 AGTAGTAGAAGTTTCGTAACTGAATCG 59.038 37.037 8.28 0.00 43.74 3.34
92 93 9.664332 AGATAGTAGTAGAAGTTTCGTAACTGA 57.336 33.333 8.28 0.00 43.74 3.41
93 94 9.919348 GAGATAGTAGTAGAAGTTTCGTAACTG 57.081 37.037 8.28 0.00 43.74 3.16
94 95 9.889128 AGAGATAGTAGTAGAAGTTTCGTAACT 57.111 33.333 1.05 1.05 46.44 2.24
98 99 9.452287 AAAGAGAGATAGTAGTAGAAGTTTCGT 57.548 33.333 0.00 0.00 0.00 3.85
99 100 9.710979 CAAAGAGAGATAGTAGTAGAAGTTTCG 57.289 37.037 0.00 0.00 0.00 3.46
142 143 8.787852 GGAGTAGAATCTTCTTTCACATGTTTT 58.212 33.333 0.00 0.00 38.70 2.43
143 144 7.391833 GGGAGTAGAATCTTCTTTCACATGTTT 59.608 37.037 0.00 0.00 38.70 2.83
144 145 6.881602 GGGAGTAGAATCTTCTTTCACATGTT 59.118 38.462 0.00 0.00 38.70 2.71
145 146 6.013379 TGGGAGTAGAATCTTCTTTCACATGT 60.013 38.462 0.00 0.00 38.70 3.21
146 147 6.409704 TGGGAGTAGAATCTTCTTTCACATG 58.590 40.000 0.00 0.00 38.70 3.21
147 148 6.214412 ACTGGGAGTAGAATCTTCTTTCACAT 59.786 38.462 8.58 0.95 38.70 3.21
148 149 5.544176 ACTGGGAGTAGAATCTTCTTTCACA 59.456 40.000 0.00 3.91 38.70 3.58
149 150 6.043854 ACTGGGAGTAGAATCTTCTTTCAC 57.956 41.667 0.00 0.00 38.70 3.18
163 164 4.616553 TCCATGTAAAGCTACTGGGAGTA 58.383 43.478 0.00 0.00 31.96 2.59
164 165 3.450904 TCCATGTAAAGCTACTGGGAGT 58.549 45.455 0.00 0.00 31.96 3.85
165 166 3.706594 TCTCCATGTAAAGCTACTGGGAG 59.293 47.826 15.47 15.47 43.35 4.30
166 167 3.451178 GTCTCCATGTAAAGCTACTGGGA 59.549 47.826 0.00 0.00 31.96 4.37
167 168 3.197766 TGTCTCCATGTAAAGCTACTGGG 59.802 47.826 0.00 0.00 31.96 4.45
168 169 4.184629 GTGTCTCCATGTAAAGCTACTGG 58.815 47.826 0.00 0.00 32.15 4.00
169 170 4.627467 GTGTGTCTCCATGTAAAGCTACTG 59.373 45.833 0.00 0.00 0.00 2.74
170 171 4.283467 TGTGTGTCTCCATGTAAAGCTACT 59.717 41.667 0.00 0.00 0.00 2.57
171 172 4.566004 TGTGTGTCTCCATGTAAAGCTAC 58.434 43.478 0.00 0.00 0.00 3.58
172 173 4.322725 CCTGTGTGTCTCCATGTAAAGCTA 60.323 45.833 0.00 0.00 0.00 3.32
173 174 3.557898 CCTGTGTGTCTCCATGTAAAGCT 60.558 47.826 0.00 0.00 0.00 3.74
174 175 2.744202 CCTGTGTGTCTCCATGTAAAGC 59.256 50.000 0.00 0.00 0.00 3.51
175 176 2.744202 GCCTGTGTGTCTCCATGTAAAG 59.256 50.000 0.00 0.00 0.00 1.85
176 177 2.105649 TGCCTGTGTGTCTCCATGTAAA 59.894 45.455 0.00 0.00 0.00 2.01
177 178 1.696884 TGCCTGTGTGTCTCCATGTAA 59.303 47.619 0.00 0.00 0.00 2.41
178 179 1.001974 GTGCCTGTGTGTCTCCATGTA 59.998 52.381 0.00 0.00 0.00 2.29
182 183 1.447217 CAGTGCCTGTGTGTCTCCA 59.553 57.895 0.00 0.00 0.00 3.86
191 192 2.109517 CTCCTCACAGCAGTGCCTGT 62.110 60.000 12.58 12.59 46.47 4.00
208 209 1.067495 CACCTCTCACGGAAGGAACTC 60.067 57.143 0.00 0.00 38.49 3.01
210 211 0.680061 ACACCTCTCACGGAAGGAAC 59.320 55.000 0.00 0.00 0.00 3.62
268 2373 3.403038 GCTGTGAGGTGAATAGTTGTGT 58.597 45.455 0.00 0.00 0.00 3.72
313 2418 3.056607 GGGCATGTGCTTTATGTCACTTT 60.057 43.478 4.84 0.00 41.70 2.66
344 2449 3.911698 TGTGTGCGTGCTCGTCCT 61.912 61.111 10.18 0.00 39.49 3.85
346 2451 2.959599 TGTGTGTGCGTGCTCGTC 60.960 61.111 10.18 3.07 39.49 4.20
347 2452 3.261951 GTGTGTGTGCGTGCTCGT 61.262 61.111 10.18 0.00 39.49 4.18
350 2460 1.748879 AAAGGTGTGTGTGCGTGCT 60.749 52.632 0.00 0.00 0.00 4.40
593 2722 3.323758 TAGCGATGTGTGTGGGGGC 62.324 63.158 0.00 0.00 0.00 5.80
595 2724 0.740868 CACTAGCGATGTGTGTGGGG 60.741 60.000 0.00 0.00 0.00 4.96
596 2725 0.740868 CCACTAGCGATGTGTGTGGG 60.741 60.000 0.00 0.00 43.01 4.61
597 2726 0.740868 CCCACTAGCGATGTGTGTGG 60.741 60.000 0.00 0.00 45.42 4.17
598 2727 1.361668 GCCCACTAGCGATGTGTGTG 61.362 60.000 7.61 0.00 33.92 3.82
606 2756 4.753662 ACCTCGGCCCACTAGCGA 62.754 66.667 0.00 0.00 0.00 4.93
685 2836 2.202676 GAGCTTCCACTCGGAGCG 60.203 66.667 4.58 0.00 44.10 5.03
714 2865 3.559242 AGTACTAGGCTTTACTACGAGCG 59.441 47.826 0.00 0.00 39.78 5.03
752 2917 7.094075 TGCCGTTTCTTCAGATAAGTAAGAGTA 60.094 37.037 0.00 0.00 31.30 2.59
753 2918 6.100668 GCCGTTTCTTCAGATAAGTAAGAGT 58.899 40.000 0.00 0.00 31.30 3.24
754 2919 6.100004 TGCCGTTTCTTCAGATAAGTAAGAG 58.900 40.000 0.00 0.00 31.30 2.85
755 2920 6.032956 TGCCGTTTCTTCAGATAAGTAAGA 57.967 37.500 0.00 0.00 0.00 2.10
756 2921 6.721571 TTGCCGTTTCTTCAGATAAGTAAG 57.278 37.500 0.00 0.00 0.00 2.34
757 2922 6.093495 CCATTGCCGTTTCTTCAGATAAGTAA 59.907 38.462 0.00 0.00 0.00 2.24
766 2931 0.886938 TCGCCATTGCCGTTTCTTCA 60.887 50.000 0.00 0.00 0.00 3.02
848 5494 2.238144 TCGCAGTACCCTGTACTCTACT 59.762 50.000 3.99 0.00 41.02 2.57
849 5495 2.636830 TCGCAGTACCCTGTACTCTAC 58.363 52.381 3.99 0.00 41.02 2.59
850 5496 3.211865 CATCGCAGTACCCTGTACTCTA 58.788 50.000 3.99 0.00 41.02 2.43
851 5497 2.025155 CATCGCAGTACCCTGTACTCT 58.975 52.381 3.99 0.00 41.02 3.24
860 5509 2.962253 GCTCGCCATCGCAGTACC 60.962 66.667 0.00 0.00 35.26 3.34
985 5634 4.228097 CATTTCGCGGCGGCTGAG 62.228 66.667 23.46 10.01 36.88 3.35
1009 5658 4.516195 GGAAGACGGCGAGGAGGC 62.516 72.222 16.62 0.00 42.76 4.70
1208 5857 3.371063 GCCCCGACGTGAGAGTGA 61.371 66.667 0.00 0.00 0.00 3.41
1734 6383 3.145551 TCGAACCCTAGCCGCTCC 61.146 66.667 0.00 0.00 0.00 4.70
1956 6605 3.436359 CAGCAAAATACCAAACCAATGCC 59.564 43.478 0.00 0.00 33.19 4.40
1992 6644 0.832135 TCCTTCTTGTCCGCCTCTGT 60.832 55.000 0.00 0.00 0.00 3.41
2021 6679 1.080435 GTCGGTCGACGGAATTTCCC 61.080 60.000 25.13 9.89 44.45 3.97
2033 6691 1.196808 CAAAATTCAGGTGGTCGGTCG 59.803 52.381 0.00 0.00 0.00 4.79
2037 6695 0.887933 CCCCAAAATTCAGGTGGTCG 59.112 55.000 0.00 0.00 0.00 4.79
2100 6770 0.859232 CAAACGTCAACCTCGGTGAG 59.141 55.000 0.00 0.00 0.00 3.51
2105 6775 3.432252 AGATTAAGCAAACGTCAACCTCG 59.568 43.478 0.00 0.00 0.00 4.63
2138 6808 2.034687 ATGCAGGCCACAGACCAC 59.965 61.111 5.01 0.00 0.00 4.16
2139 6809 2.226315 AGATGCAGGCCACAGACCA 61.226 57.895 5.01 0.00 0.00 4.02
2145 6815 1.755179 ACAATACAGATGCAGGCCAC 58.245 50.000 5.01 0.00 0.00 5.01
2191 6986 5.876357 AGTCACTGTAATTCCCTGCTTAAA 58.124 37.500 0.00 0.00 0.00 1.52
2287 7083 5.400485 GCTATTTGACACAGTCTTTGCTTTG 59.600 40.000 0.00 0.00 33.15 2.77
2357 7153 2.174854 AGAAAGCCAACCAACCTGTACT 59.825 45.455 0.00 0.00 0.00 2.73
2359 7155 2.173782 TCAGAAAGCCAACCAACCTGTA 59.826 45.455 0.00 0.00 0.00 2.74
2392 7193 0.612732 TCCCTTCACCGTGTATCCGT 60.613 55.000 0.00 0.00 0.00 4.69
2479 7287 1.915141 AATGTGGGCAGACAAGGAAG 58.085 50.000 0.00 0.00 0.00 3.46
2547 7381 5.853936 AGAAAGGGAAGCAAAAATTACCAC 58.146 37.500 0.00 0.00 32.52 4.16
2671 7505 5.240623 AGCACCGAAATGTTCTGTTATTTCA 59.759 36.000 0.00 0.00 41.22 2.69
2828 7675 4.044426 GAGATGCAACAACACAAAACTCC 58.956 43.478 0.00 0.00 0.00 3.85
3196 8051 7.408123 CAAGCATCTTATCATCTTCTGTTGAC 58.592 38.462 0.00 0.00 0.00 3.18
3211 8066 7.495901 TCATGTTTTTCAAACCAAGCATCTTA 58.504 30.769 0.00 0.00 0.00 2.10
3224 8079 7.731882 TGGTTACGTAGATCATGTTTTTCAA 57.268 32.000 0.00 0.00 0.00 2.69
3321 8178 4.672801 GCATGCCTTAACTCTAAAGTGCAC 60.673 45.833 9.40 9.40 34.90 4.57
3577 8729 6.421801 GCCACATAATCAGACCATTATTTTGC 59.578 38.462 0.00 0.00 28.11 3.68
3587 8752 2.684881 CCAACAGCCACATAATCAGACC 59.315 50.000 0.00 0.00 0.00 3.85
3590 8755 4.333649 CACTACCAACAGCCACATAATCAG 59.666 45.833 0.00 0.00 0.00 2.90
3780 8945 7.307455 GCAGCCTAAAACTAGATAGCACATAAC 60.307 40.741 0.00 0.00 0.00 1.89
4003 9168 1.080772 CATGCCTTGCACAGCACAG 60.081 57.895 11.80 4.79 43.04 3.66
4140 9305 6.003950 ACCATGTGTAAGAAATTGCTACTGT 58.996 36.000 0.00 0.00 0.00 3.55
4205 9370 9.392259 GGTTAAGCTAACTAGTTTCAACCATAT 57.608 33.333 14.49 0.00 38.68 1.78
4244 9409 6.143919 TGACGCTGATGTCGTAATGATATTTC 59.856 38.462 0.00 0.00 41.87 2.17
4271 9436 6.094048 ACTCATTCCAATTCTTTCATACCACG 59.906 38.462 0.00 0.00 0.00 4.94
4280 9445 9.917887 AATCTCATCTACTCATTCCAATTCTTT 57.082 29.630 0.00 0.00 0.00 2.52
4507 9672 3.732721 GCTGTTGTGAAACTCTCATTTGC 59.267 43.478 0.00 0.00 38.04 3.68
4509 9674 3.876914 TCGCTGTTGTGAAACTCTCATTT 59.123 39.130 0.00 0.00 38.04 2.32
4521 9687 1.995484 CCTCTATGTGTCGCTGTTGTG 59.005 52.381 0.00 0.00 0.00 3.33
4531 9697 2.367567 ACAAACCGTGACCTCTATGTGT 59.632 45.455 0.00 0.00 0.00 3.72
4658 9824 2.188817 GGAACACTATGTCTGTCCCCT 58.811 52.381 0.00 0.00 0.00 4.79
4680 9879 8.367911 TGATCTATAAAGACCTCATACGCATTT 58.632 33.333 0.00 0.00 33.57 2.32
4816 10015 1.079612 GGGAAGTGGCTGCATTTGC 60.080 57.895 0.50 0.00 42.50 3.68
4818 10017 0.827507 AACGGGAAGTGGCTGCATTT 60.828 50.000 0.50 0.00 0.00 2.32
4860 10059 2.802787 AAGATCGGAGTATTGCTCGG 57.197 50.000 3.41 3.41 45.03 4.63
4861 10060 4.861210 AGTAAAGATCGGAGTATTGCTCG 58.139 43.478 0.00 0.00 45.03 5.03
4869 10068 7.125356 ACCACCTATTTTAGTAAAGATCGGAGT 59.875 37.037 11.70 7.98 0.00 3.85
4938 10137 4.742438 TCTTTGAATTGCTACCGTGTTC 57.258 40.909 0.00 0.00 0.00 3.18
4992 10191 6.182627 TGCTGTGAAGATAATCTGTGGATTT 58.817 36.000 0.00 0.00 41.75 2.17
5009 10208 4.283467 AGACCATGTAGTAAACTGCTGTGA 59.717 41.667 0.00 0.00 0.00 3.58
5010 10209 4.569943 AGACCATGTAGTAAACTGCTGTG 58.430 43.478 0.00 0.00 0.00 3.66
5217 10416 3.435671 AGGAAACCTTTCTGAATTACGCG 59.564 43.478 3.53 3.53 37.35 6.01
5233 10433 2.162408 CGAGGCAAAATGAGGAGGAAAC 59.838 50.000 0.00 0.00 0.00 2.78
5236 10436 1.208052 CTCGAGGCAAAATGAGGAGGA 59.792 52.381 3.91 0.00 0.00 3.71
5239 10439 1.406069 GCTCTCGAGGCAAAATGAGGA 60.406 52.381 13.56 0.00 0.00 3.71
5254 10454 1.596727 CATTAGCAAAGAGGCGCTCTC 59.403 52.381 7.64 12.63 40.28 3.20
5286 10486 9.693739 TCAATACAATTATTCTGTGTGGGTATT 57.306 29.630 0.00 0.00 31.25 1.89
5320 10520 5.875359 AGAATACAAGCAAGGTACTAACTGC 59.125 40.000 0.00 0.00 38.49 4.40
5675 10877 5.103687 AGGAATCCATATTGGGCTATCTGA 58.896 41.667 0.61 0.00 38.32 3.27
5848 11179 8.426881 AAAAGATAGAGCGAGGAAGTAAATTC 57.573 34.615 0.00 0.00 37.17 2.17
5920 11264 7.839705 TCCAGGAAATTCTGTATCAGTAGTACT 59.160 37.037 0.00 0.00 33.14 2.73
6033 11377 7.548427 AGGCACTCATATCATTTTGATAGATCG 59.452 37.037 3.83 0.00 42.04 3.69
6167 11511 6.156519 TGACTACTATTATACATGCTTGCGG 58.843 40.000 0.00 0.00 0.00 5.69
6181 11525 8.554490 AATAAGTGGGTCTGATGACTACTATT 57.446 34.615 0.00 0.00 42.54 1.73
6343 11792 8.192743 TGCCCAACAATAATGAATATGCTTAT 57.807 30.769 0.00 0.00 0.00 1.73
6371 11820 7.180322 AGCATCTTATGAAGACAGAGAAAGA 57.820 36.000 0.00 0.00 41.01 2.52
6391 11840 4.836825 AGAAGCACTAATGTGTGTAGCAT 58.163 39.130 0.00 0.00 45.44 3.79
6396 11845 4.357918 AGGAAGAAGCACTAATGTGTGT 57.642 40.909 0.00 0.00 45.44 3.72
6512 11964 6.494893 TGGCTTATTATGTGTTTGACAGAC 57.505 37.500 0.00 0.00 38.23 3.51
6526 11978 7.547722 CCATAGTAATACACGCATGGCTTATTA 59.452 37.037 0.00 0.00 37.62 0.98
6574 12029 9.877178 AATTCCAAGTGTACATTAAAACAAACA 57.123 25.926 0.00 0.00 0.00 2.83
6628 12083 2.936919 TGTTCATCCTGTCAGCAAGT 57.063 45.000 0.00 0.00 0.00 3.16
6652 12107 6.710278 TCCATTTATGACACTGACTGATTGA 58.290 36.000 0.00 0.00 0.00 2.57
6694 12149 2.735663 CTGAACTTCTGTAGCTGCACTG 59.264 50.000 0.00 2.87 0.00 3.66
6703 12158 3.239449 TGCCTCCTTCTGAACTTCTGTA 58.761 45.455 0.00 0.00 0.00 2.74
6730 12185 7.829211 ACAATAAAGTGTGTATAGCCTCAACAT 59.171 33.333 0.00 0.00 0.00 2.71
6787 12242 6.243811 AGAAACACAAGTACACGAACAAAA 57.756 33.333 0.00 0.00 0.00 2.44
6789 12244 5.866335 AAGAAACACAAGTACACGAACAA 57.134 34.783 0.00 0.00 0.00 2.83
6810 12265 5.453648 CCGACAATGTCCAAACGAAAATAA 58.546 37.500 7.91 0.00 0.00 1.40
6831 12286 0.947244 GTGCATATTCTTGGAGCCCG 59.053 55.000 0.00 0.00 0.00 6.13
6919 14819 0.947244 ACTCTGGCAAAGCTTCAACG 59.053 50.000 0.00 0.00 0.00 4.10
6925 14825 1.277557 CTGGACTACTCTGGCAAAGCT 59.722 52.381 0.00 0.00 0.00 3.74
6963 14865 2.684001 TTAACCGTGGCCTGATAGTG 57.316 50.000 3.32 0.00 0.00 2.74
6976 14878 4.241681 CACCCAAACCATTTCATTAACCG 58.758 43.478 0.00 0.00 0.00 4.44
6980 14882 6.485830 TTTCACACCCAAACCATTTCATTA 57.514 33.333 0.00 0.00 0.00 1.90
7007 14909 4.911514 AAAATCAACAGCGTAAACCACT 57.088 36.364 0.00 0.00 0.00 4.00
7014 14916 6.561737 TTGATACCAAAAATCAACAGCGTA 57.438 33.333 0.00 0.00 38.19 4.42
7115 15017 1.010580 GGAAGCTTCTTTCGGCTAGC 58.989 55.000 25.05 6.04 37.87 3.42
7247 15149 1.271108 TGTTGGAAAGGCGTGCTCATA 60.271 47.619 0.00 0.00 0.00 2.15
7277 15180 5.745294 GGCGAGTACATCTACGAATAAACAA 59.255 40.000 0.00 0.00 0.00 2.83
7282 15185 3.251729 GGTGGCGAGTACATCTACGAATA 59.748 47.826 0.00 0.00 0.00 1.75
7365 15268 1.228894 TCTCGTGCTCTGGTTCCCT 60.229 57.895 0.00 0.00 0.00 4.20
7569 15472 2.044946 GGGGGAAACTGCGCTGAT 60.045 61.111 21.92 6.21 0.00 2.90
7594 15679 3.409201 CCGGATGGCTCATGTGAAT 57.591 52.632 0.00 0.00 0.00 2.57
7595 15680 4.961637 CCGGATGGCTCATGTGAA 57.038 55.556 0.00 0.00 0.00 3.18
7632 15726 1.022451 TAGCGGCGTTTTGATGGACC 61.022 55.000 9.37 0.00 0.00 4.46
7659 15762 1.610363 TTGCAGGAATACGGTTTGCA 58.390 45.000 0.00 0.00 42.44 4.08
7660 15763 2.324860 GTTTGCAGGAATACGGTTTGC 58.675 47.619 0.00 0.00 35.42 3.68
7661 15764 2.667171 CGGTTTGCAGGAATACGGTTTG 60.667 50.000 0.00 0.00 0.00 2.93
7662 15765 1.538075 CGGTTTGCAGGAATACGGTTT 59.462 47.619 0.00 0.00 0.00 3.27
7664 15767 1.303091 GCGGTTTGCAGGAATACGGT 61.303 55.000 0.00 0.00 45.45 4.83
7665 15768 1.427819 GCGGTTTGCAGGAATACGG 59.572 57.895 0.00 0.00 45.45 4.02
7696 15867 1.208535 TCCGAACACACACAAACCTCT 59.791 47.619 0.00 0.00 0.00 3.69
7732 15903 4.678743 GGTTGGGCCCAGGGTGTC 62.679 72.222 26.87 11.96 0.00 3.67
7734 15905 4.684134 CTGGTTGGGCCCAGGGTG 62.684 72.222 26.87 13.32 46.89 4.61
7742 16079 1.040339 TGTGGTGTTTCTGGTTGGGC 61.040 55.000 0.00 0.00 0.00 5.36
7751 16088 2.583143 AGTAGGGCTTTGTGGTGTTTC 58.417 47.619 0.00 0.00 0.00 2.78
7770 16107 0.321653 CGAGGGTGGAGGGACAAAAG 60.322 60.000 0.00 0.00 0.00 2.27
7793 16132 2.620585 TCGGTCTCAGACTATGCAGATG 59.379 50.000 4.40 0.00 32.47 2.90
7821 16160 2.270257 CGGAGTGGGTGGTACGACA 61.270 63.158 10.36 0.00 0.00 4.35
7824 16163 2.570181 GTCGGAGTGGGTGGTACG 59.430 66.667 0.00 0.00 0.00 3.67
7831 16190 1.105167 TGGTATAGCGTCGGAGTGGG 61.105 60.000 0.00 0.00 0.00 4.61
7832 16191 0.030369 GTGGTATAGCGTCGGAGTGG 59.970 60.000 0.00 0.00 0.00 4.00
7833 16192 0.030369 GGTGGTATAGCGTCGGAGTG 59.970 60.000 0.00 0.00 0.00 3.51
7834 16193 1.105759 GGGTGGTATAGCGTCGGAGT 61.106 60.000 0.00 0.00 0.00 3.85
7835 16194 1.105167 TGGGTGGTATAGCGTCGGAG 61.105 60.000 0.00 0.00 0.00 4.63
7836 16195 1.076850 TGGGTGGTATAGCGTCGGA 60.077 57.895 0.00 0.00 0.00 4.55
7837 16196 1.066918 GTGGGTGGTATAGCGTCGG 59.933 63.158 0.00 0.00 0.00 4.79
7838 16197 0.458669 AAGTGGGTGGTATAGCGTCG 59.541 55.000 0.00 0.00 0.00 5.12
7839 16198 2.277084 CAAAGTGGGTGGTATAGCGTC 58.723 52.381 0.00 0.00 0.00 5.19
7840 16199 1.677820 GCAAAGTGGGTGGTATAGCGT 60.678 52.381 0.00 0.00 0.00 5.07
7841 16200 1.014352 GCAAAGTGGGTGGTATAGCG 58.986 55.000 0.00 0.00 0.00 4.26
7842 16201 2.017049 CAGCAAAGTGGGTGGTATAGC 58.983 52.381 0.00 0.00 32.80 2.97
7843 16202 2.017049 GCAGCAAAGTGGGTGGTATAG 58.983 52.381 0.00 0.00 36.80 1.31
7844 16203 1.352687 TGCAGCAAAGTGGGTGGTATA 59.647 47.619 0.00 0.00 36.80 1.47
7845 16204 0.112218 TGCAGCAAAGTGGGTGGTAT 59.888 50.000 0.00 0.00 36.80 2.73
7846 16205 0.821711 GTGCAGCAAAGTGGGTGGTA 60.822 55.000 0.00 0.00 36.80 3.25
7847 16206 2.127232 GTGCAGCAAAGTGGGTGGT 61.127 57.895 0.00 0.00 36.80 4.16
7848 16207 2.079020 CTGTGCAGCAAAGTGGGTGG 62.079 60.000 4.13 0.00 36.80 4.61
7849 16208 1.361271 CTGTGCAGCAAAGTGGGTG 59.639 57.895 4.13 0.00 39.22 4.61
7850 16209 1.829533 CCTGTGCAGCAAAGTGGGT 60.830 57.895 11.89 0.00 0.00 4.51
7857 16216 3.608662 GCAAGGCCTGTGCAGCAA 61.609 61.111 25.63 0.00 41.80 3.91
7894 16275 3.248024 TCTAACCTTGTGTCAGACCCAT 58.752 45.455 0.00 0.00 0.00 4.00
7920 16301 2.668212 TTGTCGCCCTTTCGCAGG 60.668 61.111 0.00 0.00 43.49 4.85
7921 16302 2.863153 CTTGTCGCCCTTTCGCAG 59.137 61.111 0.00 0.00 0.00 5.18
7922 16303 3.353836 GCTTGTCGCCCTTTCGCA 61.354 61.111 0.00 0.00 0.00 5.10
7923 16304 3.028366 GAGCTTGTCGCCCTTTCGC 62.028 63.158 0.00 0.00 40.39 4.70
7932 16350 2.720758 CGCAAGTCGGAGCTTGTCG 61.721 63.158 16.27 15.54 45.47 4.35
7950 16368 1.250840 CCAGGGTTGCAAGTAAGGCC 61.251 60.000 0.00 0.00 0.00 5.19
7951 16369 0.539669 ACCAGGGTTGCAAGTAAGGC 60.540 55.000 0.00 0.00 0.00 4.35
7952 16370 1.073923 AGACCAGGGTTGCAAGTAAGG 59.926 52.381 0.00 2.63 0.00 2.69
7954 16372 2.582052 CAAGACCAGGGTTGCAAGTAA 58.418 47.619 0.00 0.00 0.00 2.24
7955 16373 1.817740 GCAAGACCAGGGTTGCAAGTA 60.818 52.381 19.44 0.00 46.83 2.24
7956 16374 1.109323 GCAAGACCAGGGTTGCAAGT 61.109 55.000 19.44 0.00 46.83 3.16
7957 16375 1.662044 GCAAGACCAGGGTTGCAAG 59.338 57.895 19.44 0.00 46.83 4.01
7958 16376 3.854856 GCAAGACCAGGGTTGCAA 58.145 55.556 19.44 0.00 46.83 4.08
7960 16378 2.741486 TACGGCAAGACCAGGGTTGC 62.741 60.000 17.08 17.08 46.88 4.17
7966 16897 1.148310 CTGTGTTACGGCAAGACCAG 58.852 55.000 0.00 0.00 39.03 4.00
7972 16903 3.610637 GGTACCTGTGTTACGGCAA 57.389 52.632 4.06 0.00 0.00 4.52
7990 16921 4.431131 AATGTGCAGGGGCGGAGG 62.431 66.667 0.00 0.00 45.35 4.30
7996 16927 1.978617 GGACCACAATGTGCAGGGG 60.979 63.158 8.05 0.00 31.34 4.79
8091 17023 6.878389 ACAACCAAATTCATTGTGTTCACTTT 59.122 30.769 4.59 0.00 37.32 2.66
8113 17045 3.427098 CGCGACATAGAAGTACTCCACAA 60.427 47.826 0.00 0.00 0.00 3.33
8117 17049 3.181503 TGAACGCGACATAGAAGTACTCC 60.182 47.826 15.93 0.00 0.00 3.85
8127 17059 3.123050 CTGAATCCATGAACGCGACATA 58.877 45.455 15.93 4.59 0.00 2.29
8155 17087 3.012518 GTCACCATTTCACCCTCATCTG 58.987 50.000 0.00 0.00 0.00 2.90
8164 17096 2.789208 CATGCATCGTCACCATTTCAC 58.211 47.619 0.00 0.00 0.00 3.18
8176 17108 0.943673 TCCAATAACCGCATGCATCG 59.056 50.000 19.57 6.69 0.00 3.84
8206 17138 3.816842 GCCCCTTGATTGATCCTATGCAT 60.817 47.826 3.79 3.79 0.00 3.96
8269 17223 2.232941 GGACAAAGTAGTCGTCCATCCA 59.767 50.000 12.26 0.00 46.98 3.41
8270 17224 2.889852 GGACAAAGTAGTCGTCCATCC 58.110 52.381 12.26 0.00 46.98 3.51
8310 17264 0.730840 GGAATCGACGGCGGAAAAAT 59.269 50.000 12.58 0.00 38.28 1.82
8317 17271 0.936764 CTCATCTGGAATCGACGGCG 60.937 60.000 2.87 2.87 39.35 6.46
8348 17302 2.158900 AGACCATTGTAGAGGCGATTGG 60.159 50.000 0.00 0.00 0.00 3.16
8349 17303 3.126831 GAGACCATTGTAGAGGCGATTG 58.873 50.000 0.00 0.00 0.00 2.67
8350 17304 2.103263 GGAGACCATTGTAGAGGCGATT 59.897 50.000 0.00 0.00 0.00 3.34
8406 17360 0.894141 CCTCCTCCATATCTCGGCTG 59.106 60.000 0.00 0.00 0.00 4.85
8412 17366 1.077828 TCGGATGCCTCCTCCATATCT 59.922 52.381 6.46 0.00 39.65 1.98
8413 17367 1.561643 TCGGATGCCTCCTCCATATC 58.438 55.000 6.46 0.00 39.65 1.63
8414 17368 1.836166 CATCGGATGCCTCCTCCATAT 59.164 52.381 4.84 0.00 39.65 1.78
8415 17369 1.203174 TCATCGGATGCCTCCTCCATA 60.203 52.381 13.15 0.00 39.65 2.74
8420 17374 1.455773 TCGTCATCGGATGCCTCCT 60.456 57.895 13.15 0.00 39.65 3.69
8421 17375 1.006805 CTCGTCATCGGATGCCTCC 60.007 63.158 13.15 0.00 38.29 4.30
8422 17376 1.663074 GCTCGTCATCGGATGCCTC 60.663 63.158 13.15 5.55 37.69 4.70
8423 17377 2.419198 GCTCGTCATCGGATGCCT 59.581 61.111 13.15 0.00 37.69 4.75
8424 17378 2.663188 GGCTCGTCATCGGATGCC 60.663 66.667 13.15 6.81 39.37 4.40
8425 17379 3.032609 CGGCTCGTCATCGGATGC 61.033 66.667 13.15 7.58 37.69 3.91
8426 17380 1.658717 GTCGGCTCGTCATCGGATG 60.659 63.158 11.79 11.79 37.69 3.51
8427 17381 2.722487 GTCGGCTCGTCATCGGAT 59.278 61.111 0.00 0.00 37.69 4.18
8428 17382 3.872728 CGTCGGCTCGTCATCGGA 61.873 66.667 0.00 0.00 37.69 4.55
8429 17383 4.175489 ACGTCGGCTCGTCATCGG 62.175 66.667 0.00 0.00 40.04 4.18
8474 17428 1.960040 ATGCTCTTCCGCCATGACGA 61.960 55.000 1.83 0.00 34.06 4.20
8493 17447 1.071642 TCCCACGTTTGCATTCGGA 59.928 52.632 13.85 0.00 0.00 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.