Multiple sequence alignment - TraesCS5D01G435200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G435200 chr5D 100.000 4489 0 0 1 4489 490441606 490437118 0.000000e+00 8290
1 TraesCS5D01G435200 chr5D 97.562 2420 44 8 2077 4489 441571756 441569345 0.000000e+00 4128
2 TraesCS5D01G435200 chr5D 96.070 2061 52 7 1 2060 441573773 441571741 0.000000e+00 3330
3 TraesCS5D01G435200 chr6D 93.894 2342 111 21 2077 4408 420230690 420228371 0.000000e+00 3504
4 TraesCS5D01G435200 chr6D 94.012 835 45 5 1 832 420236800 420235968 0.000000e+00 1260
5 TraesCS5D01G435200 chr6D 89.623 954 83 9 1120 2060 420231625 420230675 0.000000e+00 1199
6 TraesCS5D01G435200 chr6D 94.990 479 21 2 4011 4489 28310772 28310297 0.000000e+00 749
7 TraesCS5D01G435200 chr6D 86.281 605 43 27 3451 4055 28311336 28310772 4.930000e-174 621
8 TraesCS5D01G435200 chr4A 93.131 2344 128 25 2077 4408 581495288 581492966 0.000000e+00 3406
9 TraesCS5D01G435200 chr4A 94.272 838 42 6 1 836 581498087 581497254 0.000000e+00 1277
10 TraesCS5D01G435200 chr4A 89.140 930 90 7 1137 2060 581496197 581495273 0.000000e+00 1147
11 TraesCS5D01G435200 chr4A 87.433 939 99 16 1133 2060 15921094 15920164 0.000000e+00 1062
12 TraesCS5D01G435200 chr4A 85.953 1018 96 24 477 1458 581497081 581496075 0.000000e+00 1044
13 TraesCS5D01G435200 chr4A 85.772 998 97 24 497 1458 15923354 15922366 0.000000e+00 1014
14 TraesCS5D01G435200 chr4A 93.896 557 24 7 2784 3335 682752135 682752686 0.000000e+00 832
15 TraesCS5D01G435200 chr5A 92.769 2337 118 21 2084 4408 611980600 611978303 0.000000e+00 3332
16 TraesCS5D01G435200 chr5A 93.506 1232 60 10 2077 3291 124618491 124619719 0.000000e+00 1814
17 TraesCS5D01G435200 chr5A 93.174 835 51 6 1 832 124606338 124607169 0.000000e+00 1221
18 TraesCS5D01G435200 chr5A 93.046 834 54 4 1 832 124611696 124612527 0.000000e+00 1216
19 TraesCS5D01G435200 chr5A 91.525 826 52 14 3585 4408 124621662 124622471 0.000000e+00 1122
20 TraesCS5D01G435200 chr5A 83.745 972 125 26 503 1458 124615080 124616034 0.000000e+00 889
21 TraesCS5D01G435200 chr7A 94.455 2020 73 25 2483 4489 47296922 47294929 0.000000e+00 3073
22 TraesCS5D01G435200 chr7A 86.478 1235 124 30 2265 3480 213100429 213101639 0.000000e+00 1315
23 TraesCS5D01G435200 chr7A 93.070 837 50 5 1 832 47300012 47299179 0.000000e+00 1218
24 TraesCS5D01G435200 chr7A 86.653 989 79 32 477 1451 47299001 47298052 0.000000e+00 1046
25 TraesCS5D01G435200 chr7A 88.955 670 60 13 1120 1782 47298186 47297524 0.000000e+00 815
26 TraesCS5D01G435200 chr7A 93.261 371 19 4 2077 2444 47297284 47296917 3.950000e-150 542
27 TraesCS5D01G435200 chr7A 92.803 264 15 1 1801 2060 47297532 47297269 3.280000e-101 379
28 TraesCS5D01G435200 chr7D 93.211 1738 67 25 2077 3797 44719327 44717624 0.000000e+00 2508
29 TraesCS5D01G435200 chr7D 93.564 839 47 5 1 836 44721992 44721158 0.000000e+00 1243
30 TraesCS5D01G435200 chr7D 93.750 672 27 8 3821 4489 44717534 44716875 0.000000e+00 994
31 TraesCS5D01G435200 chr7D 94.077 287 13 1 1778 2060 44719598 44719312 2.480000e-117 433
32 TraesCS5D01G435200 chr5B 90.086 1624 104 14 477 2060 604868702 604870308 0.000000e+00 2054
33 TraesCS5D01G435200 chr5B 94.921 1260 48 9 2077 3323 604870293 604871549 0.000000e+00 1958
34 TraesCS5D01G435200 chr5B 94.258 836 43 5 1 832 604864563 604865397 0.000000e+00 1273
35 TraesCS5D01G435200 chr5B 93.541 836 46 6 1 832 604867693 604868524 0.000000e+00 1238
36 TraesCS5D01G435200 chr5B 85.714 868 98 18 2619 3477 106270984 106271834 0.000000e+00 893
37 TraesCS5D01G435200 chr5B 94.989 459 20 2 4031 4489 604871911 604872366 0.000000e+00 717
38 TraesCS5D01G435200 chr5B 93.801 371 15 5 3627 3997 604871548 604871910 6.560000e-153 551
39 TraesCS5D01G435200 chr5B 85.143 525 69 5 3485 4009 106272031 106272546 3.080000e-146 529
40 TraesCS5D01G435200 chr1D 89.482 1198 83 24 2077 3263 439790882 439789717 0.000000e+00 1474
41 TraesCS5D01G435200 chr1D 87.043 957 93 25 1120 2060 439791809 439790868 0.000000e+00 1051
42 TraesCS5D01G435200 chr1B 85.427 1242 133 33 2265 3483 299551457 299550241 0.000000e+00 1247
43 TraesCS5D01G435200 chr1B 85.714 539 64 10 3478 4012 299550066 299549537 1.410000e-154 556
44 TraesCS5D01G435200 chr1B 82.857 385 33 12 3914 4292 68137590 68137233 9.370000e-82 315
45 TraesCS5D01G435200 chr1A 93.767 754 38 5 2494 3240 538399895 538400646 0.000000e+00 1123
46 TraesCS5D01G435200 chr6A 87.022 994 82 25 497 1452 29575314 29576298 0.000000e+00 1077
47 TraesCS5D01G435200 chr6A 85.810 1050 97 25 2446 3480 203220466 203221478 0.000000e+00 1066
48 TraesCS5D01G435200 chr6A 92.067 479 20 3 4011 4489 29577274 29577734 0.000000e+00 658
49 TraesCS5D01G435200 chr6A 92.448 384 23 3 3451 3834 29576716 29577093 1.100000e-150 544
50 TraesCS5D01G435200 chr6A 92.398 171 12 1 3882 4052 29577102 29577271 4.490000e-60 243
51 TraesCS5D01G435200 chr4D 91.575 724 48 8 2077 2792 472682495 472681777 0.000000e+00 987
52 TraesCS5D01G435200 chr4D 93.694 555 29 5 2785 3335 451038876 451039428 0.000000e+00 826
53 TraesCS5D01G435200 chr4D 94.043 470 24 3 2798 3263 472680725 472680256 0.000000e+00 710
54 TraesCS5D01G435200 chr7B 86.636 868 92 14 2619 3477 433800077 433800929 0.000000e+00 939
55 TraesCS5D01G435200 chr7B 87.619 525 57 4 3485 4009 433801125 433801641 1.790000e-168 603
56 TraesCS5D01G435200 chr7B 82.872 578 67 9 3806 4377 76003519 76004070 1.450000e-134 490
57 TraesCS5D01G435200 chr3A 85.155 869 102 19 2619 3477 282154337 282155188 0.000000e+00 865
58 TraesCS5D01G435200 chr3A 85.955 534 65 6 3478 4009 282155377 282155902 3.030000e-156 562
59 TraesCS5D01G435200 chr3D 93.405 561 25 7 2785 3335 562559868 562560426 0.000000e+00 821
60 TraesCS5D01G435200 chr2D 91.404 570 44 4 2917 3483 376351357 376351924 0.000000e+00 776
61 TraesCS5D01G435200 chr2D 84.794 388 25 9 3911 4292 30411777 30412136 4.270000e-95 359
62 TraesCS5D01G435200 chr2D 90.270 185 12 5 4225 4408 30412133 30412312 2.090000e-58 237
63 TraesCS5D01G435200 chr6B 84.948 764 91 14 2619 3373 84994426 84995174 0.000000e+00 752
64 TraesCS5D01G435200 chr2B 89.157 498 42 4 1537 2029 733161482 733161972 1.070000e-170 610
65 TraesCS5D01G435200 chr2B 81.952 543 84 11 1204 1739 733155508 733156043 8.860000e-122 448


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G435200 chr5D 490437118 490441606 4488 True 8290.000000 8290 100.000000 1 4489 1 chr5D.!!$R1 4488
1 TraesCS5D01G435200 chr5D 441569345 441573773 4428 True 3729.000000 4128 96.816000 1 4489 2 chr5D.!!$R2 4488
2 TraesCS5D01G435200 chr6D 420228371 420231625 3254 True 2351.500000 3504 91.758500 1120 4408 2 chr6D.!!$R3 3288
3 TraesCS5D01G435200 chr6D 420235968 420236800 832 True 1260.000000 1260 94.012000 1 832 1 chr6D.!!$R1 831
4 TraesCS5D01G435200 chr6D 28310297 28311336 1039 True 685.000000 749 90.635500 3451 4489 2 chr6D.!!$R2 1038
5 TraesCS5D01G435200 chr4A 581492966 581498087 5121 True 1718.500000 3406 90.624000 1 4408 4 chr4A.!!$R2 4407
6 TraesCS5D01G435200 chr4A 15920164 15923354 3190 True 1038.000000 1062 86.602500 497 2060 2 chr4A.!!$R1 1563
7 TraesCS5D01G435200 chr4A 682752135 682752686 551 False 832.000000 832 93.896000 2784 3335 1 chr4A.!!$F1 551
8 TraesCS5D01G435200 chr5A 611978303 611980600 2297 True 3332.000000 3332 92.769000 2084 4408 1 chr5A.!!$R1 2324
9 TraesCS5D01G435200 chr5A 124611696 124622471 10775 False 1260.250000 1814 90.455500 1 4408 4 chr5A.!!$F2 4407
10 TraesCS5D01G435200 chr5A 124606338 124607169 831 False 1221.000000 1221 93.174000 1 832 1 chr5A.!!$F1 831
11 TraesCS5D01G435200 chr7A 213100429 213101639 1210 False 1315.000000 1315 86.478000 2265 3480 1 chr7A.!!$F1 1215
12 TraesCS5D01G435200 chr7A 47294929 47300012 5083 True 1178.833333 3073 91.532833 1 4489 6 chr7A.!!$R1 4488
13 TraesCS5D01G435200 chr7D 44716875 44721992 5117 True 1294.500000 2508 93.650500 1 4489 4 chr7D.!!$R1 4488
14 TraesCS5D01G435200 chr5B 604864563 604872366 7803 False 1298.500000 2054 93.599333 1 4489 6 chr5B.!!$F2 4488
15 TraesCS5D01G435200 chr5B 106270984 106272546 1562 False 711.000000 893 85.428500 2619 4009 2 chr5B.!!$F1 1390
16 TraesCS5D01G435200 chr1D 439789717 439791809 2092 True 1262.500000 1474 88.262500 1120 3263 2 chr1D.!!$R1 2143
17 TraesCS5D01G435200 chr1B 299549537 299551457 1920 True 901.500000 1247 85.570500 2265 4012 2 chr1B.!!$R2 1747
18 TraesCS5D01G435200 chr1A 538399895 538400646 751 False 1123.000000 1123 93.767000 2494 3240 1 chr1A.!!$F1 746
19 TraesCS5D01G435200 chr6A 203220466 203221478 1012 False 1066.000000 1066 85.810000 2446 3480 1 chr6A.!!$F1 1034
20 TraesCS5D01G435200 chr6A 29575314 29577734 2420 False 630.500000 1077 90.983750 497 4489 4 chr6A.!!$F2 3992
21 TraesCS5D01G435200 chr4D 472680256 472682495 2239 True 848.500000 987 92.809000 2077 3263 2 chr4D.!!$R1 1186
22 TraesCS5D01G435200 chr4D 451038876 451039428 552 False 826.000000 826 93.694000 2785 3335 1 chr4D.!!$F1 550
23 TraesCS5D01G435200 chr7B 433800077 433801641 1564 False 771.000000 939 87.127500 2619 4009 2 chr7B.!!$F2 1390
24 TraesCS5D01G435200 chr7B 76003519 76004070 551 False 490.000000 490 82.872000 3806 4377 1 chr7B.!!$F1 571
25 TraesCS5D01G435200 chr3A 282154337 282155902 1565 False 713.500000 865 85.555000 2619 4009 2 chr3A.!!$F1 1390
26 TraesCS5D01G435200 chr3D 562559868 562560426 558 False 821.000000 821 93.405000 2785 3335 1 chr3D.!!$F1 550
27 TraesCS5D01G435200 chr2D 376351357 376351924 567 False 776.000000 776 91.404000 2917 3483 1 chr2D.!!$F1 566
28 TraesCS5D01G435200 chr2D 30411777 30412312 535 False 298.000000 359 87.532000 3911 4408 2 chr2D.!!$F2 497
29 TraesCS5D01G435200 chr6B 84994426 84995174 748 False 752.000000 752 84.948000 2619 3373 1 chr6B.!!$F1 754
30 TraesCS5D01G435200 chr2B 733155508 733156043 535 False 448.000000 448 81.952000 1204 1739 1 chr2B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 3039 2.029828 GGTGACTGTGATCTCAACGAGT 60.030 50.0 0.00 0.00 0.00 4.18 F
1772 15121 2.492449 TTCCTCGAGGAGCTTGTGCG 62.492 60.0 31.81 2.94 46.36 5.34 F
2497 15872 0.896923 TTTCAGGATTGCCATGGTGC 59.103 50.0 14.67 0.00 36.29 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 15302 0.907230 AGTGAGAGCAGGGGGAAGAC 60.907 60.000 0.0 0.0 0.00 3.01 R
2899 17336 0.318762 AGACTGAAGCGGGTCTCAAC 59.681 55.000 0.0 0.0 38.25 3.18 R
4453 21021 3.951775 AAGGCACAACACAAGAAAACA 57.048 38.095 0.0 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.050350 CACTCTCCGTTCCCCGCTA 61.050 63.158 0.00 0.00 34.38 4.26
180 182 2.479730 GGTATGCGTCGATTGTCTGAGT 60.480 50.000 0.00 0.00 0.00 3.41
310 2446 2.658422 GCCCGTCCGGACTTACAA 59.342 61.111 30.92 0.00 37.50 2.41
582 2721 8.812513 TCAATGGATTTAGTTGATTGTGATCT 57.187 30.769 0.00 0.00 33.28 2.75
606 2745 5.895928 TGAGGAGATAGTCAAAGATGTTCG 58.104 41.667 0.00 0.00 0.00 3.95
655 2794 7.865706 ATGGATTTAGTTAGGTGATTGTGAC 57.134 36.000 0.00 0.00 0.00 3.67
657 2796 6.653320 TGGATTTAGTTAGGTGATTGTGACAC 59.347 38.462 0.00 0.00 37.51 3.67
797 2937 7.394077 TGAGCATGGTGATTATTATATTGGTGG 59.606 37.037 0.00 0.00 0.00 4.61
798 2938 7.469343 AGCATGGTGATTATTATATTGGTGGA 58.531 34.615 0.00 0.00 0.00 4.02
799 2939 8.117956 AGCATGGTGATTATTATATTGGTGGAT 58.882 33.333 0.00 0.00 0.00 3.41
800 2940 9.407380 GCATGGTGATTATTATATTGGTGGATA 57.593 33.333 0.00 0.00 0.00 2.59
827 2967 9.883142 AACAAATCTTTGATTTAGTTTGGAACA 57.117 25.926 9.53 0.00 40.55 3.18
828 2968 9.883142 ACAAATCTTTGATTTAGTTTGGAACAA 57.117 25.926 9.53 0.00 41.86 2.83
845 2985 7.313951 TGGAACAATTTTCAACCAAATTCAC 57.686 32.000 0.00 0.00 34.70 3.18
846 2986 6.036517 TGGAACAATTTTCAACCAAATTCACG 59.963 34.615 0.00 0.00 34.70 4.35
847 2987 5.982465 ACAATTTTCAACCAAATTCACGG 57.018 34.783 0.00 0.00 34.70 4.94
848 2988 5.423886 ACAATTTTCAACCAAATTCACGGT 58.576 33.333 0.00 0.00 34.70 4.83
849 2989 5.293079 ACAATTTTCAACCAAATTCACGGTG 59.707 36.000 0.56 0.56 34.70 4.94
850 2990 3.444703 TTTCAACCAAATTCACGGTGG 57.555 42.857 8.50 0.00 35.08 4.61
851 2991 2.350057 TCAACCAAATTCACGGTGGA 57.650 45.000 8.50 0.00 35.08 4.02
852 2992 2.870175 TCAACCAAATTCACGGTGGAT 58.130 42.857 8.50 1.34 35.08 3.41
853 2993 3.226777 TCAACCAAATTCACGGTGGATT 58.773 40.909 8.88 8.88 35.08 3.01
854 2994 3.639094 TCAACCAAATTCACGGTGGATTT 59.361 39.130 19.36 19.36 35.08 2.17
855 2995 4.100189 TCAACCAAATTCACGGTGGATTTT 59.900 37.500 21.86 8.63 35.08 1.82
856 2996 3.988819 ACCAAATTCACGGTGGATTTTG 58.011 40.909 21.86 20.41 37.64 2.44
857 2997 3.639094 ACCAAATTCACGGTGGATTTTGA 59.361 39.130 24.82 0.00 39.04 2.69
858 2998 4.236935 CCAAATTCACGGTGGATTTTGAG 58.763 43.478 21.86 12.54 39.04 3.02
859 2999 4.236935 CAAATTCACGGTGGATTTTGAGG 58.763 43.478 21.86 9.46 39.04 3.86
860 3000 2.649531 TTCACGGTGGATTTTGAGGT 57.350 45.000 8.50 0.00 0.00 3.85
861 3001 2.649531 TCACGGTGGATTTTGAGGTT 57.350 45.000 8.50 0.00 0.00 3.50
862 3002 2.938838 TCACGGTGGATTTTGAGGTTT 58.061 42.857 8.50 0.00 0.00 3.27
863 3003 3.292460 TCACGGTGGATTTTGAGGTTTT 58.708 40.909 8.50 0.00 0.00 2.43
864 3004 3.067461 TCACGGTGGATTTTGAGGTTTTG 59.933 43.478 8.50 0.00 0.00 2.44
865 3005 3.028130 ACGGTGGATTTTGAGGTTTTGT 58.972 40.909 0.00 0.00 0.00 2.83
866 3006 3.449377 ACGGTGGATTTTGAGGTTTTGTT 59.551 39.130 0.00 0.00 0.00 2.83
867 3007 3.801594 CGGTGGATTTTGAGGTTTTGTTG 59.198 43.478 0.00 0.00 0.00 3.33
868 3008 4.126437 GGTGGATTTTGAGGTTTTGTTGG 58.874 43.478 0.00 0.00 0.00 3.77
869 3009 4.141824 GGTGGATTTTGAGGTTTTGTTGGA 60.142 41.667 0.00 0.00 0.00 3.53
870 3010 5.454613 GGTGGATTTTGAGGTTTTGTTGGAT 60.455 40.000 0.00 0.00 0.00 3.41
871 3011 6.054941 GTGGATTTTGAGGTTTTGTTGGATT 58.945 36.000 0.00 0.00 0.00 3.01
872 3012 6.542005 GTGGATTTTGAGGTTTTGTTGGATTT 59.458 34.615 0.00 0.00 0.00 2.17
873 3013 7.713073 GTGGATTTTGAGGTTTTGTTGGATTTA 59.287 33.333 0.00 0.00 0.00 1.40
874 3014 7.930865 TGGATTTTGAGGTTTTGTTGGATTTAG 59.069 33.333 0.00 0.00 0.00 1.85
875 3015 7.931407 GGATTTTGAGGTTTTGTTGGATTTAGT 59.069 33.333 0.00 0.00 0.00 2.24
876 3016 9.325198 GATTTTGAGGTTTTGTTGGATTTAGTT 57.675 29.630 0.00 0.00 0.00 2.24
878 3018 9.810545 TTTTGAGGTTTTGTTGGATTTAGTTAG 57.189 29.630 0.00 0.00 0.00 2.34
879 3019 7.519032 TGAGGTTTTGTTGGATTTAGTTAGG 57.481 36.000 0.00 0.00 0.00 2.69
880 3020 7.064229 TGAGGTTTTGTTGGATTTAGTTAGGT 58.936 34.615 0.00 0.00 0.00 3.08
881 3021 7.013846 TGAGGTTTTGTTGGATTTAGTTAGGTG 59.986 37.037 0.00 0.00 0.00 4.00
882 3022 7.064229 AGGTTTTGTTGGATTTAGTTAGGTGA 58.936 34.615 0.00 0.00 0.00 4.02
883 3023 7.013942 AGGTTTTGTTGGATTTAGTTAGGTGAC 59.986 37.037 0.00 0.00 0.00 3.67
885 3025 7.504924 TTTGTTGGATTTAGTTAGGTGACTG 57.495 36.000 0.00 0.00 43.88 3.51
886 3026 6.182507 TGTTGGATTTAGTTAGGTGACTGT 57.817 37.500 0.00 0.00 43.88 3.55
887 3027 5.995282 TGTTGGATTTAGTTAGGTGACTGTG 59.005 40.000 0.00 0.00 43.88 3.66
888 3028 6.183361 TGTTGGATTTAGTTAGGTGACTGTGA 60.183 38.462 0.00 0.00 43.88 3.58
889 3029 6.620877 TGGATTTAGTTAGGTGACTGTGAT 57.379 37.500 0.00 0.00 43.88 3.06
890 3030 6.640518 TGGATTTAGTTAGGTGACTGTGATC 58.359 40.000 0.00 0.00 43.88 2.92
891 3031 6.440647 TGGATTTAGTTAGGTGACTGTGATCT 59.559 38.462 0.00 0.00 43.88 2.75
892 3032 6.981559 GGATTTAGTTAGGTGACTGTGATCTC 59.018 42.308 0.00 0.00 43.88 2.75
893 3033 6.911250 TTTAGTTAGGTGACTGTGATCTCA 57.089 37.500 0.00 0.00 43.88 3.27
894 3034 6.911250 TTAGTTAGGTGACTGTGATCTCAA 57.089 37.500 0.00 0.00 43.88 3.02
895 3035 5.140747 AGTTAGGTGACTGTGATCTCAAC 57.859 43.478 0.00 0.00 43.88 3.18
896 3036 2.732412 AGGTGACTGTGATCTCAACG 57.268 50.000 0.00 0.00 41.13 4.10
897 3037 2.239400 AGGTGACTGTGATCTCAACGA 58.761 47.619 0.00 0.00 41.13 3.85
898 3038 2.230025 AGGTGACTGTGATCTCAACGAG 59.770 50.000 0.00 0.00 41.13 4.18
899 3039 2.029828 GGTGACTGTGATCTCAACGAGT 60.030 50.000 0.00 0.00 0.00 4.18
900 3040 3.553096 GGTGACTGTGATCTCAACGAGTT 60.553 47.826 0.00 0.00 0.00 3.01
901 3041 4.321008 GGTGACTGTGATCTCAACGAGTTA 60.321 45.833 0.00 0.00 0.00 2.24
902 3042 4.854291 GTGACTGTGATCTCAACGAGTTAG 59.146 45.833 0.00 0.00 0.00 2.34
903 3043 4.519350 TGACTGTGATCTCAACGAGTTAGT 59.481 41.667 0.00 0.00 0.00 2.24
904 3044 5.049398 ACTGTGATCTCAACGAGTTAGTC 57.951 43.478 0.00 0.00 0.00 2.59
905 3045 4.519350 ACTGTGATCTCAACGAGTTAGTCA 59.481 41.667 0.00 0.00 0.00 3.41
906 3046 5.009710 ACTGTGATCTCAACGAGTTAGTCAA 59.990 40.000 0.00 0.00 0.00 3.18
907 3047 5.838529 TGTGATCTCAACGAGTTAGTCAAA 58.161 37.500 0.00 0.00 0.00 2.69
908 3048 5.920840 TGTGATCTCAACGAGTTAGTCAAAG 59.079 40.000 0.00 0.00 0.00 2.77
909 3049 6.150318 GTGATCTCAACGAGTTAGTCAAAGA 58.850 40.000 0.00 0.00 0.00 2.52
910 3050 6.809196 GTGATCTCAACGAGTTAGTCAAAGAT 59.191 38.462 0.00 0.00 0.00 2.40
911 3051 6.808704 TGATCTCAACGAGTTAGTCAAAGATG 59.191 38.462 0.00 0.00 0.00 2.90
912 3052 6.085555 TCTCAACGAGTTAGTCAAAGATGT 57.914 37.500 0.00 0.00 0.00 3.06
913 3053 6.513180 TCTCAACGAGTTAGTCAAAGATGTT 58.487 36.000 0.00 0.00 0.00 2.71
914 3054 6.984474 TCTCAACGAGTTAGTCAAAGATGTTT 59.016 34.615 0.00 0.00 0.00 2.83
915 3055 6.943981 TCAACGAGTTAGTCAAAGATGTTTG 58.056 36.000 8.99 8.99 43.96 2.93
916 3056 5.924475 ACGAGTTAGTCAAAGATGTTTGG 57.076 39.130 14.72 0.00 42.98 3.28
917 3057 5.365619 ACGAGTTAGTCAAAGATGTTTGGT 58.634 37.500 14.72 6.02 42.98 3.67
918 3058 5.236478 ACGAGTTAGTCAAAGATGTTTGGTG 59.764 40.000 14.72 0.00 42.98 4.17
919 3059 5.334105 CGAGTTAGTCAAAGATGTTTGGTGG 60.334 44.000 14.72 0.00 42.98 4.61
920 3060 5.690865 AGTTAGTCAAAGATGTTTGGTGGA 58.309 37.500 14.72 0.00 42.98 4.02
921 3061 6.306987 AGTTAGTCAAAGATGTTTGGTGGAT 58.693 36.000 14.72 0.97 42.98 3.41
922 3062 6.777580 AGTTAGTCAAAGATGTTTGGTGGATT 59.222 34.615 14.72 0.00 42.98 3.01
923 3063 7.942341 AGTTAGTCAAAGATGTTTGGTGGATTA 59.058 33.333 14.72 0.00 42.98 1.75
924 3064 8.739972 GTTAGTCAAAGATGTTTGGTGGATTAT 58.260 33.333 14.72 0.00 42.98 1.28
925 3065 7.161773 AGTCAAAGATGTTTGGTGGATTATG 57.838 36.000 14.72 0.00 42.98 1.90
926 3066 6.721208 AGTCAAAGATGTTTGGTGGATTATGT 59.279 34.615 14.72 0.00 42.98 2.29
927 3067 7.233348 AGTCAAAGATGTTTGGTGGATTATGTT 59.767 33.333 14.72 0.00 42.98 2.71
928 3068 8.519526 GTCAAAGATGTTTGGTGGATTATGTTA 58.480 33.333 14.72 0.00 42.98 2.41
929 3069 9.083422 TCAAAGATGTTTGGTGGATTATGTTAA 57.917 29.630 14.72 0.00 42.98 2.01
930 3070 9.874205 CAAAGATGTTTGGTGGATTATGTTAAT 57.126 29.630 7.43 0.00 39.63 1.40
954 3094 7.661536 TTTAGATCTAGTAAGTGAGCATGGT 57.338 36.000 0.00 0.00 0.00 3.55
955 3095 5.528043 AGATCTAGTAAGTGAGCATGGTG 57.472 43.478 0.00 0.00 0.00 4.17
956 3096 4.343526 AGATCTAGTAAGTGAGCATGGTGG 59.656 45.833 0.00 0.00 0.00 4.61
957 3097 3.441101 TCTAGTAAGTGAGCATGGTGGT 58.559 45.455 0.00 0.00 0.00 4.16
958 3098 3.838317 TCTAGTAAGTGAGCATGGTGGTT 59.162 43.478 0.00 0.00 0.00 3.67
959 3099 5.020795 TCTAGTAAGTGAGCATGGTGGTTA 58.979 41.667 0.00 0.00 0.00 2.85
960 3100 4.844349 AGTAAGTGAGCATGGTGGTTAT 57.156 40.909 0.00 0.00 0.00 1.89
961 3101 5.179452 AGTAAGTGAGCATGGTGGTTATT 57.821 39.130 0.00 0.00 0.00 1.40
962 3102 6.308015 AGTAAGTGAGCATGGTGGTTATTA 57.692 37.500 0.00 0.00 0.00 0.98
963 3103 6.900194 AGTAAGTGAGCATGGTGGTTATTAT 58.100 36.000 0.00 0.00 0.00 1.28
964 3104 8.029782 AGTAAGTGAGCATGGTGGTTATTATA 57.970 34.615 0.00 0.00 0.00 0.98
965 3105 8.660435 AGTAAGTGAGCATGGTGGTTATTATAT 58.340 33.333 0.00 0.00 0.00 0.86
966 3106 9.284968 GTAAGTGAGCATGGTGGTTATTATATT 57.715 33.333 0.00 0.00 0.00 1.28
967 3107 7.750229 AGTGAGCATGGTGGTTATTATATTG 57.250 36.000 0.00 0.00 0.00 1.90
968 3108 7.517320 AGTGAGCATGGTGGTTATTATATTGA 58.483 34.615 0.00 0.00 0.00 2.57
969 3109 8.166061 AGTGAGCATGGTGGTTATTATATTGAT 58.834 33.333 0.00 0.00 0.00 2.57
970 3110 8.239314 GTGAGCATGGTGGTTATTATATTGATG 58.761 37.037 0.00 0.00 0.00 3.07
971 3111 7.394077 TGAGCATGGTGGTTATTATATTGATGG 59.606 37.037 0.00 0.00 0.00 3.51
972 3112 7.469343 AGCATGGTGGTTATTATATTGATGGA 58.531 34.615 0.00 0.00 0.00 3.41
973 3113 8.117956 AGCATGGTGGTTATTATATTGATGGAT 58.882 33.333 0.00 0.00 0.00 3.41
974 3114 9.407380 GCATGGTGGTTATTATATTGATGGATA 57.593 33.333 0.00 0.00 0.00 2.59
985 3125 8.971032 TTATATTGATGGATAAATGGGCCTTT 57.029 30.769 4.53 0.76 0.00 3.11
987 3127 6.923199 ATTGATGGATAAATGGGCCTTTAG 57.077 37.500 4.53 0.00 0.00 1.85
988 3128 5.402054 TGATGGATAAATGGGCCTTTAGT 57.598 39.130 4.53 0.00 0.00 2.24
989 3129 6.523035 TGATGGATAAATGGGCCTTTAGTA 57.477 37.500 4.53 0.00 0.00 1.82
990 3130 6.916909 TGATGGATAAATGGGCCTTTAGTAA 58.083 36.000 4.53 0.00 0.00 2.24
991 3131 7.358263 TGATGGATAAATGGGCCTTTAGTAAA 58.642 34.615 4.53 0.00 0.00 2.01
992 3132 7.286775 TGATGGATAAATGGGCCTTTAGTAAAC 59.713 37.037 4.53 2.62 0.00 2.01
993 3133 6.494952 TGGATAAATGGGCCTTTAGTAAACA 58.505 36.000 4.53 0.00 0.00 2.83
994 3134 7.129425 TGGATAAATGGGCCTTTAGTAAACAT 58.871 34.615 4.53 0.00 0.00 2.71
995 3135 7.069331 TGGATAAATGGGCCTTTAGTAAACATG 59.931 37.037 4.53 0.00 0.00 3.21
996 3136 5.675684 AAATGGGCCTTTAGTAAACATGG 57.324 39.130 4.53 0.00 0.00 3.66
997 3137 4.601406 ATGGGCCTTTAGTAAACATGGA 57.399 40.909 4.53 0.00 0.00 3.41
998 3138 3.963129 TGGGCCTTTAGTAAACATGGAG 58.037 45.455 4.53 0.00 0.00 3.86
999 3139 2.688446 GGGCCTTTAGTAAACATGGAGC 59.312 50.000 0.84 0.00 0.00 4.70
1000 3140 3.352648 GGCCTTTAGTAAACATGGAGCA 58.647 45.455 0.00 0.00 0.00 4.26
1001 3141 3.761752 GGCCTTTAGTAAACATGGAGCAA 59.238 43.478 0.00 0.00 0.00 3.91
1002 3142 4.402474 GGCCTTTAGTAAACATGGAGCAAT 59.598 41.667 0.00 0.00 0.00 3.56
1003 3143 5.105351 GGCCTTTAGTAAACATGGAGCAATT 60.105 40.000 0.00 0.00 0.00 2.32
1004 3144 6.398095 GCCTTTAGTAAACATGGAGCAATTT 58.602 36.000 0.00 0.00 0.00 1.82
1005 3145 6.311200 GCCTTTAGTAAACATGGAGCAATTTG 59.689 38.462 0.00 0.00 0.00 2.32
1006 3146 6.813152 CCTTTAGTAAACATGGAGCAATTTGG 59.187 38.462 0.00 0.00 0.00 3.28
1007 3147 7.309744 CCTTTAGTAAACATGGAGCAATTTGGA 60.310 37.037 0.00 0.00 0.00 3.53
1008 3148 7.716799 TTAGTAAACATGGAGCAATTTGGAT 57.283 32.000 0.00 0.00 0.00 3.41
1009 3149 5.969423 AGTAAACATGGAGCAATTTGGATG 58.031 37.500 0.00 0.00 0.00 3.51
1010 3150 4.895668 AAACATGGAGCAATTTGGATGT 57.104 36.364 0.00 0.00 0.00 3.06
1011 3151 5.999205 AAACATGGAGCAATTTGGATGTA 57.001 34.783 0.00 0.00 0.00 2.29
1012 3152 5.587388 AACATGGAGCAATTTGGATGTAG 57.413 39.130 0.00 0.00 0.00 2.74
1013 3153 4.603131 ACATGGAGCAATTTGGATGTAGT 58.397 39.130 0.00 0.00 0.00 2.73
1014 3154 5.018809 ACATGGAGCAATTTGGATGTAGTT 58.981 37.500 0.00 0.00 0.00 2.24
1015 3155 6.186957 ACATGGAGCAATTTGGATGTAGTTA 58.813 36.000 0.00 0.00 0.00 2.24
1016 3156 6.319658 ACATGGAGCAATTTGGATGTAGTTAG 59.680 38.462 0.00 0.00 0.00 2.34
1017 3157 5.192927 TGGAGCAATTTGGATGTAGTTAGG 58.807 41.667 0.00 0.00 0.00 2.69
1018 3158 4.036852 GGAGCAATTTGGATGTAGTTAGGC 59.963 45.833 0.00 0.00 0.00 3.93
1019 3159 3.627577 AGCAATTTGGATGTAGTTAGGCG 59.372 43.478 0.00 0.00 0.00 5.52
1020 3160 3.625764 GCAATTTGGATGTAGTTAGGCGA 59.374 43.478 0.00 0.00 0.00 5.54
1021 3161 4.275936 GCAATTTGGATGTAGTTAGGCGAT 59.724 41.667 0.00 0.00 0.00 4.58
1022 3162 5.221048 GCAATTTGGATGTAGTTAGGCGATT 60.221 40.000 0.00 0.00 0.00 3.34
1023 3163 6.201517 CAATTTGGATGTAGTTAGGCGATTG 58.798 40.000 0.00 0.00 0.00 2.67
1024 3164 4.481368 TTGGATGTAGTTAGGCGATTGT 57.519 40.909 0.00 0.00 0.00 2.71
1025 3165 3.792401 TGGATGTAGTTAGGCGATTGTG 58.208 45.455 0.00 0.00 0.00 3.33
1026 3166 3.449377 TGGATGTAGTTAGGCGATTGTGA 59.551 43.478 0.00 0.00 0.00 3.58
1027 3167 4.100963 TGGATGTAGTTAGGCGATTGTGAT 59.899 41.667 0.00 0.00 0.00 3.06
1028 3168 4.686554 GGATGTAGTTAGGCGATTGTGATC 59.313 45.833 0.00 0.00 0.00 2.92
1029 3169 5.509840 GGATGTAGTTAGGCGATTGTGATCT 60.510 44.000 0.00 0.00 0.00 2.75
1030 3170 5.339008 TGTAGTTAGGCGATTGTGATCTT 57.661 39.130 0.00 0.00 0.00 2.40
1031 3171 5.109210 TGTAGTTAGGCGATTGTGATCTTG 58.891 41.667 0.00 0.00 0.00 3.02
1032 3172 4.471904 AGTTAGGCGATTGTGATCTTGA 57.528 40.909 0.00 0.00 0.00 3.02
1033 3173 4.832248 AGTTAGGCGATTGTGATCTTGAA 58.168 39.130 0.00 0.00 0.00 2.69
1034 3174 4.631813 AGTTAGGCGATTGTGATCTTGAAC 59.368 41.667 0.00 0.00 0.00 3.18
1035 3175 3.057969 AGGCGATTGTGATCTTGAACA 57.942 42.857 0.00 0.00 0.00 3.18
1036 3176 3.411446 AGGCGATTGTGATCTTGAACAA 58.589 40.909 0.00 0.00 40.36 2.83
1037 3177 3.820467 AGGCGATTGTGATCTTGAACAAA 59.180 39.130 0.98 0.00 39.57 2.83
1038 3178 4.460382 AGGCGATTGTGATCTTGAACAAAT 59.540 37.500 0.98 0.00 39.57 2.32
1039 3179 5.047802 AGGCGATTGTGATCTTGAACAAATT 60.048 36.000 0.98 0.00 39.57 1.82
1040 3180 5.634859 GGCGATTGTGATCTTGAACAAATTT 59.365 36.000 0.98 0.00 39.57 1.82
1041 3181 6.183360 GGCGATTGTGATCTTGAACAAATTTC 60.183 38.462 0.98 0.00 39.57 2.17
1042 3182 6.363088 GCGATTGTGATCTTGAACAAATTTCA 59.637 34.615 0.98 0.00 39.57 2.69
1043 3183 7.617935 GCGATTGTGATCTTGAACAAATTTCAC 60.618 37.037 0.98 12.75 39.57 3.18
1044 3184 7.379262 CGATTGTGATCTTGAACAAATTTCACA 59.621 33.333 15.84 15.84 39.57 3.58
1045 3185 7.990541 TTGTGATCTTGAACAAATTTCACAG 57.009 32.000 17.52 2.45 37.00 3.66
1046 3186 7.099266 TGTGATCTTGAACAAATTTCACAGT 57.901 32.000 15.84 0.00 32.73 3.55
1047 3187 6.974048 TGTGATCTTGAACAAATTTCACAGTG 59.026 34.615 15.84 0.00 32.73 3.66
1048 3188 6.418819 GTGATCTTGAACAAATTTCACAGTGG 59.581 38.462 0.00 0.00 0.00 4.00
1049 3189 6.320926 TGATCTTGAACAAATTTCACAGTGGA 59.679 34.615 0.00 0.00 0.00 4.02
1050 3190 6.713762 TCTTGAACAAATTTCACAGTGGAT 57.286 33.333 0.00 0.00 0.00 3.41
1051 3191 7.111247 TCTTGAACAAATTTCACAGTGGATT 57.889 32.000 0.00 0.00 0.00 3.01
1052 3192 8.231692 TCTTGAACAAATTTCACAGTGGATTA 57.768 30.769 0.00 0.00 0.00 1.75
1053 3193 8.134895 TCTTGAACAAATTTCACAGTGGATTAC 58.865 33.333 0.00 0.00 0.00 1.89
1054 3194 6.434596 TGAACAAATTTCACAGTGGATTACG 58.565 36.000 0.00 0.83 0.00 3.18
1055 3195 6.261158 TGAACAAATTTCACAGTGGATTACGA 59.739 34.615 0.00 0.00 0.00 3.43
1056 3196 6.627395 ACAAATTTCACAGTGGATTACGAA 57.373 33.333 0.00 0.00 0.00 3.85
1057 3197 7.033530 ACAAATTTCACAGTGGATTACGAAA 57.966 32.000 0.00 0.00 0.00 3.46
1058 3198 7.657336 ACAAATTTCACAGTGGATTACGAAAT 58.343 30.769 0.00 0.00 35.25 2.17
1059 3199 8.141268 ACAAATTTCACAGTGGATTACGAAATT 58.859 29.630 0.00 0.00 42.05 1.82
1060 3200 8.977505 CAAATTTCACAGTGGATTACGAAATTT 58.022 29.630 12.46 12.46 46.20 1.82
1061 3201 9.541143 AAATTTCACAGTGGATTACGAAATTTT 57.459 25.926 12.46 0.44 44.45 1.82
1062 3202 8.742554 ATTTCACAGTGGATTACGAAATTTTC 57.257 30.769 0.00 0.00 30.93 2.29
1063 3203 6.869315 TCACAGTGGATTACGAAATTTTCA 57.131 33.333 9.66 0.00 0.00 2.69
1064 3204 7.265647 TCACAGTGGATTACGAAATTTTCAA 57.734 32.000 9.66 0.00 0.00 2.69
1065 3205 7.881142 TCACAGTGGATTACGAAATTTTCAAT 58.119 30.769 9.66 2.76 0.00 2.57
1066 3206 9.004717 TCACAGTGGATTACGAAATTTTCAATA 57.995 29.630 9.66 0.00 0.00 1.90
1067 3207 9.277565 CACAGTGGATTACGAAATTTTCAATAG 57.722 33.333 9.66 0.00 0.00 1.73
1068 3208 9.226606 ACAGTGGATTACGAAATTTTCAATAGA 57.773 29.630 9.66 0.00 0.00 1.98
1094 3234 9.838339 ATTTAGTTAGTAGATTGTGATCTTGGG 57.162 33.333 0.00 0.00 42.55 4.12
1095 3235 8.603898 TTAGTTAGTAGATTGTGATCTTGGGA 57.396 34.615 0.00 0.00 42.55 4.37
1096 3236 7.496346 AGTTAGTAGATTGTGATCTTGGGAA 57.504 36.000 0.00 0.00 42.55 3.97
1097 3237 7.560368 AGTTAGTAGATTGTGATCTTGGGAAG 58.440 38.462 0.00 0.00 42.55 3.46
1098 3238 7.400339 AGTTAGTAGATTGTGATCTTGGGAAGA 59.600 37.037 0.00 0.00 42.55 2.87
1110 3250 5.246981 TCTTGGGAAGATGTCAAAGATGT 57.753 39.130 0.00 0.00 29.84 3.06
1111 3251 5.634118 TCTTGGGAAGATGTCAAAGATGTT 58.366 37.500 0.00 0.00 29.84 2.71
1112 3252 5.707298 TCTTGGGAAGATGTCAAAGATGTTC 59.293 40.000 0.00 0.00 29.84 3.18
1113 3253 4.002982 TGGGAAGATGTCAAAGATGTTCG 58.997 43.478 0.00 0.00 0.00 3.95
1114 3254 3.375299 GGGAAGATGTCAAAGATGTTCGG 59.625 47.826 0.00 0.00 0.00 4.30
1115 3255 4.003648 GGAAGATGTCAAAGATGTTCGGT 58.996 43.478 0.00 0.00 0.00 4.69
1116 3256 4.142816 GGAAGATGTCAAAGATGTTCGGTG 60.143 45.833 0.00 0.00 0.00 4.94
1117 3257 3.338249 AGATGTCAAAGATGTTCGGTGG 58.662 45.455 0.00 0.00 0.00 4.61
1118 3258 2.920724 TGTCAAAGATGTTCGGTGGA 57.079 45.000 0.00 0.00 0.00 4.02
1119 3259 3.417069 TGTCAAAGATGTTCGGTGGAT 57.583 42.857 0.00 0.00 0.00 3.41
1120 3260 3.750371 TGTCAAAGATGTTCGGTGGATT 58.250 40.909 0.00 0.00 0.00 3.01
1121 3261 4.900684 TGTCAAAGATGTTCGGTGGATTA 58.099 39.130 0.00 0.00 0.00 1.75
1122 3262 5.309638 TGTCAAAGATGTTCGGTGGATTAA 58.690 37.500 0.00 0.00 0.00 1.40
1123 3263 5.943416 TGTCAAAGATGTTCGGTGGATTAAT 59.057 36.000 0.00 0.00 0.00 1.40
1124 3264 6.432783 TGTCAAAGATGTTCGGTGGATTAATT 59.567 34.615 0.00 0.00 0.00 1.40
1125 3265 7.608376 TGTCAAAGATGTTCGGTGGATTAATTA 59.392 33.333 0.00 0.00 0.00 1.40
1126 3266 8.455682 GTCAAAGATGTTCGGTGGATTAATTAA 58.544 33.333 0.00 0.00 0.00 1.40
1127 3267 9.184523 TCAAAGATGTTCGGTGGATTAATTAAT 57.815 29.630 10.51 10.51 0.00 1.40
1128 3268 9.236691 CAAAGATGTTCGGTGGATTAATTAATG 57.763 33.333 15.39 1.20 0.00 1.90
1129 3269 8.519799 AAGATGTTCGGTGGATTAATTAATGT 57.480 30.769 15.39 0.00 0.00 2.71
1130 3270 8.519799 AGATGTTCGGTGGATTAATTAATGTT 57.480 30.769 15.39 0.00 0.00 2.71
1159 3299 8.034804 ACAATTTGGATTTAGTTAGGTGATTGC 58.965 33.333 0.78 0.00 0.00 3.56
1160 3300 7.716799 ATTTGGATTTAGTTAGGTGATTGCA 57.283 32.000 0.00 0.00 0.00 4.08
1163 3303 8.815565 TTGGATTTAGTTAGGTGATTGCAATA 57.184 30.769 12.97 0.00 0.00 1.90
1166 3306 9.683069 GGATTTAGTTAGGTGATTGCAATATTG 57.317 33.333 12.97 11.27 0.00 1.90
1171 3311 6.663093 AGTTAGGTGATTGCAATATTGAACCA 59.337 34.615 19.73 6.62 0.00 3.67
1177 3317 8.177013 GGTGATTGCAATATTGAACCAAATTTC 58.823 33.333 19.73 8.86 0.00 2.17
1179 3319 9.153721 TGATTGCAATATTGAACCAAATTTCTC 57.846 29.630 19.73 8.26 0.00 2.87
1185 3326 7.781324 ATATTGAACCAAATTTCTCTGTGGT 57.219 32.000 0.00 0.00 46.38 4.16
1193 3334 7.004086 ACCAAATTTCTCTGTGGTTTATGAGA 58.996 34.615 0.00 0.00 41.68 3.27
1230 4343 5.808366 AGTTAGGTGATTGTGTCTTGAGA 57.192 39.130 0.00 0.00 0.00 3.27
1231 4344 6.365970 AGTTAGGTGATTGTGTCTTGAGAT 57.634 37.500 0.00 0.00 0.00 2.75
1236 4349 6.950842 AGGTGATTGTGTCTTGAGATGATAA 58.049 36.000 0.00 0.00 0.00 1.75
1239 4352 7.496920 GGTGATTGTGTCTTGAGATGATAATCA 59.503 37.037 0.00 0.00 31.23 2.57
1269 4667 8.292444 TGTTTGGTGGATTATGAGATTTTAGG 57.708 34.615 0.00 0.00 0.00 2.69
1271 4669 8.406297 GTTTGGTGGATTATGAGATTTTAGGTC 58.594 37.037 0.00 0.00 0.00 3.85
1273 4671 8.561536 TGGTGGATTATGAGATTTTAGGTCTA 57.438 34.615 0.00 0.00 0.00 2.59
1275 4673 8.652290 GGTGGATTATGAGATTTTAGGTCTAGT 58.348 37.037 0.00 0.00 0.00 2.57
1287 4685 6.656632 TTTAGGTCTAGTAGATGAGCATGG 57.343 41.667 2.51 0.00 33.63 3.66
1290 4688 3.006323 GGTCTAGTAGATGAGCATGGTGG 59.994 52.174 0.00 0.00 0.00 4.61
1294 4692 4.408182 AGTAGATGAGCATGGTGGTTAC 57.592 45.455 0.00 0.00 0.00 2.50
1304 4702 5.376625 AGCATGGTGGTTACTATATTGGTG 58.623 41.667 0.00 0.00 0.00 4.17
1308 4706 5.935945 TGGTGGTTACTATATTGGTGGATG 58.064 41.667 0.00 0.00 0.00 3.51
1313 4711 7.226720 GTGGTTACTATATTGGTGGATGAACAG 59.773 40.741 0.00 0.00 0.00 3.16
1497 7299 9.927668 AATTTGAATTTAGTTAGGTGATTGTGG 57.072 29.630 0.00 0.00 0.00 4.17
1529 10491 9.865321 AACCAAATTTCTCTGTGATTTATGATG 57.135 29.630 0.00 0.00 0.00 3.07
1558 12222 9.886132 TTAGTTGGATTTAGTTAGGAGATTGTC 57.114 33.333 0.00 0.00 0.00 3.18
1563 12227 9.488762 TGGATTTAGTTAGGAGATTGTCTCTTA 57.511 33.333 6.89 1.33 42.95 2.10
1564 12228 9.752961 GGATTTAGTTAGGAGATTGTCTCTTAC 57.247 37.037 6.89 3.67 42.95 2.34
1567 12231 8.571461 TTAGTTAGGAGATTGTCTCTTACGAA 57.429 34.615 6.89 3.69 42.95 3.85
1568 12232 7.463961 AGTTAGGAGATTGTCTCTTACGAAA 57.536 36.000 6.89 0.00 42.95 3.46
1772 15121 2.492449 TTCCTCGAGGAGCTTGTGCG 62.492 60.000 31.81 2.94 46.36 5.34
1909 15258 4.020617 CCGGCACAGGAGGAGCAA 62.021 66.667 0.00 0.00 0.00 3.91
1952 15302 2.359975 GTTTGCCTCCACCTCCGG 60.360 66.667 0.00 0.00 0.00 5.14
2060 15419 7.094118 CCAGGTAGTTAGCTTATCTATGGACTC 60.094 44.444 0.00 0.00 30.45 3.36
2061 15420 6.949463 AGGTAGTTAGCTTATCTATGGACTCC 59.051 42.308 0.00 0.00 0.00 3.85
2062 15421 6.153170 GGTAGTTAGCTTATCTATGGACTCCC 59.847 46.154 0.00 0.00 0.00 4.30
2063 15422 5.088026 AGTTAGCTTATCTATGGACTCCCC 58.912 45.833 0.00 0.00 0.00 4.81
2064 15423 2.530701 AGCTTATCTATGGACTCCCCG 58.469 52.381 0.00 0.00 37.93 5.73
2065 15424 1.066787 GCTTATCTATGGACTCCCCGC 60.067 57.143 0.00 0.00 37.93 6.13
2066 15425 2.248248 CTTATCTATGGACTCCCCGCA 58.752 52.381 0.00 0.00 37.93 5.69
2067 15426 2.391926 TATCTATGGACTCCCCGCAA 57.608 50.000 0.00 0.00 37.93 4.85
2068 15427 1.507140 ATCTATGGACTCCCCGCAAA 58.493 50.000 0.00 0.00 37.93 3.68
2069 15428 1.281419 TCTATGGACTCCCCGCAAAA 58.719 50.000 0.00 0.00 37.93 2.44
2070 15429 1.631388 TCTATGGACTCCCCGCAAAAA 59.369 47.619 0.00 0.00 37.93 1.94
2171 15536 3.366374 GGTGCTTTAGCTTCAATGACCAC 60.366 47.826 0.00 0.00 42.66 4.16
2247 15612 6.216662 TGGTATGGAGAAGTTTTCTTATGGGA 59.783 38.462 0.00 0.00 40.87 4.37
2378 15753 2.954989 TGAATCTGAGATCTGGACCTCG 59.045 50.000 0.00 0.00 32.30 4.63
2384 15759 2.025793 TGAGATCTGGACCTCGAGTTCT 60.026 50.000 12.31 1.89 34.75 3.01
2423 15798 1.202582 GCAGTCGCAAGGAAGAGTAGA 59.797 52.381 0.00 0.00 38.36 2.59
2497 15872 0.896923 TTTCAGGATTGCCATGGTGC 59.103 50.000 14.67 0.00 36.29 5.01
2813 17245 5.692115 TGAAGTATGCCTAATCTTGGACA 57.308 39.130 0.00 0.00 0.00 4.02
2823 17255 7.059788 TGCCTAATCTTGGACAGCATTTATTA 58.940 34.615 0.00 0.00 0.00 0.98
2967 17416 1.599071 CGGTCTTGATATTGCGCACAT 59.401 47.619 11.12 6.47 0.00 3.21
3668 19996 4.759183 TGCAACAAGATACAGTTGTATGCA 59.241 37.500 9.38 9.93 45.16 3.96
3827 20238 3.362399 CTGCCAGGTCTGCGTCGAT 62.362 63.158 0.00 0.00 0.00 3.59
3945 20358 9.186837 CCCTGTTATCTTCTACTACAAGAGTTA 57.813 37.037 0.00 0.00 39.81 2.24
4169 20675 7.976135 AGTGGCATCTCTGAATTTATCATAC 57.024 36.000 0.00 0.00 37.44 2.39
4173 20679 7.386025 TGGCATCTCTGAATTTATCATACGAAG 59.614 37.037 0.00 0.00 37.44 3.79
4222 20728 2.034687 CTGCTGTGTGGGAAGGGG 59.965 66.667 0.00 0.00 0.00 4.79
4292 20859 2.104963 AGGTCTTTTATCGCTCCATCCC 59.895 50.000 0.00 0.00 0.00 3.85
4408 20975 4.864704 TGGTTAAGAGCAATTTCCAACC 57.135 40.909 0.00 0.00 35.10 3.77
4453 21021 5.669447 ACTGGTTAAGAGGAATCCATCTCAT 59.331 40.000 0.61 0.00 32.76 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.176527 CAATGACACCAAGCCGGATT 58.823 50.000 5.05 0.00 38.63 3.01
180 182 3.362040 CCACCAATGGGAGCAAGAA 57.638 52.632 3.55 0.00 43.04 2.52
310 2446 0.399949 TTGTGTCCACCTCCACTCCT 60.400 55.000 0.00 0.00 32.76 3.69
582 2721 6.333416 CGAACATCTTTGACTATCTCCTCAA 58.667 40.000 0.00 0.00 0.00 3.02
655 2794 5.756195 TCACAGAGAAATTTGGTTCAGTG 57.244 39.130 0.00 4.55 32.73 3.66
657 2796 9.350357 CATAAATCACAGAGAAATTTGGTTCAG 57.650 33.333 0.00 0.00 0.00 3.02
812 2952 9.103861 TGGTTGAAAATTGTTCCAAACTAAATC 57.896 29.630 0.00 0.00 0.00 2.17
814 2954 8.848474 TTGGTTGAAAATTGTTCCAAACTAAA 57.152 26.923 0.00 0.00 33.00 1.85
817 2957 7.936496 ATTTGGTTGAAAATTGTTCCAAACT 57.064 28.000 12.55 4.38 44.09 2.66
818 2958 8.239998 TGAATTTGGTTGAAAATTGTTCCAAAC 58.760 29.630 12.55 4.12 44.09 2.93
819 2959 8.239998 GTGAATTTGGTTGAAAATTGTTCCAAA 58.760 29.630 12.63 12.63 44.92 3.28
824 2964 5.877564 ACCGTGAATTTGGTTGAAAATTGTT 59.122 32.000 0.00 0.00 39.31 2.83
825 2965 5.293079 CACCGTGAATTTGGTTGAAAATTGT 59.707 36.000 0.00 0.00 39.31 2.71
826 2966 5.277250 CCACCGTGAATTTGGTTGAAAATTG 60.277 40.000 0.00 0.00 39.31 2.32
827 2967 4.813697 CCACCGTGAATTTGGTTGAAAATT 59.186 37.500 0.00 0.00 41.34 1.82
828 2968 4.100189 TCCACCGTGAATTTGGTTGAAAAT 59.900 37.500 0.00 0.00 35.96 1.82
829 2969 3.447586 TCCACCGTGAATTTGGTTGAAAA 59.552 39.130 0.00 0.00 35.96 2.29
830 2970 3.024547 TCCACCGTGAATTTGGTTGAAA 58.975 40.909 0.00 0.00 35.96 2.69
831 2971 2.656002 TCCACCGTGAATTTGGTTGAA 58.344 42.857 0.00 0.00 35.96 2.69
832 2972 2.350057 TCCACCGTGAATTTGGTTGA 57.650 45.000 0.00 0.00 35.96 3.18
833 2973 3.658757 AATCCACCGTGAATTTGGTTG 57.341 42.857 0.00 0.00 35.96 3.77
834 2974 4.100189 TCAAAATCCACCGTGAATTTGGTT 59.900 37.500 16.64 0.00 35.96 3.67
835 2975 3.639094 TCAAAATCCACCGTGAATTTGGT 59.361 39.130 16.64 0.00 39.66 3.67
836 2976 4.236935 CTCAAAATCCACCGTGAATTTGG 58.763 43.478 16.64 7.30 0.00 3.28
837 2977 4.236935 CCTCAAAATCCACCGTGAATTTG 58.763 43.478 0.00 8.36 0.00 2.32
838 2978 3.895041 ACCTCAAAATCCACCGTGAATTT 59.105 39.130 0.00 0.00 0.00 1.82
839 2979 3.496331 ACCTCAAAATCCACCGTGAATT 58.504 40.909 0.00 0.00 0.00 2.17
840 2980 3.154827 ACCTCAAAATCCACCGTGAAT 57.845 42.857 0.00 0.00 0.00 2.57
841 2981 2.649531 ACCTCAAAATCCACCGTGAA 57.350 45.000 0.00 0.00 0.00 3.18
842 2982 2.649531 AACCTCAAAATCCACCGTGA 57.350 45.000 0.00 0.00 0.00 4.35
843 2983 3.181480 ACAAAACCTCAAAATCCACCGTG 60.181 43.478 0.00 0.00 0.00 4.94
844 2984 3.028130 ACAAAACCTCAAAATCCACCGT 58.972 40.909 0.00 0.00 0.00 4.83
845 2985 3.726291 ACAAAACCTCAAAATCCACCG 57.274 42.857 0.00 0.00 0.00 4.94
846 2986 4.126437 CCAACAAAACCTCAAAATCCACC 58.874 43.478 0.00 0.00 0.00 4.61
847 2987 5.017294 TCCAACAAAACCTCAAAATCCAC 57.983 39.130 0.00 0.00 0.00 4.02
848 2988 5.885449 ATCCAACAAAACCTCAAAATCCA 57.115 34.783 0.00 0.00 0.00 3.41
849 2989 7.931407 ACTAAATCCAACAAAACCTCAAAATCC 59.069 33.333 0.00 0.00 0.00 3.01
850 2990 8.887036 ACTAAATCCAACAAAACCTCAAAATC 57.113 30.769 0.00 0.00 0.00 2.17
852 2992 9.810545 CTAACTAAATCCAACAAAACCTCAAAA 57.189 29.630 0.00 0.00 0.00 2.44
853 2993 8.417884 CCTAACTAAATCCAACAAAACCTCAAA 58.582 33.333 0.00 0.00 0.00 2.69
854 2994 7.562088 ACCTAACTAAATCCAACAAAACCTCAA 59.438 33.333 0.00 0.00 0.00 3.02
855 2995 7.013846 CACCTAACTAAATCCAACAAAACCTCA 59.986 37.037 0.00 0.00 0.00 3.86
856 2996 7.229907 TCACCTAACTAAATCCAACAAAACCTC 59.770 37.037 0.00 0.00 0.00 3.85
857 2997 7.013942 GTCACCTAACTAAATCCAACAAAACCT 59.986 37.037 0.00 0.00 0.00 3.50
858 2998 7.013942 AGTCACCTAACTAAATCCAACAAAACC 59.986 37.037 0.00 0.00 0.00 3.27
859 2999 7.860872 CAGTCACCTAACTAAATCCAACAAAAC 59.139 37.037 0.00 0.00 0.00 2.43
860 3000 7.558444 ACAGTCACCTAACTAAATCCAACAAAA 59.442 33.333 0.00 0.00 0.00 2.44
861 3001 7.012894 CACAGTCACCTAACTAAATCCAACAAA 59.987 37.037 0.00 0.00 0.00 2.83
862 3002 6.485313 CACAGTCACCTAACTAAATCCAACAA 59.515 38.462 0.00 0.00 0.00 2.83
863 3003 5.995282 CACAGTCACCTAACTAAATCCAACA 59.005 40.000 0.00 0.00 0.00 3.33
864 3004 6.228258 TCACAGTCACCTAACTAAATCCAAC 58.772 40.000 0.00 0.00 0.00 3.77
865 3005 6.428083 TCACAGTCACCTAACTAAATCCAA 57.572 37.500 0.00 0.00 0.00 3.53
866 3006 6.440647 AGATCACAGTCACCTAACTAAATCCA 59.559 38.462 0.00 0.00 0.00 3.41
867 3007 6.879400 AGATCACAGTCACCTAACTAAATCC 58.121 40.000 0.00 0.00 0.00 3.01
868 3008 7.548097 TGAGATCACAGTCACCTAACTAAATC 58.452 38.462 0.00 0.00 0.00 2.17
869 3009 7.482169 TGAGATCACAGTCACCTAACTAAAT 57.518 36.000 0.00 0.00 0.00 1.40
870 3010 6.911250 TGAGATCACAGTCACCTAACTAAA 57.089 37.500 0.00 0.00 0.00 1.85
871 3011 6.569801 CGTTGAGATCACAGTCACCTAACTAA 60.570 42.308 0.00 0.00 0.00 2.24
872 3012 5.106277 CGTTGAGATCACAGTCACCTAACTA 60.106 44.000 0.00 0.00 0.00 2.24
873 3013 4.321304 CGTTGAGATCACAGTCACCTAACT 60.321 45.833 0.00 0.00 0.00 2.24
874 3014 3.921021 CGTTGAGATCACAGTCACCTAAC 59.079 47.826 0.00 0.00 0.00 2.34
875 3015 3.824443 TCGTTGAGATCACAGTCACCTAA 59.176 43.478 0.00 0.00 0.00 2.69
876 3016 3.418047 TCGTTGAGATCACAGTCACCTA 58.582 45.455 0.00 0.00 0.00 3.08
877 3017 2.230025 CTCGTTGAGATCACAGTCACCT 59.770 50.000 0.00 0.00 0.00 4.00
878 3018 2.029828 ACTCGTTGAGATCACAGTCACC 60.030 50.000 0.00 0.00 33.32 4.02
879 3019 3.290308 ACTCGTTGAGATCACAGTCAC 57.710 47.619 0.00 0.00 33.32 3.67
880 3020 4.519350 ACTAACTCGTTGAGATCACAGTCA 59.481 41.667 0.00 0.00 33.32 3.41
881 3021 5.049398 ACTAACTCGTTGAGATCACAGTC 57.951 43.478 0.00 0.00 33.32 3.51
882 3022 4.519350 TGACTAACTCGTTGAGATCACAGT 59.481 41.667 0.00 0.00 33.32 3.55
883 3023 5.048153 TGACTAACTCGTTGAGATCACAG 57.952 43.478 0.00 0.00 33.32 3.66
884 3024 5.447624 TTGACTAACTCGTTGAGATCACA 57.552 39.130 0.00 0.00 33.32 3.58
885 3025 6.150318 TCTTTGACTAACTCGTTGAGATCAC 58.850 40.000 0.00 0.00 33.32 3.06
886 3026 6.327279 TCTTTGACTAACTCGTTGAGATCA 57.673 37.500 0.00 0.00 33.32 2.92
887 3027 6.809196 ACATCTTTGACTAACTCGTTGAGATC 59.191 38.462 0.00 0.00 33.32 2.75
888 3028 6.692486 ACATCTTTGACTAACTCGTTGAGAT 58.308 36.000 0.00 0.00 33.32 2.75
889 3029 6.085555 ACATCTTTGACTAACTCGTTGAGA 57.914 37.500 0.00 0.00 33.32 3.27
890 3030 6.771188 AACATCTTTGACTAACTCGTTGAG 57.229 37.500 0.00 0.00 35.52 3.02
891 3031 6.018262 CCAAACATCTTTGACTAACTCGTTGA 60.018 38.462 0.00 0.00 39.43 3.18
892 3032 6.136071 CCAAACATCTTTGACTAACTCGTTG 58.864 40.000 0.00 0.00 39.43 4.10
893 3033 5.820947 ACCAAACATCTTTGACTAACTCGTT 59.179 36.000 0.00 0.00 39.43 3.85
894 3034 5.236478 CACCAAACATCTTTGACTAACTCGT 59.764 40.000 0.00 0.00 39.43 4.18
895 3035 5.334105 CCACCAAACATCTTTGACTAACTCG 60.334 44.000 0.00 0.00 39.43 4.18
896 3036 5.763204 TCCACCAAACATCTTTGACTAACTC 59.237 40.000 0.00 0.00 39.43 3.01
897 3037 5.690865 TCCACCAAACATCTTTGACTAACT 58.309 37.500 0.00 0.00 39.43 2.24
898 3038 6.575162 ATCCACCAAACATCTTTGACTAAC 57.425 37.500 0.00 0.00 39.43 2.34
899 3039 8.739039 CATAATCCACCAAACATCTTTGACTAA 58.261 33.333 0.00 0.00 39.43 2.24
900 3040 7.888021 ACATAATCCACCAAACATCTTTGACTA 59.112 33.333 0.00 0.00 39.43 2.59
901 3041 6.721208 ACATAATCCACCAAACATCTTTGACT 59.279 34.615 0.00 0.00 39.43 3.41
902 3042 6.924111 ACATAATCCACCAAACATCTTTGAC 58.076 36.000 0.00 0.00 39.43 3.18
903 3043 7.537596 AACATAATCCACCAAACATCTTTGA 57.462 32.000 0.00 0.00 39.43 2.69
904 3044 9.874205 ATTAACATAATCCACCAAACATCTTTG 57.126 29.630 0.00 0.00 37.16 2.77
928 3068 8.709308 ACCATGCTCACTTACTAGATCTAAATT 58.291 33.333 3.57 0.00 0.00 1.82
929 3069 8.147058 CACCATGCTCACTTACTAGATCTAAAT 58.853 37.037 3.57 0.00 0.00 1.40
930 3070 7.417911 CCACCATGCTCACTTACTAGATCTAAA 60.418 40.741 3.57 0.00 0.00 1.85
931 3071 6.040955 CCACCATGCTCACTTACTAGATCTAA 59.959 42.308 3.57 0.00 0.00 2.10
932 3072 5.536538 CCACCATGCTCACTTACTAGATCTA 59.463 44.000 1.69 1.69 0.00 1.98
933 3073 4.343526 CCACCATGCTCACTTACTAGATCT 59.656 45.833 0.00 0.00 0.00 2.75
934 3074 4.100189 ACCACCATGCTCACTTACTAGATC 59.900 45.833 0.00 0.00 0.00 2.75
935 3075 4.033709 ACCACCATGCTCACTTACTAGAT 58.966 43.478 0.00 0.00 0.00 1.98
936 3076 3.441101 ACCACCATGCTCACTTACTAGA 58.559 45.455 0.00 0.00 0.00 2.43
937 3077 3.895232 ACCACCATGCTCACTTACTAG 57.105 47.619 0.00 0.00 0.00 2.57
938 3078 5.950544 ATAACCACCATGCTCACTTACTA 57.049 39.130 0.00 0.00 0.00 1.82
939 3079 4.844349 ATAACCACCATGCTCACTTACT 57.156 40.909 0.00 0.00 0.00 2.24
940 3080 8.848474 ATATAATAACCACCATGCTCACTTAC 57.152 34.615 0.00 0.00 0.00 2.34
941 3081 9.283768 CAATATAATAACCACCATGCTCACTTA 57.716 33.333 0.00 0.00 0.00 2.24
942 3082 7.998383 TCAATATAATAACCACCATGCTCACTT 59.002 33.333 0.00 0.00 0.00 3.16
943 3083 7.517320 TCAATATAATAACCACCATGCTCACT 58.483 34.615 0.00 0.00 0.00 3.41
944 3084 7.744087 TCAATATAATAACCACCATGCTCAC 57.256 36.000 0.00 0.00 0.00 3.51
945 3085 7.394077 CCATCAATATAATAACCACCATGCTCA 59.606 37.037 0.00 0.00 0.00 4.26
946 3086 7.611467 TCCATCAATATAATAACCACCATGCTC 59.389 37.037 0.00 0.00 0.00 4.26
947 3087 7.469343 TCCATCAATATAATAACCACCATGCT 58.531 34.615 0.00 0.00 0.00 3.79
948 3088 7.701539 TCCATCAATATAATAACCACCATGC 57.298 36.000 0.00 0.00 0.00 4.06
959 3099 9.564961 AAAGGCCCATTTATCCATCAATATAAT 57.435 29.630 0.00 0.00 0.00 1.28
960 3100 8.971032 AAAGGCCCATTTATCCATCAATATAA 57.029 30.769 0.00 0.00 0.00 0.98
961 3101 9.699410 CTAAAGGCCCATTTATCCATCAATATA 57.301 33.333 0.00 0.00 0.00 0.86
962 3102 8.179487 ACTAAAGGCCCATTTATCCATCAATAT 58.821 33.333 0.00 0.00 0.00 1.28
963 3103 7.534852 ACTAAAGGCCCATTTATCCATCAATA 58.465 34.615 0.00 0.00 0.00 1.90
964 3104 6.384603 ACTAAAGGCCCATTTATCCATCAAT 58.615 36.000 0.00 0.00 0.00 2.57
965 3105 5.776358 ACTAAAGGCCCATTTATCCATCAA 58.224 37.500 0.00 0.00 0.00 2.57
966 3106 5.402054 ACTAAAGGCCCATTTATCCATCA 57.598 39.130 0.00 0.00 0.00 3.07
967 3107 7.286775 TGTTTACTAAAGGCCCATTTATCCATC 59.713 37.037 0.00 0.00 0.00 3.51
968 3108 7.129425 TGTTTACTAAAGGCCCATTTATCCAT 58.871 34.615 0.00 0.00 0.00 3.41
969 3109 6.494952 TGTTTACTAAAGGCCCATTTATCCA 58.505 36.000 0.00 0.00 0.00 3.41
970 3110 7.433680 CATGTTTACTAAAGGCCCATTTATCC 58.566 38.462 0.00 0.00 0.00 2.59
971 3111 7.286775 TCCATGTTTACTAAAGGCCCATTTATC 59.713 37.037 0.00 0.00 0.00 1.75
972 3112 7.129425 TCCATGTTTACTAAAGGCCCATTTAT 58.871 34.615 0.00 0.00 0.00 1.40
973 3113 6.494952 TCCATGTTTACTAAAGGCCCATTTA 58.505 36.000 0.00 0.00 0.00 1.40
974 3114 5.337788 TCCATGTTTACTAAAGGCCCATTT 58.662 37.500 0.00 0.00 0.00 2.32
975 3115 4.941713 TCCATGTTTACTAAAGGCCCATT 58.058 39.130 0.00 0.00 0.00 3.16
976 3116 4.536765 CTCCATGTTTACTAAAGGCCCAT 58.463 43.478 0.00 0.00 0.00 4.00
977 3117 3.876156 GCTCCATGTTTACTAAAGGCCCA 60.876 47.826 0.00 0.00 0.00 5.36
978 3118 2.688446 GCTCCATGTTTACTAAAGGCCC 59.312 50.000 0.00 0.00 0.00 5.80
979 3119 3.352648 TGCTCCATGTTTACTAAAGGCC 58.647 45.455 0.00 0.00 0.00 5.19
980 3120 5.582689 ATTGCTCCATGTTTACTAAAGGC 57.417 39.130 0.00 0.00 0.00 4.35
981 3121 6.813152 CCAAATTGCTCCATGTTTACTAAAGG 59.187 38.462 0.00 0.00 0.00 3.11
982 3122 7.601856 TCCAAATTGCTCCATGTTTACTAAAG 58.398 34.615 0.00 0.00 0.00 1.85
983 3123 7.531857 TCCAAATTGCTCCATGTTTACTAAA 57.468 32.000 0.00 0.00 0.00 1.85
984 3124 7.178274 ACATCCAAATTGCTCCATGTTTACTAA 59.822 33.333 0.00 0.00 0.00 2.24
985 3125 6.663093 ACATCCAAATTGCTCCATGTTTACTA 59.337 34.615 0.00 0.00 0.00 1.82
986 3126 5.481473 ACATCCAAATTGCTCCATGTTTACT 59.519 36.000 0.00 0.00 0.00 2.24
987 3127 5.723295 ACATCCAAATTGCTCCATGTTTAC 58.277 37.500 0.00 0.00 0.00 2.01
988 3128 5.999205 ACATCCAAATTGCTCCATGTTTA 57.001 34.783 0.00 0.00 0.00 2.01
989 3129 4.895668 ACATCCAAATTGCTCCATGTTT 57.104 36.364 0.00 0.00 0.00 2.83
990 3130 5.018809 ACTACATCCAAATTGCTCCATGTT 58.981 37.500 0.00 0.00 0.00 2.71
991 3131 4.603131 ACTACATCCAAATTGCTCCATGT 58.397 39.130 0.00 0.00 0.00 3.21
992 3132 5.587388 AACTACATCCAAATTGCTCCATG 57.413 39.130 0.00 0.00 0.00 3.66
993 3133 5.829924 CCTAACTACATCCAAATTGCTCCAT 59.170 40.000 0.00 0.00 0.00 3.41
994 3134 5.192927 CCTAACTACATCCAAATTGCTCCA 58.807 41.667 0.00 0.00 0.00 3.86
995 3135 4.036852 GCCTAACTACATCCAAATTGCTCC 59.963 45.833 0.00 0.00 0.00 4.70
996 3136 4.260784 CGCCTAACTACATCCAAATTGCTC 60.261 45.833 0.00 0.00 0.00 4.26
997 3137 3.627577 CGCCTAACTACATCCAAATTGCT 59.372 43.478 0.00 0.00 0.00 3.91
998 3138 3.625764 TCGCCTAACTACATCCAAATTGC 59.374 43.478 0.00 0.00 0.00 3.56
999 3139 6.183360 ACAATCGCCTAACTACATCCAAATTG 60.183 38.462 0.00 0.00 0.00 2.32
1000 3140 5.885912 ACAATCGCCTAACTACATCCAAATT 59.114 36.000 0.00 0.00 0.00 1.82
1001 3141 5.296780 CACAATCGCCTAACTACATCCAAAT 59.703 40.000 0.00 0.00 0.00 2.32
1002 3142 4.634004 CACAATCGCCTAACTACATCCAAA 59.366 41.667 0.00 0.00 0.00 3.28
1003 3143 4.081365 TCACAATCGCCTAACTACATCCAA 60.081 41.667 0.00 0.00 0.00 3.53
1004 3144 3.449377 TCACAATCGCCTAACTACATCCA 59.551 43.478 0.00 0.00 0.00 3.41
1005 3145 4.054780 TCACAATCGCCTAACTACATCC 57.945 45.455 0.00 0.00 0.00 3.51
1006 3146 5.533482 AGATCACAATCGCCTAACTACATC 58.467 41.667 0.00 0.00 36.97 3.06
1007 3147 5.537300 AGATCACAATCGCCTAACTACAT 57.463 39.130 0.00 0.00 36.97 2.29
1008 3148 5.105513 TCAAGATCACAATCGCCTAACTACA 60.106 40.000 0.00 0.00 36.97 2.74
1009 3149 5.348986 TCAAGATCACAATCGCCTAACTAC 58.651 41.667 0.00 0.00 36.97 2.73
1010 3150 5.592104 TCAAGATCACAATCGCCTAACTA 57.408 39.130 0.00 0.00 36.97 2.24
1011 3151 4.471904 TCAAGATCACAATCGCCTAACT 57.528 40.909 0.00 0.00 36.97 2.24
1012 3152 4.391830 TGTTCAAGATCACAATCGCCTAAC 59.608 41.667 0.00 0.00 36.97 2.34
1013 3153 4.574892 TGTTCAAGATCACAATCGCCTAA 58.425 39.130 0.00 0.00 36.97 2.69
1014 3154 4.200838 TGTTCAAGATCACAATCGCCTA 57.799 40.909 0.00 0.00 36.97 3.93
1015 3155 3.057969 TGTTCAAGATCACAATCGCCT 57.942 42.857 0.00 0.00 36.97 5.52
1016 3156 3.829886 TTGTTCAAGATCACAATCGCC 57.170 42.857 0.00 0.00 36.97 5.54
1017 3157 6.363088 TGAAATTTGTTCAAGATCACAATCGC 59.637 34.615 0.00 0.00 36.97 4.58
1018 3158 7.379262 TGTGAAATTTGTTCAAGATCACAATCG 59.621 33.333 18.31 0.00 39.32 3.34
1019 3159 8.578308 TGTGAAATTTGTTCAAGATCACAATC 57.422 30.769 18.31 0.00 39.32 2.67
1020 3160 8.199449 ACTGTGAAATTTGTTCAAGATCACAAT 58.801 29.630 19.69 13.37 40.61 2.71
1021 3161 7.488792 CACTGTGAAATTTGTTCAAGATCACAA 59.511 33.333 19.69 0.00 40.61 3.33
1022 3162 6.974048 CACTGTGAAATTTGTTCAAGATCACA 59.026 34.615 18.89 18.89 39.68 3.58
1023 3163 6.418819 CCACTGTGAAATTTGTTCAAGATCAC 59.581 38.462 9.86 14.46 35.72 3.06
1024 3164 6.320926 TCCACTGTGAAATTTGTTCAAGATCA 59.679 34.615 9.86 0.00 0.00 2.92
1025 3165 6.738114 TCCACTGTGAAATTTGTTCAAGATC 58.262 36.000 9.86 0.00 0.00 2.75
1026 3166 6.713762 TCCACTGTGAAATTTGTTCAAGAT 57.286 33.333 9.86 0.00 0.00 2.40
1027 3167 6.713762 ATCCACTGTGAAATTTGTTCAAGA 57.286 33.333 9.86 0.00 0.00 3.02
1028 3168 7.113404 CGTAATCCACTGTGAAATTTGTTCAAG 59.887 37.037 9.86 0.00 0.00 3.02
1029 3169 6.915300 CGTAATCCACTGTGAAATTTGTTCAA 59.085 34.615 9.86 0.00 0.00 2.69
1030 3170 6.261158 TCGTAATCCACTGTGAAATTTGTTCA 59.739 34.615 9.86 0.00 0.00 3.18
1031 3171 6.664515 TCGTAATCCACTGTGAAATTTGTTC 58.335 36.000 9.86 1.47 0.00 3.18
1032 3172 6.627395 TCGTAATCCACTGTGAAATTTGTT 57.373 33.333 9.86 0.00 0.00 2.83
1033 3173 6.627395 TTCGTAATCCACTGTGAAATTTGT 57.373 33.333 9.86 0.00 0.00 2.83
1034 3174 8.519492 AATTTCGTAATCCACTGTGAAATTTG 57.481 30.769 9.86 5.67 40.94 2.32
1036 3176 9.191995 GAAAATTTCGTAATCCACTGTGAAATT 57.808 29.630 9.86 10.82 43.79 1.82
1037 3177 8.356657 TGAAAATTTCGTAATCCACTGTGAAAT 58.643 29.630 9.86 2.67 37.57 2.17
1038 3178 7.708051 TGAAAATTTCGTAATCCACTGTGAAA 58.292 30.769 9.86 0.19 0.00 2.69
1039 3179 7.265647 TGAAAATTTCGTAATCCACTGTGAA 57.734 32.000 9.86 0.00 0.00 3.18
1040 3180 6.869315 TGAAAATTTCGTAATCCACTGTGA 57.131 33.333 9.86 0.00 0.00 3.58
1041 3181 9.277565 CTATTGAAAATTTCGTAATCCACTGTG 57.722 33.333 0.00 0.00 0.00 3.66
1042 3182 9.226606 TCTATTGAAAATTTCGTAATCCACTGT 57.773 29.630 0.97 0.00 0.00 3.55
1068 3208 9.838339 CCCAAGATCACAATCTACTAACTAAAT 57.162 33.333 0.00 0.00 41.54 1.40
1069 3209 9.042450 TCCCAAGATCACAATCTACTAACTAAA 57.958 33.333 0.00 0.00 41.54 1.85
1070 3210 8.603898 TCCCAAGATCACAATCTACTAACTAA 57.396 34.615 0.00 0.00 41.54 2.24
1071 3211 8.603898 TTCCCAAGATCACAATCTACTAACTA 57.396 34.615 0.00 0.00 41.54 2.24
1072 3212 7.400339 TCTTCCCAAGATCACAATCTACTAACT 59.600 37.037 0.00 0.00 41.54 2.24
1073 3213 7.556844 TCTTCCCAAGATCACAATCTACTAAC 58.443 38.462 0.00 0.00 41.54 2.34
1074 3214 7.733773 TCTTCCCAAGATCACAATCTACTAA 57.266 36.000 0.00 0.00 41.54 2.24
1075 3215 7.345653 ACATCTTCCCAAGATCACAATCTACTA 59.654 37.037 0.00 0.00 46.20 1.82
1076 3216 6.157645 ACATCTTCCCAAGATCACAATCTACT 59.842 38.462 0.00 0.00 46.20 2.57
1077 3217 6.352516 ACATCTTCCCAAGATCACAATCTAC 58.647 40.000 0.00 0.00 46.20 2.59
1078 3218 6.156775 TGACATCTTCCCAAGATCACAATCTA 59.843 38.462 0.00 0.00 46.20 1.98
1079 3219 5.045359 TGACATCTTCCCAAGATCACAATCT 60.045 40.000 0.00 0.00 46.20 2.40
1080 3220 5.188434 TGACATCTTCCCAAGATCACAATC 58.812 41.667 0.00 0.00 46.20 2.67
1081 3221 5.183530 TGACATCTTCCCAAGATCACAAT 57.816 39.130 0.00 0.00 46.20 2.71
1082 3222 4.639078 TGACATCTTCCCAAGATCACAA 57.361 40.909 0.00 0.00 46.20 3.33
1083 3223 4.639078 TTGACATCTTCCCAAGATCACA 57.361 40.909 0.00 0.00 46.20 3.58
1084 3224 5.248640 TCTTTGACATCTTCCCAAGATCAC 58.751 41.667 0.00 0.00 46.20 3.06
1085 3225 5.503634 TCTTTGACATCTTCCCAAGATCA 57.496 39.130 0.00 0.00 46.20 2.92
1086 3226 5.884792 ACATCTTTGACATCTTCCCAAGATC 59.115 40.000 0.00 0.00 46.20 2.75
1088 3228 5.246981 ACATCTTTGACATCTTCCCAAGA 57.753 39.130 0.00 0.00 42.69 3.02
1089 3229 5.391310 CGAACATCTTTGACATCTTCCCAAG 60.391 44.000 0.00 0.00 0.00 3.61
1090 3230 4.455533 CGAACATCTTTGACATCTTCCCAA 59.544 41.667 0.00 0.00 0.00 4.12
1091 3231 4.002982 CGAACATCTTTGACATCTTCCCA 58.997 43.478 0.00 0.00 0.00 4.37
1092 3232 3.375299 CCGAACATCTTTGACATCTTCCC 59.625 47.826 0.00 0.00 0.00 3.97
1093 3233 4.003648 ACCGAACATCTTTGACATCTTCC 58.996 43.478 0.00 0.00 0.00 3.46
1094 3234 4.142816 CCACCGAACATCTTTGACATCTTC 60.143 45.833 0.00 0.00 0.00 2.87
1095 3235 3.753272 CCACCGAACATCTTTGACATCTT 59.247 43.478 0.00 0.00 0.00 2.40
1096 3236 3.007940 TCCACCGAACATCTTTGACATCT 59.992 43.478 0.00 0.00 0.00 2.90
1097 3237 3.334691 TCCACCGAACATCTTTGACATC 58.665 45.455 0.00 0.00 0.00 3.06
1098 3238 3.417069 TCCACCGAACATCTTTGACAT 57.583 42.857 0.00 0.00 0.00 3.06
1099 3239 2.920724 TCCACCGAACATCTTTGACA 57.079 45.000 0.00 0.00 0.00 3.58
1100 3240 5.873179 TTAATCCACCGAACATCTTTGAC 57.127 39.130 0.00 0.00 0.00 3.18
1101 3241 8.568676 TTAATTAATCCACCGAACATCTTTGA 57.431 30.769 0.00 0.00 0.00 2.69
1102 3242 9.236691 CATTAATTAATCCACCGAACATCTTTG 57.763 33.333 7.76 0.00 0.00 2.77
1103 3243 8.966868 ACATTAATTAATCCACCGAACATCTTT 58.033 29.630 7.76 0.00 0.00 2.52
1104 3244 8.519799 ACATTAATTAATCCACCGAACATCTT 57.480 30.769 7.76 0.00 0.00 2.40
1105 3245 8.519799 AACATTAATTAATCCACCGAACATCT 57.480 30.769 7.76 0.00 0.00 2.90
1108 3248 9.843334 GTTTAACATTAATTAATCCACCGAACA 57.157 29.630 7.76 0.00 0.00 3.18
1109 3249 9.843334 TGTTTAACATTAATTAATCCACCGAAC 57.157 29.630 7.76 8.88 0.00 3.95
1159 3299 8.090214 ACCACAGAGAAATTTGGTTCAATATTG 58.910 33.333 9.29 9.29 39.41 1.90
1160 3300 8.193953 ACCACAGAGAAATTTGGTTCAATATT 57.806 30.769 0.00 0.00 39.41 1.28
1169 3309 7.452880 TCTCATAAACCACAGAGAAATTTGG 57.547 36.000 0.00 0.00 34.45 3.28
1177 3317 8.454106 CCAACTAAAATCTCATAAACCACAGAG 58.546 37.037 0.00 0.00 0.00 3.35
1179 3319 8.335532 TCCAACTAAAATCTCATAAACCACAG 57.664 34.615 0.00 0.00 0.00 3.66
1198 3339 7.231467 ACACAATCACCTAACTAAATCCAACT 58.769 34.615 0.00 0.00 0.00 3.16
1217 3358 9.676861 TCTTTGATTATCATCTCAAGACACAAT 57.323 29.630 0.00 0.00 33.25 2.71
1230 4343 7.959658 TCCACCAAACATCTTTGATTATCAT 57.040 32.000 0.00 0.00 39.43 2.45
1231 4344 7.959658 ATCCACCAAACATCTTTGATTATCA 57.040 32.000 0.00 0.00 39.43 2.15
1236 4349 7.835682 TCTCATAATCCACCAAACATCTTTGAT 59.164 33.333 0.00 0.00 39.43 2.57
1239 4352 8.599624 AATCTCATAATCCACCAAACATCTTT 57.400 30.769 0.00 0.00 0.00 2.52
1269 4667 3.639094 ACCACCATGCTCATCTACTAGAC 59.361 47.826 0.00 0.00 0.00 2.59
1271 4669 4.679373 AACCACCATGCTCATCTACTAG 57.321 45.455 0.00 0.00 0.00 2.57
1273 4671 4.033709 AGTAACCACCATGCTCATCTACT 58.966 43.478 0.00 0.00 0.00 2.57
1275 4673 8.314021 CAATATAGTAACCACCATGCTCATCTA 58.686 37.037 0.00 0.00 0.00 1.98
1277 4675 6.372659 CCAATATAGTAACCACCATGCTCATC 59.627 42.308 0.00 0.00 0.00 2.92
1287 4685 7.051623 TGTTCATCCACCAATATAGTAACCAC 58.948 38.462 0.00 0.00 0.00 4.16
1326 4724 9.203421 CCTAACTAAATCCAAATTGTTCCAAAC 57.797 33.333 0.00 0.00 0.00 2.93
1333 4731 7.093945 ACAATCGCCTAACTAAATCCAAATTGT 60.094 33.333 0.00 0.00 0.00 2.71
1348 4746 3.938963 GGTTCAAGATCACAATCGCCTAA 59.061 43.478 0.00 0.00 36.97 2.69
1349 4747 3.055458 TGGTTCAAGATCACAATCGCCTA 60.055 43.478 0.00 0.00 36.97 3.93
1399 5000 9.553064 AGATCACAATCAACTAACTAATCCATC 57.447 33.333 0.00 0.00 34.07 3.51
1474 6206 9.747898 ATACCACAATCACCTAACTAAATTCAA 57.252 29.630 0.00 0.00 0.00 2.69
1477 6209 9.747898 TCAATACCACAATCACCTAACTAAATT 57.252 29.630 0.00 0.00 0.00 1.82
1497 7299 9.696917 AAATCACAGAGAAATTTGGTTCAATAC 57.303 29.630 0.00 0.00 0.00 1.89
1563 12227 7.138736 CACCAAACATCTTTGACTATTTTCGT 58.861 34.615 0.00 0.00 39.43 3.85
1564 12228 6.582295 CCACCAAACATCTTTGACTATTTTCG 59.418 38.462 0.00 0.00 39.43 3.46
1567 12231 7.781324 ATCCACCAAACATCTTTGACTATTT 57.219 32.000 0.00 0.00 39.43 1.40
1568 12232 7.781324 AATCCACCAAACATCTTTGACTATT 57.219 32.000 0.00 0.00 39.43 1.73
1721 15070 3.059597 CGCGGCCAAACTAAATCTCATAG 60.060 47.826 2.24 0.00 0.00 2.23
1952 15302 0.907230 AGTGAGAGCAGGGGGAAGAC 60.907 60.000 0.00 0.00 0.00 3.01
2072 15431 7.862675 AGGTGTAGTCCATAGATAAGCTTTTT 58.137 34.615 3.20 0.00 0.00 1.94
2073 15432 7.439108 AGGTGTAGTCCATAGATAAGCTTTT 57.561 36.000 3.20 0.00 0.00 2.27
2074 15433 7.563924 TGTAGGTGTAGTCCATAGATAAGCTTT 59.436 37.037 3.20 0.00 0.00 3.51
2075 15434 7.067421 TGTAGGTGTAGTCCATAGATAAGCTT 58.933 38.462 3.48 3.48 0.00 3.74
2076 15435 6.611785 TGTAGGTGTAGTCCATAGATAAGCT 58.388 40.000 0.00 0.00 0.00 3.74
2077 15436 6.896021 TGTAGGTGTAGTCCATAGATAAGC 57.104 41.667 0.00 0.00 0.00 3.09
2078 15437 9.698309 CAAATGTAGGTGTAGTCCATAGATAAG 57.302 37.037 0.00 0.00 0.00 1.73
2079 15438 9.429109 TCAAATGTAGGTGTAGTCCATAGATAA 57.571 33.333 0.00 0.00 0.00 1.75
2080 15439 9.601810 ATCAAATGTAGGTGTAGTCCATAGATA 57.398 33.333 0.00 0.00 0.00 1.98
2081 15440 7.914427 TCAAATGTAGGTGTAGTCCATAGAT 57.086 36.000 0.00 0.00 0.00 1.98
2082 15441 7.344612 ACATCAAATGTAGGTGTAGTCCATAGA 59.655 37.037 0.00 0.00 42.78 1.98
2260 15625 6.546034 GGAGCCCTAATAGTTCTGCATAAAAA 59.454 38.462 0.00 0.00 0.00 1.94
2378 15753 7.076983 CAGATGAAAAGAAAAGCAGAGAACTC 58.923 38.462 0.00 0.00 0.00 3.01
2423 15798 1.963985 ACCCTCTCTGCCTGATCTTT 58.036 50.000 0.00 0.00 0.00 2.52
2773 16159 1.980765 TCAAGTCCATCAGTGAGCCTT 59.019 47.619 0.00 0.00 0.00 4.35
2813 17245 5.538433 ACACCAACAACAGGTAATAAATGCT 59.462 36.000 0.00 0.00 37.23 3.79
2823 17255 2.802719 AGAAACACACCAACAACAGGT 58.197 42.857 0.00 0.00 40.85 4.00
2899 17336 0.318762 AGACTGAAGCGGGTCTCAAC 59.681 55.000 0.00 0.00 38.25 3.18
2967 17416 2.574006 AGCCAGCAATCTCTTGTCAA 57.426 45.000 0.00 0.00 34.69 3.18
3945 20358 4.870426 CAGCCAAGTAGTACAAATCGACAT 59.130 41.667 2.52 0.00 0.00 3.06
4169 20675 5.521735 AGCAAGCTCATAAAGTCATACTTCG 59.478 40.000 0.00 0.00 37.47 3.79
4173 20679 5.731686 GCCAAGCAAGCTCATAAAGTCATAC 60.732 44.000 0.00 0.00 0.00 2.39
4222 20728 6.936900 TCAATATAGCTCTGGTAAAAGGATGC 59.063 38.462 0.00 0.00 0.00 3.91
4292 20859 4.444022 CCCCACTGGACTCAGATAAATCAG 60.444 50.000 0.00 0.00 43.49 2.90
4379 20946 7.494298 TGGAAATTGCTCTTAACCAAAACTTTC 59.506 33.333 0.00 0.00 0.00 2.62
4408 20975 6.150140 CCAGTGAAGTAAATTTTCTCTCTGGG 59.850 42.308 22.29 10.89 36.39 4.45
4453 21021 3.951775 AAGGCACAACACAAGAAAACA 57.048 38.095 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.