Multiple sequence alignment - TraesCS5D01G434800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G434800 chr5D 100.000 5578 0 0 1 5578 490036598 490031021 0.000000e+00 10301
1 TraesCS5D01G434800 chr5D 83.857 446 64 5 1384 1825 489905900 489906341 8.640000e-113 418
2 TraesCS5D01G434800 chr5B 95.513 4123 120 31 533 4630 604164900 604160818 0.000000e+00 6529
3 TraesCS5D01G434800 chr5B 83.964 449 58 10 1384 1825 604065331 604065772 8.640000e-113 418
4 TraesCS5D01G434800 chr5A 95.519 2053 68 10 2591 4630 611651620 611649579 0.000000e+00 3260
5 TraesCS5D01G434800 chr5A 93.085 2097 68 20 519 2593 611653743 611651702 0.000000e+00 2998
6 TraesCS5D01G434800 chr5A 95.478 951 41 2 4628 5578 209727505 209728453 0.000000e+00 1517
7 TraesCS5D01G434800 chr5A 84.187 449 57 10 1384 1825 611564635 611565076 1.860000e-114 424
8 TraesCS5D01G434800 chr4D 94.820 946 47 2 4634 5578 92327228 92326284 0.000000e+00 1474
9 TraesCS5D01G434800 chr4D 93.763 946 53 4 4634 5578 130066787 130065847 0.000000e+00 1415
10 TraesCS5D01G434800 chr7D 94.304 948 51 3 4632 5578 568803253 568802308 0.000000e+00 1448
11 TraesCS5D01G434800 chr2D 94.180 945 54 1 4634 5578 382734170 382735113 0.000000e+00 1439
12 TraesCS5D01G434800 chr2D 81.837 479 77 7 1361 1834 564095479 564095006 1.460000e-105 394
13 TraesCS5D01G434800 chr2D 78.841 397 60 16 3234 3610 296851491 296851883 4.320000e-61 246
14 TraesCS5D01G434800 chr6D 93.354 948 61 2 4632 5578 356432947 356433893 0.000000e+00 1400
15 TraesCS5D01G434800 chr3D 93.277 952 56 6 4633 5578 377811617 377810668 0.000000e+00 1397
16 TraesCS5D01G434800 chr3D 74.762 210 32 16 250 443 603231571 603231367 2.160000e-09 75
17 TraesCS5D01G434800 chr1D 92.835 949 58 9 4633 5578 315906321 315907262 0.000000e+00 1367
18 TraesCS5D01G434800 chr1A 92.819 947 63 5 4635 5578 188434889 188435833 0.000000e+00 1367
19 TraesCS5D01G434800 chr2B 81.628 479 78 7 1361 1834 675356165 675355692 6.780000e-104 388
20 TraesCS5D01G434800 chr2B 78.607 402 64 14 3241 3622 364731365 364730966 4.320000e-61 246
21 TraesCS5D01G434800 chr2A 81.628 479 78 7 1361 1834 704776734 704776261 6.780000e-104 388
22 TraesCS5D01G434800 chr2A 78.589 397 61 16 3234 3610 369500911 369501303 2.010000e-59 241
23 TraesCS5D01G434800 chr6A 81.975 405 64 8 1361 1760 617657118 617657518 8.950000e-88 335
24 TraesCS5D01G434800 chr6A 81.295 139 23 3 183 320 143697306 143697170 5.910000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G434800 chr5D 490031021 490036598 5577 True 10301 10301 100.000 1 5578 1 chr5D.!!$R1 5577
1 TraesCS5D01G434800 chr5B 604160818 604164900 4082 True 6529 6529 95.513 533 4630 1 chr5B.!!$R1 4097
2 TraesCS5D01G434800 chr5A 611649579 611653743 4164 True 3129 3260 94.302 519 4630 2 chr5A.!!$R1 4111
3 TraesCS5D01G434800 chr5A 209727505 209728453 948 False 1517 1517 95.478 4628 5578 1 chr5A.!!$F1 950
4 TraesCS5D01G434800 chr4D 92326284 92327228 944 True 1474 1474 94.820 4634 5578 1 chr4D.!!$R1 944
5 TraesCS5D01G434800 chr4D 130065847 130066787 940 True 1415 1415 93.763 4634 5578 1 chr4D.!!$R2 944
6 TraesCS5D01G434800 chr7D 568802308 568803253 945 True 1448 1448 94.304 4632 5578 1 chr7D.!!$R1 946
7 TraesCS5D01G434800 chr2D 382734170 382735113 943 False 1439 1439 94.180 4634 5578 1 chr2D.!!$F2 944
8 TraesCS5D01G434800 chr6D 356432947 356433893 946 False 1400 1400 93.354 4632 5578 1 chr6D.!!$F1 946
9 TraesCS5D01G434800 chr3D 377810668 377811617 949 True 1397 1397 93.277 4633 5578 1 chr3D.!!$R1 945
10 TraesCS5D01G434800 chr1D 315906321 315907262 941 False 1367 1367 92.835 4633 5578 1 chr1D.!!$F1 945
11 TraesCS5D01G434800 chr1A 188434889 188435833 944 False 1367 1367 92.819 4635 5578 1 chr1A.!!$F1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.035317 AGCACGAGCATGAAGTCCAA 59.965 50.000 7.77 0.0 45.49 3.53 F
441 442 0.040204 CAATCCCAAAGCCTCCAGGT 59.960 55.000 0.00 0.0 37.57 4.00 F
472 473 0.108138 GATGAGGAGTCCACCGTTGG 60.108 60.000 12.86 0.0 45.56 3.77 F
2275 2293 0.038892 CTGCACAACTGCCATTGGAC 60.039 55.000 6.95 0.0 43.51 4.02 F
2277 2295 0.388659 GCACAACTGCCATTGGACAA 59.611 50.000 6.95 0.0 37.45 3.18 F
2283 2301 1.133823 ACTGCCATTGGACAACTGACA 60.134 47.619 6.95 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 1863 0.436913 CACAGCGTTGCATTGCATTG 59.563 50.000 12.95 9.08 38.76 2.82 R
2240 2258 0.598065 GCAGTGAAAACCCAGCGAAT 59.402 50.000 0.00 0.00 0.00 3.34 R
2370 2388 1.888512 TCAGGCACTTCAAAATGCTCC 59.111 47.619 0.00 0.00 41.74 4.70 R
3878 3994 0.749649 CTGGAGTAGCCACTGCCTAG 59.250 60.000 0.71 0.00 43.33 3.02 R
4021 4145 3.135712 TCTGAAAACACAGTAAGCCTCCA 59.864 43.478 0.00 0.00 38.79 3.86 R
4793 4921 8.669243 CCTTCTTTCATTCCTAGTTGTACATTC 58.331 37.037 0.00 0.00 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.843308 TTTTCATGGATAGAAGGGAATGAAAT 57.157 30.769 8.86 0.00 41.24 2.17
26 27 7.828508 TTCATGGATAGAAGGGAATGAAATG 57.171 36.000 0.00 0.00 32.64 2.32
27 28 6.309357 TCATGGATAGAAGGGAATGAAATGG 58.691 40.000 0.00 0.00 0.00 3.16
28 29 5.065613 TGGATAGAAGGGAATGAAATGGG 57.934 43.478 0.00 0.00 0.00 4.00
29 30 4.482025 TGGATAGAAGGGAATGAAATGGGT 59.518 41.667 0.00 0.00 0.00 4.51
30 31 5.674496 TGGATAGAAGGGAATGAAATGGGTA 59.326 40.000 0.00 0.00 0.00 3.69
31 32 6.004574 GGATAGAAGGGAATGAAATGGGTAC 58.995 44.000 0.00 0.00 0.00 3.34
32 33 4.946160 AGAAGGGAATGAAATGGGTACA 57.054 40.909 0.00 0.00 0.00 2.90
33 34 5.269554 AGAAGGGAATGAAATGGGTACAA 57.730 39.130 0.00 0.00 0.00 2.41
34 35 5.650283 AGAAGGGAATGAAATGGGTACAAA 58.350 37.500 0.00 0.00 0.00 2.83
35 36 6.081356 AGAAGGGAATGAAATGGGTACAAAA 58.919 36.000 0.00 0.00 0.00 2.44
36 37 6.556874 AGAAGGGAATGAAATGGGTACAAAAA 59.443 34.615 0.00 0.00 0.00 1.94
37 38 6.358974 AGGGAATGAAATGGGTACAAAAAG 57.641 37.500 0.00 0.00 0.00 2.27
38 39 6.081356 AGGGAATGAAATGGGTACAAAAAGA 58.919 36.000 0.00 0.00 0.00 2.52
39 40 6.211384 AGGGAATGAAATGGGTACAAAAAGAG 59.789 38.462 0.00 0.00 0.00 2.85
40 41 6.398095 GGAATGAAATGGGTACAAAAAGAGG 58.602 40.000 0.00 0.00 0.00 3.69
41 42 6.358974 AATGAAATGGGTACAAAAAGAGGG 57.641 37.500 0.00 0.00 0.00 4.30
42 43 4.810345 TGAAATGGGTACAAAAAGAGGGT 58.190 39.130 0.00 0.00 0.00 4.34
43 44 5.954757 TGAAATGGGTACAAAAAGAGGGTA 58.045 37.500 0.00 0.00 0.00 3.69
44 45 5.771165 TGAAATGGGTACAAAAAGAGGGTAC 59.229 40.000 0.00 0.00 37.30 3.34
45 46 5.327737 AATGGGTACAAAAAGAGGGTACA 57.672 39.130 0.00 0.00 39.24 2.90
46 47 4.792513 TGGGTACAAAAAGAGGGTACAA 57.207 40.909 0.00 0.00 39.24 2.41
47 48 4.463070 TGGGTACAAAAAGAGGGTACAAC 58.537 43.478 0.00 0.00 39.24 3.32
48 49 4.079901 TGGGTACAAAAAGAGGGTACAACA 60.080 41.667 0.00 0.00 39.24 3.33
49 50 4.276678 GGGTACAAAAAGAGGGTACAACAC 59.723 45.833 0.00 0.00 39.24 3.32
50 51 4.883006 GGTACAAAAAGAGGGTACAACACA 59.117 41.667 0.00 0.00 39.24 3.72
51 52 5.008316 GGTACAAAAAGAGGGTACAACACAG 59.992 44.000 0.00 0.00 39.24 3.66
52 53 3.951680 ACAAAAAGAGGGTACAACACAGG 59.048 43.478 0.00 0.00 0.00 4.00
53 54 4.204012 CAAAAAGAGGGTACAACACAGGA 58.796 43.478 0.00 0.00 0.00 3.86
54 55 3.487120 AAAGAGGGTACAACACAGGAC 57.513 47.619 0.00 0.00 0.00 3.85
55 56 2.097110 AGAGGGTACAACACAGGACA 57.903 50.000 0.00 0.00 0.00 4.02
56 57 1.692519 AGAGGGTACAACACAGGACAC 59.307 52.381 0.00 0.00 0.00 3.67
57 58 0.391597 AGGGTACAACACAGGACACG 59.608 55.000 0.00 0.00 0.00 4.49
58 59 0.390124 GGGTACAACACAGGACACGA 59.610 55.000 0.00 0.00 0.00 4.35
59 60 1.202557 GGGTACAACACAGGACACGAA 60.203 52.381 0.00 0.00 0.00 3.85
60 61 1.862827 GGTACAACACAGGACACGAAC 59.137 52.381 0.00 0.00 0.00 3.95
61 62 1.519758 GTACAACACAGGACACGAACG 59.480 52.381 0.00 0.00 0.00 3.95
62 63 0.173935 ACAACACAGGACACGAACGA 59.826 50.000 0.14 0.00 0.00 3.85
63 64 1.282817 CAACACAGGACACGAACGAA 58.717 50.000 0.14 0.00 0.00 3.85
64 65 1.661617 CAACACAGGACACGAACGAAA 59.338 47.619 0.14 0.00 0.00 3.46
65 66 1.567504 ACACAGGACACGAACGAAAG 58.432 50.000 0.14 0.00 0.00 2.62
66 67 1.135527 ACACAGGACACGAACGAAAGA 59.864 47.619 0.14 0.00 0.00 2.52
67 68 2.198406 CACAGGACACGAACGAAAGAA 58.802 47.619 0.14 0.00 0.00 2.52
68 69 2.218759 CACAGGACACGAACGAAAGAAG 59.781 50.000 0.14 0.00 0.00 2.85
69 70 1.792949 CAGGACACGAACGAAAGAAGG 59.207 52.381 0.14 0.00 0.00 3.46
70 71 0.511653 GGACACGAACGAAAGAAGGC 59.488 55.000 0.14 0.00 0.00 4.35
71 72 0.161024 GACACGAACGAAAGAAGGCG 59.839 55.000 0.14 0.00 0.00 5.52
72 73 0.529119 ACACGAACGAAAGAAGGCGT 60.529 50.000 0.14 0.00 43.39 5.68
73 74 1.269206 ACACGAACGAAAGAAGGCGTA 60.269 47.619 0.14 0.00 40.23 4.42
74 75 1.788308 CACGAACGAAAGAAGGCGTAA 59.212 47.619 0.14 0.00 40.23 3.18
75 76 2.219216 CACGAACGAAAGAAGGCGTAAA 59.781 45.455 0.14 0.00 40.23 2.01
76 77 2.473984 ACGAACGAAAGAAGGCGTAAAG 59.526 45.455 0.14 0.00 40.23 1.85
77 78 2.727798 CGAACGAAAGAAGGCGTAAAGA 59.272 45.455 0.00 0.00 40.23 2.52
78 79 3.367025 CGAACGAAAGAAGGCGTAAAGAT 59.633 43.478 0.00 0.00 40.23 2.40
79 80 4.638963 GAACGAAAGAAGGCGTAAAGATG 58.361 43.478 0.00 0.00 40.23 2.90
80 81 3.921677 ACGAAAGAAGGCGTAAAGATGA 58.078 40.909 0.00 0.00 39.21 2.92
81 82 4.504858 ACGAAAGAAGGCGTAAAGATGAT 58.495 39.130 0.00 0.00 39.21 2.45
82 83 4.330074 ACGAAAGAAGGCGTAAAGATGATG 59.670 41.667 0.00 0.00 39.21 3.07
83 84 4.592179 GAAAGAAGGCGTAAAGATGATGC 58.408 43.478 0.00 0.00 0.00 3.91
88 89 3.386768 GGCGTAAAGATGATGCCTAGA 57.613 47.619 0.00 0.00 44.32 2.43
89 90 3.321497 GGCGTAAAGATGATGCCTAGAG 58.679 50.000 0.00 0.00 44.32 2.43
90 91 2.734079 GCGTAAAGATGATGCCTAGAGC 59.266 50.000 0.00 0.00 44.14 4.09
99 100 3.713650 GCCTAGAGCACAGGGACA 58.286 61.111 0.00 0.00 42.97 4.02
100 101 1.983224 GCCTAGAGCACAGGGACAA 59.017 57.895 0.00 0.00 42.97 3.18
101 102 0.107945 GCCTAGAGCACAGGGACAAG 60.108 60.000 0.00 0.00 42.97 3.16
102 103 1.561643 CCTAGAGCACAGGGACAAGA 58.438 55.000 0.00 0.00 0.00 3.02
103 104 1.205893 CCTAGAGCACAGGGACAAGAC 59.794 57.143 0.00 0.00 0.00 3.01
104 105 1.895798 CTAGAGCACAGGGACAAGACA 59.104 52.381 0.00 0.00 0.00 3.41
105 106 1.356124 AGAGCACAGGGACAAGACAT 58.644 50.000 0.00 0.00 0.00 3.06
106 107 1.002888 AGAGCACAGGGACAAGACATG 59.997 52.381 0.00 0.00 0.00 3.21
107 108 0.607489 AGCACAGGGACAAGACATGC 60.607 55.000 0.00 0.00 0.00 4.06
108 109 0.607489 GCACAGGGACAAGACATGCT 60.607 55.000 0.00 0.00 0.00 3.79
109 110 1.446907 CACAGGGACAAGACATGCTC 58.553 55.000 0.00 0.00 0.00 4.26
110 111 1.059098 ACAGGGACAAGACATGCTCA 58.941 50.000 0.00 0.00 0.00 4.26
111 112 1.002888 ACAGGGACAAGACATGCTCAG 59.997 52.381 0.00 0.00 0.00 3.35
112 113 1.002888 CAGGGACAAGACATGCTCAGT 59.997 52.381 0.00 0.00 0.00 3.41
113 114 1.277557 AGGGACAAGACATGCTCAGTC 59.722 52.381 0.00 3.82 36.26 3.51
114 115 1.677217 GGGACAAGACATGCTCAGTCC 60.677 57.143 20.77 20.77 44.65 3.85
115 116 1.002430 GGACAAGACATGCTCAGTCCA 59.998 52.381 22.33 0.00 44.71 4.02
116 117 2.550855 GGACAAGACATGCTCAGTCCAA 60.551 50.000 22.33 0.00 44.71 3.53
117 118 3.141398 GACAAGACATGCTCAGTCCAAA 58.859 45.455 0.00 0.00 36.68 3.28
118 119 2.880890 ACAAGACATGCTCAGTCCAAAC 59.119 45.455 0.00 0.00 36.68 2.93
119 120 2.880268 CAAGACATGCTCAGTCCAAACA 59.120 45.455 0.00 0.00 36.68 2.83
120 121 2.775890 AGACATGCTCAGTCCAAACAG 58.224 47.619 0.00 0.00 36.68 3.16
121 122 2.369860 AGACATGCTCAGTCCAAACAGA 59.630 45.455 0.00 0.00 36.68 3.41
122 123 3.141398 GACATGCTCAGTCCAAACAGAA 58.859 45.455 0.00 0.00 0.00 3.02
123 124 3.144506 ACATGCTCAGTCCAAACAGAAG 58.855 45.455 0.00 0.00 0.00 2.85
124 125 3.181451 ACATGCTCAGTCCAAACAGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
125 126 3.777106 TGCTCAGTCCAAACAGAAGAT 57.223 42.857 0.00 0.00 0.00 2.40
126 127 4.890158 TGCTCAGTCCAAACAGAAGATA 57.110 40.909 0.00 0.00 0.00 1.98
127 128 5.426689 TGCTCAGTCCAAACAGAAGATAT 57.573 39.130 0.00 0.00 0.00 1.63
128 129 6.544928 TGCTCAGTCCAAACAGAAGATATA 57.455 37.500 0.00 0.00 0.00 0.86
129 130 6.946340 TGCTCAGTCCAAACAGAAGATATAA 58.054 36.000 0.00 0.00 0.00 0.98
130 131 6.818644 TGCTCAGTCCAAACAGAAGATATAAC 59.181 38.462 0.00 0.00 0.00 1.89
131 132 6.818644 GCTCAGTCCAAACAGAAGATATAACA 59.181 38.462 0.00 0.00 0.00 2.41
132 133 7.201565 GCTCAGTCCAAACAGAAGATATAACAC 60.202 40.741 0.00 0.00 0.00 3.32
133 134 6.811665 TCAGTCCAAACAGAAGATATAACACG 59.188 38.462 0.00 0.00 0.00 4.49
134 135 6.036083 CAGTCCAAACAGAAGATATAACACGG 59.964 42.308 0.00 0.00 0.00 4.94
135 136 4.873827 TCCAAACAGAAGATATAACACGGC 59.126 41.667 0.00 0.00 0.00 5.68
136 137 4.035208 CCAAACAGAAGATATAACACGGCC 59.965 45.833 0.00 0.00 0.00 6.13
137 138 4.481368 AACAGAAGATATAACACGGCCA 57.519 40.909 2.24 0.00 0.00 5.36
138 139 4.481368 ACAGAAGATATAACACGGCCAA 57.519 40.909 2.24 0.00 0.00 4.52
139 140 4.839121 ACAGAAGATATAACACGGCCAAA 58.161 39.130 2.24 0.00 0.00 3.28
140 141 4.634443 ACAGAAGATATAACACGGCCAAAC 59.366 41.667 2.24 0.00 0.00 2.93
141 142 4.035208 CAGAAGATATAACACGGCCAAACC 59.965 45.833 2.24 0.00 0.00 3.27
142 143 2.927028 AGATATAACACGGCCAAACCC 58.073 47.619 2.24 0.00 33.26 4.11
143 144 2.240160 AGATATAACACGGCCAAACCCA 59.760 45.455 2.24 0.00 33.26 4.51
144 145 2.581216 TATAACACGGCCAAACCCAA 57.419 45.000 2.24 0.00 33.26 4.12
145 146 1.705873 ATAACACGGCCAAACCCAAA 58.294 45.000 2.24 0.00 33.26 3.28
146 147 1.033574 TAACACGGCCAAACCCAAAG 58.966 50.000 2.24 0.00 33.26 2.77
147 148 0.973496 AACACGGCCAAACCCAAAGT 60.973 50.000 2.24 0.00 33.26 2.66
148 149 1.362355 CACGGCCAAACCCAAAGTC 59.638 57.895 2.24 0.00 33.26 3.01
149 150 1.076632 ACGGCCAAACCCAAAGTCA 60.077 52.632 2.24 0.00 33.26 3.41
150 151 1.362355 CGGCCAAACCCAAAGTCAC 59.638 57.895 2.24 0.00 33.26 3.67
151 152 1.362355 GGCCAAACCCAAAGTCACG 59.638 57.895 0.00 0.00 0.00 4.35
152 153 1.104577 GGCCAAACCCAAAGTCACGA 61.105 55.000 0.00 0.00 0.00 4.35
153 154 0.958822 GCCAAACCCAAAGTCACGAT 59.041 50.000 0.00 0.00 0.00 3.73
154 155 1.068541 GCCAAACCCAAAGTCACGATC 60.069 52.381 0.00 0.00 0.00 3.69
155 156 2.504367 CCAAACCCAAAGTCACGATCT 58.496 47.619 0.00 0.00 0.00 2.75
156 157 3.670625 CCAAACCCAAAGTCACGATCTA 58.329 45.455 0.00 0.00 0.00 1.98
157 158 3.684788 CCAAACCCAAAGTCACGATCTAG 59.315 47.826 0.00 0.00 0.00 2.43
158 159 4.562757 CCAAACCCAAAGTCACGATCTAGA 60.563 45.833 0.00 0.00 0.00 2.43
159 160 4.457834 AACCCAAAGTCACGATCTAGAG 57.542 45.455 0.00 0.00 0.00 2.43
160 161 2.761208 ACCCAAAGTCACGATCTAGAGG 59.239 50.000 0.00 0.00 0.00 3.69
161 162 2.101582 CCCAAAGTCACGATCTAGAGGG 59.898 54.545 0.00 0.00 0.00 4.30
162 163 2.101582 CCAAAGTCACGATCTAGAGGGG 59.898 54.545 0.00 0.00 0.00 4.79
163 164 1.404843 AAGTCACGATCTAGAGGGGC 58.595 55.000 0.00 0.00 0.00 5.80
164 165 0.820074 AGTCACGATCTAGAGGGGCG 60.820 60.000 0.00 2.23 0.00 6.13
165 166 1.528542 TCACGATCTAGAGGGGCGG 60.529 63.158 0.00 0.00 0.00 6.13
166 167 1.528542 CACGATCTAGAGGGGCGGA 60.529 63.158 0.00 0.00 0.00 5.54
167 168 1.228306 ACGATCTAGAGGGGCGGAG 60.228 63.158 0.00 0.00 0.00 4.63
168 169 1.073373 CGATCTAGAGGGGCGGAGA 59.927 63.158 0.00 0.00 0.00 3.71
169 170 0.958382 CGATCTAGAGGGGCGGAGAG 60.958 65.000 0.00 0.00 0.00 3.20
180 181 2.491621 CGGAGAGCACGAGCATGA 59.508 61.111 7.77 0.00 45.49 3.07
181 182 1.153765 CGGAGAGCACGAGCATGAA 60.154 57.895 7.77 0.00 45.49 2.57
182 183 1.144565 CGGAGAGCACGAGCATGAAG 61.145 60.000 7.77 0.00 45.49 3.02
183 184 0.108424 GGAGAGCACGAGCATGAAGT 60.108 55.000 7.77 0.00 45.49 3.01
184 185 1.276415 GAGAGCACGAGCATGAAGTC 58.724 55.000 7.77 0.00 45.49 3.01
185 186 0.108424 AGAGCACGAGCATGAAGTCC 60.108 55.000 7.77 0.00 45.49 3.85
186 187 0.390340 GAGCACGAGCATGAAGTCCA 60.390 55.000 7.77 0.00 45.49 4.02
187 188 0.035317 AGCACGAGCATGAAGTCCAA 59.965 50.000 7.77 0.00 45.49 3.53
188 189 0.166814 GCACGAGCATGAAGTCCAAC 59.833 55.000 0.00 0.00 41.58 3.77
189 190 1.511850 CACGAGCATGAAGTCCAACA 58.488 50.000 0.00 0.00 0.00 3.33
190 191 2.079158 CACGAGCATGAAGTCCAACAT 58.921 47.619 0.00 0.00 0.00 2.71
191 192 2.094894 CACGAGCATGAAGTCCAACATC 59.905 50.000 0.00 0.00 0.00 3.06
192 193 2.289631 ACGAGCATGAAGTCCAACATCA 60.290 45.455 0.00 0.00 29.93 3.07
193 194 2.094894 CGAGCATGAAGTCCAACATCAC 59.905 50.000 0.00 0.00 27.90 3.06
194 195 2.421424 GAGCATGAAGTCCAACATCACC 59.579 50.000 0.00 0.00 27.90 4.02
195 196 2.161855 GCATGAAGTCCAACATCACCA 58.838 47.619 0.00 0.00 27.90 4.17
196 197 2.557924 GCATGAAGTCCAACATCACCAA 59.442 45.455 0.00 0.00 27.90 3.67
197 198 3.005684 GCATGAAGTCCAACATCACCAAA 59.994 43.478 0.00 0.00 27.90 3.28
198 199 4.501229 GCATGAAGTCCAACATCACCAAAA 60.501 41.667 0.00 0.00 27.90 2.44
199 200 4.647424 TGAAGTCCAACATCACCAAAAC 57.353 40.909 0.00 0.00 0.00 2.43
200 201 3.383185 TGAAGTCCAACATCACCAAAACC 59.617 43.478 0.00 0.00 0.00 3.27
201 202 3.025322 AGTCCAACATCACCAAAACCA 57.975 42.857 0.00 0.00 0.00 3.67
202 203 3.370104 AGTCCAACATCACCAAAACCAA 58.630 40.909 0.00 0.00 0.00 3.67
203 204 3.132111 AGTCCAACATCACCAAAACCAAC 59.868 43.478 0.00 0.00 0.00 3.77
204 205 2.099921 TCCAACATCACCAAAACCAACG 59.900 45.455 0.00 0.00 0.00 4.10
205 206 1.857837 CAACATCACCAAAACCAACGC 59.142 47.619 0.00 0.00 0.00 4.84
206 207 0.387565 ACATCACCAAAACCAACGCC 59.612 50.000 0.00 0.00 0.00 5.68
207 208 0.662970 CATCACCAAAACCAACGCCG 60.663 55.000 0.00 0.00 0.00 6.46
208 209 1.104577 ATCACCAAAACCAACGCCGT 61.105 50.000 0.00 0.00 0.00 5.68
209 210 1.587613 CACCAAAACCAACGCCGTG 60.588 57.895 0.00 0.00 0.00 4.94
210 211 1.749638 ACCAAAACCAACGCCGTGA 60.750 52.632 0.00 0.00 0.00 4.35
211 212 1.104577 ACCAAAACCAACGCCGTGAT 61.105 50.000 0.00 0.00 0.00 3.06
212 213 0.386731 CCAAAACCAACGCCGTGATC 60.387 55.000 0.00 0.00 0.00 2.92
213 214 0.724453 CAAAACCAACGCCGTGATCG 60.724 55.000 0.00 0.00 0.00 3.69
214 215 2.452366 AAAACCAACGCCGTGATCGC 62.452 55.000 0.00 0.00 35.54 4.58
230 231 3.503363 GCCGCGAGCAAGCAAGAT 61.503 61.111 8.23 0.00 42.97 2.40
231 232 2.173669 GCCGCGAGCAAGCAAGATA 61.174 57.895 8.23 0.00 42.97 1.98
232 233 1.930100 CCGCGAGCAAGCAAGATAG 59.070 57.895 8.23 0.00 36.85 2.08
233 234 1.275066 CGCGAGCAAGCAAGATAGC 59.725 57.895 0.00 0.00 36.85 2.97
234 235 1.275066 GCGAGCAAGCAAGATAGCG 59.725 57.895 0.00 0.00 40.15 4.26
235 236 1.424493 GCGAGCAAGCAAGATAGCGT 61.424 55.000 0.00 0.00 40.15 5.07
236 237 0.574454 CGAGCAAGCAAGATAGCGTC 59.426 55.000 0.00 0.00 40.15 5.19
237 238 0.933796 GAGCAAGCAAGATAGCGTCC 59.066 55.000 0.00 0.00 40.15 4.79
238 239 0.539051 AGCAAGCAAGATAGCGTCCT 59.461 50.000 0.00 0.00 40.15 3.85
239 240 0.933796 GCAAGCAAGATAGCGTCCTC 59.066 55.000 0.00 0.00 40.15 3.71
240 241 1.740380 GCAAGCAAGATAGCGTCCTCA 60.740 52.381 0.00 0.00 40.15 3.86
241 242 2.831333 CAAGCAAGATAGCGTCCTCAT 58.169 47.619 0.00 0.00 40.15 2.90
242 243 2.522836 AGCAAGATAGCGTCCTCATG 57.477 50.000 0.00 0.00 40.15 3.07
243 244 2.034878 AGCAAGATAGCGTCCTCATGA 58.965 47.619 0.00 0.00 40.15 3.07
244 245 2.432146 AGCAAGATAGCGTCCTCATGAA 59.568 45.455 0.00 0.00 40.15 2.57
245 246 2.799412 GCAAGATAGCGTCCTCATGAAG 59.201 50.000 0.00 0.00 0.00 3.02
246 247 3.491619 GCAAGATAGCGTCCTCATGAAGA 60.492 47.826 0.00 0.00 0.00 2.87
247 248 4.686972 CAAGATAGCGTCCTCATGAAGAA 58.313 43.478 0.00 0.00 0.00 2.52
248 249 5.111989 CAAGATAGCGTCCTCATGAAGAAA 58.888 41.667 0.00 0.00 0.00 2.52
249 250 5.344743 AGATAGCGTCCTCATGAAGAAAA 57.655 39.130 0.00 0.00 0.00 2.29
250 251 5.734720 AGATAGCGTCCTCATGAAGAAAAA 58.265 37.500 0.00 0.00 0.00 1.94
251 252 5.582665 AGATAGCGTCCTCATGAAGAAAAAC 59.417 40.000 0.00 0.00 0.00 2.43
252 253 2.480419 AGCGTCCTCATGAAGAAAAACG 59.520 45.455 0.00 0.00 0.00 3.60
253 254 2.478894 GCGTCCTCATGAAGAAAAACGA 59.521 45.455 7.29 0.00 31.12 3.85
254 255 3.664537 GCGTCCTCATGAAGAAAAACGAC 60.665 47.826 7.29 0.00 31.12 4.34
255 256 3.421826 CGTCCTCATGAAGAAAAACGACG 60.422 47.826 0.00 0.00 35.27 5.12
256 257 3.493503 GTCCTCATGAAGAAAAACGACGT 59.506 43.478 0.00 0.00 0.00 4.34
257 258 3.739300 TCCTCATGAAGAAAAACGACGTC 59.261 43.478 5.18 5.18 0.00 4.34
258 259 3.493129 CCTCATGAAGAAAAACGACGTCA 59.507 43.478 17.16 0.00 0.00 4.35
259 260 4.152402 CCTCATGAAGAAAAACGACGTCAT 59.848 41.667 17.16 0.00 36.15 3.06
260 261 5.017484 TCATGAAGAAAAACGACGTCATG 57.983 39.130 17.16 14.15 46.23 3.07
262 263 4.446857 TGAAGAAAAACGACGTCATGAC 57.553 40.909 16.21 16.21 0.00 3.06
277 278 1.226575 TGACGTCGTCATCATCCGC 60.227 57.895 23.70 0.00 37.67 5.54
278 279 1.064296 GACGTCGTCATCATCCGCT 59.936 57.895 20.28 0.00 32.09 5.52
279 280 0.930742 GACGTCGTCATCATCCGCTC 60.931 60.000 20.28 0.00 32.09 5.03
280 281 1.658717 CGTCGTCATCATCCGCTCC 60.659 63.158 0.00 0.00 0.00 4.70
281 282 1.658717 GTCGTCATCATCCGCTCCG 60.659 63.158 0.00 0.00 0.00 4.63
298 299 3.951765 GGAGAACCGGACCTAGGG 58.048 66.667 14.81 0.00 0.00 3.53
299 300 1.001376 GGAGAACCGGACCTAGGGT 59.999 63.158 14.81 0.00 39.44 4.34
301 302 1.273759 GAGAACCGGACCTAGGGTTT 58.726 55.000 14.81 0.00 46.16 3.27
302 303 1.627329 GAGAACCGGACCTAGGGTTTT 59.373 52.381 14.81 2.50 46.16 2.43
303 304 1.627329 AGAACCGGACCTAGGGTTTTC 59.373 52.381 14.81 8.07 46.16 2.29
304 305 0.694771 AACCGGACCTAGGGTTTTCC 59.305 55.000 14.81 9.90 43.84 3.13
314 315 4.813346 GGTTTTCCCCGAGCTTGA 57.187 55.556 1.22 0.00 0.00 3.02
315 316 3.030415 GGTTTTCCCCGAGCTTGAA 57.970 52.632 1.22 0.00 0.00 2.69
316 317 0.881796 GGTTTTCCCCGAGCTTGAAG 59.118 55.000 1.22 0.00 0.00 3.02
317 318 1.544759 GGTTTTCCCCGAGCTTGAAGA 60.545 52.381 1.22 0.00 0.00 2.87
318 319 1.807142 GTTTTCCCCGAGCTTGAAGAG 59.193 52.381 1.22 0.00 0.00 2.85
319 320 0.324943 TTTCCCCGAGCTTGAAGAGG 59.675 55.000 1.22 0.00 0.00 3.69
320 321 0.544357 TTCCCCGAGCTTGAAGAGGA 60.544 55.000 1.22 0.18 0.00 3.71
321 322 0.544357 TCCCCGAGCTTGAAGAGGAA 60.544 55.000 1.22 0.00 0.00 3.36
322 323 0.391793 CCCCGAGCTTGAAGAGGAAC 60.392 60.000 1.22 0.00 0.00 3.62
323 324 0.321671 CCCGAGCTTGAAGAGGAACA 59.678 55.000 1.22 0.00 0.00 3.18
324 325 1.433534 CCGAGCTTGAAGAGGAACAC 58.566 55.000 1.22 0.00 0.00 3.32
325 326 1.270305 CCGAGCTTGAAGAGGAACACA 60.270 52.381 1.22 0.00 0.00 3.72
326 327 2.613977 CCGAGCTTGAAGAGGAACACAT 60.614 50.000 1.22 0.00 0.00 3.21
327 328 2.414481 CGAGCTTGAAGAGGAACACATG 59.586 50.000 0.00 0.00 0.00 3.21
328 329 3.668447 GAGCTTGAAGAGGAACACATGA 58.332 45.455 0.00 0.00 0.00 3.07
329 330 4.067896 GAGCTTGAAGAGGAACACATGAA 58.932 43.478 0.00 0.00 0.00 2.57
330 331 4.070716 AGCTTGAAGAGGAACACATGAAG 58.929 43.478 0.00 0.00 0.00 3.02
331 332 4.067896 GCTTGAAGAGGAACACATGAAGA 58.932 43.478 0.00 0.00 0.00 2.87
332 333 4.153835 GCTTGAAGAGGAACACATGAAGAG 59.846 45.833 0.00 0.00 0.00 2.85
333 334 3.668447 TGAAGAGGAACACATGAAGAGC 58.332 45.455 0.00 0.00 0.00 4.09
334 335 2.376808 AGAGGAACACATGAAGAGCG 57.623 50.000 0.00 0.00 0.00 5.03
335 336 1.620819 AGAGGAACACATGAAGAGCGT 59.379 47.619 0.00 0.00 0.00 5.07
336 337 1.996191 GAGGAACACATGAAGAGCGTC 59.004 52.381 0.00 0.00 0.00 5.19
337 338 1.620819 AGGAACACATGAAGAGCGTCT 59.379 47.619 0.00 0.00 0.00 4.18
338 339 2.037772 AGGAACACATGAAGAGCGTCTT 59.962 45.455 0.00 0.71 39.87 3.01
364 365 3.532501 AAAAACAGCACCCCGTGG 58.467 55.556 0.00 0.00 33.64 4.94
381 382 4.530857 GGTATCGCCGCTGCCACT 62.531 66.667 0.00 0.00 0.00 4.00
382 383 3.264897 GTATCGCCGCTGCCACTG 61.265 66.667 0.00 0.00 0.00 3.66
383 384 3.457263 TATCGCCGCTGCCACTGA 61.457 61.111 0.00 0.00 0.00 3.41
384 385 3.716539 TATCGCCGCTGCCACTGAC 62.717 63.158 0.00 0.00 0.00 3.51
387 388 3.730761 GCCGCTGCCACTGACAAG 61.731 66.667 0.00 0.00 0.00 3.16
388 389 3.730761 CCGCTGCCACTGACAAGC 61.731 66.667 0.00 0.00 0.00 4.01
389 390 4.081030 CGCTGCCACTGACAAGCG 62.081 66.667 4.25 4.25 39.33 4.68
390 391 3.730761 GCTGCCACTGACAAGCGG 61.731 66.667 0.00 0.00 35.94 5.52
391 392 2.031012 CTGCCACTGACAAGCGGA 59.969 61.111 0.00 0.00 34.73 5.54
392 393 1.597854 CTGCCACTGACAAGCGGAA 60.598 57.895 0.00 0.00 34.73 4.30
393 394 1.845809 CTGCCACTGACAAGCGGAAC 61.846 60.000 0.00 0.00 34.73 3.62
394 395 1.891919 GCCACTGACAAGCGGAACA 60.892 57.895 0.00 0.00 0.00 3.18
395 396 1.444119 GCCACTGACAAGCGGAACAA 61.444 55.000 0.00 0.00 0.00 2.83
396 397 1.021202 CCACTGACAAGCGGAACAAA 58.979 50.000 0.00 0.00 0.00 2.83
397 398 1.002468 CCACTGACAAGCGGAACAAAG 60.002 52.381 0.00 0.00 0.00 2.77
398 399 1.939934 CACTGACAAGCGGAACAAAGA 59.060 47.619 0.00 0.00 0.00 2.52
399 400 2.549754 CACTGACAAGCGGAACAAAGAT 59.450 45.455 0.00 0.00 0.00 2.40
400 401 3.003689 CACTGACAAGCGGAACAAAGATT 59.996 43.478 0.00 0.00 0.00 2.40
401 402 3.632145 ACTGACAAGCGGAACAAAGATTT 59.368 39.130 0.00 0.00 0.00 2.17
402 403 4.222114 CTGACAAGCGGAACAAAGATTTC 58.778 43.478 0.00 0.00 0.00 2.17
403 404 3.226347 GACAAGCGGAACAAAGATTTCG 58.774 45.455 0.00 0.00 0.00 3.46
404 405 1.978782 CAAGCGGAACAAAGATTTCGC 59.021 47.619 2.97 2.97 0.00 4.70
405 406 0.521735 AGCGGAACAAAGATTTCGCC 59.478 50.000 7.52 0.00 0.00 5.54
406 407 0.521735 GCGGAACAAAGATTTCGCCT 59.478 50.000 0.00 0.00 0.00 5.52
407 408 1.068541 GCGGAACAAAGATTTCGCCTT 60.069 47.619 0.00 0.00 0.00 4.35
408 409 2.584791 CGGAACAAAGATTTCGCCTTG 58.415 47.619 0.00 0.00 0.00 3.61
409 410 2.668279 CGGAACAAAGATTTCGCCTTGG 60.668 50.000 0.00 0.00 0.00 3.61
410 411 2.328473 GAACAAAGATTTCGCCTTGGC 58.672 47.619 0.75 0.75 0.00 4.52
411 412 0.603065 ACAAAGATTTCGCCTTGGCC 59.397 50.000 6.02 0.00 0.00 5.36
412 413 0.602562 CAAAGATTTCGCCTTGGCCA 59.397 50.000 0.00 0.00 0.00 5.36
413 414 0.890683 AAAGATTTCGCCTTGGCCAG 59.109 50.000 5.11 0.00 0.00 4.85
414 415 1.598701 AAGATTTCGCCTTGGCCAGC 61.599 55.000 5.11 6.16 0.00 4.85
421 422 3.437795 CCTTGGCCAGCGCTTGAG 61.438 66.667 13.50 3.38 34.44 3.02
422 423 4.112341 CTTGGCCAGCGCTTGAGC 62.112 66.667 13.50 13.77 34.44 4.26
423 424 4.953010 TTGGCCAGCGCTTGAGCA 62.953 61.111 21.46 8.43 42.21 4.26
424 425 4.953010 TGGCCAGCGCTTGAGCAA 62.953 61.111 21.46 10.85 42.21 3.91
425 426 3.446570 GGCCAGCGCTTGAGCAAT 61.447 61.111 21.46 0.00 42.21 3.56
426 427 2.101770 GCCAGCGCTTGAGCAATC 59.898 61.111 13.50 0.00 42.21 2.67
427 428 2.796651 CCAGCGCTTGAGCAATCC 59.203 61.111 7.50 0.00 42.21 3.01
428 429 2.768492 CCAGCGCTTGAGCAATCCC 61.768 63.158 7.50 0.00 42.21 3.85
429 430 2.042259 CAGCGCTTGAGCAATCCCA 61.042 57.895 7.50 0.00 42.21 4.37
430 431 1.303561 AGCGCTTGAGCAATCCCAA 60.304 52.632 2.64 0.00 42.21 4.12
431 432 0.895100 AGCGCTTGAGCAATCCCAAA 60.895 50.000 2.64 0.00 42.21 3.28
432 433 0.457337 GCGCTTGAGCAATCCCAAAG 60.457 55.000 0.00 0.00 42.21 2.77
433 434 0.457337 CGCTTGAGCAATCCCAAAGC 60.457 55.000 3.65 0.00 42.21 3.51
434 435 0.108472 GCTTGAGCAATCCCAAAGCC 60.108 55.000 0.00 0.00 41.59 4.35
435 436 1.553706 CTTGAGCAATCCCAAAGCCT 58.446 50.000 0.00 0.00 0.00 4.58
436 437 1.475682 CTTGAGCAATCCCAAAGCCTC 59.524 52.381 0.00 0.00 0.00 4.70
437 438 0.323725 TGAGCAATCCCAAAGCCTCC 60.324 55.000 0.00 0.00 0.00 4.30
438 439 0.323725 GAGCAATCCCAAAGCCTCCA 60.324 55.000 0.00 0.00 0.00 3.86
439 440 0.324091 AGCAATCCCAAAGCCTCCAG 60.324 55.000 0.00 0.00 0.00 3.86
440 441 1.325476 GCAATCCCAAAGCCTCCAGG 61.325 60.000 0.00 0.00 38.53 4.45
441 442 0.040204 CAATCCCAAAGCCTCCAGGT 59.960 55.000 0.00 0.00 37.57 4.00
442 443 0.332972 AATCCCAAAGCCTCCAGGTC 59.667 55.000 0.00 0.00 37.57 3.85
443 444 0.551131 ATCCCAAAGCCTCCAGGTCT 60.551 55.000 0.00 0.00 37.57 3.85
444 445 1.201429 TCCCAAAGCCTCCAGGTCTC 61.201 60.000 0.00 0.00 37.57 3.36
445 446 1.078848 CCAAAGCCTCCAGGTCTCG 60.079 63.158 0.00 0.00 37.57 4.04
446 447 1.544825 CCAAAGCCTCCAGGTCTCGA 61.545 60.000 0.00 0.00 37.57 4.04
447 448 0.108424 CAAAGCCTCCAGGTCTCGAG 60.108 60.000 5.93 5.93 37.57 4.04
448 449 0.543174 AAAGCCTCCAGGTCTCGAGT 60.543 55.000 13.13 0.00 37.57 4.18
449 450 0.968393 AAGCCTCCAGGTCTCGAGTC 60.968 60.000 13.13 6.74 37.57 3.36
450 451 2.766400 GCCTCCAGGTCTCGAGTCG 61.766 68.421 13.13 6.09 37.57 4.18
451 452 2.115911 CCTCCAGGTCTCGAGTCGG 61.116 68.421 13.54 8.87 0.00 4.79
452 453 1.078356 CTCCAGGTCTCGAGTCGGA 60.078 63.158 13.54 12.51 0.00 4.55
453 454 1.078356 TCCAGGTCTCGAGTCGGAG 60.078 63.158 13.54 9.00 35.32 4.63
454 455 1.078356 CCAGGTCTCGAGTCGGAGA 60.078 63.158 13.54 11.21 40.64 3.71
455 456 0.464735 CCAGGTCTCGAGTCGGAGAT 60.465 60.000 13.54 0.00 44.34 2.75
456 457 0.660488 CAGGTCTCGAGTCGGAGATG 59.340 60.000 13.54 6.89 44.34 2.90
457 458 0.542333 AGGTCTCGAGTCGGAGATGA 59.458 55.000 13.54 1.23 44.34 2.92
458 459 0.941542 GGTCTCGAGTCGGAGATGAG 59.058 60.000 13.54 1.21 44.34 2.90
459 460 0.941542 GTCTCGAGTCGGAGATGAGG 59.058 60.000 13.54 0.00 44.34 3.86
460 461 0.831307 TCTCGAGTCGGAGATGAGGA 59.169 55.000 13.54 0.00 40.67 3.71
461 462 1.202592 TCTCGAGTCGGAGATGAGGAG 60.203 57.143 13.54 0.00 40.67 3.69
462 463 0.542333 TCGAGTCGGAGATGAGGAGT 59.458 55.000 13.54 0.00 40.67 3.85
463 464 0.941542 CGAGTCGGAGATGAGGAGTC 59.058 60.000 4.10 0.00 40.67 3.36
464 465 1.314730 GAGTCGGAGATGAGGAGTCC 58.685 60.000 0.00 0.00 40.67 3.85
465 466 0.626382 AGTCGGAGATGAGGAGTCCA 59.374 55.000 12.86 0.00 40.67 4.02
466 467 0.741915 GTCGGAGATGAGGAGTCCAC 59.258 60.000 12.86 5.67 40.67 4.02
467 468 0.395862 TCGGAGATGAGGAGTCCACC 60.396 60.000 12.86 3.13 0.00 4.61
468 469 1.729470 CGGAGATGAGGAGTCCACCG 61.729 65.000 12.86 11.84 34.73 4.94
469 470 0.684805 GGAGATGAGGAGTCCACCGT 60.685 60.000 12.86 3.87 34.73 4.83
470 471 1.187087 GAGATGAGGAGTCCACCGTT 58.813 55.000 12.86 0.00 34.73 4.44
471 472 0.898320 AGATGAGGAGTCCACCGTTG 59.102 55.000 12.86 0.00 34.73 4.10
472 473 0.108138 GATGAGGAGTCCACCGTTGG 60.108 60.000 12.86 0.00 45.56 3.77
473 474 0.836400 ATGAGGAGTCCACCGTTGGT 60.836 55.000 12.86 0.00 44.35 3.67
474 475 1.292541 GAGGAGTCCACCGTTGGTC 59.707 63.158 12.86 0.00 44.35 4.02
475 476 2.048503 GGAGTCCACCGTTGGTCG 60.049 66.667 3.60 0.00 44.35 4.79
476 477 2.737376 GAGTCCACCGTTGGTCGC 60.737 66.667 0.00 0.00 44.35 5.19
477 478 3.509137 GAGTCCACCGTTGGTCGCA 62.509 63.158 0.00 0.00 44.35 5.10
478 479 2.589442 GTCCACCGTTGGTCGCAA 60.589 61.111 0.00 0.00 44.35 4.85
479 480 2.589442 TCCACCGTTGGTCGCAAC 60.589 61.111 0.00 0.00 44.35 4.17
480 481 3.656045 CCACCGTTGGTCGCAACC 61.656 66.667 0.00 0.00 46.66 3.77
488 489 3.799755 GGTCGCAACCGGCATGAC 61.800 66.667 11.78 9.68 45.17 3.06
489 490 3.047280 GTCGCAACCGGCATGACA 61.047 61.111 11.78 0.00 45.17 3.58
490 491 2.741985 TCGCAACCGGCATGACAG 60.742 61.111 11.78 0.00 45.17 3.51
491 492 2.741985 CGCAACCGGCATGACAGA 60.742 61.111 11.78 0.00 45.17 3.41
492 493 2.324330 CGCAACCGGCATGACAGAA 61.324 57.895 11.78 0.00 45.17 3.02
493 494 1.851021 CGCAACCGGCATGACAGAAA 61.851 55.000 11.78 0.00 45.17 2.52
494 495 0.313672 GCAACCGGCATGACAGAAAA 59.686 50.000 11.78 0.00 43.97 2.29
495 496 1.930371 GCAACCGGCATGACAGAAAAC 60.930 52.381 11.78 0.00 43.97 2.43
496 497 0.958822 AACCGGCATGACAGAAAACC 59.041 50.000 0.00 0.00 0.00 3.27
497 498 1.234615 ACCGGCATGACAGAAAACCG 61.235 55.000 0.00 0.00 40.30 4.44
498 499 1.154225 CGGCATGACAGAAAACCGC 60.154 57.895 0.00 0.00 33.46 5.68
499 500 1.212751 GGCATGACAGAAAACCGCC 59.787 57.895 0.00 0.00 0.00 6.13
500 501 1.523154 GGCATGACAGAAAACCGCCA 61.523 55.000 0.00 0.00 37.98 5.69
501 502 0.387239 GCATGACAGAAAACCGCCAC 60.387 55.000 0.00 0.00 0.00 5.01
502 503 0.110238 CATGACAGAAAACCGCCACG 60.110 55.000 0.00 0.00 0.00 4.94
503 504 0.534203 ATGACAGAAAACCGCCACGT 60.534 50.000 0.00 0.00 0.00 4.49
504 505 1.155424 TGACAGAAAACCGCCACGTC 61.155 55.000 0.00 0.00 0.00 4.34
505 506 1.838568 GACAGAAAACCGCCACGTCC 61.839 60.000 0.00 0.00 0.00 4.79
506 507 2.663852 AGAAAACCGCCACGTCCG 60.664 61.111 0.00 0.00 0.00 4.79
556 557 1.849039 AGGCAAGGCTTGGAGATGTAT 59.151 47.619 27.25 0.00 0.00 2.29
557 558 3.048600 AGGCAAGGCTTGGAGATGTATA 58.951 45.455 27.25 0.00 0.00 1.47
565 566 4.381411 GCTTGGAGATGTATACAAGGACC 58.619 47.826 10.14 11.30 40.37 4.46
582 583 2.680913 CCAAGAGGCGGCGAGTTTG 61.681 63.158 12.98 8.91 0.00 2.93
620 621 5.105957 TGCAAAAATTATGTATCCGTGCTGT 60.106 36.000 0.00 0.00 0.00 4.40
704 707 1.913419 AGGCGTTGGGAAGGAAATAGA 59.087 47.619 0.00 0.00 0.00 1.98
821 830 2.459442 GGCAGTCGCACAGATCTGC 61.459 63.158 22.83 9.78 45.07 4.26
875 884 1.923909 CCGTCCTTTCCCTCCCCTT 60.924 63.158 0.00 0.00 0.00 3.95
876 885 1.602771 CGTCCTTTCCCTCCCCTTC 59.397 63.158 0.00 0.00 0.00 3.46
1849 1858 0.981183 AGGTATGGTCGCCTCAAACA 59.019 50.000 0.00 0.00 0.00 2.83
1852 1861 2.752903 GGTATGGTCGCCTCAAACAATT 59.247 45.455 0.00 0.00 0.00 2.32
1853 1862 3.427503 GGTATGGTCGCCTCAAACAATTG 60.428 47.826 3.24 3.24 37.92 2.32
1854 1863 0.313672 TGGTCGCCTCAAACAATTGC 59.686 50.000 5.05 0.00 36.45 3.56
1880 1889 2.525750 ATGCAACGCTGTGTATTTCG 57.474 45.000 0.00 0.00 0.00 3.46
1905 1919 2.607180 TGTATGTTTCGATGGTGCGATG 59.393 45.455 0.00 0.00 40.35 3.84
1906 1920 0.378257 ATGTTTCGATGGTGCGATGC 59.622 50.000 0.00 0.00 40.35 3.91
1907 1921 1.296867 GTTTCGATGGTGCGATGCG 60.297 57.895 0.00 0.00 40.35 4.73
1908 1922 1.446966 TTTCGATGGTGCGATGCGA 60.447 52.632 0.00 0.00 40.35 5.10
1909 1923 0.809636 TTTCGATGGTGCGATGCGAT 60.810 50.000 0.00 0.00 40.35 4.58
2131 2149 3.994204 TTCTGCCGGTTCCTTTAAAAC 57.006 42.857 1.90 0.00 0.00 2.43
2155 2173 4.678509 TGACGCTTGTAACCATGATTTC 57.321 40.909 0.00 0.00 0.00 2.17
2240 2258 1.725641 CTCTGCCACGATGCAAGTTA 58.274 50.000 0.00 0.00 41.51 2.24
2267 2285 1.559831 GGTTTTCACTGCACAACTGC 58.440 50.000 0.00 0.00 44.52 4.40
2270 2288 1.401761 TTTCACTGCACAACTGCCAT 58.598 45.000 0.00 0.00 43.51 4.40
2271 2289 1.401761 TTCACTGCACAACTGCCATT 58.598 45.000 0.00 0.00 43.51 3.16
2272 2290 0.669619 TCACTGCACAACTGCCATTG 59.330 50.000 0.00 0.00 43.51 2.82
2273 2291 0.319211 CACTGCACAACTGCCATTGG 60.319 55.000 0.00 0.00 43.51 3.16
2274 2292 0.467844 ACTGCACAACTGCCATTGGA 60.468 50.000 6.95 0.00 43.51 3.53
2275 2293 0.038892 CTGCACAACTGCCATTGGAC 60.039 55.000 6.95 0.00 43.51 4.02
2276 2294 0.754587 TGCACAACTGCCATTGGACA 60.755 50.000 6.95 3.28 43.51 4.02
2277 2295 0.388659 GCACAACTGCCATTGGACAA 59.611 50.000 6.95 0.00 37.45 3.18
2278 2296 1.869342 GCACAACTGCCATTGGACAAC 60.869 52.381 6.95 0.00 37.45 3.32
2279 2297 1.682854 CACAACTGCCATTGGACAACT 59.317 47.619 6.95 0.00 33.63 3.16
2280 2298 1.682854 ACAACTGCCATTGGACAACTG 59.317 47.619 6.95 6.70 33.63 3.16
2281 2299 1.955778 CAACTGCCATTGGACAACTGA 59.044 47.619 6.95 0.00 0.00 3.41
2282 2300 1.609208 ACTGCCATTGGACAACTGAC 58.391 50.000 6.95 0.00 0.00 3.51
2283 2301 1.133823 ACTGCCATTGGACAACTGACA 60.134 47.619 6.95 0.00 0.00 3.58
2465 2490 5.590259 GGTGCACATAAGACAACCTGATTAT 59.410 40.000 20.43 0.00 0.00 1.28
2466 2491 6.765989 GGTGCACATAAGACAACCTGATTATA 59.234 38.462 20.43 0.00 0.00 0.98
2467 2492 7.041780 GGTGCACATAAGACAACCTGATTATAG 60.042 40.741 20.43 0.00 0.00 1.31
2468 2493 6.992123 TGCACATAAGACAACCTGATTATAGG 59.008 38.462 0.00 0.00 43.71 2.57
2469 2494 7.147567 TGCACATAAGACAACCTGATTATAGGA 60.148 37.037 0.00 0.00 40.42 2.94
2470 2495 7.880195 GCACATAAGACAACCTGATTATAGGAT 59.120 37.037 0.00 0.00 40.42 3.24
2471 2496 9.212641 CACATAAGACAACCTGATTATAGGATG 57.787 37.037 0.00 0.00 43.87 3.51
2505 2530 3.297134 TTGCCAGTTTCTTTCTGAGGT 57.703 42.857 0.00 0.00 35.20 3.85
2652 2764 5.043903 CAGAGAACGAACCATATCGATGTT 58.956 41.667 8.54 3.51 45.48 2.71
2653 2765 5.520288 CAGAGAACGAACCATATCGATGTTT 59.480 40.000 8.54 0.00 45.48 2.83
2654 2766 5.520288 AGAGAACGAACCATATCGATGTTTG 59.480 40.000 8.54 10.14 45.48 2.93
2671 2783 4.650734 TGTTTGGATGATGCTCTTACACA 58.349 39.130 0.00 0.00 0.00 3.72
2732 2844 7.630026 TGTTCTGACGCATAATGTAATTGATC 58.370 34.615 0.00 0.00 36.99 2.92
2889 3001 1.216064 CCATTCTGGGATGGTGAGGA 58.784 55.000 0.00 0.00 41.37 3.71
2976 3088 4.207019 CGACTGATTTTGCTTGTGGTTTTC 59.793 41.667 0.00 0.00 0.00 2.29
3107 3219 5.973565 GGAAAATGCTTAATCGTGATCCAAG 59.026 40.000 0.00 1.69 0.00 3.61
3154 3266 5.410746 GCGCTATGTGAGTAGTATGGTAGTA 59.589 44.000 0.00 0.00 0.00 1.82
3202 3314 7.381678 ACTTAAAGAATAATTACTCGCCGCTAG 59.618 37.037 0.00 0.00 0.00 3.42
3209 3321 8.458212 AATAATTACTCGCCGCTAGTTTATAC 57.542 34.615 2.48 0.00 0.00 1.47
3210 3322 4.898829 TTACTCGCCGCTAGTTTATACA 57.101 40.909 2.48 0.00 0.00 2.29
3658 3770 8.783093 CATTTGTTCCTCAACTACACAGAAATA 58.217 33.333 0.00 0.00 35.61 1.40
3664 3776 9.739276 TTCCTCAACTACACAGAAATAATTGAT 57.261 29.630 0.00 0.00 0.00 2.57
3791 3907 3.240302 CGAGTAAATCCTACATCCCCCT 58.760 50.000 0.00 0.00 0.00 4.79
3794 3910 5.306160 CGAGTAAATCCTACATCCCCCTTTA 59.694 44.000 0.00 0.00 0.00 1.85
3795 3911 6.013639 CGAGTAAATCCTACATCCCCCTTTAT 60.014 42.308 0.00 0.00 0.00 1.40
3796 3912 7.474364 CGAGTAAATCCTACATCCCCCTTTATT 60.474 40.741 0.00 0.00 0.00 1.40
3878 3994 3.451178 TCCTGTGCCTTAATCCTACTCAC 59.549 47.826 0.00 0.00 0.00 3.51
3919 4035 1.660560 GATGCCCACGCTGCTCAAAT 61.661 55.000 0.00 0.00 35.36 2.32
3940 4056 4.498894 TGCCATCTTGATCTCACTTGAT 57.501 40.909 0.00 0.00 0.00 2.57
3941 4057 4.851843 TGCCATCTTGATCTCACTTGATT 58.148 39.130 0.00 0.00 0.00 2.57
3942 4058 5.258841 TGCCATCTTGATCTCACTTGATTT 58.741 37.500 0.00 0.00 0.00 2.17
3973 4093 5.362430 TGTTAAACCTGCTTCATTTGGAACT 59.638 36.000 0.00 0.00 0.00 3.01
3982 4102 4.217118 GCTTCATTTGGAACTGTCTGTCAT 59.783 41.667 0.00 0.00 0.00 3.06
4035 4159 2.948979 TGTTGTTTGGAGGCTTACTGTG 59.051 45.455 0.00 0.00 0.00 3.66
4259 4383 2.421424 CGATAAGCTCTTTGCAGCCTTT 59.579 45.455 0.00 0.00 45.94 3.11
4580 4704 1.136336 GCACTGAAGCTTCGGTAAACG 60.136 52.381 34.61 24.57 44.62 3.60
4989 5118 3.636153 AGCCCTGTCATTCCTAACTTC 57.364 47.619 0.00 0.00 0.00 3.01
5023 5152 2.607771 CCATGCAAGAAAAACCACCTCG 60.608 50.000 0.00 0.00 0.00 4.63
5032 5163 4.338400 AGAAAAACCACCTCGGAGAAAAAG 59.662 41.667 6.58 0.00 38.63 2.27
5053 5184 6.903340 AAGGGCTTATTAAACTCCTTCCTA 57.097 37.500 0.00 0.00 29.57 2.94
5278 5409 1.544724 TTACCAGCCAGGCAAACATC 58.455 50.000 15.80 0.00 43.14 3.06
5485 5618 2.474410 ACTCCCTAAAAGCCAGTTCG 57.526 50.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.479375 CCCATTTCATTCCCTTCTATCCATG 59.521 44.000 0.00 0.00 0.00 3.66
5 6 5.136737 ACCCATTTCATTCCCTTCTATCCAT 59.863 40.000 0.00 0.00 0.00 3.41
6 7 4.482025 ACCCATTTCATTCCCTTCTATCCA 59.518 41.667 0.00 0.00 0.00 3.41
7 8 5.066913 ACCCATTTCATTCCCTTCTATCC 57.933 43.478 0.00 0.00 0.00 2.59
8 9 6.601332 TGTACCCATTTCATTCCCTTCTATC 58.399 40.000 0.00 0.00 0.00 2.08
9 10 6.590656 TGTACCCATTTCATTCCCTTCTAT 57.409 37.500 0.00 0.00 0.00 1.98
10 11 6.395780 TTGTACCCATTTCATTCCCTTCTA 57.604 37.500 0.00 0.00 0.00 2.10
11 12 4.946160 TGTACCCATTTCATTCCCTTCT 57.054 40.909 0.00 0.00 0.00 2.85
12 13 5.993748 TTTGTACCCATTTCATTCCCTTC 57.006 39.130 0.00 0.00 0.00 3.46
13 14 6.556874 TCTTTTTGTACCCATTTCATTCCCTT 59.443 34.615 0.00 0.00 0.00 3.95
14 15 6.081356 TCTTTTTGTACCCATTTCATTCCCT 58.919 36.000 0.00 0.00 0.00 4.20
15 16 6.353404 TCTTTTTGTACCCATTTCATTCCC 57.647 37.500 0.00 0.00 0.00 3.97
16 17 6.398095 CCTCTTTTTGTACCCATTTCATTCC 58.602 40.000 0.00 0.00 0.00 3.01
17 18 6.014584 ACCCTCTTTTTGTACCCATTTCATTC 60.015 38.462 0.00 0.00 0.00 2.67
18 19 5.843969 ACCCTCTTTTTGTACCCATTTCATT 59.156 36.000 0.00 0.00 0.00 2.57
19 20 5.402630 ACCCTCTTTTTGTACCCATTTCAT 58.597 37.500 0.00 0.00 0.00 2.57
20 21 4.810345 ACCCTCTTTTTGTACCCATTTCA 58.190 39.130 0.00 0.00 0.00 2.69
21 22 5.771165 TGTACCCTCTTTTTGTACCCATTTC 59.229 40.000 0.00 0.00 35.18 2.17
22 23 5.707495 TGTACCCTCTTTTTGTACCCATTT 58.293 37.500 0.00 0.00 35.18 2.32
23 24 5.327737 TGTACCCTCTTTTTGTACCCATT 57.672 39.130 0.00 0.00 35.18 3.16
24 25 5.074804 GTTGTACCCTCTTTTTGTACCCAT 58.925 41.667 0.00 0.00 35.18 4.00
25 26 4.079901 TGTTGTACCCTCTTTTTGTACCCA 60.080 41.667 0.00 0.00 35.18 4.51
26 27 4.276678 GTGTTGTACCCTCTTTTTGTACCC 59.723 45.833 0.00 0.00 35.18 3.69
27 28 4.883006 TGTGTTGTACCCTCTTTTTGTACC 59.117 41.667 0.00 0.00 35.18 3.34
28 29 5.008316 CCTGTGTTGTACCCTCTTTTTGTAC 59.992 44.000 0.00 0.00 36.30 2.90
29 30 5.104444 TCCTGTGTTGTACCCTCTTTTTGTA 60.104 40.000 0.00 0.00 0.00 2.41
30 31 3.951680 CCTGTGTTGTACCCTCTTTTTGT 59.048 43.478 0.00 0.00 0.00 2.83
31 32 4.036380 GTCCTGTGTTGTACCCTCTTTTTG 59.964 45.833 0.00 0.00 0.00 2.44
32 33 4.204799 GTCCTGTGTTGTACCCTCTTTTT 58.795 43.478 0.00 0.00 0.00 1.94
33 34 3.201266 TGTCCTGTGTTGTACCCTCTTTT 59.799 43.478 0.00 0.00 0.00 2.27
34 35 2.775384 TGTCCTGTGTTGTACCCTCTTT 59.225 45.455 0.00 0.00 0.00 2.52
35 36 2.104281 GTGTCCTGTGTTGTACCCTCTT 59.896 50.000 0.00 0.00 0.00 2.85
36 37 1.692519 GTGTCCTGTGTTGTACCCTCT 59.307 52.381 0.00 0.00 0.00 3.69
37 38 1.604693 CGTGTCCTGTGTTGTACCCTC 60.605 57.143 0.00 0.00 0.00 4.30
38 39 0.391597 CGTGTCCTGTGTTGTACCCT 59.608 55.000 0.00 0.00 0.00 4.34
39 40 0.390124 TCGTGTCCTGTGTTGTACCC 59.610 55.000 0.00 0.00 0.00 3.69
40 41 1.862827 GTTCGTGTCCTGTGTTGTACC 59.137 52.381 0.00 0.00 0.00 3.34
41 42 1.519758 CGTTCGTGTCCTGTGTTGTAC 59.480 52.381 0.00 0.00 0.00 2.90
42 43 1.404748 TCGTTCGTGTCCTGTGTTGTA 59.595 47.619 0.00 0.00 0.00 2.41
43 44 0.173935 TCGTTCGTGTCCTGTGTTGT 59.826 50.000 0.00 0.00 0.00 3.32
44 45 1.282817 TTCGTTCGTGTCCTGTGTTG 58.717 50.000 0.00 0.00 0.00 3.33
45 46 1.931172 CTTTCGTTCGTGTCCTGTGTT 59.069 47.619 0.00 0.00 0.00 3.32
46 47 1.135527 TCTTTCGTTCGTGTCCTGTGT 59.864 47.619 0.00 0.00 0.00 3.72
47 48 1.847818 TCTTTCGTTCGTGTCCTGTG 58.152 50.000 0.00 0.00 0.00 3.66
48 49 2.470821 CTTCTTTCGTTCGTGTCCTGT 58.529 47.619 0.00 0.00 0.00 4.00
49 50 1.792949 CCTTCTTTCGTTCGTGTCCTG 59.207 52.381 0.00 0.00 0.00 3.86
50 51 1.872653 GCCTTCTTTCGTTCGTGTCCT 60.873 52.381 0.00 0.00 0.00 3.85
51 52 0.511653 GCCTTCTTTCGTTCGTGTCC 59.488 55.000 0.00 0.00 0.00 4.02
52 53 0.161024 CGCCTTCTTTCGTTCGTGTC 59.839 55.000 0.00 0.00 0.00 3.67
53 54 0.529119 ACGCCTTCTTTCGTTCGTGT 60.529 50.000 0.00 0.00 35.09 4.49
54 55 1.411394 TACGCCTTCTTTCGTTCGTG 58.589 50.000 0.00 0.00 39.79 4.35
55 56 2.138596 TTACGCCTTCTTTCGTTCGT 57.861 45.000 0.00 0.00 39.79 3.85
56 57 2.727798 TCTTTACGCCTTCTTTCGTTCG 59.272 45.455 0.00 0.00 39.79 3.95
57 58 4.387862 TCATCTTTACGCCTTCTTTCGTTC 59.612 41.667 0.00 0.00 39.79 3.95
58 59 4.312443 TCATCTTTACGCCTTCTTTCGTT 58.688 39.130 0.00 0.00 39.79 3.85
59 60 3.921677 TCATCTTTACGCCTTCTTTCGT 58.078 40.909 0.00 0.00 42.09 3.85
60 61 4.783450 GCATCATCTTTACGCCTTCTTTCG 60.783 45.833 0.00 0.00 0.00 3.46
61 62 4.496507 GGCATCATCTTTACGCCTTCTTTC 60.497 45.833 0.00 0.00 39.73 2.62
62 63 3.378427 GGCATCATCTTTACGCCTTCTTT 59.622 43.478 0.00 0.00 39.73 2.52
63 64 2.945668 GGCATCATCTTTACGCCTTCTT 59.054 45.455 0.00 0.00 39.73 2.52
64 65 2.565841 GGCATCATCTTTACGCCTTCT 58.434 47.619 0.00 0.00 39.73 2.85
68 69 3.321497 CTCTAGGCATCATCTTTACGCC 58.679 50.000 0.00 0.00 43.31 5.68
69 70 2.734079 GCTCTAGGCATCATCTTTACGC 59.266 50.000 0.00 0.00 41.35 4.42
82 83 0.107945 CTTGTCCCTGTGCTCTAGGC 60.108 60.000 0.00 0.00 42.22 3.93
83 84 1.205893 GTCTTGTCCCTGTGCTCTAGG 59.794 57.143 0.00 0.00 35.01 3.02
84 85 1.895798 TGTCTTGTCCCTGTGCTCTAG 59.104 52.381 0.00 0.00 0.00 2.43
85 86 2.009681 TGTCTTGTCCCTGTGCTCTA 57.990 50.000 0.00 0.00 0.00 2.43
86 87 1.002888 CATGTCTTGTCCCTGTGCTCT 59.997 52.381 0.00 0.00 0.00 4.09
87 88 1.446907 CATGTCTTGTCCCTGTGCTC 58.553 55.000 0.00 0.00 0.00 4.26
88 89 0.607489 GCATGTCTTGTCCCTGTGCT 60.607 55.000 0.00 0.00 0.00 4.40
89 90 0.607489 AGCATGTCTTGTCCCTGTGC 60.607 55.000 0.00 0.00 0.00 4.57
90 91 1.271001 TGAGCATGTCTTGTCCCTGTG 60.271 52.381 0.00 0.00 0.00 3.66
91 92 1.002888 CTGAGCATGTCTTGTCCCTGT 59.997 52.381 0.00 0.00 0.00 4.00
92 93 1.002888 ACTGAGCATGTCTTGTCCCTG 59.997 52.381 0.00 0.00 0.00 4.45
93 94 1.277557 GACTGAGCATGTCTTGTCCCT 59.722 52.381 0.00 0.00 0.00 4.20
94 95 1.677217 GGACTGAGCATGTCTTGTCCC 60.677 57.143 19.81 10.65 40.09 4.46
95 96 1.002430 TGGACTGAGCATGTCTTGTCC 59.998 52.381 21.63 21.63 43.16 4.02
96 97 2.462456 TGGACTGAGCATGTCTTGTC 57.538 50.000 0.00 5.41 35.04 3.18
97 98 2.880890 GTTTGGACTGAGCATGTCTTGT 59.119 45.455 0.00 0.00 35.04 3.16
98 99 2.880268 TGTTTGGACTGAGCATGTCTTG 59.120 45.455 0.00 0.00 35.04 3.02
99 100 3.144506 CTGTTTGGACTGAGCATGTCTT 58.855 45.455 0.00 0.00 35.04 3.01
100 101 2.369860 TCTGTTTGGACTGAGCATGTCT 59.630 45.455 0.00 0.00 35.04 3.41
101 102 2.771089 TCTGTTTGGACTGAGCATGTC 58.229 47.619 0.00 0.00 31.18 3.06
102 103 2.936919 TCTGTTTGGACTGAGCATGT 57.063 45.000 0.00 0.00 31.18 3.21
103 104 3.405831 TCTTCTGTTTGGACTGAGCATG 58.594 45.455 0.00 0.00 35.53 4.06
104 105 3.777106 TCTTCTGTTTGGACTGAGCAT 57.223 42.857 0.00 0.00 35.53 3.79
105 106 3.777106 ATCTTCTGTTTGGACTGAGCA 57.223 42.857 0.00 0.00 35.53 4.26
106 107 6.818644 TGTTATATCTTCTGTTTGGACTGAGC 59.181 38.462 0.00 0.00 35.53 4.26
107 108 7.009631 CGTGTTATATCTTCTGTTTGGACTGAG 59.990 40.741 0.00 0.00 35.53 3.35
108 109 6.811665 CGTGTTATATCTTCTGTTTGGACTGA 59.188 38.462 0.00 0.00 32.67 3.41
109 110 6.036083 CCGTGTTATATCTTCTGTTTGGACTG 59.964 42.308 0.00 0.00 0.00 3.51
110 111 6.106673 CCGTGTTATATCTTCTGTTTGGACT 58.893 40.000 0.00 0.00 0.00 3.85
111 112 5.220605 GCCGTGTTATATCTTCTGTTTGGAC 60.221 44.000 0.00 0.00 0.00 4.02
112 113 4.873827 GCCGTGTTATATCTTCTGTTTGGA 59.126 41.667 0.00 0.00 0.00 3.53
113 114 4.035208 GGCCGTGTTATATCTTCTGTTTGG 59.965 45.833 0.00 0.00 0.00 3.28
114 115 4.634004 TGGCCGTGTTATATCTTCTGTTTG 59.366 41.667 0.00 0.00 0.00 2.93
115 116 4.839121 TGGCCGTGTTATATCTTCTGTTT 58.161 39.130 0.00 0.00 0.00 2.83
116 117 4.481368 TGGCCGTGTTATATCTTCTGTT 57.519 40.909 0.00 0.00 0.00 3.16
117 118 4.481368 TTGGCCGTGTTATATCTTCTGT 57.519 40.909 0.00 0.00 0.00 3.41
118 119 4.035208 GGTTTGGCCGTGTTATATCTTCTG 59.965 45.833 0.00 0.00 0.00 3.02
119 120 4.196971 GGTTTGGCCGTGTTATATCTTCT 58.803 43.478 0.00 0.00 0.00 2.85
120 121 3.314357 GGGTTTGGCCGTGTTATATCTTC 59.686 47.826 0.00 0.00 38.44 2.87
121 122 3.284617 GGGTTTGGCCGTGTTATATCTT 58.715 45.455 0.00 0.00 38.44 2.40
122 123 2.240160 TGGGTTTGGCCGTGTTATATCT 59.760 45.455 0.00 0.00 38.44 1.98
123 124 2.645802 TGGGTTTGGCCGTGTTATATC 58.354 47.619 0.00 0.00 38.44 1.63
124 125 2.810870 TGGGTTTGGCCGTGTTATAT 57.189 45.000 0.00 0.00 38.44 0.86
125 126 2.581216 TTGGGTTTGGCCGTGTTATA 57.419 45.000 0.00 0.00 38.44 0.98
126 127 1.616374 CTTTGGGTTTGGCCGTGTTAT 59.384 47.619 0.00 0.00 38.44 1.89
127 128 1.033574 CTTTGGGTTTGGCCGTGTTA 58.966 50.000 0.00 0.00 38.44 2.41
128 129 0.973496 ACTTTGGGTTTGGCCGTGTT 60.973 50.000 0.00 0.00 38.44 3.32
129 130 1.380650 ACTTTGGGTTTGGCCGTGT 60.381 52.632 0.00 0.00 38.44 4.49
130 131 1.362355 GACTTTGGGTTTGGCCGTG 59.638 57.895 0.00 0.00 38.44 4.94
131 132 1.076632 TGACTTTGGGTTTGGCCGT 60.077 52.632 0.00 0.00 38.44 5.68
132 133 1.362355 GTGACTTTGGGTTTGGCCG 59.638 57.895 0.00 0.00 38.44 6.13
133 134 1.104577 TCGTGACTTTGGGTTTGGCC 61.105 55.000 0.00 0.00 0.00 5.36
134 135 0.958822 ATCGTGACTTTGGGTTTGGC 59.041 50.000 0.00 0.00 0.00 4.52
135 136 2.504367 AGATCGTGACTTTGGGTTTGG 58.496 47.619 0.00 0.00 0.00 3.28
136 137 4.566004 TCTAGATCGTGACTTTGGGTTTG 58.434 43.478 0.00 0.00 0.00 2.93
137 138 4.322801 CCTCTAGATCGTGACTTTGGGTTT 60.323 45.833 0.00 0.00 0.00 3.27
138 139 3.195825 CCTCTAGATCGTGACTTTGGGTT 59.804 47.826 0.00 0.00 0.00 4.11
139 140 2.761208 CCTCTAGATCGTGACTTTGGGT 59.239 50.000 0.00 0.00 0.00 4.51
140 141 2.101582 CCCTCTAGATCGTGACTTTGGG 59.898 54.545 0.00 0.00 0.00 4.12
141 142 2.101582 CCCCTCTAGATCGTGACTTTGG 59.898 54.545 0.00 0.00 0.00 3.28
142 143 2.482142 GCCCCTCTAGATCGTGACTTTG 60.482 54.545 0.00 0.00 0.00 2.77
143 144 1.757699 GCCCCTCTAGATCGTGACTTT 59.242 52.381 0.00 0.00 0.00 2.66
144 145 1.404843 GCCCCTCTAGATCGTGACTT 58.595 55.000 0.00 0.00 0.00 3.01
145 146 0.820074 CGCCCCTCTAGATCGTGACT 60.820 60.000 0.00 0.00 0.00 3.41
146 147 1.655329 CGCCCCTCTAGATCGTGAC 59.345 63.158 0.00 0.00 0.00 3.67
147 148 1.528542 CCGCCCCTCTAGATCGTGA 60.529 63.158 0.00 0.00 0.00 4.35
148 149 1.519751 CTCCGCCCCTCTAGATCGTG 61.520 65.000 0.00 0.00 0.00 4.35
149 150 1.228306 CTCCGCCCCTCTAGATCGT 60.228 63.158 0.00 0.00 0.00 3.73
150 151 0.958382 CTCTCCGCCCCTCTAGATCG 60.958 65.000 0.00 0.00 0.00 3.69
151 152 1.248101 GCTCTCCGCCCCTCTAGATC 61.248 65.000 0.00 0.00 0.00 2.75
152 153 1.228737 GCTCTCCGCCCCTCTAGAT 60.229 63.158 0.00 0.00 0.00 1.98
153 154 2.196229 GCTCTCCGCCCCTCTAGA 59.804 66.667 0.00 0.00 0.00 2.43
154 155 2.123683 TGCTCTCCGCCCCTCTAG 60.124 66.667 0.00 0.00 38.05 2.43
155 156 2.442272 GTGCTCTCCGCCCCTCTA 60.442 66.667 0.00 0.00 38.05 2.43
161 162 4.521062 ATGCTCGTGCTCTCCGCC 62.521 66.667 11.19 0.00 40.48 6.13
162 163 3.260483 CATGCTCGTGCTCTCCGC 61.260 66.667 11.19 0.00 40.48 5.54
163 164 1.144565 CTTCATGCTCGTGCTCTCCG 61.145 60.000 11.19 0.00 40.48 4.63
164 165 0.108424 ACTTCATGCTCGTGCTCTCC 60.108 55.000 11.19 0.00 40.48 3.71
165 166 1.276415 GACTTCATGCTCGTGCTCTC 58.724 55.000 11.19 0.00 40.48 3.20
166 167 0.108424 GGACTTCATGCTCGTGCTCT 60.108 55.000 11.19 0.00 40.48 4.09
167 168 0.390340 TGGACTTCATGCTCGTGCTC 60.390 55.000 11.19 0.00 40.48 4.26
168 169 0.035317 TTGGACTTCATGCTCGTGCT 59.965 50.000 11.19 0.00 40.48 4.40
169 170 0.166814 GTTGGACTTCATGCTCGTGC 59.833 55.000 1.71 1.71 40.20 5.34
170 171 1.511850 TGTTGGACTTCATGCTCGTG 58.488 50.000 0.00 0.00 0.00 4.35
171 172 2.289631 TGATGTTGGACTTCATGCTCGT 60.290 45.455 0.00 0.00 28.84 4.18
172 173 2.094894 GTGATGTTGGACTTCATGCTCG 59.905 50.000 0.00 0.00 35.23 5.03
173 174 2.421424 GGTGATGTTGGACTTCATGCTC 59.579 50.000 0.00 0.00 35.23 4.26
174 175 2.224843 TGGTGATGTTGGACTTCATGCT 60.225 45.455 0.00 0.00 35.23 3.79
175 176 2.161855 TGGTGATGTTGGACTTCATGC 58.838 47.619 0.00 0.00 35.23 4.06
176 177 4.852134 TTTGGTGATGTTGGACTTCATG 57.148 40.909 0.87 0.00 35.23 3.07
177 178 4.039124 GGTTTTGGTGATGTTGGACTTCAT 59.961 41.667 0.87 0.00 35.23 2.57
178 179 3.383185 GGTTTTGGTGATGTTGGACTTCA 59.617 43.478 0.00 0.00 30.99 3.02
179 180 3.383185 TGGTTTTGGTGATGTTGGACTTC 59.617 43.478 0.00 0.00 0.00 3.01
180 181 3.370104 TGGTTTTGGTGATGTTGGACTT 58.630 40.909 0.00 0.00 0.00 3.01
181 182 3.025322 TGGTTTTGGTGATGTTGGACT 57.975 42.857 0.00 0.00 0.00 3.85
182 183 3.453424 GTTGGTTTTGGTGATGTTGGAC 58.547 45.455 0.00 0.00 0.00 4.02
183 184 2.099921 CGTTGGTTTTGGTGATGTTGGA 59.900 45.455 0.00 0.00 0.00 3.53
184 185 2.468831 CGTTGGTTTTGGTGATGTTGG 58.531 47.619 0.00 0.00 0.00 3.77
185 186 1.857837 GCGTTGGTTTTGGTGATGTTG 59.142 47.619 0.00 0.00 0.00 3.33
186 187 1.202475 GGCGTTGGTTTTGGTGATGTT 60.202 47.619 0.00 0.00 0.00 2.71
187 188 0.387565 GGCGTTGGTTTTGGTGATGT 59.612 50.000 0.00 0.00 0.00 3.06
188 189 0.662970 CGGCGTTGGTTTTGGTGATG 60.663 55.000 0.00 0.00 0.00 3.07
189 190 1.104577 ACGGCGTTGGTTTTGGTGAT 61.105 50.000 6.77 0.00 0.00 3.06
190 191 1.749638 ACGGCGTTGGTTTTGGTGA 60.750 52.632 6.77 0.00 0.00 4.02
191 192 1.587613 CACGGCGTTGGTTTTGGTG 60.588 57.895 11.19 0.00 0.00 4.17
192 193 1.104577 ATCACGGCGTTGGTTTTGGT 61.105 50.000 11.19 0.00 0.00 3.67
193 194 0.386731 GATCACGGCGTTGGTTTTGG 60.387 55.000 11.19 0.00 0.00 3.28
194 195 0.724453 CGATCACGGCGTTGGTTTTG 60.724 55.000 11.19 0.00 35.72 2.44
195 196 1.572447 CGATCACGGCGTTGGTTTT 59.428 52.632 11.19 0.00 35.72 2.43
196 197 2.961669 GCGATCACGGCGTTGGTTT 61.962 57.895 11.19 0.00 40.15 3.27
197 198 3.419759 GCGATCACGGCGTTGGTT 61.420 61.111 11.19 0.00 40.15 3.67
207 208 3.918220 CTTGCTCGCGGCGATCAC 61.918 66.667 26.11 18.36 45.43 3.06
213 214 2.098842 CTATCTTGCTTGCTCGCGGC 62.099 60.000 6.13 9.69 42.22 6.53
214 215 1.930100 CTATCTTGCTTGCTCGCGG 59.070 57.895 6.13 0.00 0.00 6.46
215 216 1.275066 GCTATCTTGCTTGCTCGCG 59.725 57.895 0.00 0.00 0.00 5.87
216 217 1.275066 CGCTATCTTGCTTGCTCGC 59.725 57.895 0.00 0.00 0.00 5.03
217 218 0.574454 GACGCTATCTTGCTTGCTCG 59.426 55.000 0.00 0.00 0.00 5.03
218 219 0.933796 GGACGCTATCTTGCTTGCTC 59.066 55.000 0.00 0.00 0.00 4.26
219 220 0.539051 AGGACGCTATCTTGCTTGCT 59.461 50.000 0.00 0.00 0.00 3.91
220 221 0.933796 GAGGACGCTATCTTGCTTGC 59.066 55.000 0.00 0.00 0.00 4.01
221 222 2.299993 TGAGGACGCTATCTTGCTTG 57.700 50.000 0.00 0.00 0.00 4.01
222 223 2.432146 TCATGAGGACGCTATCTTGCTT 59.568 45.455 0.00 0.00 0.00 3.91
223 224 2.034878 TCATGAGGACGCTATCTTGCT 58.965 47.619 0.00 0.00 0.00 3.91
224 225 2.515926 TCATGAGGACGCTATCTTGC 57.484 50.000 0.00 0.00 0.00 4.01
225 226 4.313277 TCTTCATGAGGACGCTATCTTG 57.687 45.455 2.91 0.00 0.00 3.02
226 227 5.344743 TTTCTTCATGAGGACGCTATCTT 57.655 39.130 7.09 0.00 0.00 2.40
227 228 5.344743 TTTTCTTCATGAGGACGCTATCT 57.655 39.130 7.09 0.00 0.00 1.98
228 229 5.500931 CGTTTTTCTTCATGAGGACGCTATC 60.501 44.000 7.09 0.00 0.00 2.08
229 230 4.330074 CGTTTTTCTTCATGAGGACGCTAT 59.670 41.667 7.09 0.00 0.00 2.97
230 231 3.678072 CGTTTTTCTTCATGAGGACGCTA 59.322 43.478 7.09 0.00 0.00 4.26
231 232 2.480419 CGTTTTTCTTCATGAGGACGCT 59.520 45.455 7.09 0.00 0.00 5.07
232 233 2.478894 TCGTTTTTCTTCATGAGGACGC 59.521 45.455 7.09 0.00 0.00 5.19
233 234 3.421826 CGTCGTTTTTCTTCATGAGGACG 60.422 47.826 7.09 8.59 38.72 4.79
234 235 3.493503 ACGTCGTTTTTCTTCATGAGGAC 59.506 43.478 7.09 0.00 0.00 3.85
235 236 3.724374 ACGTCGTTTTTCTTCATGAGGA 58.276 40.909 2.91 2.91 0.00 3.71
236 237 3.493129 TGACGTCGTTTTTCTTCATGAGG 59.507 43.478 11.62 0.00 0.00 3.86
237 238 4.708868 TGACGTCGTTTTTCTTCATGAG 57.291 40.909 11.62 0.00 0.00 2.90
238 239 4.747605 TCATGACGTCGTTTTTCTTCATGA 59.252 37.500 7.76 15.60 44.34 3.07
239 240 4.840772 GTCATGACGTCGTTTTTCTTCATG 59.159 41.667 10.69 12.34 41.04 3.07
240 241 5.018695 GTCATGACGTCGTTTTTCTTCAT 57.981 39.130 10.69 0.00 0.00 2.57
241 242 4.446857 GTCATGACGTCGTTTTTCTTCA 57.553 40.909 10.69 0.00 0.00 3.02
259 260 1.226575 GCGGATGATGACGACGTCA 60.227 57.895 30.90 30.90 46.90 4.35
260 261 0.930742 GAGCGGATGATGACGACGTC 60.931 60.000 20.97 20.97 0.00 4.34
261 262 1.064296 GAGCGGATGATGACGACGT 59.936 57.895 0.00 0.00 0.00 4.34
262 263 1.658717 GGAGCGGATGATGACGACG 60.659 63.158 0.00 0.00 0.00 5.12
263 264 1.658717 CGGAGCGGATGATGACGAC 60.659 63.158 0.00 0.00 0.00 4.34
264 265 2.721859 CGGAGCGGATGATGACGA 59.278 61.111 0.00 0.00 0.00 4.20
281 282 0.616964 AACCCTAGGTCCGGTTCTCC 60.617 60.000 8.29 0.17 37.89 3.71
282 283 1.273759 AAACCCTAGGTCCGGTTCTC 58.726 55.000 8.29 0.00 41.58 2.87
283 284 1.627329 GAAAACCCTAGGTCCGGTTCT 59.373 52.381 8.29 2.66 41.58 3.01
284 285 1.339438 GGAAAACCCTAGGTCCGGTTC 60.339 57.143 8.29 3.98 41.58 3.62
285 286 0.694771 GGAAAACCCTAGGTCCGGTT 59.305 55.000 8.29 1.41 44.35 4.44
286 287 1.203441 GGGAAAACCCTAGGTCCGGT 61.203 60.000 8.29 0.00 33.12 5.28
287 288 1.605992 GGGAAAACCCTAGGTCCGG 59.394 63.158 8.29 0.00 33.12 5.14
297 298 0.881796 CTTCAAGCTCGGGGAAAACC 59.118 55.000 0.00 0.00 39.11 3.27
298 299 1.807142 CTCTTCAAGCTCGGGGAAAAC 59.193 52.381 0.00 0.00 0.00 2.43
299 300 1.271379 CCTCTTCAAGCTCGGGGAAAA 60.271 52.381 0.00 0.00 0.00 2.29
300 301 0.324943 CCTCTTCAAGCTCGGGGAAA 59.675 55.000 0.00 0.00 0.00 3.13
301 302 0.544357 TCCTCTTCAAGCTCGGGGAA 60.544 55.000 0.00 0.00 0.00 3.97
302 303 0.544357 TTCCTCTTCAAGCTCGGGGA 60.544 55.000 0.00 0.00 0.00 4.81
303 304 0.391793 GTTCCTCTTCAAGCTCGGGG 60.392 60.000 0.00 0.00 0.00 5.73
304 305 0.321671 TGTTCCTCTTCAAGCTCGGG 59.678 55.000 0.00 0.00 0.00 5.14
305 306 1.270305 TGTGTTCCTCTTCAAGCTCGG 60.270 52.381 0.00 0.00 0.00 4.63
306 307 2.154854 TGTGTTCCTCTTCAAGCTCG 57.845 50.000 0.00 0.00 0.00 5.03
307 308 3.668447 TCATGTGTTCCTCTTCAAGCTC 58.332 45.455 0.00 0.00 0.00 4.09
308 309 3.777106 TCATGTGTTCCTCTTCAAGCT 57.223 42.857 0.00 0.00 0.00 3.74
309 310 4.067896 TCTTCATGTGTTCCTCTTCAAGC 58.932 43.478 0.00 0.00 0.00 4.01
310 311 4.153835 GCTCTTCATGTGTTCCTCTTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
311 312 4.067896 GCTCTTCATGTGTTCCTCTTCAA 58.932 43.478 0.00 0.00 0.00 2.69
312 313 3.668447 GCTCTTCATGTGTTCCTCTTCA 58.332 45.455 0.00 0.00 0.00 3.02
313 314 2.670414 CGCTCTTCATGTGTTCCTCTTC 59.330 50.000 0.00 0.00 0.00 2.87
314 315 2.037772 ACGCTCTTCATGTGTTCCTCTT 59.962 45.455 0.00 0.00 0.00 2.85
315 316 1.620819 ACGCTCTTCATGTGTTCCTCT 59.379 47.619 0.00 0.00 0.00 3.69
316 317 1.996191 GACGCTCTTCATGTGTTCCTC 59.004 52.381 0.00 0.00 0.00 3.71
317 318 1.620819 AGACGCTCTTCATGTGTTCCT 59.379 47.619 0.00 0.00 0.00 3.36
318 319 2.086054 AGACGCTCTTCATGTGTTCC 57.914 50.000 0.00 0.00 0.00 3.62
347 348 2.131067 CCCACGGGGTGCTGTTTTT 61.131 57.895 1.28 0.00 38.25 1.94
348 349 2.520741 CCCACGGGGTGCTGTTTT 60.521 61.111 1.28 0.00 38.25 2.43
364 365 4.530857 AGTGGCAGCGGCGATACC 62.531 66.667 12.98 10.05 42.47 2.73
365 366 3.264897 CAGTGGCAGCGGCGATAC 61.265 66.667 12.98 0.00 42.47 2.24
366 367 3.457263 TCAGTGGCAGCGGCGATA 61.457 61.111 12.98 0.00 42.47 2.92
370 371 3.730761 CTTGTCAGTGGCAGCGGC 61.731 66.667 0.00 0.00 40.13 6.53
371 372 3.730761 GCTTGTCAGTGGCAGCGG 61.731 66.667 0.00 0.00 0.00 5.52
372 373 4.081030 CGCTTGTCAGTGGCAGCG 62.081 66.667 21.09 21.09 39.33 5.18
373 374 3.730761 CCGCTTGTCAGTGGCAGC 61.731 66.667 0.00 3.34 43.92 5.25
378 379 1.939934 TCTTTGTTCCGCTTGTCAGTG 59.060 47.619 0.00 0.00 0.00 3.66
379 380 2.325583 TCTTTGTTCCGCTTGTCAGT 57.674 45.000 0.00 0.00 0.00 3.41
380 381 3.904136 AATCTTTGTTCCGCTTGTCAG 57.096 42.857 0.00 0.00 0.00 3.51
381 382 3.303725 CGAAATCTTTGTTCCGCTTGTCA 60.304 43.478 0.00 0.00 0.00 3.58
382 383 3.226347 CGAAATCTTTGTTCCGCTTGTC 58.774 45.455 0.00 0.00 0.00 3.18
383 384 2.604614 GCGAAATCTTTGTTCCGCTTGT 60.605 45.455 0.00 0.00 0.00 3.16
384 385 1.978782 GCGAAATCTTTGTTCCGCTTG 59.021 47.619 0.00 0.00 0.00 4.01
385 386 1.068541 GGCGAAATCTTTGTTCCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
386 387 0.521735 GGCGAAATCTTTGTTCCGCT 59.478 50.000 0.00 0.00 0.00 5.52
387 388 0.521735 AGGCGAAATCTTTGTTCCGC 59.478 50.000 0.00 0.00 0.00 5.54
388 389 2.584791 CAAGGCGAAATCTTTGTTCCG 58.415 47.619 0.00 0.00 0.00 4.30
389 390 2.926586 GCCAAGGCGAAATCTTTGTTCC 60.927 50.000 0.00 0.00 0.00 3.62
390 391 2.328473 GCCAAGGCGAAATCTTTGTTC 58.672 47.619 0.00 0.00 0.00 3.18
391 392 1.000843 GGCCAAGGCGAAATCTTTGTT 59.999 47.619 4.80 0.00 43.06 2.83
392 393 0.603065 GGCCAAGGCGAAATCTTTGT 59.397 50.000 4.80 0.00 43.06 2.83
393 394 0.602562 TGGCCAAGGCGAAATCTTTG 59.397 50.000 0.61 0.00 43.06 2.77
394 395 0.890683 CTGGCCAAGGCGAAATCTTT 59.109 50.000 7.01 0.00 43.06 2.52
395 396 1.598701 GCTGGCCAAGGCGAAATCTT 61.599 55.000 7.01 0.00 43.06 2.40
396 397 2.048603 GCTGGCCAAGGCGAAATCT 61.049 57.895 7.01 0.00 43.06 2.40
397 398 2.491621 GCTGGCCAAGGCGAAATC 59.508 61.111 7.01 0.00 43.06 2.17
404 405 3.437795 CTCAAGCGCTGGCCAAGG 61.438 66.667 12.58 1.93 41.24 3.61
405 406 4.112341 GCTCAAGCGCTGGCCAAG 62.112 66.667 12.58 1.87 41.24 3.61
406 407 4.953010 TGCTCAAGCGCTGGCCAA 62.953 61.111 12.58 0.00 45.83 4.52
407 408 4.953010 TTGCTCAAGCGCTGGCCA 62.953 61.111 12.58 4.71 45.83 5.36
408 409 3.407046 GATTGCTCAAGCGCTGGCC 62.407 63.158 12.58 2.51 45.83 5.36
409 410 2.101770 GATTGCTCAAGCGCTGGC 59.898 61.111 12.58 16.85 45.83 4.85
410 411 2.768492 GGGATTGCTCAAGCGCTGG 61.768 63.158 12.58 8.66 45.83 4.85
411 412 1.588824 TTGGGATTGCTCAAGCGCTG 61.589 55.000 12.58 5.47 45.83 5.18
412 413 0.895100 TTTGGGATTGCTCAAGCGCT 60.895 50.000 2.64 2.64 45.83 5.92
413 414 0.457337 CTTTGGGATTGCTCAAGCGC 60.457 55.000 0.00 0.00 45.83 5.92
414 415 0.457337 GCTTTGGGATTGCTCAAGCG 60.457 55.000 0.00 0.00 45.83 4.68
415 416 0.108472 GGCTTTGGGATTGCTCAAGC 60.108 55.000 0.00 0.00 35.54 4.01
416 417 1.475682 GAGGCTTTGGGATTGCTCAAG 59.524 52.381 0.00 0.00 35.54 3.02
417 418 1.549203 GAGGCTTTGGGATTGCTCAA 58.451 50.000 0.00 0.00 31.14 3.02
418 419 0.323725 GGAGGCTTTGGGATTGCTCA 60.324 55.000 0.00 0.00 0.00 4.26
419 420 0.323725 TGGAGGCTTTGGGATTGCTC 60.324 55.000 0.00 0.00 0.00 4.26
420 421 0.324091 CTGGAGGCTTTGGGATTGCT 60.324 55.000 0.00 0.00 0.00 3.91
421 422 1.325476 CCTGGAGGCTTTGGGATTGC 61.325 60.000 0.00 0.00 0.00 3.56
422 423 0.040204 ACCTGGAGGCTTTGGGATTG 59.960 55.000 0.00 0.00 39.32 2.67
423 424 0.332972 GACCTGGAGGCTTTGGGATT 59.667 55.000 0.00 0.00 39.32 3.01
424 425 0.551131 AGACCTGGAGGCTTTGGGAT 60.551 55.000 0.00 0.00 39.32 3.85
425 426 1.151810 AGACCTGGAGGCTTTGGGA 60.152 57.895 0.00 0.00 39.32 4.37
426 427 1.301293 GAGACCTGGAGGCTTTGGG 59.699 63.158 0.00 0.00 39.32 4.12
427 428 1.078848 CGAGACCTGGAGGCTTTGG 60.079 63.158 0.00 0.00 39.32 3.28
428 429 0.108424 CTCGAGACCTGGAGGCTTTG 60.108 60.000 6.58 0.00 39.32 2.77
429 430 0.543174 ACTCGAGACCTGGAGGCTTT 60.543 55.000 21.68 0.00 39.36 3.51
430 431 0.968393 GACTCGAGACCTGGAGGCTT 60.968 60.000 21.68 0.00 39.92 4.35
431 432 1.379309 GACTCGAGACCTGGAGGCT 60.379 63.158 21.68 0.00 39.92 4.58
432 433 2.766400 CGACTCGAGACCTGGAGGC 61.766 68.421 21.68 8.99 39.69 4.70
433 434 2.115911 CCGACTCGAGACCTGGAGG 61.116 68.421 21.68 5.39 39.36 4.30
434 435 1.078356 TCCGACTCGAGACCTGGAG 60.078 63.158 21.68 7.38 40.62 3.86
435 436 1.078356 CTCCGACTCGAGACCTGGA 60.078 63.158 21.68 17.55 30.97 3.86
436 437 0.464735 ATCTCCGACTCGAGACCTGG 60.465 60.000 21.68 14.29 41.60 4.45
437 438 0.660488 CATCTCCGACTCGAGACCTG 59.340 60.000 21.68 6.09 41.60 4.00
438 439 0.542333 TCATCTCCGACTCGAGACCT 59.458 55.000 21.68 0.00 41.60 3.85
439 440 0.941542 CTCATCTCCGACTCGAGACC 59.058 60.000 21.68 9.43 41.60 3.85
440 441 0.941542 CCTCATCTCCGACTCGAGAC 59.058 60.000 21.68 12.76 41.60 3.36
441 442 0.831307 TCCTCATCTCCGACTCGAGA 59.169 55.000 21.68 0.00 42.93 4.04
442 443 1.225855 CTCCTCATCTCCGACTCGAG 58.774 60.000 11.84 11.84 0.00 4.04
443 444 0.542333 ACTCCTCATCTCCGACTCGA 59.458 55.000 0.00 0.00 0.00 4.04
444 445 0.941542 GACTCCTCATCTCCGACTCG 59.058 60.000 0.00 0.00 0.00 4.18
445 446 1.314730 GGACTCCTCATCTCCGACTC 58.685 60.000 0.00 0.00 0.00 3.36
446 447 0.626382 TGGACTCCTCATCTCCGACT 59.374 55.000 0.00 0.00 0.00 4.18
447 448 0.741915 GTGGACTCCTCATCTCCGAC 59.258 60.000 0.00 0.00 0.00 4.79
448 449 0.395862 GGTGGACTCCTCATCTCCGA 60.396 60.000 0.00 0.00 0.00 4.55
449 450 1.729470 CGGTGGACTCCTCATCTCCG 61.729 65.000 0.00 0.00 0.00 4.63
450 451 0.684805 ACGGTGGACTCCTCATCTCC 60.685 60.000 0.00 0.00 0.00 3.71
451 452 1.134965 CAACGGTGGACTCCTCATCTC 60.135 57.143 0.00 0.00 0.00 2.75
452 453 0.898320 CAACGGTGGACTCCTCATCT 59.102 55.000 0.00 0.00 0.00 2.90
453 454 3.442996 CAACGGTGGACTCCTCATC 57.557 57.895 0.00 0.00 0.00 2.92
468 469 3.361977 ATGCCGGTTGCGACCAAC 61.362 61.111 23.21 14.02 46.91 3.77
469 470 3.361158 CATGCCGGTTGCGACCAA 61.361 61.111 23.21 8.22 46.91 3.67
470 471 4.321966 TCATGCCGGTTGCGACCA 62.322 61.111 23.21 3.86 46.91 4.02
471 472 3.799755 GTCATGCCGGTTGCGACC 61.800 66.667 13.74 13.74 45.60 4.79
472 473 3.027170 CTGTCATGCCGGTTGCGAC 62.027 63.158 1.90 5.91 45.60 5.19
473 474 2.723586 TTCTGTCATGCCGGTTGCGA 62.724 55.000 1.90 0.00 45.60 5.10
474 475 1.851021 TTTCTGTCATGCCGGTTGCG 61.851 55.000 1.90 0.00 45.60 4.85
475 476 0.313672 TTTTCTGTCATGCCGGTTGC 59.686 50.000 1.90 0.00 41.77 4.17
476 477 1.335872 GGTTTTCTGTCATGCCGGTTG 60.336 52.381 1.90 1.07 0.00 3.77
477 478 0.958822 GGTTTTCTGTCATGCCGGTT 59.041 50.000 1.90 0.00 0.00 4.44
478 479 1.234615 CGGTTTTCTGTCATGCCGGT 61.235 55.000 1.90 0.00 36.05 5.28
479 480 1.501741 CGGTTTTCTGTCATGCCGG 59.498 57.895 0.00 0.00 36.05 6.13
480 481 1.154225 GCGGTTTTCTGTCATGCCG 60.154 57.895 0.00 0.00 41.79 5.69
481 482 1.212751 GGCGGTTTTCTGTCATGCC 59.787 57.895 0.00 0.00 0.00 4.40
482 483 0.387239 GTGGCGGTTTTCTGTCATGC 60.387 55.000 0.00 0.00 43.05 4.06
483 484 0.110238 CGTGGCGGTTTTCTGTCATG 60.110 55.000 0.00 0.00 43.05 3.07
484 485 0.534203 ACGTGGCGGTTTTCTGTCAT 60.534 50.000 0.00 0.00 43.05 3.06
485 486 1.153329 ACGTGGCGGTTTTCTGTCA 60.153 52.632 0.00 0.00 38.60 3.58
486 487 1.568025 GACGTGGCGGTTTTCTGTC 59.432 57.895 0.00 0.00 0.00 3.51
487 488 1.890510 GGACGTGGCGGTTTTCTGT 60.891 57.895 0.00 0.00 0.00 3.41
488 489 2.943653 GGACGTGGCGGTTTTCTG 59.056 61.111 0.00 0.00 0.00 3.02
489 490 2.663852 CGGACGTGGCGGTTTTCT 60.664 61.111 0.00 0.00 0.00 2.52
490 491 3.719144 CCGGACGTGGCGGTTTTC 61.719 66.667 0.00 0.00 0.00 2.29
531 532 3.688159 CCAAGCCTTGCCTGGTGC 61.688 66.667 0.00 0.00 35.59 5.01
545 546 5.724370 TCTTGGTCCTTGTATACATCTCCAA 59.276 40.000 20.51 20.51 0.00 3.53
556 557 1.980052 CCGCCTCTTGGTCCTTGTA 59.020 57.895 0.00 0.00 35.27 2.41
557 558 2.750350 CCGCCTCTTGGTCCTTGT 59.250 61.111 0.00 0.00 35.27 3.16
565 566 1.227999 TTCAAACTCGCCGCCTCTTG 61.228 55.000 0.00 0.00 0.00 3.02
610 611 3.596214 CCTAAACTAACACAGCACGGAT 58.404 45.455 0.00 0.00 0.00 4.18
611 612 2.289195 CCCTAAACTAACACAGCACGGA 60.289 50.000 0.00 0.00 0.00 4.69
875 884 2.515057 GGCGCGGAGAGAGAGAGA 60.515 66.667 8.83 0.00 0.00 3.10
876 885 2.515991 AGGCGCGGAGAGAGAGAG 60.516 66.667 8.83 0.00 0.00 3.20
932 941 2.750637 GAGACGAGCGGTGGAGGA 60.751 66.667 2.87 0.00 0.00 3.71
1635 1644 1.059006 AGTGCCCCCTCTGGATGATC 61.059 60.000 0.00 0.00 35.39 2.92
1728 1737 1.307097 GCTTGAGATCCCTGTGCATC 58.693 55.000 0.00 0.00 0.00 3.91
1853 1862 1.286354 ACAGCGTTGCATTGCATTGC 61.286 50.000 23.33 23.33 38.76 3.56
1854 1863 0.436913 CACAGCGTTGCATTGCATTG 59.563 50.000 12.95 9.08 38.76 2.82
1880 1889 3.544048 CGCACCATCGAAACATACATGAC 60.544 47.826 0.00 0.00 0.00 3.06
1905 1919 3.195698 GCCACGTGAGGGAATCGC 61.196 66.667 19.30 5.15 35.60 4.58
1906 1920 2.511600 GGCCACGTGAGGGAATCG 60.512 66.667 19.30 0.00 35.60 3.34
1907 1921 2.511600 CGGCCACGTGAGGGAATC 60.512 66.667 19.30 0.00 35.60 2.52
1908 1922 1.910580 ATTCGGCCACGTGAGGGAAT 61.911 55.000 19.30 17.69 41.85 3.01
1909 1923 2.119484 AATTCGGCCACGTGAGGGAA 62.119 55.000 19.30 16.23 41.85 3.97
2131 2149 4.621068 ATCATGGTTACAAGCGTCAATG 57.379 40.909 0.00 0.00 0.00 2.82
2155 2173 7.064371 GGCATGAGCACTGACTATTCTATAATG 59.936 40.741 0.00 0.00 44.61 1.90
2240 2258 0.598065 GCAGTGAAAACCCAGCGAAT 59.402 50.000 0.00 0.00 0.00 3.34
2267 2285 3.825308 CGAATTGTCAGTTGTCCAATGG 58.175 45.455 0.00 0.00 0.00 3.16
2270 2288 2.293170 TGCGAATTGTCAGTTGTCCAA 58.707 42.857 0.00 0.00 0.00 3.53
2271 2289 1.960417 TGCGAATTGTCAGTTGTCCA 58.040 45.000 0.00 0.00 0.00 4.02
2272 2290 3.492313 GAATGCGAATTGTCAGTTGTCC 58.508 45.455 0.00 0.00 0.00 4.02
2273 2291 3.120683 TCGAATGCGAATTGTCAGTTGTC 60.121 43.478 0.00 0.00 44.78 3.18
2274 2292 2.805671 TCGAATGCGAATTGTCAGTTGT 59.194 40.909 0.00 0.00 44.78 3.32
2275 2293 3.454042 TCGAATGCGAATTGTCAGTTG 57.546 42.857 0.00 0.00 44.78 3.16
2370 2388 1.888512 TCAGGCACTTCAAAATGCTCC 59.111 47.619 0.00 0.00 41.74 4.70
2478 2503 5.771666 TCAGAAAGAAACTGGCAATGAAGAT 59.228 36.000 0.00 0.00 36.22 2.40
2547 2572 2.003301 CCTGTCTCTAAGAAAAGCGGC 58.997 52.381 0.00 0.00 0.00 6.53
2652 2764 4.223700 AGAGTGTGTAAGAGCATCATCCAA 59.776 41.667 0.00 0.00 37.82 3.53
2653 2765 3.771479 AGAGTGTGTAAGAGCATCATCCA 59.229 43.478 0.00 0.00 37.82 3.41
2654 2766 4.399004 AGAGTGTGTAAGAGCATCATCC 57.601 45.455 0.00 0.00 37.82 3.51
2671 2783 6.433093 AGCGTTTGGAAATAATTTGGTAGAGT 59.567 34.615 0.00 0.00 0.00 3.24
2732 2844 2.412870 TGTAAACATCTGACCTGCACG 58.587 47.619 0.00 0.00 0.00 5.34
2976 3088 1.532868 CCTTGTTCACTTTCTGCTCGG 59.467 52.381 0.00 0.00 0.00 4.63
3107 3219 1.743996 GTGGGCAGTCAATCTCTTCC 58.256 55.000 0.00 0.00 0.00 3.46
3175 3287 7.205297 AGCGGCGAGTAATTATTCTTTAAGTA 58.795 34.615 12.98 0.00 0.00 2.24
3182 3294 4.850347 ACTAGCGGCGAGTAATTATTCT 57.150 40.909 14.26 0.00 0.00 2.40
3189 3301 4.898829 TGTATAAACTAGCGGCGAGTAA 57.101 40.909 16.10 8.23 0.00 2.24
3209 3321 6.176183 AGACAGGTGATTAGAGGACATTTTG 58.824 40.000 0.00 0.00 0.00 2.44
3210 3322 6.380079 AGACAGGTGATTAGAGGACATTTT 57.620 37.500 0.00 0.00 0.00 1.82
3680 3792 3.593442 TTGTCCAGGTGAGGTTCAAAT 57.407 42.857 0.00 0.00 0.00 2.32
3682 3794 2.711009 AGATTGTCCAGGTGAGGTTCAA 59.289 45.455 0.00 0.00 0.00 2.69
3684 3796 2.355209 GGAGATTGTCCAGGTGAGGTTC 60.355 54.545 0.00 0.00 46.10 3.62
3685 3797 1.630878 GGAGATTGTCCAGGTGAGGTT 59.369 52.381 0.00 0.00 46.10 3.50
3686 3798 1.280457 GGAGATTGTCCAGGTGAGGT 58.720 55.000 0.00 0.00 46.10 3.85
3762 3878 7.416326 GGGATGTAGGATTTACTCGCAATTTTT 60.416 37.037 0.00 0.00 0.00 1.94
3848 3964 2.806945 TAAGGCACAGGATTCTTGGG 57.193 50.000 0.55 0.00 0.00 4.12
3878 3994 0.749649 CTGGAGTAGCCACTGCCTAG 59.250 60.000 0.71 0.00 43.33 3.02
3914 4030 4.851843 AGTGAGATCAAGATGGCATTTGA 58.148 39.130 19.82 19.82 37.68 2.69
3919 4035 3.986996 TCAAGTGAGATCAAGATGGCA 57.013 42.857 0.00 0.00 0.00 4.92
3973 4093 7.495606 ACGCAAAATGATATAAGATGACAGACA 59.504 33.333 0.00 0.00 0.00 3.41
3982 4102 6.521162 TCTGCCTACGCAAAATGATATAAGA 58.479 36.000 0.00 0.00 46.66 2.10
4021 4145 3.135712 TCTGAAAACACAGTAAGCCTCCA 59.864 43.478 0.00 0.00 38.79 3.86
4793 4921 8.669243 CCTTCTTTCATTCCTAGTTGTACATTC 58.331 37.037 0.00 0.00 0.00 2.67
4989 5118 3.705579 TCTTGCATGGTGGAATATTTGGG 59.294 43.478 0.00 0.00 0.00 4.12
5023 5152 6.663953 AGGAGTTTAATAAGCCCTTTTTCTCC 59.336 38.462 0.00 0.00 37.44 3.71
5032 5163 5.064558 GCTAGGAAGGAGTTTAATAAGCCC 58.935 45.833 0.00 0.00 0.00 5.19
5053 5184 2.354003 GGTGCAAATTGCCTTACATGCT 60.354 45.455 15.98 0.00 44.23 3.79
5278 5409 3.766151 CTGCTGCACCATGACAATTAAG 58.234 45.455 0.00 0.00 0.00 1.85
5485 5618 8.334632 CAACAAATGTTTTCTTTACCATTGTCC 58.665 33.333 0.00 0.00 35.83 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.