Multiple sequence alignment - TraesCS5D01G435500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G435500 chr5D 100.000 2936 0 0 1 2936 490500515 490503450 0.000000e+00 5422.0
1 TraesCS5D01G435500 chr5D 84.295 624 84 9 1000 1610 490494766 490495388 5.420000e-167 597.0
2 TraesCS5D01G435500 chr5D 85.161 310 38 5 1612 1920 490495441 490495743 7.900000e-81 311.0
3 TraesCS5D01G435500 chr5B 94.694 980 41 3 954 1933 604985225 604986193 0.000000e+00 1511.0
4 TraesCS5D01G435500 chr5B 94.261 575 30 3 1 574 604911851 604912423 0.000000e+00 876.0
5 TraesCS5D01G435500 chr5B 87.375 602 36 17 2152 2715 604994296 604994895 0.000000e+00 654.0
6 TraesCS5D01G435500 chr5B 83.628 623 90 5 1000 1610 604898128 604898750 2.540000e-160 575.0
7 TraesCS5D01G435500 chr5B 91.512 377 18 4 597 968 604918219 604918586 9.390000e-140 507.0
8 TraesCS5D01G435500 chr5B 87.225 227 9 3 2710 2936 604997361 604997567 1.050000e-59 241.0
9 TraesCS5D01G435500 chr5B 90.323 155 8 6 1914 2066 604986216 604986365 2.310000e-46 196.0
10 TraesCS5D01G435500 chr5B 89.000 100 9 2 2066 2164 604992106 604992204 3.970000e-24 122.0
11 TraesCS5D01G435500 chr5A 86.899 832 40 20 2152 2936 612167196 612168005 0.000000e+00 869.0
12 TraesCS5D01G435500 chr5A 82.825 623 95 7 1000 1610 612158172 612158794 5.530000e-152 547.0
13 TraesCS5D01G435500 chr5A 84.520 323 42 5 1612 1933 612158847 612159162 2.200000e-81 313.0
14 TraesCS5D01G435500 chr6D 80.032 621 109 12 1000 1610 420323442 420324057 2.080000e-121 446.0
15 TraesCS5D01G435500 chr6D 78.882 322 59 8 1218 1533 386279797 386279479 2.970000e-50 209.0
16 TraesCS5D01G435500 chr6D 77.338 278 51 10 26 297 447098787 447098516 1.410000e-33 154.0
17 TraesCS5D01G435500 chr6B 79.928 279 43 11 26 297 676304227 676303955 2.990000e-45 193.0
18 TraesCS5D01G435500 chr7B 82.192 219 30 6 697 908 232192 232408 2.320000e-41 180.0
19 TraesCS5D01G435500 chr6A 81.735 219 29 9 66 276 593834808 593834593 3.890000e-39 172.0
20 TraesCS5D01G435500 chr3D 80.081 246 33 11 681 917 523338523 523338285 5.030000e-38 169.0
21 TraesCS5D01G435500 chr3D 81.319 182 30 3 738 917 598246099 598246278 8.480000e-31 145.0
22 TraesCS5D01G435500 chr1D 82.609 184 26 6 738 917 365537462 365537643 1.090000e-34 158.0
23 TraesCS5D01G435500 chr1A 81.281 203 31 5 697 895 101375764 101375565 1.090000e-34 158.0
24 TraesCS5D01G435500 chr1B 79.574 235 35 9 680 904 162809061 162808830 3.920000e-34 156.0
25 TraesCS5D01G435500 chr7D 78.099 242 44 8 683 917 623407532 623407293 8.480000e-31 145.0
26 TraesCS5D01G435500 chr7A 89.796 49 5 0 201 249 19165669 19165717 2.440000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G435500 chr5D 490500515 490503450 2935 False 5422.0 5422 100.000000 1 2936 1 chr5D.!!$F1 2935
1 TraesCS5D01G435500 chr5D 490494766 490495743 977 False 454.0 597 84.728000 1000 1920 2 chr5D.!!$F2 920
2 TraesCS5D01G435500 chr5B 604911851 604912423 572 False 876.0 876 94.261000 1 574 1 chr5B.!!$F2 573
3 TraesCS5D01G435500 chr5B 604985225 604986365 1140 False 853.5 1511 92.508500 954 2066 2 chr5B.!!$F4 1112
4 TraesCS5D01G435500 chr5B 604898128 604898750 622 False 575.0 575 83.628000 1000 1610 1 chr5B.!!$F1 610
5 TraesCS5D01G435500 chr5B 604992106 604997567 5461 False 339.0 654 87.866667 2066 2936 3 chr5B.!!$F5 870
6 TraesCS5D01G435500 chr5A 612167196 612168005 809 False 869.0 869 86.899000 2152 2936 1 chr5A.!!$F1 784
7 TraesCS5D01G435500 chr5A 612158172 612159162 990 False 430.0 547 83.672500 1000 1933 2 chr5A.!!$F2 933
8 TraesCS5D01G435500 chr6D 420323442 420324057 615 False 446.0 446 80.032000 1000 1610 1 chr6D.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 400 0.032515 TGATCCTCCTCGGCCAAGTA 60.033 55.0 2.24 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2226 0.680061 ACACCTCTCACGGAAGGAAC 59.32 55.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 7.092891 ACCCTCAAATATTTTCCTCCAATTTCC 60.093 37.037 0.00 0.00 0.00 3.13
90 92 3.512329 TGTGTGAAGCTAACCGAATCCTA 59.488 43.478 0.00 0.00 0.00 2.94
181 183 4.875536 TGTGACCACATAGTGCATAATCAC 59.124 41.667 0.00 0.00 36.21 3.06
263 265 9.162764 CATAGAGGTAAACTAAAGCTAAAGCAA 57.837 33.333 4.54 0.00 45.16 3.91
293 295 3.246880 AGTCGGGGGCGAGGTTTT 61.247 61.111 0.00 0.00 0.00 2.43
294 296 1.891722 GAGTCGGGGGCGAGGTTTTA 61.892 60.000 0.00 0.00 0.00 1.52
295 297 1.222661 GTCGGGGGCGAGGTTTTAT 59.777 57.895 0.00 0.00 0.00 1.40
307 309 0.686441 GGTTTTATGGGTCCCCTGCC 60.686 60.000 5.13 0.00 36.94 4.85
336 338 2.125512 GCATCGACGGGCTCACTT 60.126 61.111 0.00 0.00 0.00 3.16
345 347 1.284982 CGGGCTCACTTGAGTTGTCG 61.285 60.000 8.04 3.89 43.85 4.35
352 354 0.179094 ACTTGAGTTGTCGTTGGCGA 60.179 50.000 0.00 0.00 45.79 5.54
360 362 2.664851 TCGTTGGCGAGCTGGTTG 60.665 61.111 0.00 0.00 42.81 3.77
361 363 2.664851 CGTTGGCGAGCTGGTTGA 60.665 61.111 0.00 0.00 41.33 3.18
362 364 2.250939 CGTTGGCGAGCTGGTTGAA 61.251 57.895 0.00 0.00 41.33 2.69
363 365 1.577328 CGTTGGCGAGCTGGTTGAAT 61.577 55.000 0.00 0.00 41.33 2.57
364 366 1.448985 GTTGGCGAGCTGGTTGAATA 58.551 50.000 0.00 0.00 0.00 1.75
365 367 1.810151 GTTGGCGAGCTGGTTGAATAA 59.190 47.619 0.00 0.00 0.00 1.40
366 368 2.418368 TGGCGAGCTGGTTGAATAAT 57.582 45.000 0.00 0.00 0.00 1.28
367 369 2.016318 TGGCGAGCTGGTTGAATAATG 58.984 47.619 0.00 0.00 0.00 1.90
368 370 1.268743 GGCGAGCTGGTTGAATAATGC 60.269 52.381 0.00 0.00 0.00 3.56
369 371 1.401552 GCGAGCTGGTTGAATAATGCA 59.598 47.619 0.00 0.00 0.00 3.96
370 372 2.033801 GCGAGCTGGTTGAATAATGCAT 59.966 45.455 0.00 0.00 0.00 3.96
371 373 3.851105 GCGAGCTGGTTGAATAATGCATC 60.851 47.826 0.00 0.00 0.00 3.91
372 374 3.313249 CGAGCTGGTTGAATAATGCATCA 59.687 43.478 0.00 0.00 0.00 3.07
373 375 4.604976 GAGCTGGTTGAATAATGCATCAC 58.395 43.478 0.00 0.00 0.00 3.06
374 376 4.018490 AGCTGGTTGAATAATGCATCACA 58.982 39.130 0.00 0.00 0.00 3.58
375 377 4.107622 GCTGGTTGAATAATGCATCACAC 58.892 43.478 0.00 0.00 0.00 3.82
376 378 4.142315 GCTGGTTGAATAATGCATCACACT 60.142 41.667 0.00 0.00 0.00 3.55
377 379 5.565592 TGGTTGAATAATGCATCACACTC 57.434 39.130 0.00 0.00 0.00 3.51
378 380 4.094739 TGGTTGAATAATGCATCACACTCG 59.905 41.667 0.00 0.00 0.00 4.18
379 381 4.094887 GGTTGAATAATGCATCACACTCGT 59.905 41.667 0.00 0.00 0.00 4.18
380 382 4.863152 TGAATAATGCATCACACTCGTG 57.137 40.909 0.00 0.00 45.08 4.35
390 392 0.099613 CACACTCGTGATCCTCCTCG 59.900 60.000 3.74 0.00 46.80 4.63
391 393 1.032657 ACACTCGTGATCCTCCTCGG 61.033 60.000 3.74 0.00 0.00 4.63
392 394 2.122167 ACTCGTGATCCTCCTCGGC 61.122 63.158 0.00 0.00 0.00 5.54
393 395 2.833582 TCGTGATCCTCCTCGGCC 60.834 66.667 0.00 0.00 0.00 6.13
394 396 3.147595 CGTGATCCTCCTCGGCCA 61.148 66.667 2.24 0.00 0.00 5.36
395 397 2.721167 CGTGATCCTCCTCGGCCAA 61.721 63.158 2.24 0.00 0.00 4.52
396 398 1.144936 GTGATCCTCCTCGGCCAAG 59.855 63.158 2.24 0.00 0.00 3.61
397 399 1.306141 TGATCCTCCTCGGCCAAGT 60.306 57.895 2.24 0.00 0.00 3.16
398 400 0.032515 TGATCCTCCTCGGCCAAGTA 60.033 55.000 2.24 0.00 0.00 2.24
399 401 0.389757 GATCCTCCTCGGCCAAGTAC 59.610 60.000 2.24 0.00 0.00 2.73
400 402 1.049289 ATCCTCCTCGGCCAAGTACC 61.049 60.000 2.24 0.00 0.00 3.34
408 410 3.428282 GCCAAGTACCGGCGGTTG 61.428 66.667 38.73 28.07 40.35 3.77
409 411 2.744709 CCAAGTACCGGCGGTTGG 60.745 66.667 38.73 32.67 37.09 3.77
410 412 2.031465 CAAGTACCGGCGGTTGGT 59.969 61.111 38.73 19.16 43.62 3.67
411 413 2.030958 CAAGTACCGGCGGTTGGTC 61.031 63.158 38.73 23.18 40.96 4.02
412 414 3.244281 AAGTACCGGCGGTTGGTCC 62.244 63.158 38.73 19.04 40.96 4.46
413 415 3.698820 GTACCGGCGGTTGGTCCT 61.699 66.667 38.73 13.11 40.96 3.85
414 416 3.384532 TACCGGCGGTTGGTCCTC 61.385 66.667 38.73 0.00 40.96 3.71
419 421 4.699522 GCGGTTGGTCCTCGCCTT 62.700 66.667 11.82 0.00 43.17 4.35
420 422 2.742372 CGGTTGGTCCTCGCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
421 423 3.056328 GGTTGGTCCTCGCCTTGC 61.056 66.667 0.00 0.00 0.00 4.01
422 424 2.032681 GTTGGTCCTCGCCTTGCT 59.967 61.111 0.00 0.00 0.00 3.91
423 425 2.035442 GTTGGTCCTCGCCTTGCTC 61.035 63.158 0.00 0.00 0.00 4.26
424 426 2.217038 TTGGTCCTCGCCTTGCTCT 61.217 57.895 0.00 0.00 0.00 4.09
425 427 2.172483 TTGGTCCTCGCCTTGCTCTC 62.172 60.000 0.00 0.00 0.00 3.20
426 428 2.202676 GTCCTCGCCTTGCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
427 429 2.676822 TCCTCGCCTTGCTCTCGT 60.677 61.111 0.00 0.00 0.00 4.18
428 430 2.202676 CCTCGCCTTGCTCTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
429 431 2.578178 CTCGCCTTGCTCTCGTCG 60.578 66.667 0.00 0.00 0.00 5.12
430 432 4.116328 TCGCCTTGCTCTCGTCGG 62.116 66.667 0.00 0.00 0.00 4.79
433 435 4.116328 CCTTGCTCTCGTCGGCGA 62.116 66.667 13.29 13.29 45.79 5.54
434 436 2.103143 CTTGCTCTCGTCGGCGAT 59.897 61.111 14.65 0.00 46.80 4.58
435 437 2.202610 TTGCTCTCGTCGGCGATG 60.203 61.111 22.59 22.59 46.80 3.84
436 438 2.598619 CTTGCTCTCGTCGGCGATGA 62.599 60.000 28.10 28.10 46.80 2.92
437 439 2.102357 GCTCTCGTCGGCGATGAA 59.898 61.111 29.32 19.43 46.80 2.57
438 440 1.299468 GCTCTCGTCGGCGATGAAT 60.299 57.895 29.32 0.00 46.80 2.57
439 441 0.872021 GCTCTCGTCGGCGATGAATT 60.872 55.000 29.32 0.00 46.80 2.17
440 442 0.848942 CTCTCGTCGGCGATGAATTG 59.151 55.000 29.32 19.28 46.80 2.32
441 443 1.145759 TCTCGTCGGCGATGAATTGC 61.146 55.000 29.32 7.28 46.80 3.56
442 444 1.148157 CTCGTCGGCGATGAATTGCT 61.148 55.000 29.32 0.00 46.80 3.91
443 445 0.739462 TCGTCGGCGATGAATTGCTT 60.739 50.000 27.98 0.00 42.81 3.91
444 446 0.587242 CGTCGGCGATGAATTGCTTG 60.587 55.000 24.11 0.00 41.33 4.01
445 447 0.726827 GTCGGCGATGAATTGCTTGA 59.273 50.000 14.79 0.00 37.35 3.02
446 448 1.130373 GTCGGCGATGAATTGCTTGAA 59.870 47.619 14.79 0.00 37.35 2.69
447 449 1.809547 TCGGCGATGAATTGCTTGAAA 59.190 42.857 4.99 0.00 37.35 2.69
448 450 2.159531 TCGGCGATGAATTGCTTGAAAG 60.160 45.455 4.99 0.00 37.35 2.62
458 460 2.477845 CTTGAAAGCTCGCTGGCG 59.522 61.111 8.80 8.80 41.35 5.69
459 461 2.029288 CTTGAAAGCTCGCTGGCGA 61.029 57.895 16.68 16.68 46.87 5.54
482 484 4.101790 GCGACCGCCACCATGTTG 62.102 66.667 2.55 0.00 34.56 3.33
483 485 3.430862 CGACCGCCACCATGTTGG 61.431 66.667 4.61 4.61 45.02 3.77
489 491 2.985282 CCACCATGTTGGCACGCT 60.985 61.111 0.00 0.00 42.67 5.07
490 492 2.562912 CACCATGTTGGCACGCTC 59.437 61.111 0.00 0.00 42.67 5.03
491 493 2.672996 ACCATGTTGGCACGCTCC 60.673 61.111 0.00 0.00 42.67 4.70
492 494 2.672651 CCATGTTGGCACGCTCCA 60.673 61.111 0.00 0.00 0.00 3.86
493 495 2.048023 CCATGTTGGCACGCTCCAT 61.048 57.895 0.00 0.00 35.77 3.41
494 496 1.430632 CATGTTGGCACGCTCCATC 59.569 57.895 0.00 0.00 35.77 3.51
495 497 2.108514 ATGTTGGCACGCTCCATCG 61.109 57.895 0.00 0.00 35.77 3.84
496 498 4.166011 GTTGGCACGCTCCATCGC 62.166 66.667 0.00 0.00 35.77 4.58
505 507 4.530857 CTCCATCGCCCGGTGGTC 62.531 72.222 18.46 0.00 36.84 4.02
518 520 3.139029 GTGGTCCACCTCATCGAAC 57.861 57.895 11.30 0.00 36.82 3.95
519 521 0.736325 GTGGTCCACCTCATCGAACG 60.736 60.000 11.30 0.00 36.82 3.95
520 522 1.810030 GGTCCACCTCATCGAACGC 60.810 63.158 0.00 0.00 0.00 4.84
521 523 2.158959 GTCCACCTCATCGAACGCG 61.159 63.158 3.53 3.53 39.35 6.01
522 524 3.554692 CCACCTCATCGAACGCGC 61.555 66.667 5.73 0.00 37.46 6.86
523 525 3.902063 CACCTCATCGAACGCGCG 61.902 66.667 30.96 30.96 37.46 6.86
526 528 3.965701 CTCATCGAACGCGCGCTC 61.966 66.667 32.58 27.17 37.46 5.03
527 529 4.769598 TCATCGAACGCGCGCTCA 62.770 61.111 32.58 17.97 37.46 4.26
528 530 3.620428 CATCGAACGCGCGCTCAT 61.620 61.111 32.58 19.39 37.46 2.90
529 531 3.620428 ATCGAACGCGCGCTCATG 61.620 61.111 32.58 15.72 37.46 3.07
540 542 2.124570 GCTCATGGCGGATGTGGT 60.125 61.111 0.00 0.00 33.29 4.16
541 543 2.182842 GCTCATGGCGGATGTGGTC 61.183 63.158 0.00 0.00 33.29 4.02
542 544 1.221566 CTCATGGCGGATGTGGTCA 59.778 57.895 0.00 0.00 33.29 4.02
543 545 0.179037 CTCATGGCGGATGTGGTCAT 60.179 55.000 0.00 0.00 36.95 3.06
544 546 0.255604 TCATGGCGGATGTGGTCATT 59.744 50.000 0.00 0.00 34.06 2.57
545 547 1.488393 TCATGGCGGATGTGGTCATTA 59.512 47.619 0.00 0.00 34.06 1.90
546 548 1.875514 CATGGCGGATGTGGTCATTAG 59.124 52.381 0.00 0.00 34.06 1.73
547 549 0.463654 TGGCGGATGTGGTCATTAGC 60.464 55.000 0.00 0.00 36.64 3.09
548 550 1.498865 GGCGGATGTGGTCATTAGCG 61.499 60.000 0.00 0.00 37.50 4.26
549 551 0.810031 GCGGATGTGGTCATTAGCGT 60.810 55.000 0.00 0.00 34.06 5.07
550 552 1.651987 CGGATGTGGTCATTAGCGTT 58.348 50.000 0.00 0.00 34.06 4.84
551 553 1.593006 CGGATGTGGTCATTAGCGTTC 59.407 52.381 0.00 0.00 34.06 3.95
552 554 1.593006 GGATGTGGTCATTAGCGTTCG 59.407 52.381 0.00 0.00 34.06 3.95
553 555 2.536365 GATGTGGTCATTAGCGTTCGA 58.464 47.619 0.00 0.00 34.06 3.71
554 556 2.665649 TGTGGTCATTAGCGTTCGAT 57.334 45.000 0.00 0.00 0.00 3.59
555 557 2.967362 TGTGGTCATTAGCGTTCGATT 58.033 42.857 0.00 0.00 0.00 3.34
556 558 4.112716 TGTGGTCATTAGCGTTCGATTA 57.887 40.909 0.00 0.00 0.00 1.75
557 559 4.109766 TGTGGTCATTAGCGTTCGATTAG 58.890 43.478 0.00 0.00 0.00 1.73
558 560 4.142337 TGTGGTCATTAGCGTTCGATTAGA 60.142 41.667 0.00 0.00 0.00 2.10
559 561 4.206609 GTGGTCATTAGCGTTCGATTAGAC 59.793 45.833 0.00 0.00 0.00 2.59
560 562 4.142337 TGGTCATTAGCGTTCGATTAGACA 60.142 41.667 0.00 0.00 0.00 3.41
561 563 4.982916 GGTCATTAGCGTTCGATTAGACAT 59.017 41.667 0.00 0.00 0.00 3.06
562 564 5.107837 GGTCATTAGCGTTCGATTAGACATG 60.108 44.000 0.00 0.00 0.00 3.21
563 565 4.444388 TCATTAGCGTTCGATTAGACATGC 59.556 41.667 0.00 0.00 0.00 4.06
564 566 1.571919 AGCGTTCGATTAGACATGCC 58.428 50.000 0.00 0.00 0.00 4.40
565 567 1.134818 AGCGTTCGATTAGACATGCCA 60.135 47.619 0.00 0.00 0.00 4.92
566 568 1.663643 GCGTTCGATTAGACATGCCAA 59.336 47.619 0.00 0.00 0.00 4.52
567 569 2.287915 GCGTTCGATTAGACATGCCAAT 59.712 45.455 0.00 0.00 0.00 3.16
568 570 3.604772 GCGTTCGATTAGACATGCCAATC 60.605 47.826 0.00 0.00 0.00 2.67
569 571 3.555547 CGTTCGATTAGACATGCCAATCA 59.444 43.478 12.40 1.53 0.00 2.57
570 572 4.550831 CGTTCGATTAGACATGCCAATCAC 60.551 45.833 12.40 5.65 0.00 3.06
571 573 4.406648 TCGATTAGACATGCCAATCACT 57.593 40.909 12.40 0.00 0.00 3.41
572 574 4.122046 TCGATTAGACATGCCAATCACTG 58.878 43.478 12.40 1.07 0.00 3.66
573 575 4.122046 CGATTAGACATGCCAATCACTGA 58.878 43.478 12.40 0.00 0.00 3.41
574 576 4.571984 CGATTAGACATGCCAATCACTGAA 59.428 41.667 12.40 0.00 0.00 3.02
575 577 5.065090 CGATTAGACATGCCAATCACTGAAA 59.935 40.000 12.40 0.00 0.00 2.69
576 578 5.627499 TTAGACATGCCAATCACTGAAAC 57.373 39.130 0.00 0.00 0.00 2.78
577 579 3.489355 AGACATGCCAATCACTGAAACA 58.511 40.909 0.00 0.00 0.00 2.83
578 580 3.890756 AGACATGCCAATCACTGAAACAA 59.109 39.130 0.00 0.00 0.00 2.83
579 581 4.525487 AGACATGCCAATCACTGAAACAAT 59.475 37.500 0.00 0.00 0.00 2.71
580 582 4.813027 ACATGCCAATCACTGAAACAATC 58.187 39.130 0.00 0.00 0.00 2.67
581 583 4.281435 ACATGCCAATCACTGAAACAATCA 59.719 37.500 0.00 0.00 36.38 2.57
582 584 4.241590 TGCCAATCACTGAAACAATCAC 57.758 40.909 0.00 0.00 33.47 3.06
583 585 3.890756 TGCCAATCACTGAAACAATCACT 59.109 39.130 0.00 0.00 33.47 3.41
584 586 4.232221 GCCAATCACTGAAACAATCACTG 58.768 43.478 0.00 0.00 33.47 3.66
585 587 4.022935 GCCAATCACTGAAACAATCACTGA 60.023 41.667 0.00 0.00 35.98 3.41
586 588 5.455392 CCAATCACTGAAACAATCACTGAC 58.545 41.667 0.00 0.00 34.86 3.51
587 589 5.455392 CAATCACTGAAACAATCACTGACC 58.545 41.667 0.00 0.00 34.86 4.02
588 590 4.149511 TCACTGAAACAATCACTGACCA 57.850 40.909 0.00 0.00 33.47 4.02
589 591 4.129380 TCACTGAAACAATCACTGACCAG 58.871 43.478 0.00 0.00 33.47 4.00
590 592 3.879295 CACTGAAACAATCACTGACCAGT 59.121 43.478 0.00 0.00 43.61 4.00
591 593 5.056480 CACTGAAACAATCACTGACCAGTA 58.944 41.667 1.95 0.00 40.20 2.74
592 594 5.527214 CACTGAAACAATCACTGACCAGTAA 59.473 40.000 1.95 0.00 40.20 2.24
593 595 5.527582 ACTGAAACAATCACTGACCAGTAAC 59.472 40.000 1.95 0.00 40.20 2.50
594 596 5.432645 TGAAACAATCACTGACCAGTAACA 58.567 37.500 1.95 0.00 40.20 2.41
595 597 5.295787 TGAAACAATCACTGACCAGTAACAC 59.704 40.000 1.95 0.00 40.20 3.32
596 598 3.740115 ACAATCACTGACCAGTAACACC 58.260 45.455 1.95 0.00 40.20 4.16
597 599 3.391296 ACAATCACTGACCAGTAACACCT 59.609 43.478 1.95 0.00 40.20 4.00
598 600 4.591498 ACAATCACTGACCAGTAACACCTA 59.409 41.667 1.95 0.00 40.20 3.08
599 601 5.071250 ACAATCACTGACCAGTAACACCTAA 59.929 40.000 1.95 0.00 40.20 2.69
600 602 4.595762 TCACTGACCAGTAACACCTAAC 57.404 45.455 1.95 0.00 40.20 2.34
601 603 3.322828 TCACTGACCAGTAACACCTAACC 59.677 47.826 1.95 0.00 40.20 2.85
602 604 3.070446 CACTGACCAGTAACACCTAACCA 59.930 47.826 1.95 0.00 40.20 3.67
603 605 3.712733 ACTGACCAGTAACACCTAACCAA 59.287 43.478 0.03 0.00 40.43 3.67
604 606 4.349930 ACTGACCAGTAACACCTAACCAAT 59.650 41.667 0.03 0.00 40.43 3.16
605 607 4.901868 TGACCAGTAACACCTAACCAATC 58.098 43.478 0.00 0.00 0.00 2.67
606 608 4.348461 TGACCAGTAACACCTAACCAATCA 59.652 41.667 0.00 0.00 0.00 2.57
607 609 4.648651 ACCAGTAACACCTAACCAATCAC 58.351 43.478 0.00 0.00 0.00 3.06
608 610 4.349930 ACCAGTAACACCTAACCAATCACT 59.650 41.667 0.00 0.00 0.00 3.41
609 611 4.695455 CCAGTAACACCTAACCAATCACTG 59.305 45.833 0.00 0.00 0.00 3.66
610 612 5.512404 CCAGTAACACCTAACCAATCACTGA 60.512 44.000 0.00 0.00 34.24 3.41
611 613 6.173339 CAGTAACACCTAACCAATCACTGAT 58.827 40.000 0.00 0.00 34.24 2.90
612 614 6.655003 CAGTAACACCTAACCAATCACTGATT 59.345 38.462 0.00 0.00 34.24 2.57
613 615 7.822334 CAGTAACACCTAACCAATCACTGATTA 59.178 37.037 3.88 0.00 34.24 1.75
614 616 8.548877 AGTAACACCTAACCAATCACTGATTAT 58.451 33.333 3.88 0.00 30.44 1.28
615 617 7.865706 AACACCTAACCAATCACTGATTATC 57.134 36.000 3.88 0.00 30.44 1.75
616 618 7.200434 ACACCTAACCAATCACTGATTATCT 57.800 36.000 3.88 0.00 30.44 1.98
617 619 7.050377 ACACCTAACCAATCACTGATTATCTG 58.950 38.462 3.88 0.00 30.44 2.90
618 620 7.092891 ACACCTAACCAATCACTGATTATCTGA 60.093 37.037 3.88 0.00 30.44 3.27
619 621 7.770433 CACCTAACCAATCACTGATTATCTGAA 59.230 37.037 3.88 0.00 30.44 3.02
620 622 7.989741 ACCTAACCAATCACTGATTATCTGAAG 59.010 37.037 3.88 0.00 30.44 3.02
621 623 8.206867 CCTAACCAATCACTGATTATCTGAAGA 58.793 37.037 3.88 4.29 30.44 2.87
622 624 9.775854 CTAACCAATCACTGATTATCTGAAGAT 57.224 33.333 3.88 6.16 38.51 2.40
623 625 8.447924 AACCAATCACTGATTATCTGAAGATG 57.552 34.615 3.88 0.97 36.05 2.90
624 626 7.799081 ACCAATCACTGATTATCTGAAGATGA 58.201 34.615 3.88 0.00 36.05 2.92
625 627 7.932491 ACCAATCACTGATTATCTGAAGATGAG 59.068 37.037 3.88 6.66 36.05 2.90
626 628 8.148999 CCAATCACTGATTATCTGAAGATGAGA 58.851 37.037 3.88 0.00 36.05 3.27
627 629 9.713713 CAATCACTGATTATCTGAAGATGAGAT 57.286 33.333 3.88 0.00 36.05 2.75
628 630 9.932207 AATCACTGATTATCTGAAGATGAGATC 57.068 33.333 2.17 5.09 36.05 2.75
629 631 8.709272 TCACTGATTATCTGAAGATGAGATCT 57.291 34.615 6.11 0.00 42.61 2.75
642 644 6.360844 AGATGAGATCTTTGCTCAATTTCG 57.639 37.500 0.00 0.00 44.71 3.46
643 645 4.952262 TGAGATCTTTGCTCAATTTCGG 57.048 40.909 0.00 0.00 39.29 4.30
644 646 4.578871 TGAGATCTTTGCTCAATTTCGGA 58.421 39.130 0.00 0.00 39.29 4.55
645 647 5.188434 TGAGATCTTTGCTCAATTTCGGAT 58.812 37.500 0.00 0.00 39.29 4.18
646 648 6.348498 TGAGATCTTTGCTCAATTTCGGATA 58.652 36.000 0.00 0.00 39.29 2.59
647 649 6.823182 TGAGATCTTTGCTCAATTTCGGATAA 59.177 34.615 0.00 0.00 39.29 1.75
648 650 7.336679 TGAGATCTTTGCTCAATTTCGGATAAA 59.663 33.333 0.00 0.00 39.29 1.40
649 651 8.055279 AGATCTTTGCTCAATTTCGGATAAAA 57.945 30.769 0.00 0.00 0.00 1.52
650 652 8.522830 AGATCTTTGCTCAATTTCGGATAAAAA 58.477 29.630 0.00 0.00 0.00 1.94
668 670 3.942130 AAAATGCCCAAACTAGCTCAC 57.058 42.857 0.00 0.00 0.00 3.51
669 671 2.584835 AATGCCCAAACTAGCTCACA 57.415 45.000 0.00 0.00 0.00 3.58
670 672 2.814805 ATGCCCAAACTAGCTCACAT 57.185 45.000 0.00 0.00 0.00 3.21
671 673 2.113860 TGCCCAAACTAGCTCACATC 57.886 50.000 0.00 0.00 0.00 3.06
672 674 1.009829 GCCCAAACTAGCTCACATCG 58.990 55.000 0.00 0.00 0.00 3.84
673 675 1.676014 GCCCAAACTAGCTCACATCGT 60.676 52.381 0.00 0.00 0.00 3.73
674 676 2.699954 CCCAAACTAGCTCACATCGTT 58.300 47.619 0.00 0.00 0.00 3.85
675 677 2.673368 CCCAAACTAGCTCACATCGTTC 59.327 50.000 0.00 0.00 0.00 3.95
676 678 3.325870 CCAAACTAGCTCACATCGTTCA 58.674 45.455 0.00 0.00 0.00 3.18
677 679 3.935203 CCAAACTAGCTCACATCGTTCAT 59.065 43.478 0.00 0.00 0.00 2.57
678 680 4.201753 CCAAACTAGCTCACATCGTTCATG 60.202 45.833 0.00 0.00 38.64 3.07
680 682 4.193826 ACTAGCTCACATCGTTCATGTT 57.806 40.909 0.00 0.00 43.89 2.71
681 683 3.928992 ACTAGCTCACATCGTTCATGTTG 59.071 43.478 0.00 0.00 43.89 3.33
682 684 2.771089 AGCTCACATCGTTCATGTTGT 58.229 42.857 0.00 0.00 43.89 3.32
683 685 3.925379 AGCTCACATCGTTCATGTTGTA 58.075 40.909 0.00 0.00 43.89 2.41
684 686 3.679980 AGCTCACATCGTTCATGTTGTAC 59.320 43.478 0.00 0.00 43.89 2.90
685 687 3.679980 GCTCACATCGTTCATGTTGTACT 59.320 43.478 0.00 0.00 43.89 2.73
686 688 4.201628 GCTCACATCGTTCATGTTGTACTC 60.202 45.833 0.00 0.00 43.89 2.59
687 689 4.242475 TCACATCGTTCATGTTGTACTCC 58.758 43.478 0.00 0.00 43.89 3.85
688 690 3.370978 CACATCGTTCATGTTGTACTCCC 59.629 47.826 0.00 0.00 43.89 4.30
689 691 3.260884 ACATCGTTCATGTTGTACTCCCT 59.739 43.478 0.00 0.00 43.89 4.20
690 692 3.587797 TCGTTCATGTTGTACTCCCTC 57.412 47.619 0.00 0.00 0.00 4.30
691 693 2.232941 TCGTTCATGTTGTACTCCCTCC 59.767 50.000 0.00 0.00 0.00 4.30
692 694 2.233922 CGTTCATGTTGTACTCCCTCCT 59.766 50.000 0.00 0.00 0.00 3.69
693 695 3.676324 CGTTCATGTTGTACTCCCTCCTC 60.676 52.174 0.00 0.00 0.00 3.71
694 696 3.184382 TCATGTTGTACTCCCTCCTCA 57.816 47.619 0.00 0.00 0.00 3.86
695 697 3.724478 TCATGTTGTACTCCCTCCTCAT 58.276 45.455 0.00 0.00 0.00 2.90
696 698 4.878968 TCATGTTGTACTCCCTCCTCATA 58.121 43.478 0.00 0.00 0.00 2.15
697 699 5.277250 TCATGTTGTACTCCCTCCTCATAA 58.723 41.667 0.00 0.00 0.00 1.90
698 700 5.905331 TCATGTTGTACTCCCTCCTCATAAT 59.095 40.000 0.00 0.00 0.00 1.28
699 701 5.614324 TGTTGTACTCCCTCCTCATAATG 57.386 43.478 0.00 0.00 0.00 1.90
700 702 5.030147 TGTTGTACTCCCTCCTCATAATGT 58.970 41.667 0.00 0.00 0.00 2.71
701 703 6.199376 TGTTGTACTCCCTCCTCATAATGTA 58.801 40.000 0.00 0.00 0.00 2.29
702 704 6.323996 TGTTGTACTCCCTCCTCATAATGTAG 59.676 42.308 0.00 0.00 0.00 2.74
703 705 6.027025 TGTACTCCCTCCTCATAATGTAGT 57.973 41.667 0.00 0.00 0.00 2.73
704 706 6.441222 TGTACTCCCTCCTCATAATGTAGTT 58.559 40.000 0.00 0.00 0.00 2.24
705 707 6.550108 TGTACTCCCTCCTCATAATGTAGTTC 59.450 42.308 0.00 0.00 0.00 3.01
706 708 4.585162 ACTCCCTCCTCATAATGTAGTTCG 59.415 45.833 0.00 0.00 0.00 3.95
707 709 4.543689 TCCCTCCTCATAATGTAGTTCGT 58.456 43.478 0.00 0.00 0.00 3.85
708 710 5.698104 TCCCTCCTCATAATGTAGTTCGTA 58.302 41.667 0.00 0.00 0.00 3.43
709 711 6.312529 TCCCTCCTCATAATGTAGTTCGTAT 58.687 40.000 0.00 0.00 0.00 3.06
710 712 7.464273 TCCCTCCTCATAATGTAGTTCGTATA 58.536 38.462 0.00 0.00 0.00 1.47
711 713 8.114102 TCCCTCCTCATAATGTAGTTCGTATAT 58.886 37.037 0.00 0.00 0.00 0.86
712 714 8.750298 CCCTCCTCATAATGTAGTTCGTATATT 58.250 37.037 0.00 0.00 0.00 1.28
757 759 9.699410 ATAGATTTTGACCAAGTTCATATGGAA 57.301 29.630 2.13 0.00 39.12 3.53
758 760 8.421249 AGATTTTGACCAAGTTCATATGGAAA 57.579 30.769 2.13 0.00 39.12 3.13
759 761 8.869109 AGATTTTGACCAAGTTCATATGGAAAA 58.131 29.630 2.13 0.00 39.12 2.29
760 762 9.487790 GATTTTGACCAAGTTCATATGGAAAAA 57.512 29.630 2.13 5.89 39.12 1.94
795 797 9.658799 ATCAAGAATACCAAATACATATCCTCG 57.341 33.333 0.00 0.00 0.00 4.63
796 798 8.094548 TCAAGAATACCAAATACATATCCTCGG 58.905 37.037 0.00 0.00 0.00 4.63
797 799 7.792364 AGAATACCAAATACATATCCTCGGA 57.208 36.000 0.00 0.00 0.00 4.55
798 800 8.380742 AGAATACCAAATACATATCCTCGGAT 57.619 34.615 3.61 3.61 38.54 4.18
799 801 9.488762 AGAATACCAAATACATATCCTCGGATA 57.511 33.333 8.04 8.04 40.80 2.59
800 802 9.530633 GAATACCAAATACATATCCTCGGATAC 57.469 37.037 7.78 0.00 39.56 2.24
801 803 6.928348 ACCAAATACATATCCTCGGATACA 57.072 37.500 7.78 0.00 39.56 2.29
802 804 7.496346 ACCAAATACATATCCTCGGATACAT 57.504 36.000 7.78 2.63 39.56 2.29
803 805 7.556844 ACCAAATACATATCCTCGGATACATC 58.443 38.462 7.78 0.00 39.56 3.06
804 806 7.180229 ACCAAATACATATCCTCGGATACATCA 59.820 37.037 7.78 0.00 39.56 3.07
805 807 7.492669 CCAAATACATATCCTCGGATACATCAC 59.507 40.741 7.78 0.00 39.56 3.06
806 808 7.718334 AATACATATCCTCGGATACATCACA 57.282 36.000 7.78 0.00 39.56 3.58
807 809 7.718334 ATACATATCCTCGGATACATCACAA 57.282 36.000 7.78 0.00 39.56 3.33
808 810 6.030548 ACATATCCTCGGATACATCACAAG 57.969 41.667 7.78 0.00 39.56 3.16
809 811 5.775195 ACATATCCTCGGATACATCACAAGA 59.225 40.000 7.78 0.00 39.56 3.02
810 812 4.592485 ATCCTCGGATACATCACAAGAC 57.408 45.455 0.00 0.00 32.36 3.01
811 813 2.357952 TCCTCGGATACATCACAAGACG 59.642 50.000 0.00 0.00 0.00 4.18
812 814 2.099263 CCTCGGATACATCACAAGACGT 59.901 50.000 0.00 0.00 0.00 4.34
813 815 3.314357 CCTCGGATACATCACAAGACGTA 59.686 47.826 0.00 0.00 0.00 3.57
814 816 4.280461 CTCGGATACATCACAAGACGTAC 58.720 47.826 0.00 0.00 0.00 3.67
815 817 3.943381 TCGGATACATCACAAGACGTACT 59.057 43.478 0.00 0.00 0.00 2.73
816 818 4.397103 TCGGATACATCACAAGACGTACTT 59.603 41.667 0.00 0.00 39.70 2.24
817 819 5.100259 CGGATACATCACAAGACGTACTTT 58.900 41.667 0.00 0.00 36.61 2.66
818 820 5.229469 CGGATACATCACAAGACGTACTTTC 59.771 44.000 0.00 0.00 36.61 2.62
819 821 6.097356 GGATACATCACAAGACGTACTTTCA 58.903 40.000 0.00 0.00 36.61 2.69
820 822 6.757010 GGATACATCACAAGACGTACTTTCAT 59.243 38.462 0.00 0.00 36.61 2.57
821 823 7.919091 GGATACATCACAAGACGTACTTTCATA 59.081 37.037 0.00 0.00 36.61 2.15
822 824 9.464714 GATACATCACAAGACGTACTTTCATAT 57.535 33.333 0.00 0.00 36.61 1.78
823 825 9.817809 ATACATCACAAGACGTACTTTCATATT 57.182 29.630 0.00 0.00 36.61 1.28
824 826 7.963981 ACATCACAAGACGTACTTTCATATTG 58.036 34.615 0.00 0.00 36.61 1.90
825 827 7.602644 ACATCACAAGACGTACTTTCATATTGT 59.397 33.333 0.00 0.00 36.61 2.71
826 828 9.083080 CATCACAAGACGTACTTTCATATTGTA 57.917 33.333 0.00 0.00 36.61 2.41
827 829 9.817809 ATCACAAGACGTACTTTCATATTGTAT 57.182 29.630 0.00 0.00 36.61 2.29
921 923 9.381033 TCAGAATATCTATAAGTACTACTCGCC 57.619 37.037 0.00 0.00 0.00 5.54
922 924 8.329583 CAGAATATCTATAAGTACTACTCGCCG 58.670 40.741 0.00 0.00 0.00 6.46
923 925 4.943142 ATCTATAAGTACTACTCGCCGC 57.057 45.455 0.00 0.00 0.00 6.53
924 926 3.070018 TCTATAAGTACTACTCGCCGCC 58.930 50.000 0.00 0.00 0.00 6.13
925 927 0.590195 ATAAGTACTACTCGCCGCCG 59.410 55.000 0.00 0.00 0.00 6.46
926 928 1.439353 TAAGTACTACTCGCCGCCGG 61.439 60.000 0.00 0.00 34.56 6.13
927 929 4.919987 GTACTACTCGCCGCCGGC 62.920 72.222 20.42 20.42 46.75 6.13
941 943 2.518825 CGGCTAGCCTACCGGACT 60.519 66.667 30.55 1.91 45.74 3.85
942 944 1.228063 CGGCTAGCCTACCGGACTA 60.228 63.158 30.55 3.15 45.74 2.59
943 945 1.235948 CGGCTAGCCTACCGGACTAG 61.236 65.000 30.55 14.16 45.74 2.57
944 946 0.178995 GGCTAGCCTACCGGACTAGT 60.179 60.000 27.17 0.00 38.35 2.57
945 947 0.953003 GCTAGCCTACCGGACTAGTG 59.047 60.000 9.46 0.00 38.35 2.74
946 948 1.606903 CTAGCCTACCGGACTAGTGG 58.393 60.000 9.46 0.00 34.79 4.00
947 949 0.466922 TAGCCTACCGGACTAGTGGC 60.467 60.000 9.46 10.85 40.54 5.01
948 950 2.056223 GCCTACCGGACTAGTGGCA 61.056 63.158 9.46 0.00 40.04 4.92
949 951 1.400530 GCCTACCGGACTAGTGGCAT 61.401 60.000 9.46 0.00 40.04 4.40
950 952 0.674534 CCTACCGGACTAGTGGCATC 59.325 60.000 9.46 0.00 0.00 3.91
951 953 1.399714 CTACCGGACTAGTGGCATCA 58.600 55.000 9.46 0.00 0.00 3.07
952 954 1.338337 CTACCGGACTAGTGGCATCAG 59.662 57.143 9.46 0.00 0.00 2.90
953 955 0.614979 ACCGGACTAGTGGCATCAGT 60.615 55.000 9.46 3.87 0.00 3.41
954 956 0.179100 CCGGACTAGTGGCATCAGTG 60.179 60.000 0.00 0.00 0.00 3.66
955 957 0.179100 CGGACTAGTGGCATCAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
956 958 0.905357 GGACTAGTGGCATCAGTGGT 59.095 55.000 0.00 0.00 40.13 4.16
957 959 2.301577 GACTAGTGGCATCAGTGGTC 57.698 55.000 0.00 2.80 43.91 4.02
958 960 1.644509 ACTAGTGGCATCAGTGGTCA 58.355 50.000 0.00 0.00 33.54 4.02
994 996 1.133668 AGCCAAGTTCATAGCCCCATC 60.134 52.381 0.00 0.00 0.00 3.51
997 999 0.179018 AAGTTCATAGCCCCATCGCC 60.179 55.000 0.00 0.00 0.00 5.54
998 1000 1.961277 GTTCATAGCCCCATCGCCG 60.961 63.158 0.00 0.00 0.00 6.46
1017 1019 4.095400 ATGGCGTCCTCCTCCCCT 62.095 66.667 0.00 0.00 0.00 4.79
1525 1540 1.610624 GGAACATCGTCCACCACATGT 60.611 52.381 0.00 0.00 37.65 3.21
1694 1763 4.133796 GCTGGCCAACCCATTCGC 62.134 66.667 7.01 0.00 44.33 4.70
1935 2065 2.874780 GTGTGCGACGACGGCTAG 60.875 66.667 9.67 0.00 40.15 3.42
1988 2118 3.058777 GGGTTTTGCGATTCAGTTACGAA 60.059 43.478 0.00 0.00 0.00 3.85
2055 2185 6.410540 ACATGTGAAAGAAGATTCTACTCCC 58.589 40.000 0.00 0.00 36.28 4.30
2056 2186 6.013379 ACATGTGAAAGAAGATTCTACTCCCA 60.013 38.462 0.00 0.00 36.28 4.37
2068 2198 6.841755 AGATTCTACTCCCAGTAGCTTTACAT 59.158 38.462 5.90 0.00 45.93 2.29
2085 2215 3.970332 TGGAGACACACAGGCACT 58.030 55.556 0.00 0.00 33.84 4.40
2096 2226 3.067091 AGGCACTGCTGTGAGGAG 58.933 61.111 25.94 0.81 46.55 3.69
2168 4402 5.772521 AGATGCAAAACACAACTATTCACC 58.227 37.500 0.00 0.00 0.00 4.02
2199 4433 1.342374 TGCTAGCCAGAGTCTCATCCA 60.342 52.381 13.29 0.00 0.00 3.41
2230 4464 2.457813 AGCACATGCCCATGGATAAA 57.542 45.000 15.22 0.00 42.91 1.40
2232 4466 1.342174 GCACATGCCCATGGATAAAGG 59.658 52.381 15.22 0.00 42.91 3.11
2233 4467 2.948115 CACATGCCCATGGATAAAGGA 58.052 47.619 15.22 0.00 42.91 3.36
2236 4475 1.208706 TGCCCATGGATAAAGGACGA 58.791 50.000 15.22 0.00 0.00 4.20
2297 4537 0.320421 CACGTCCCATTCTTCCACGT 60.320 55.000 0.00 0.00 44.21 4.49
2298 4538 0.320421 ACGTCCCATTCTTCCACGTG 60.320 55.000 9.08 9.08 41.90 4.49
2412 4669 4.083862 GTCCTCTGTCCGTGCCCC 62.084 72.222 0.00 0.00 0.00 5.80
2652 4946 6.481984 GTTACGCACGTACTCTTACTTATCT 58.518 40.000 1.73 0.00 0.00 1.98
2734 7509 6.083487 AGGACCACCAGTATACTGTAGTAA 57.917 41.667 27.07 0.00 42.27 2.24
2873 7648 4.767255 CCCCACACGCTCAGGCTC 62.767 72.222 0.00 0.00 36.09 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.462606 GTTAAGATTTAAGAGGAAATTGGAGGA 57.537 33.333 0.00 0.00 0.00 3.71
154 156 6.832520 TTATGCACTATGTGGTCACAATTT 57.167 33.333 7.92 0.00 45.41 1.82
181 183 8.238631 TGATGTTGTGTTCTGAATCATTATGTG 58.761 33.333 0.00 0.00 0.00 3.21
250 252 6.094048 CAGGATTAGTGCTTGCTTTAGCTTTA 59.906 38.462 0.00 0.00 41.76 1.85
260 262 1.929836 CGACTCAGGATTAGTGCTTGC 59.070 52.381 0.00 0.00 0.00 4.01
263 265 1.115467 CCCGACTCAGGATTAGTGCT 58.885 55.000 0.00 0.00 0.00 4.40
307 309 3.561213 CGATGCGCTGGTGCTCTG 61.561 66.667 9.73 0.00 36.97 3.35
320 322 0.803768 CTCAAGTGAGCCCGTCGATG 60.804 60.000 0.00 0.00 35.13 3.84
330 332 4.231325 CGCCAACGACAACTCAAGTGAG 62.231 54.545 6.77 6.77 44.48 3.51
336 338 1.954146 GCTCGCCAACGACAACTCA 60.954 57.895 0.00 0.00 45.12 3.41
345 347 1.448985 TATTCAACCAGCTCGCCAAC 58.551 50.000 0.00 0.00 0.00 3.77
352 354 4.018490 TGTGATGCATTATTCAACCAGCT 58.982 39.130 0.00 0.00 0.00 4.24
356 358 4.094887 ACGAGTGTGATGCATTATTCAACC 59.905 41.667 0.00 0.00 0.00 3.77
357 359 5.221891 ACGAGTGTGATGCATTATTCAAC 57.778 39.130 0.00 0.00 0.00 3.18
371 373 3.206791 CCGAGGAGGATCACGAGTGTG 62.207 61.905 2.97 0.00 45.06 3.82
372 374 1.032657 CCGAGGAGGATCACGAGTGT 61.033 60.000 2.97 0.00 45.00 3.55
373 375 1.730487 CCGAGGAGGATCACGAGTG 59.270 63.158 0.00 0.00 45.00 3.51
374 376 2.122167 GCCGAGGAGGATCACGAGT 61.122 63.158 0.00 0.00 45.00 4.18
375 377 2.725008 GCCGAGGAGGATCACGAG 59.275 66.667 0.00 0.00 45.00 4.18
376 378 2.833582 GGCCGAGGAGGATCACGA 60.834 66.667 0.00 0.00 45.00 4.35
377 379 2.635229 CTTGGCCGAGGAGGATCACG 62.635 65.000 12.81 0.00 45.00 4.35
378 380 1.144936 CTTGGCCGAGGAGGATCAC 59.855 63.158 12.81 0.00 45.00 3.06
379 381 0.032515 TACTTGGCCGAGGAGGATCA 60.033 55.000 24.40 0.00 45.00 2.92
380 382 0.389757 GTACTTGGCCGAGGAGGATC 59.610 60.000 24.40 0.00 45.00 3.36
381 383 1.049289 GGTACTTGGCCGAGGAGGAT 61.049 60.000 24.40 5.10 45.00 3.24
382 384 1.684734 GGTACTTGGCCGAGGAGGA 60.685 63.158 24.40 3.57 45.00 3.71
383 385 2.901042 GGTACTTGGCCGAGGAGG 59.099 66.667 24.40 0.00 44.97 4.30
392 394 2.744709 CCAACCGCCGGTACTTGG 60.745 66.667 10.30 10.63 33.12 3.61
393 395 2.030958 GACCAACCGCCGGTACTTG 61.031 63.158 10.30 3.93 36.69 3.16
394 396 2.344872 GACCAACCGCCGGTACTT 59.655 61.111 10.30 0.00 36.69 2.24
395 397 3.698820 GGACCAACCGCCGGTACT 61.699 66.667 10.30 0.00 36.69 2.73
396 398 3.654173 GAGGACCAACCGCCGGTAC 62.654 68.421 10.30 1.39 44.74 3.34
397 399 3.384532 GAGGACCAACCGCCGGTA 61.385 66.667 10.30 0.00 44.74 4.02
403 405 2.742372 CAAGGCGAGGACCAACCG 60.742 66.667 0.00 0.00 44.74 4.44
404 406 3.056328 GCAAGGCGAGGACCAACC 61.056 66.667 0.00 0.00 39.35 3.77
405 407 2.032681 AGCAAGGCGAGGACCAAC 59.967 61.111 0.00 0.00 0.00 3.77
406 408 2.172483 GAGAGCAAGGCGAGGACCAA 62.172 60.000 0.00 0.00 0.00 3.67
407 409 2.604686 AGAGCAAGGCGAGGACCA 60.605 61.111 0.00 0.00 0.00 4.02
408 410 2.185608 GAGAGCAAGGCGAGGACC 59.814 66.667 0.00 0.00 0.00 4.46
409 411 2.202676 CGAGAGCAAGGCGAGGAC 60.203 66.667 0.00 0.00 0.00 3.85
410 412 2.676822 ACGAGAGCAAGGCGAGGA 60.677 61.111 0.00 0.00 0.00 3.71
411 413 2.202676 GACGAGAGCAAGGCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
412 414 2.578178 CGACGAGAGCAAGGCGAG 60.578 66.667 0.00 0.00 0.00 5.03
413 415 4.116328 CCGACGAGAGCAAGGCGA 62.116 66.667 0.00 0.00 0.00 5.54
416 418 4.116328 TCGCCGACGAGAGCAAGG 62.116 66.667 0.00 0.00 45.12 3.61
425 427 0.587242 CAAGCAATTCATCGCCGACG 60.587 55.000 0.00 0.00 42.01 5.12
426 428 0.726827 TCAAGCAATTCATCGCCGAC 59.273 50.000 0.00 0.00 0.00 4.79
427 429 1.447945 TTCAAGCAATTCATCGCCGA 58.552 45.000 0.00 0.00 0.00 5.54
428 430 2.179589 CTTTCAAGCAATTCATCGCCG 58.820 47.619 0.00 0.00 0.00 6.46
441 443 2.029288 TCGCCAGCGAGCTTTCAAG 61.029 57.895 11.27 0.00 44.01 3.02
442 444 2.030412 TCGCCAGCGAGCTTTCAA 59.970 55.556 11.27 0.00 44.01 2.69
465 467 4.101790 CAACATGGTGGCGGTCGC 62.102 66.667 1.63 6.83 41.06 5.19
466 468 3.430862 CCAACATGGTGGCGGTCG 61.431 66.667 18.86 0.00 31.35 4.79
472 474 2.981560 GAGCGTGCCAACATGGTGG 61.982 63.158 26.33 26.33 43.42 4.61
473 475 2.562912 GAGCGTGCCAACATGGTG 59.437 61.111 2.91 2.91 43.42 4.17
474 476 2.672996 GGAGCGTGCCAACATGGT 60.673 61.111 0.00 0.00 45.98 3.55
475 477 1.996786 GATGGAGCGTGCCAACATGG 61.997 60.000 0.00 0.00 42.16 3.66
476 478 1.430632 GATGGAGCGTGCCAACATG 59.569 57.895 2.54 0.00 42.16 3.21
477 479 2.108514 CGATGGAGCGTGCCAACAT 61.109 57.895 2.54 0.00 42.16 2.71
478 480 2.741985 CGATGGAGCGTGCCAACA 60.742 61.111 2.54 0.00 42.16 3.33
479 481 4.166011 GCGATGGAGCGTGCCAAC 62.166 66.667 2.54 0.00 42.16 3.77
488 490 4.530857 GACCACCGGGCGATGGAG 62.531 72.222 15.35 0.00 39.46 3.86
500 502 0.736325 CGTTCGATGAGGTGGACCAC 60.736 60.000 16.86 16.86 38.89 4.16
501 503 1.589630 CGTTCGATGAGGTGGACCA 59.410 57.895 0.00 0.00 38.89 4.02
502 504 1.810030 GCGTTCGATGAGGTGGACC 60.810 63.158 0.00 0.00 0.00 4.46
503 505 2.158959 CGCGTTCGATGAGGTGGAC 61.159 63.158 0.00 0.00 38.10 4.02
504 506 2.180769 CGCGTTCGATGAGGTGGA 59.819 61.111 0.00 0.00 38.10 4.02
505 507 3.554692 GCGCGTTCGATGAGGTGG 61.555 66.667 8.43 0.00 38.10 4.61
506 508 3.902063 CGCGCGTTCGATGAGGTG 61.902 66.667 24.19 0.00 38.10 4.00
509 511 3.965701 GAGCGCGCGTTCGATGAG 61.966 66.667 29.96 0.00 38.10 2.90
510 512 4.769598 TGAGCGCGCGTTCGATGA 62.770 61.111 35.17 19.55 38.10 2.92
511 513 3.620428 ATGAGCGCGCGTTCGATG 61.620 61.111 35.17 7.01 38.10 3.84
512 514 3.620428 CATGAGCGCGCGTTCGAT 61.620 61.111 35.17 26.78 38.10 3.59
523 525 2.124570 ACCACATCCGCCATGAGC 60.125 61.111 0.00 0.00 36.21 4.26
524 526 0.179037 ATGACCACATCCGCCATGAG 60.179 55.000 0.00 0.00 36.21 2.90
525 527 0.255604 AATGACCACATCCGCCATGA 59.744 50.000 0.00 0.00 35.50 3.07
526 528 1.875514 CTAATGACCACATCCGCCATG 59.124 52.381 0.00 0.00 35.50 3.66
527 529 1.815408 GCTAATGACCACATCCGCCAT 60.815 52.381 0.00 0.00 35.50 4.40
528 530 0.463654 GCTAATGACCACATCCGCCA 60.464 55.000 0.00 0.00 35.50 5.69
529 531 1.498865 CGCTAATGACCACATCCGCC 61.499 60.000 0.00 0.00 35.50 6.13
530 532 0.810031 ACGCTAATGACCACATCCGC 60.810 55.000 0.00 0.00 35.50 5.54
531 533 1.593006 GAACGCTAATGACCACATCCG 59.407 52.381 0.00 0.00 35.50 4.18
532 534 1.593006 CGAACGCTAATGACCACATCC 59.407 52.381 0.00 0.00 35.50 3.51
533 535 2.536365 TCGAACGCTAATGACCACATC 58.464 47.619 0.00 0.00 35.50 3.06
534 536 2.665649 TCGAACGCTAATGACCACAT 57.334 45.000 0.00 0.00 38.50 3.21
535 537 2.665649 ATCGAACGCTAATGACCACA 57.334 45.000 0.00 0.00 0.00 4.17
536 538 4.206609 GTCTAATCGAACGCTAATGACCAC 59.793 45.833 0.00 0.00 0.00 4.16
537 539 4.142337 TGTCTAATCGAACGCTAATGACCA 60.142 41.667 0.00 0.00 0.00 4.02
538 540 4.357142 TGTCTAATCGAACGCTAATGACC 58.643 43.478 0.00 0.00 0.00 4.02
539 541 5.610552 GCATGTCTAATCGAACGCTAATGAC 60.611 44.000 0.00 0.00 0.00 3.06
540 542 4.444388 GCATGTCTAATCGAACGCTAATGA 59.556 41.667 0.00 0.00 0.00 2.57
541 543 4.376413 GGCATGTCTAATCGAACGCTAATG 60.376 45.833 0.00 0.00 0.00 1.90
542 544 3.741344 GGCATGTCTAATCGAACGCTAAT 59.259 43.478 0.00 0.00 0.00 1.73
543 545 3.120792 GGCATGTCTAATCGAACGCTAA 58.879 45.455 0.00 0.00 0.00 3.09
544 546 2.100087 TGGCATGTCTAATCGAACGCTA 59.900 45.455 0.00 0.00 0.00 4.26
545 547 1.134818 TGGCATGTCTAATCGAACGCT 60.135 47.619 0.00 0.00 0.00 5.07
546 548 1.286501 TGGCATGTCTAATCGAACGC 58.713 50.000 0.00 0.00 0.00 4.84
547 549 3.555547 TGATTGGCATGTCTAATCGAACG 59.444 43.478 15.81 0.00 43.25 3.95
548 550 4.572389 AGTGATTGGCATGTCTAATCGAAC 59.428 41.667 15.81 11.65 43.25 3.95
549 551 4.571984 CAGTGATTGGCATGTCTAATCGAA 59.428 41.667 15.81 0.00 43.25 3.71
550 552 4.122046 CAGTGATTGGCATGTCTAATCGA 58.878 43.478 15.81 0.00 43.25 3.59
551 553 4.122046 TCAGTGATTGGCATGTCTAATCG 58.878 43.478 15.81 7.15 43.25 3.34
552 554 6.127925 TGTTTCAGTGATTGGCATGTCTAATC 60.128 38.462 14.74 14.74 41.43 1.75
553 555 5.711506 TGTTTCAGTGATTGGCATGTCTAAT 59.288 36.000 0.00 0.00 0.00 1.73
554 556 5.069318 TGTTTCAGTGATTGGCATGTCTAA 58.931 37.500 0.00 0.00 0.00 2.10
555 557 4.650734 TGTTTCAGTGATTGGCATGTCTA 58.349 39.130 0.00 0.00 0.00 2.59
556 558 3.489355 TGTTTCAGTGATTGGCATGTCT 58.511 40.909 0.00 0.00 0.00 3.41
557 559 3.921119 TGTTTCAGTGATTGGCATGTC 57.079 42.857 0.00 0.00 0.00 3.06
558 560 4.281435 TGATTGTTTCAGTGATTGGCATGT 59.719 37.500 0.00 0.00 0.00 3.21
559 561 4.624024 GTGATTGTTTCAGTGATTGGCATG 59.376 41.667 0.00 0.00 34.17 4.06
560 562 4.525487 AGTGATTGTTTCAGTGATTGGCAT 59.475 37.500 0.00 0.00 36.62 4.40
561 563 3.890756 AGTGATTGTTTCAGTGATTGGCA 59.109 39.130 0.00 0.00 36.62 4.92
562 564 4.510038 AGTGATTGTTTCAGTGATTGGC 57.490 40.909 0.00 0.00 36.62 4.52
569 571 4.156455 ACTGGTCAGTGATTGTTTCAGT 57.844 40.909 2.46 1.80 40.75 3.41
570 572 5.527214 TGTTACTGGTCAGTGATTGTTTCAG 59.473 40.000 13.32 1.21 42.52 3.02
571 573 5.295787 GTGTTACTGGTCAGTGATTGTTTCA 59.704 40.000 13.32 0.00 42.52 2.69
572 574 5.277828 GGTGTTACTGGTCAGTGATTGTTTC 60.278 44.000 13.32 0.00 42.52 2.78
573 575 4.578928 GGTGTTACTGGTCAGTGATTGTTT 59.421 41.667 13.32 0.00 42.52 2.83
574 576 4.134563 GGTGTTACTGGTCAGTGATTGTT 58.865 43.478 13.32 0.00 42.52 2.83
575 577 3.391296 AGGTGTTACTGGTCAGTGATTGT 59.609 43.478 13.32 0.00 42.52 2.71
576 578 4.008074 AGGTGTTACTGGTCAGTGATTG 57.992 45.455 13.32 0.00 42.52 2.67
577 579 5.512576 GGTTAGGTGTTACTGGTCAGTGATT 60.513 44.000 13.32 0.00 42.52 2.57
578 580 4.020485 GGTTAGGTGTTACTGGTCAGTGAT 60.020 45.833 13.32 0.00 42.52 3.06
579 581 3.322828 GGTTAGGTGTTACTGGTCAGTGA 59.677 47.826 13.32 2.74 42.52 3.41
580 582 3.070446 TGGTTAGGTGTTACTGGTCAGTG 59.930 47.826 13.32 0.00 42.52 3.66
581 583 3.311091 TGGTTAGGTGTTACTGGTCAGT 58.689 45.455 8.74 8.74 45.02 3.41
582 584 4.345859 TTGGTTAGGTGTTACTGGTCAG 57.654 45.455 0.00 0.00 0.00 3.51
583 585 4.348461 TGATTGGTTAGGTGTTACTGGTCA 59.652 41.667 0.00 0.00 0.00 4.02
584 586 4.694037 GTGATTGGTTAGGTGTTACTGGTC 59.306 45.833 0.00 0.00 0.00 4.02
585 587 4.349930 AGTGATTGGTTAGGTGTTACTGGT 59.650 41.667 0.00 0.00 0.00 4.00
586 588 4.695455 CAGTGATTGGTTAGGTGTTACTGG 59.305 45.833 0.00 0.00 31.82 4.00
587 589 5.547465 TCAGTGATTGGTTAGGTGTTACTG 58.453 41.667 0.00 0.00 35.56 2.74
588 590 5.818678 TCAGTGATTGGTTAGGTGTTACT 57.181 39.130 0.00 0.00 0.00 2.24
589 591 8.732746 ATAATCAGTGATTGGTTAGGTGTTAC 57.267 34.615 25.48 0.00 35.89 2.50
590 592 8.768397 AGATAATCAGTGATTGGTTAGGTGTTA 58.232 33.333 25.48 4.07 35.89 2.41
591 593 7.554118 CAGATAATCAGTGATTGGTTAGGTGTT 59.446 37.037 25.48 0.91 35.89 3.32
592 594 7.050377 CAGATAATCAGTGATTGGTTAGGTGT 58.950 38.462 25.48 0.58 35.89 4.16
593 595 7.275183 TCAGATAATCAGTGATTGGTTAGGTG 58.725 38.462 25.48 13.58 35.89 4.00
594 596 7.437713 TCAGATAATCAGTGATTGGTTAGGT 57.562 36.000 25.48 2.01 35.89 3.08
595 597 8.206867 TCTTCAGATAATCAGTGATTGGTTAGG 58.793 37.037 25.48 11.64 35.89 2.69
596 598 9.775854 ATCTTCAGATAATCAGTGATTGGTTAG 57.224 33.333 25.48 15.08 35.89 2.34
597 599 9.551734 CATCTTCAGATAATCAGTGATTGGTTA 57.448 33.333 25.48 8.41 36.82 2.85
598 600 8.270030 TCATCTTCAGATAATCAGTGATTGGTT 58.730 33.333 25.48 11.96 33.95 3.67
599 601 7.799081 TCATCTTCAGATAATCAGTGATTGGT 58.201 34.615 25.48 15.17 33.95 3.67
600 602 8.148999 TCTCATCTTCAGATAATCAGTGATTGG 58.851 37.037 25.48 13.44 33.95 3.16
601 603 9.713713 ATCTCATCTTCAGATAATCAGTGATTG 57.286 33.333 25.48 11.73 33.95 2.67
602 604 9.932207 GATCTCATCTTCAGATAATCAGTGATT 57.068 33.333 21.57 21.57 36.20 2.57
603 605 9.316594 AGATCTCATCTTCAGATAATCAGTGAT 57.683 33.333 0.00 0.00 35.76 3.06
604 606 8.709272 AGATCTCATCTTCAGATAATCAGTGA 57.291 34.615 0.00 0.00 35.76 3.41
619 621 5.296283 CCGAAATTGAGCAAAGATCTCATCT 59.704 40.000 0.00 0.00 39.96 2.90
620 622 5.295292 TCCGAAATTGAGCAAAGATCTCATC 59.705 40.000 0.00 0.00 39.96 2.92
621 623 5.188434 TCCGAAATTGAGCAAAGATCTCAT 58.812 37.500 0.00 0.00 39.96 2.90
622 624 4.578871 TCCGAAATTGAGCAAAGATCTCA 58.421 39.130 0.00 0.00 38.67 3.27
623 625 5.747951 ATCCGAAATTGAGCAAAGATCTC 57.252 39.130 0.00 0.00 0.00 2.75
624 626 7.630242 TTTATCCGAAATTGAGCAAAGATCT 57.370 32.000 0.00 0.00 0.00 2.75
625 627 8.687824 TTTTTATCCGAAATTGAGCAAAGATC 57.312 30.769 0.00 0.00 0.00 2.75
647 649 3.640967 TGTGAGCTAGTTTGGGCATTTTT 59.359 39.130 0.00 0.00 0.00 1.94
648 650 3.230134 TGTGAGCTAGTTTGGGCATTTT 58.770 40.909 0.00 0.00 0.00 1.82
649 651 2.875296 TGTGAGCTAGTTTGGGCATTT 58.125 42.857 0.00 0.00 0.00 2.32
650 652 2.584835 TGTGAGCTAGTTTGGGCATT 57.415 45.000 0.00 0.00 0.00 3.56
651 653 2.648059 GATGTGAGCTAGTTTGGGCAT 58.352 47.619 0.00 0.00 0.00 4.40
652 654 1.675714 CGATGTGAGCTAGTTTGGGCA 60.676 52.381 0.00 0.00 0.00 5.36
653 655 1.009829 CGATGTGAGCTAGTTTGGGC 58.990 55.000 0.00 0.00 0.00 5.36
654 656 2.386661 ACGATGTGAGCTAGTTTGGG 57.613 50.000 0.00 0.00 0.00 4.12
655 657 3.325870 TGAACGATGTGAGCTAGTTTGG 58.674 45.455 0.00 0.00 0.00 3.28
656 658 4.389992 ACATGAACGATGTGAGCTAGTTTG 59.610 41.667 0.00 0.00 44.12 2.93
657 659 4.569943 ACATGAACGATGTGAGCTAGTTT 58.430 39.130 0.00 0.00 44.12 2.66
658 660 4.193826 ACATGAACGATGTGAGCTAGTT 57.806 40.909 0.00 0.00 44.12 2.24
659 661 3.876274 ACATGAACGATGTGAGCTAGT 57.124 42.857 0.00 0.00 44.12 2.57
660 662 3.928992 ACAACATGAACGATGTGAGCTAG 59.071 43.478 0.00 0.00 45.12 3.42
661 663 3.925379 ACAACATGAACGATGTGAGCTA 58.075 40.909 0.00 0.00 45.12 3.32
662 664 2.771089 ACAACATGAACGATGTGAGCT 58.229 42.857 0.00 0.00 45.12 4.09
663 665 3.679980 AGTACAACATGAACGATGTGAGC 59.320 43.478 0.00 0.00 45.12 4.26
664 666 4.327357 GGAGTACAACATGAACGATGTGAG 59.673 45.833 0.00 0.00 45.12 3.51
665 667 4.242475 GGAGTACAACATGAACGATGTGA 58.758 43.478 0.00 0.00 45.12 3.58
666 668 3.370978 GGGAGTACAACATGAACGATGTG 59.629 47.826 0.00 0.00 45.12 3.21
668 670 3.861840 AGGGAGTACAACATGAACGATG 58.138 45.455 0.00 0.00 38.15 3.84
669 671 3.118738 GGAGGGAGTACAACATGAACGAT 60.119 47.826 0.00 0.00 0.00 3.73
670 672 2.232941 GGAGGGAGTACAACATGAACGA 59.767 50.000 0.00 0.00 0.00 3.85
671 673 2.233922 AGGAGGGAGTACAACATGAACG 59.766 50.000 0.00 0.00 0.00 3.95
672 674 3.260884 TGAGGAGGGAGTACAACATGAAC 59.739 47.826 0.00 0.00 0.00 3.18
673 675 3.516586 TGAGGAGGGAGTACAACATGAA 58.483 45.455 0.00 0.00 0.00 2.57
674 676 3.184382 TGAGGAGGGAGTACAACATGA 57.816 47.619 0.00 0.00 0.00 3.07
675 677 5.614324 TTATGAGGAGGGAGTACAACATG 57.386 43.478 0.00 0.00 0.00 3.21
676 678 5.667626 ACATTATGAGGAGGGAGTACAACAT 59.332 40.000 0.00 0.00 0.00 2.71
677 679 5.030147 ACATTATGAGGAGGGAGTACAACA 58.970 41.667 0.00 0.00 0.00 3.33
678 680 5.615925 ACATTATGAGGAGGGAGTACAAC 57.384 43.478 0.00 0.00 0.00 3.32
679 681 6.441222 ACTACATTATGAGGAGGGAGTACAA 58.559 40.000 0.00 0.00 0.00 2.41
680 682 6.027025 ACTACATTATGAGGAGGGAGTACA 57.973 41.667 0.00 0.00 0.00 2.90
681 683 6.294065 CGAACTACATTATGAGGAGGGAGTAC 60.294 46.154 0.00 0.00 0.00 2.73
682 684 5.768662 CGAACTACATTATGAGGAGGGAGTA 59.231 44.000 0.00 0.00 0.00 2.59
683 685 4.585162 CGAACTACATTATGAGGAGGGAGT 59.415 45.833 0.00 0.00 0.00 3.85
684 686 4.585162 ACGAACTACATTATGAGGAGGGAG 59.415 45.833 0.00 0.00 0.00 4.30
685 687 4.543689 ACGAACTACATTATGAGGAGGGA 58.456 43.478 0.00 0.00 0.00 4.20
686 688 4.939052 ACGAACTACATTATGAGGAGGG 57.061 45.455 0.00 0.00 0.00 4.30
731 733 9.699410 TTCCATATGAACTTGGTCAAAATCTAT 57.301 29.630 3.65 0.00 34.48 1.98
732 734 9.527157 TTTCCATATGAACTTGGTCAAAATCTA 57.473 29.630 3.65 0.00 34.48 1.98
733 735 8.421249 TTTCCATATGAACTTGGTCAAAATCT 57.579 30.769 3.65 0.00 34.48 2.40
734 736 9.487790 TTTTTCCATATGAACTTGGTCAAAATC 57.512 29.630 3.65 0.00 34.48 2.17
769 771 9.658799 CGAGGATATGTATTTGGTATTCTTGAT 57.341 33.333 0.00 0.00 0.00 2.57
770 772 8.094548 CCGAGGATATGTATTTGGTATTCTTGA 58.905 37.037 0.00 0.00 0.00 3.02
771 773 8.094548 TCCGAGGATATGTATTTGGTATTCTTG 58.905 37.037 0.00 0.00 0.00 3.02
772 774 8.202461 TCCGAGGATATGTATTTGGTATTCTT 57.798 34.615 0.00 0.00 0.00 2.52
773 775 7.792364 TCCGAGGATATGTATTTGGTATTCT 57.208 36.000 0.00 0.00 0.00 2.40
774 776 9.530633 GTATCCGAGGATATGTATTTGGTATTC 57.469 37.037 14.24 0.00 39.04 1.75
775 777 9.042450 TGTATCCGAGGATATGTATTTGGTATT 57.958 33.333 14.24 0.00 39.04 1.89
776 778 8.603898 TGTATCCGAGGATATGTATTTGGTAT 57.396 34.615 14.24 0.00 39.04 2.73
777 779 8.603898 ATGTATCCGAGGATATGTATTTGGTA 57.396 34.615 14.24 0.00 39.04 3.25
778 780 6.928348 TGTATCCGAGGATATGTATTTGGT 57.072 37.500 14.24 0.00 39.04 3.67
779 781 7.492669 GTGATGTATCCGAGGATATGTATTTGG 59.507 40.741 14.24 0.00 39.04 3.28
780 782 8.034804 TGTGATGTATCCGAGGATATGTATTTG 58.965 37.037 14.24 0.00 39.04 2.32
781 783 8.134202 TGTGATGTATCCGAGGATATGTATTT 57.866 34.615 14.24 0.00 39.04 1.40
782 784 7.718334 TGTGATGTATCCGAGGATATGTATT 57.282 36.000 14.24 0.03 39.04 1.89
783 785 7.615757 TCTTGTGATGTATCCGAGGATATGTAT 59.384 37.037 14.24 9.69 39.04 2.29
784 786 6.946009 TCTTGTGATGTATCCGAGGATATGTA 59.054 38.462 14.24 5.84 39.04 2.29
785 787 5.775195 TCTTGTGATGTATCCGAGGATATGT 59.225 40.000 14.24 6.96 39.04 2.29
786 788 6.096036 GTCTTGTGATGTATCCGAGGATATG 58.904 44.000 14.24 0.00 39.04 1.78
787 789 5.106118 CGTCTTGTGATGTATCCGAGGATAT 60.106 44.000 14.24 1.43 39.04 1.63
788 790 4.215613 CGTCTTGTGATGTATCCGAGGATA 59.784 45.833 7.71 7.71 36.17 2.59
789 791 3.004839 CGTCTTGTGATGTATCCGAGGAT 59.995 47.826 9.80 9.80 38.54 3.24
790 792 2.357952 CGTCTTGTGATGTATCCGAGGA 59.642 50.000 0.00 0.00 0.00 3.71
791 793 2.099263 ACGTCTTGTGATGTATCCGAGG 59.901 50.000 0.00 0.00 40.35 4.63
792 794 3.422417 ACGTCTTGTGATGTATCCGAG 57.578 47.619 0.00 0.00 40.35 4.63
793 795 3.943381 AGTACGTCTTGTGATGTATCCGA 59.057 43.478 0.00 0.00 43.85 4.55
794 796 4.288670 AGTACGTCTTGTGATGTATCCG 57.711 45.455 0.00 0.00 43.85 4.18
795 797 6.097356 TGAAAGTACGTCTTGTGATGTATCC 58.903 40.000 0.00 0.00 43.85 2.59
796 798 7.757097 ATGAAAGTACGTCTTGTGATGTATC 57.243 36.000 0.00 0.00 43.85 2.24
797 799 9.817809 AATATGAAAGTACGTCTTGTGATGTAT 57.182 29.630 0.00 0.00 43.85 2.29
798 800 9.083080 CAATATGAAAGTACGTCTTGTGATGTA 57.917 33.333 0.00 0.00 42.02 2.29
799 801 7.602644 ACAATATGAAAGTACGTCTTGTGATGT 59.397 33.333 0.00 0.00 43.98 3.06
800 802 7.963981 ACAATATGAAAGTACGTCTTGTGATG 58.036 34.615 0.00 0.00 36.40 3.07
801 803 9.817809 ATACAATATGAAAGTACGTCTTGTGAT 57.182 29.630 0.00 0.00 36.40 3.06
895 897 9.381033 GGCGAGTAGTACTTATAGATATTCTGA 57.619 37.037 0.00 0.00 0.00 3.27
896 898 8.329583 CGGCGAGTAGTACTTATAGATATTCTG 58.670 40.741 0.00 0.00 0.00 3.02
897 899 7.011295 GCGGCGAGTAGTACTTATAGATATTCT 59.989 40.741 12.98 0.00 0.00 2.40
898 900 7.125113 GCGGCGAGTAGTACTTATAGATATTC 58.875 42.308 12.98 0.00 0.00 1.75
899 901 6.038050 GGCGGCGAGTAGTACTTATAGATATT 59.962 42.308 12.98 0.00 0.00 1.28
900 902 5.526846 GGCGGCGAGTAGTACTTATAGATAT 59.473 44.000 12.98 0.00 0.00 1.63
901 903 4.872691 GGCGGCGAGTAGTACTTATAGATA 59.127 45.833 12.98 0.00 0.00 1.98
902 904 3.688673 GGCGGCGAGTAGTACTTATAGAT 59.311 47.826 12.98 0.00 0.00 1.98
903 905 3.070018 GGCGGCGAGTAGTACTTATAGA 58.930 50.000 12.98 0.00 0.00 1.98
904 906 2.159734 CGGCGGCGAGTAGTACTTATAG 60.160 54.545 29.19 0.00 0.00 1.31
905 907 1.800586 CGGCGGCGAGTAGTACTTATA 59.199 52.381 29.19 0.00 0.00 0.98
906 908 0.590195 CGGCGGCGAGTAGTACTTAT 59.410 55.000 29.19 0.00 0.00 1.73
907 909 1.439353 CCGGCGGCGAGTAGTACTTA 61.439 60.000 34.49 0.00 0.00 2.24
908 910 2.768492 CCGGCGGCGAGTAGTACTT 61.768 63.158 34.49 0.00 0.00 2.24
909 911 3.207669 CCGGCGGCGAGTAGTACT 61.208 66.667 34.49 1.37 0.00 2.73
910 912 4.919987 GCCGGCGGCGAGTAGTAC 62.920 72.222 37.09 6.94 39.62 2.73
924 926 1.228063 TAGTCCGGTAGGCTAGCCG 60.228 63.158 27.83 21.20 46.80 5.52
925 927 0.178995 ACTAGTCCGGTAGGCTAGCC 60.179 60.000 27.19 27.19 42.64 3.93
926 928 0.953003 CACTAGTCCGGTAGGCTAGC 59.047 60.000 13.62 13.62 42.64 3.42
927 929 1.606903 CCACTAGTCCGGTAGGCTAG 58.393 60.000 17.06 17.06 43.55 3.42
928 930 0.466922 GCCACTAGTCCGGTAGGCTA 60.467 60.000 11.42 0.00 39.02 3.93
929 931 1.757340 GCCACTAGTCCGGTAGGCT 60.757 63.158 11.42 0.00 39.02 4.58
930 932 1.400530 ATGCCACTAGTCCGGTAGGC 61.401 60.000 11.71 11.71 42.32 3.93
931 933 0.674534 GATGCCACTAGTCCGGTAGG 59.325 60.000 0.00 0.00 39.46 3.18
932 934 1.338337 CTGATGCCACTAGTCCGGTAG 59.662 57.143 0.00 0.00 0.00 3.18
933 935 1.341679 ACTGATGCCACTAGTCCGGTA 60.342 52.381 0.00 0.00 0.00 4.02
934 936 0.614979 ACTGATGCCACTAGTCCGGT 60.615 55.000 0.00 0.00 0.00 5.28
935 937 0.179100 CACTGATGCCACTAGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
936 938 0.179100 CCACTGATGCCACTAGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
937 939 0.905357 ACCACTGATGCCACTAGTCC 59.095 55.000 0.00 0.00 0.00 3.85
938 940 1.550524 TGACCACTGATGCCACTAGTC 59.449 52.381 0.00 0.00 0.00 2.59
939 941 1.644509 TGACCACTGATGCCACTAGT 58.355 50.000 0.00 0.00 0.00 2.57
940 942 2.768253 TTGACCACTGATGCCACTAG 57.232 50.000 0.00 0.00 0.00 2.57
941 943 3.181445 ACTTTTGACCACTGATGCCACTA 60.181 43.478 0.00 0.00 0.00 2.74
942 944 2.233271 CTTTTGACCACTGATGCCACT 58.767 47.619 0.00 0.00 0.00 4.00
943 945 1.956477 ACTTTTGACCACTGATGCCAC 59.044 47.619 0.00 0.00 0.00 5.01
944 946 2.363306 ACTTTTGACCACTGATGCCA 57.637 45.000 0.00 0.00 0.00 4.92
945 947 4.278419 AGTTTACTTTTGACCACTGATGCC 59.722 41.667 0.00 0.00 0.00 4.40
946 948 5.215160 CAGTTTACTTTTGACCACTGATGC 58.785 41.667 0.00 0.00 34.74 3.91
947 949 5.215160 GCAGTTTACTTTTGACCACTGATG 58.785 41.667 1.32 0.00 34.74 3.07
948 950 4.278419 GGCAGTTTACTTTTGACCACTGAT 59.722 41.667 1.32 0.00 34.74 2.90
949 951 3.630312 GGCAGTTTACTTTTGACCACTGA 59.370 43.478 1.32 0.00 34.74 3.41
950 952 3.632145 AGGCAGTTTACTTTTGACCACTG 59.368 43.478 0.00 0.00 35.71 3.66
951 953 3.883489 GAGGCAGTTTACTTTTGACCACT 59.117 43.478 0.00 0.00 0.00 4.00
952 954 3.630312 TGAGGCAGTTTACTTTTGACCAC 59.370 43.478 0.00 0.00 0.00 4.16
953 955 3.882888 CTGAGGCAGTTTACTTTTGACCA 59.117 43.478 0.00 0.00 0.00 4.02
954 956 3.304726 GCTGAGGCAGTTTACTTTTGACC 60.305 47.826 0.00 0.00 38.54 4.02
955 957 3.304726 GGCTGAGGCAGTTTACTTTTGAC 60.305 47.826 0.00 0.00 40.87 3.18
956 958 2.884639 GGCTGAGGCAGTTTACTTTTGA 59.115 45.455 0.00 0.00 40.87 2.69
957 959 2.622942 TGGCTGAGGCAGTTTACTTTTG 59.377 45.455 3.93 0.00 40.87 2.44
958 960 2.944129 TGGCTGAGGCAGTTTACTTTT 58.056 42.857 3.93 0.00 40.87 2.27
998 1000 4.554036 GGGAGGAGGACGCCATGC 62.554 72.222 0.00 0.00 41.44 4.06
1165 1171 0.951040 CGGAGCTTGAGGTTGTGGTC 60.951 60.000 0.00 0.00 0.00 4.02
1947 2077 3.072622 ACCCAGGAGAGAACTGTAAAACC 59.927 47.826 0.00 0.00 34.16 3.27
2055 2185 4.627467 GTGTGTCTCCATGTAAAGCTACTG 59.373 45.833 0.00 0.00 0.00 2.74
2056 2186 4.283467 TGTGTGTCTCCATGTAAAGCTACT 59.717 41.667 0.00 0.00 0.00 2.57
2068 2198 1.447217 CAGTGCCTGTGTGTCTCCA 59.553 57.895 0.00 0.00 0.00 3.86
2077 2207 2.109517 CTCCTCACAGCAGTGCCTGT 62.110 60.000 12.58 12.59 46.47 4.00
2094 2224 1.067495 CACCTCTCACGGAAGGAACTC 60.067 57.143 0.00 0.00 38.49 3.01
2096 2226 0.680061 ACACCTCTCACGGAAGGAAC 59.320 55.000 0.00 0.00 0.00 3.62
2154 4388 3.403038 GCTGTGAGGTGAATAGTTGTGT 58.597 45.455 0.00 0.00 0.00 3.72
2199 4433 3.056607 GGGCATGTGCTTTATGTCACTTT 60.057 43.478 4.84 0.00 41.70 2.66
2230 4464 3.911698 TGTGTGCGTGCTCGTCCT 61.912 61.111 10.18 0.00 39.49 3.85
2232 4466 2.959599 TGTGTGTGCGTGCTCGTC 60.960 61.111 10.18 3.07 39.49 4.20
2233 4467 3.261951 GTGTGTGTGCGTGCTCGT 61.262 61.111 10.18 0.00 39.49 4.18
2236 4475 1.748879 AAAGGTGTGTGTGCGTGCT 60.749 52.632 0.00 0.00 0.00 4.40
2479 4737 3.323758 TAGCGATGTGTGTGGGGGC 62.324 63.158 0.00 0.00 0.00 5.80
2481 4739 0.740868 CACTAGCGATGTGTGTGGGG 60.741 60.000 0.00 0.00 0.00 4.96
2482 4740 0.740868 CCACTAGCGATGTGTGTGGG 60.741 60.000 0.00 0.00 43.01 4.61
2483 4741 0.740868 CCCACTAGCGATGTGTGTGG 60.741 60.000 0.00 0.00 45.42 4.17
2484 4742 1.361668 GCCCACTAGCGATGTGTGTG 61.362 60.000 7.61 0.00 33.92 3.82
2485 4743 1.079127 GCCCACTAGCGATGTGTGT 60.079 57.895 7.61 0.00 33.92 3.72
2492 4771 4.753662 ACCTCGGCCCACTAGCGA 62.754 66.667 0.00 0.00 0.00 4.93
2571 4851 2.202676 GAGCTTCCACTCGGAGCG 60.203 66.667 4.58 0.00 44.10 5.03
2600 4880 3.559242 AGTACTAGGCTTTACTACGAGCG 59.441 47.826 0.00 0.00 39.78 5.03
2638 4932 7.094075 TGCCGTTTCTTCAGATAAGTAAGAGTA 60.094 37.037 0.00 0.00 31.30 2.59
2639 4933 6.100668 GCCGTTTCTTCAGATAAGTAAGAGT 58.899 40.000 0.00 0.00 31.30 3.24
2640 4934 6.100004 TGCCGTTTCTTCAGATAAGTAAGAG 58.900 40.000 0.00 0.00 31.30 2.85
2641 4935 6.032956 TGCCGTTTCTTCAGATAAGTAAGA 57.967 37.500 0.00 0.00 0.00 2.10
2642 4936 6.721571 TTGCCGTTTCTTCAGATAAGTAAG 57.278 37.500 0.00 0.00 0.00 2.34
2643 4937 6.093495 CCATTGCCGTTTCTTCAGATAAGTAA 59.907 38.462 0.00 0.00 0.00 2.24
2652 4946 0.886938 TCGCCATTGCCGTTTCTTCA 60.887 50.000 0.00 0.00 0.00 3.02
2734 7509 2.238144 TCGCAGTACCCTGTACTCTACT 59.762 50.000 3.99 0.00 41.02 2.57
2746 7521 2.962253 GCTCGCCATCGCAGTACC 60.962 66.667 0.00 0.00 35.26 3.34
2871 7646 4.228097 CATTTCGCGGCGGCTGAG 62.228 66.667 23.46 10.01 36.88 3.35
2895 7670 4.516195 GGAAGACGGCGAGGAGGC 62.516 72.222 16.62 0.00 42.76 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.